RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6368
         (317 letters)



>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 70

 Score = 61.7 bits (150), Expect = 3e-13
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 193 AKPSQRDETEKIIRSTLKEIIMSVDLDEVTSKYIRSRLEDIM-DSDLGEYKSFIDQL 248
            K  ++  T++ ++ T+K+++ S +L+EVT K I  ++ +     DL E K FI   
Sbjct: 5   IKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTT 61


>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1
           [TaxId: 9606]}
          Length = 145

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 138 SPDSLRD-KVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKY 189
               L+   +  +LNV+    N F G+F Y +I V D+   ++   +     +
Sbjct: 21  DLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGF 73


>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and
           3 {Salmonella typhimurium [TaxId: 90371]}
          Length = 102

 Score = 26.4 bits (58), Expect = 2.3
 Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 221 VTSKYIRSRLEDIMDSDLGEYKSFIDQLEFRNLLIE 256
           V ++ +R +LE ++   LG+   +    + R  + +
Sbjct: 21  VLARLLREKLESLLPQHLGQVARYAG--QLRARVKK 54


>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector
           protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 51

 Score = 24.6 bits (53), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 179 LLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEI 212
           LL+  DN   YI  AK   R +  +++   L+E+
Sbjct: 6   LLQQIDNIKAYIFDAKQCGRLDEVEVLTENLREL 39


>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase
           8, USP8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 135

 Score = 26.0 bits (56), Expect = 3.6
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 62  VCVCGRQHIFKPVSVQAMWSALQSLHKVSSVARDKN--YFLNGGSHEWVSHY 111
           V +              + S   +L K  S    +N    L GG   W+  Y
Sbjct: 77  VLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCY 128


>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF
           {Bacillus megaterium [TaxId: 1404]}
          Length = 239

 Score = 25.7 bits (55), Expect = 7.9
 Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 3/119 (2%)

Query: 105 HEWVSHYEAKIASDRSCLNEWHAMDSLESRRPPSPDSLRDKVCHILNVTREIDNFFPGIF 164
            E V    +  A+          +  L      +    R  V     +T    +      
Sbjct: 112 IEIVPGVTSVFAAAA-AAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIAL 170

Query: 165 DYCNIRVYDDDKTDLLKHWDNTYKYITSAKPSQRDETEKIIRSTLKEIIMSVDLDEVTS 223
              +       K  +   W      +   K +  DE  KI+R+T+K++  ++  + +  
Sbjct: 171 FLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDE--KIVRTTVKDLDDAMRTNGIRK 227


>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 642

 Score = 25.6 bits (56), Expect = 9.1
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 9/30 (30%)

Query: 182 HW----DNTYKYITSAKPS-----QRDETE 202
           HW    DN Y + T  + +     QR E E
Sbjct: 156 HWLMDVDNWYGFGTGTRATFINTFQRGEQE 185


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,189,565
Number of extensions: 55095
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 11
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)