Query psy6369
Match_columns 123
No_of_seqs 120 out of 1022
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 00:41:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718|consensus 100.0 7.8E-36 1.7E-40 197.8 13.3 120 1-120 40-159 (198)
2 smart00195 DSPc Dual specifici 100.0 9.5E-34 2.1E-38 186.0 14.8 115 1-115 24-138 (138)
3 PF00782 DSPc: Dual specificit 100.0 1.2E-33 2.6E-38 184.2 13.8 114 2-115 17-133 (133)
4 KOG1716|consensus 100.0 1.1E-31 2.4E-36 195.1 14.4 119 1-119 98-219 (285)
5 KOG1717|consensus 100.0 4.2E-32 9E-37 191.4 11.4 119 1-119 195-315 (343)
6 cd00127 DSPc Dual specificity 100.0 1.7E-30 3.7E-35 170.2 14.4 112 2-113 26-139 (139)
7 PRK12361 hypothetical protein; 99.9 1.6E-26 3.5E-31 180.6 15.1 115 2-117 119-238 (547)
8 PTZ00242 protein tyrosine phos 99.9 2.4E-26 5.2E-31 155.5 12.8 117 1-119 38-161 (166)
9 PTZ00393 protein tyrosine phos 99.9 6.7E-26 1.5E-30 159.2 13.2 117 1-120 114-233 (241)
10 KOG1719|consensus 99.9 1.4E-24 3.1E-29 142.4 10.5 115 2-116 50-170 (183)
11 KOG1720|consensus 99.9 3.5E-22 7.6E-27 136.9 13.3 112 1-114 92-206 (225)
12 COG2453 CDC14 Predicted protei 99.9 2.5E-20 5.5E-25 127.6 12.9 95 18-113 69-164 (180)
13 PF05706 CDKN3: Cyclin-depende 99.6 8E-16 1.7E-20 103.0 6.6 87 2-89 70-168 (168)
14 smart00404 PTPc_motif Protein 99.6 4.1E-14 8.9E-19 87.7 10.8 89 23-111 4-101 (105)
15 smart00012 PTPc_DSPc Protein t 99.6 4.1E-14 8.9E-19 87.7 10.8 89 23-111 4-101 (105)
16 KOG2836|consensus 99.6 7E-14 1.5E-18 90.4 11.2 111 1-114 39-154 (173)
17 PF03162 Y_phosphatase2: Tyros 99.4 4.7E-13 1E-17 90.4 7.9 113 2-118 31-152 (164)
18 TIGR01244 conserved hypothetic 99.4 8.4E-12 1.8E-16 81.8 11.6 92 2-100 26-129 (135)
19 cd00047 PTPc Protein tyrosine 99.4 2.7E-12 6E-17 90.6 9.9 89 22-110 130-226 (231)
20 smart00194 PTPc Protein tyrosi 99.4 3.3E-12 7E-17 91.6 9.9 83 28-110 165-253 (258)
21 PRK15375 pathogenicity island 99.4 5.6E-12 1.2E-16 96.9 10.7 94 24-117 426-530 (535)
22 COG5350 Predicted protein tyro 99.2 1.3E-10 2.7E-15 76.7 9.7 105 2-107 31-146 (172)
23 PHA02742 protein tyrosine phos 99.2 4E-10 8.7E-15 82.9 11.2 65 55-119 229-302 (303)
24 PHA02747 protein tyrosine phos 99.1 7.8E-10 1.7E-14 81.7 10.5 54 56-109 230-288 (312)
25 PLN02727 NAD kinase 99.1 4.6E-10 1E-14 91.4 10.0 81 1-84 279-370 (986)
26 PHA02740 protein tyrosine phos 99.1 1.3E-09 2.8E-14 80.0 10.3 53 55-107 221-278 (298)
27 PF13350 Y_phosphatase3: Tyros 99.1 8.2E-10 1.8E-14 74.4 8.3 87 2-92 41-160 (164)
28 PHA02746 protein tyrosine phos 99.1 1.8E-09 3.9E-14 80.1 10.8 81 28-108 209-305 (323)
29 PF00102 Y_phosphatase: Protei 99.1 1.9E-09 4E-14 75.6 10.1 84 28-111 142-231 (235)
30 PF14566 PTPlike_phytase: Inos 99.0 1.4E-09 3.1E-14 72.4 6.5 58 20-79 91-148 (149)
31 PHA02738 hypothetical protein; 99.0 6E-09 1.3E-13 77.3 10.1 54 55-108 227-285 (320)
32 KOG2283|consensus 99.0 3.7E-09 8E-14 80.9 8.4 108 6-115 56-173 (434)
33 PF04179 Init_tRNA_PT: Initiat 99.0 2.3E-08 5.1E-13 76.9 12.8 111 2-112 317-449 (451)
34 PF04273 DUF442: Putative phos 99.0 3.9E-09 8.6E-14 66.9 6.9 68 1-74 25-104 (110)
35 KOG2386|consensus 98.9 2.8E-09 6.1E-14 80.1 6.7 114 4-117 64-186 (393)
36 KOG0792|consensus 98.9 7.2E-09 1.6E-13 85.0 9.0 80 29-108 1036-1121(1144)
37 COG5599 PTP2 Protein tyrosine 98.9 3.8E-09 8.2E-14 75.5 6.6 93 21-117 184-294 (302)
38 KOG0790|consensus 98.8 9E-09 1.9E-13 78.2 4.5 84 22-108 415-512 (600)
39 COG3453 Uncharacterized protei 98.5 4.5E-06 9.9E-11 53.2 10.1 87 1-95 26-125 (130)
40 KOG0789|consensus 98.5 1.1E-06 2.3E-11 66.8 8.5 82 23-107 266-357 (415)
41 COG2365 Protein tyrosine/serin 98.4 1.4E-06 3E-11 62.6 8.0 61 43-103 123-184 (249)
42 KOG0791|consensus 98.4 2.1E-06 4.4E-11 64.0 8.6 89 23-111 254-348 (374)
43 KOG1572|consensus 98.3 1.2E-05 2.6E-10 56.8 9.1 93 2-97 84-189 (249)
44 KOG4228|consensus 98.1 3.1E-06 6.8E-11 70.3 4.0 80 23-105 697-785 (1087)
45 KOG0793|consensus 98.0 1.7E-05 3.7E-10 63.6 6.0 86 23-108 894-986 (1004)
46 KOG4228|consensus 97.8 5.7E-05 1.2E-09 63.0 6.3 87 22-109 984-1077(1087)
47 PF14671 DSPn: Dual specificit 97.5 0.00054 1.2E-08 45.2 6.6 67 30-97 39-112 (141)
48 KOG4471|consensus 96.8 0.0026 5.7E-08 50.6 5.3 39 41-79 360-399 (717)
49 PF06602 Myotub-related: Myotu 95.1 0.084 1.8E-06 40.0 6.3 22 53-74 229-250 (353)
50 KOG1089|consensus 94.3 0.12 2.6E-06 41.3 5.5 31 44-74 332-363 (573)
51 COG0607 PspE Rhodanese-related 94.2 0.11 2.4E-06 31.7 4.3 61 5-79 21-83 (110)
52 cd01518 RHOD_YceA Member of th 93.9 0.29 6.3E-06 29.7 5.7 28 53-83 59-86 (101)
53 cd01520 RHOD_YbbB Member of th 92.7 0.6 1.3E-05 29.8 5.9 30 52-83 83-112 (128)
54 cd01443 Cdc25_Acr2p Cdc25 enzy 90.4 1.3 2.8E-05 27.5 5.6 20 54-73 65-84 (113)
55 PF03668 ATP_bind_2: P-loop AT 90.3 0.58 1.3E-05 34.5 4.3 36 39-74 219-261 (284)
56 cd01522 RHOD_1 Member of the R 90.2 1.1 2.3E-05 28.2 5.1 28 53-83 62-89 (117)
57 PLN02160 thiosulfate sulfurtra 89.3 0.72 1.6E-05 30.0 3.8 29 52-83 78-106 (136)
58 cd01533 4RHOD_Repeat_2 Member 88.2 1.9 4.1E-05 26.5 5.1 27 54-83 65-91 (109)
59 PRK05416 glmZ(sRNA)-inactivati 86.9 1.1 2.5E-05 33.0 4.0 38 37-74 220-264 (288)
60 PF00581 Rhodanese: Rhodanese- 86.4 5.2 0.00011 24.0 6.8 77 5-83 14-97 (113)
61 TIGR03167 tRNA_sel_U_synt tRNA 86.4 3 6.4E-05 31.1 6.0 28 54-83 73-100 (311)
62 PF03861 ANTAR: ANTAR domain; 85.5 2.1 4.5E-05 23.4 3.7 27 70-96 15-41 (56)
63 TIGR03642 cas_csx13 CRISPR-ass 85.1 5.8 0.00013 25.6 6.1 61 22-82 54-116 (124)
64 cd01528 RHOD_2 Member of the R 85.1 4 8.6E-05 24.6 5.3 28 54-84 57-84 (101)
65 cd01531 Acr2p Eukaryotic arsen 84.9 4.6 9.9E-05 24.9 5.6 21 54-74 61-81 (113)
66 cd01523 RHOD_Lact_B Member of 84.6 1.4 3.1E-05 26.5 3.1 28 53-83 59-86 (100)
67 PRK00142 putative rhodanese-re 84.5 2.6 5.7E-05 31.4 5.0 27 54-83 170-196 (314)
68 PRK10886 DnaA initiator-associ 84.2 4.3 9.3E-05 28.2 5.7 38 37-77 23-60 (196)
69 TIGR03865 PQQ_CXXCW PQQ-depend 83.7 2.1 4.5E-05 28.7 3.8 29 53-83 114-142 (162)
70 cd01532 4RHOD_Repeat_1 Member 83.6 2.9 6.3E-05 24.9 4.1 29 54-83 49-77 (92)
71 PRK01415 hypothetical protein; 83.5 2.9 6.4E-05 30.2 4.7 28 53-83 169-196 (247)
72 PRK05320 rhodanese superfamily 83.5 3.1 6.7E-05 30.1 4.9 27 54-83 174-200 (257)
73 cd01534 4RHOD_Repeat_3 Member 80.9 3.2 7E-05 24.7 3.7 27 54-83 55-81 (95)
74 cd01448 TST_Repeat_1 Thiosulfa 80.4 4.5 9.7E-05 25.2 4.3 30 53-84 77-106 (122)
75 smart00400 ZnF_CHCC zinc finge 79.3 3.3 7.1E-05 22.5 3.0 32 59-92 23-54 (55)
76 TIGR00853 pts-lac PTS system, 79.3 2.1 4.5E-05 26.2 2.4 17 56-73 4-20 (95)
77 KOG0235|consensus 78.8 9.5 0.00021 27.0 5.8 53 33-91 130-186 (214)
78 cd05567 PTS_IIB_mannitol PTS_I 78.4 2.8 6E-05 24.9 2.8 16 56-71 1-16 (87)
79 PRK05772 translation initiatio 77.4 7.3 0.00016 29.8 5.3 15 52-66 164-178 (363)
80 PRK07411 hypothetical protein; 76.3 5.5 0.00012 30.6 4.5 28 54-84 341-368 (390)
81 cd01529 4RHOD_Repeats Member o 74.9 5.7 0.00012 23.6 3.5 28 53-83 54-81 (96)
82 PF01807 zf-CHC2: CHC2 zinc fi 74.8 5 0.00011 24.5 3.2 36 59-96 54-89 (97)
83 COG2927 HolC DNA polymerase II 74.1 5.2 0.00011 26.5 3.3 22 43-64 17-38 (144)
84 cd01447 Polysulfide_ST Polysul 73.5 5.6 0.00012 23.7 3.2 29 52-83 58-86 (103)
85 PF02302 PTS_IIB: PTS system, 73.4 3.4 7.4E-05 24.3 2.2 15 57-71 1-15 (90)
86 TIGR00512 salvage_mtnA S-methy 73.3 10 0.00022 28.7 5.1 14 52-65 140-157 (331)
87 PF02673 BacA: Bacitracin resi 72.9 4.7 0.0001 29.3 3.2 27 63-91 159-185 (259)
88 COG1660 Predicted P-loop-conta 72.8 4.2 9E-05 29.9 2.8 18 57-74 245-262 (286)
89 PRK06036 translation initiatio 72.2 9.8 0.00021 28.8 4.8 18 52-69 145-162 (339)
90 PRK05728 DNA polymerase III su 71.8 8.7 0.00019 25.2 4.0 26 40-65 14-39 (142)
91 cd01444 GlpE_ST GlpE sulfurtra 71.8 13 0.00028 21.8 4.6 29 52-83 53-81 (96)
92 PRK10287 thiosulfate:cyanide s 71.6 11 0.00024 23.3 4.3 19 54-73 59-77 (104)
93 PRK13938 phosphoheptose isomer 71.1 20 0.00042 24.9 5.8 40 36-78 26-65 (196)
94 PRK09590 celB cellobiose phosp 70.7 4.5 9.8E-05 25.2 2.4 14 56-69 2-15 (104)
95 cd01525 RHOD_Kc Member of the 70.6 9.5 0.00021 22.9 3.8 26 55-83 65-90 (105)
96 PF09623 Cas_NE0113: CRISPR-as 70.3 19 0.00041 25.7 5.7 56 27-82 82-138 (224)
97 COG3707 AmiR Response regulato 69.7 5.9 0.00013 27.6 2.9 22 75-96 152-173 (194)
98 PRK13352 thiamine biosynthesis 69.4 31 0.00067 27.0 6.9 52 41-92 142-211 (431)
99 cd01527 RHOD_YgaP Member of th 68.9 8.1 0.00018 23.0 3.2 18 53-71 52-69 (99)
100 cd01519 RHOD_HSP67B2 Member of 68.8 10 0.00022 22.8 3.7 27 54-83 65-91 (106)
101 PF04364 DNA_pol3_chi: DNA pol 68.4 9.2 0.0002 24.9 3.5 24 42-65 16-39 (137)
102 PRK12554 undecaprenyl pyrophos 68.1 6.2 0.00014 29.0 3.0 26 64-91 166-191 (276)
103 TIGR00753 undec_PP_bacA undeca 67.5 6.7 0.00014 28.5 3.0 26 64-91 160-185 (255)
104 PRK05720 mtnA methylthioribose 67.5 17 0.00036 27.6 5.2 16 52-67 144-159 (344)
105 PRK11493 sseA 3-mercaptopyruva 67.2 4.1 8.8E-05 29.6 1.9 28 53-83 229-256 (281)
106 PRK00281 undecaprenyl pyrophos 66.7 7 0.00015 28.6 3.0 26 64-91 164-189 (268)
107 PRK11784 tRNA 2-selenouridine 66.7 20 0.00043 27.2 5.5 28 54-83 87-114 (345)
108 COG3564 Uncharacterized protei 66.6 10 0.00022 23.5 3.2 26 42-67 11-36 (116)
109 cd01530 Cdc25 Cdc25 phosphatas 66.4 8.7 0.00019 24.2 3.1 25 53-79 66-91 (121)
110 PRK06646 DNA polymerase III su 66.0 13 0.00029 24.8 4.0 25 41-65 15-39 (154)
111 TIGR02981 phageshock_pspE phag 65.5 14 0.00029 22.7 3.7 18 54-72 57-74 (101)
112 PRK14116 gpmA phosphoglyceromu 65.5 26 0.00057 24.6 5.7 52 33-90 148-203 (228)
113 cd01526 RHOD_ThiF Member of th 65.5 9 0.00019 24.0 3.0 28 53-83 70-97 (122)
114 PF01964 ThiC: ThiC family; I 64.9 36 0.00079 26.6 6.5 54 41-94 138-213 (420)
115 PRK14118 gpmA phosphoglyceromu 64.6 26 0.00057 24.6 5.5 50 34-89 148-201 (227)
116 TIGR00190 thiC thiamine biosyn 64.4 58 0.0012 25.5 7.5 50 41-90 139-206 (423)
117 PRK01112 phosphoglyceromutase; 64.3 27 0.00058 24.7 5.5 53 33-91 147-203 (228)
118 PRK10499 PTS system N,N'-diace 63.0 21 0.00046 22.2 4.3 17 56-72 4-20 (106)
119 COG2897 SseA Rhodanese-related 63.0 6.7 0.00015 29.0 2.3 18 52-69 231-248 (285)
120 PF13344 Hydrolase_6: Haloacid 62.6 33 0.00071 20.9 7.1 55 41-97 16-79 (101)
121 PRK08334 translation initiatio 62.5 19 0.0004 27.6 4.6 12 54-66 160-171 (356)
122 TIGR01550 DOC_P1 death-on-curi 61.3 30 0.00065 22.0 4.9 52 40-97 50-106 (121)
123 PRK10310 PTS system galactitol 61.1 8 0.00017 23.5 2.1 16 57-72 4-19 (94)
124 PRK13462 acid phosphatase; Pro 60.7 33 0.00072 23.6 5.4 51 33-89 115-167 (203)
125 cd01521 RHOD_PspE2 Member of t 60.1 19 0.00041 22.0 3.8 29 53-83 62-91 (110)
126 KOG1530|consensus 59.9 15 0.00032 24.1 3.2 16 56-72 90-105 (136)
127 cd05565 PTS_IIB_lactose PTS_II 59.3 8.9 0.00019 23.7 2.1 17 57-75 2-18 (99)
128 PF10302 DUF2407: DUF2407 ubiq 58.7 5.8 0.00013 24.4 1.2 10 56-65 86-95 (97)
129 COG4738 Predicted transcriptio 58.4 15 0.00033 23.4 3.0 20 63-82 22-41 (124)
130 PF06415 iPGM_N: BPG-independe 58.3 15 0.00033 26.2 3.4 54 23-79 29-85 (223)
131 PRK14119 gpmA phosphoglyceromu 58.1 36 0.00077 23.9 5.3 50 34-89 149-202 (228)
132 cd05564 PTS_IIB_chitobiose_lic 57.7 9.4 0.0002 23.2 2.0 13 57-69 1-13 (96)
133 PRK14117 gpmA phosphoglyceromu 57.4 43 0.00093 23.6 5.6 51 34-90 149-203 (230)
134 PF13580 SIS_2: SIS domain; PD 57.0 50 0.0011 21.2 5.5 34 38-74 18-51 (138)
135 smart00488 DEXDc2 DEAD-like he 56.7 41 0.00088 24.7 5.5 34 44-77 16-49 (289)
136 smart00489 DEXDc3 DEAD-like he 56.7 41 0.00088 24.7 5.5 34 44-77 16-49 (289)
137 TIGR03162 ribazole_cobC alpha- 55.0 38 0.00082 22.3 4.8 50 35-90 115-166 (177)
138 COG0794 GutQ Predicted sugar p 54.9 37 0.0008 23.9 4.7 33 41-79 28-60 (202)
139 PTZ00123 phosphoglycerate muta 54.6 50 0.0011 23.3 5.6 52 33-90 135-190 (236)
140 PRK13936 phosphoheptose isomer 54.4 64 0.0014 22.2 5.9 33 39-74 27-59 (197)
141 smart00450 RHOD Rhodanese Homo 53.2 35 0.00075 19.5 4.0 29 53-84 54-82 (100)
142 COG1440 CelA Phosphotransferas 53.1 15 0.00034 22.9 2.4 14 56-69 2-15 (102)
143 PRK09629 bifunctional thiosulf 53.1 28 0.00061 28.5 4.5 29 52-83 220-248 (610)
144 PF05186 Dpy-30: Dpy-30 motif; 52.7 15 0.00033 18.9 2.0 38 74-112 3-40 (42)
145 COG2230 Cfa Cyclopropane fatty 52.2 75 0.0016 23.6 6.2 77 41-117 155-240 (283)
146 PHA02540 61 DNA primase; Provi 51.2 46 0.00099 25.3 5.1 37 57-96 53-90 (337)
147 PF13147 Amidohydro_4: Amidohy 51.1 80 0.0017 21.8 7.0 54 41-94 222-280 (304)
148 PRK00162 glpE thiosulfate sulf 51.0 53 0.0012 19.8 5.2 28 53-83 56-83 (108)
149 COG1228 HutI Imidazolonepropio 50.9 80 0.0017 24.5 6.5 49 46-94 297-347 (406)
150 TIGR03848 MSMEG_4193 probable 50.9 55 0.0012 22.3 5.2 50 34-89 116-172 (204)
151 PRK06371 translation initiatio 50.8 19 0.00042 27.2 3.0 23 44-66 126-148 (329)
152 PRK11449 putative deoxyribonuc 50.0 32 0.00069 24.8 4.0 53 42-94 114-172 (258)
153 PF03853 YjeF_N: YjeF-related 50.0 36 0.00077 22.8 4.0 68 42-114 10-79 (169)
154 PRK09284 thiamine biosynthesis 49.8 1.2E+02 0.0027 24.8 7.3 54 41-94 294-367 (607)
155 COG1054 Predicted sulfurtransf 49.6 28 0.0006 26.1 3.6 57 38-97 153-216 (308)
156 TIGR02094 more_P_ylases alpha- 49.3 24 0.00052 28.9 3.6 37 55-94 160-199 (601)
157 PHA03338 US22 family homolog; 49.3 21 0.00045 26.7 2.9 50 46-98 149-200 (344)
158 PRK15004 alpha-ribazole phosph 49.2 61 0.0013 22.0 5.2 52 34-91 118-171 (199)
159 cd00133 PTS_IIB PTS_IIB: subun 48.5 15 0.00032 20.6 1.8 17 57-73 1-17 (84)
160 PRK00414 gmhA phosphoheptose i 48.5 56 0.0012 22.4 4.9 34 37-73 26-59 (192)
161 TIGR01258 pgm_1 phosphoglycera 48.3 68 0.0015 22.9 5.4 51 34-90 148-202 (245)
162 cd01449 TST_Repeat_2 Thiosulfa 48.3 34 0.00074 20.8 3.5 27 54-83 77-103 (118)
163 PLN02444 HMP-P synthase 48.2 1E+02 0.0022 25.4 6.7 54 41-94 299-372 (642)
164 PF06838 Met_gamma_lyase: Meth 48.1 66 0.0014 25.0 5.5 65 20-99 127-191 (403)
165 PRK01295 phosphoglyceromutase; 47.8 65 0.0014 22.2 5.2 52 33-90 124-179 (206)
166 cd05566 PTS_IIB_galactitol PTS 47.6 23 0.0005 20.7 2.5 17 57-73 2-18 (89)
167 PF14532 Sigma54_activ_2: Sigm 47.6 62 0.0013 20.5 4.8 32 40-71 6-37 (138)
168 PRK05600 thiamine biosynthesis 47.0 20 0.00044 27.4 2.7 25 56-83 333-357 (370)
169 cd00158 RHOD Rhodanese Homolog 46.7 40 0.00087 18.9 3.5 16 53-69 48-63 (89)
170 PF12637 TSCPD: TSCPD domain; 46.2 59 0.0013 19.7 4.2 20 78-97 50-69 (95)
171 COG0369 CysJ Sulfite reductase 45.9 1.6E+02 0.0034 24.3 7.6 59 38-96 517-577 (587)
172 COG1968 BacA Undecaprenyl pyro 45.9 27 0.00059 25.6 3.1 25 64-90 165-189 (270)
173 PRK15043 transcriptional regul 45.8 59 0.0013 23.5 4.8 62 54-115 161-234 (243)
174 PRK01269 tRNA s(4)U8 sulfurtra 45.8 38 0.00082 26.8 4.1 28 53-83 447-474 (482)
175 PRK13463 phosphatase PhoE; Pro 45.7 82 0.0018 21.5 5.4 51 34-90 120-172 (203)
176 PF10652 DUF2480: Protein of u 45.5 26 0.00057 23.8 2.7 51 14-65 19-72 (167)
177 PRK14120 gpmA phosphoglyceromu 45.5 57 0.0012 23.4 4.7 51 34-90 150-204 (249)
178 PRK05569 flavodoxin; Provision 45.1 56 0.0012 20.7 4.3 59 53-117 81-140 (141)
179 PRK02947 hypothetical protein; 45.0 60 0.0013 23.2 4.8 33 38-73 23-55 (246)
180 cd05563 PTS_IIB_ascorbate PTS_ 44.8 24 0.00051 20.5 2.3 17 57-73 1-17 (86)
181 COG0279 GmhA Phosphoheptose is 44.7 59 0.0013 22.3 4.3 32 37-71 23-54 (176)
182 COG0182 Predicted translation 44.1 17 0.00037 27.5 1.8 30 53-82 148-181 (346)
183 cd01720 Sm_D2 The eukaryotic S 44.0 41 0.00089 20.2 3.2 28 45-72 4-31 (87)
184 PF01026 TatD_DNase: TatD rela 43.9 19 0.00041 25.7 2.0 30 46-75 115-144 (255)
185 COG3265 GntK Gluconate kinase 43.8 24 0.00052 23.8 2.3 80 27-114 42-130 (161)
186 PRK10425 DNase TatD; Provision 43.5 26 0.00057 25.3 2.7 24 46-69 112-135 (258)
187 PRK08335 translation initiatio 43.5 25 0.00055 25.8 2.6 14 51-64 106-119 (275)
188 TIGR00644 recJ single-stranded 43.4 72 0.0016 25.7 5.4 51 33-83 32-83 (539)
189 PF09994 DUF2235: Uncharacteri 43.4 1.3E+02 0.0027 21.9 7.4 57 35-94 71-136 (277)
190 TIGR01391 dnaG DNA primase, ca 43.3 35 0.00075 26.5 3.5 37 59-97 55-91 (415)
191 COG0696 GpmI Phosphoglyceromut 43.2 1.8E+02 0.0038 23.5 8.1 38 41-78 126-165 (509)
192 PRK06835 DNA replication prote 42.9 1.4E+02 0.0031 22.4 7.5 57 40-96 168-230 (329)
193 KOG0870|consensus 42.8 28 0.00061 23.7 2.5 73 44-118 16-100 (172)
194 PF10096 DUF2334: Uncharacteri 42.4 76 0.0017 22.7 4.9 46 22-67 32-80 (243)
195 PF14746 WASH-7_C: WASH comple 42.2 48 0.001 22.7 3.6 52 41-96 60-112 (170)
196 COG3414 SgaB Phosphotransferas 42.0 26 0.00057 21.4 2.2 18 56-73 2-19 (93)
197 PF14420 Clr5: Clr5 domain 41.7 58 0.0013 17.5 4.6 33 80-112 18-50 (54)
198 COG0406 phoE Broad specificity 41.6 59 0.0013 22.1 4.2 35 34-68 122-158 (208)
199 PLN02723 3-mercaptopyruvate su 41.4 47 0.001 24.7 3.9 29 52-83 266-294 (320)
200 PF00580 UvrD-helicase: UvrD/R 41.1 39 0.00085 24.1 3.4 34 54-87 12-47 (315)
201 PF00270 DEAD: DEAD/DEAH box h 41.1 95 0.0021 19.8 5.1 24 54-77 13-36 (169)
202 TIGR00274 N-acetylmuramic acid 40.9 1.4E+02 0.0031 22.0 6.3 46 39-87 41-89 (291)
203 COG2243 CobF Precorrin-2 methy 40.9 63 0.0014 23.3 4.2 43 22-64 57-99 (234)
204 cd05007 SIS_Etherase N-acetylm 40.4 56 0.0012 23.6 4.0 44 39-85 33-79 (257)
205 KOG1158|consensus 40.0 2.2E+02 0.0047 23.8 7.6 57 41-97 577-636 (645)
206 PRK12570 N-acetylmuramic acid- 40.0 72 0.0016 23.6 4.6 47 39-85 42-88 (296)
207 TIGR00524 eIF-2B_rel eIF-2B al 39.8 38 0.00082 25.2 3.1 15 52-66 116-130 (303)
208 PRK14115 gpmA phosphoglyceromu 39.6 75 0.0016 22.7 4.6 50 34-89 148-201 (247)
209 PF12668 DUF3791: Protein of u 39.6 68 0.0015 17.7 3.6 25 72-96 6-30 (62)
210 TIGR03573 WbuX N-acetyl sugar 39.5 76 0.0016 23.9 4.7 31 63-94 284-314 (343)
211 PRK08762 molybdopterin biosynt 39.2 88 0.0019 23.8 5.1 28 53-83 55-82 (376)
212 TIGR01460 HAD-SF-IIA Haloacid 39.0 1.4E+02 0.0029 21.0 6.8 70 41-111 16-98 (236)
213 cd01524 RHOD_Pyr_redox Member 38.9 42 0.0009 19.5 2.7 18 53-71 49-66 (90)
214 cd00687 Terpene_cyclase_nonpla 38.7 94 0.002 22.5 5.1 21 75-95 233-253 (303)
215 TIGR02613 mob_myst_B mobile my 38.2 37 0.0008 23.2 2.7 27 58-84 120-147 (186)
216 TIGR01245 trpD anthranilate ph 38.1 1E+02 0.0022 23.1 5.2 61 44-109 90-155 (330)
217 PF05402 PqqD: Coenzyme PQQ sy 38.0 71 0.0015 17.5 4.3 48 66-117 15-62 (68)
218 TIGR00604 rad3 DNA repair heli 37.4 2.3E+02 0.005 23.6 7.6 53 43-95 17-83 (705)
219 TIGR02584 cas_NE0113 CRISPR-as 37.3 1.5E+02 0.0033 21.0 5.6 44 40-83 102-145 (209)
220 COG0422 ThiC Thiamine biosynth 37.2 2E+02 0.0044 22.5 7.3 68 41-108 140-239 (432)
221 TIGR02093 P_ylase glycogen/sta 37.0 91 0.002 26.6 5.1 40 55-97 296-339 (794)
222 TIGR00197 yjeF_nterm yjeF N-te 36.9 1.2E+02 0.0026 21.0 5.1 36 44-79 34-70 (205)
223 COG3673 Uncharacterized conser 36.6 1.9E+02 0.0042 22.3 6.3 66 36-104 102-176 (423)
224 PRK00919 GMP synthase subunit 35.8 1.4E+02 0.003 22.4 5.5 32 37-69 4-35 (307)
225 PF03102 NeuB: NeuB family; I 35.7 55 0.0012 23.5 3.3 28 39-67 126-153 (241)
226 PF08974 DUF1877: Domain of un 35.5 84 0.0018 21.0 4.1 28 34-61 139-166 (167)
227 cd01906 proteasome_protease_Hs 35.3 69 0.0015 21.2 3.7 31 62-94 129-161 (182)
228 PRK05333 NAD-dependent deacety 35.1 53 0.0011 24.1 3.2 21 50-70 14-34 (285)
229 COG4229 Predicted enolase-phos 34.2 60 0.0013 22.8 3.1 25 41-65 105-129 (229)
230 cd04765 HTH_MlrA-like_sg2 Heli 34.0 1.1E+02 0.0024 18.6 5.4 39 78-116 54-92 (99)
231 PRK10812 putative DNAse; Provi 33.8 47 0.001 24.1 2.8 25 47-71 116-140 (265)
232 PF14555 UBA_4: UBA-like domai 33.6 71 0.0015 16.1 3.0 23 71-94 16-38 (43)
233 KOG0177|consensus 33.6 78 0.0017 22.1 3.6 33 63-95 129-163 (200)
234 PRK10126 tyrosine phosphatase; 33.5 45 0.00098 21.7 2.5 19 56-74 3-21 (147)
235 cd01535 4RHOD_Repeat_4 Member 33.1 1.3E+02 0.0027 19.6 4.5 23 54-78 48-70 (145)
236 PRK05986 cob(I)alamin adenolsy 33.1 1.2E+02 0.0026 21.1 4.6 21 53-73 20-40 (191)
237 PF12554 MOZART1: Mitotic-spin 33.1 83 0.0018 16.8 4.4 32 64-96 17-48 (48)
238 PF12921 ATP13: Mitochondrial 32.9 1.3E+02 0.0028 19.2 4.4 33 85-118 71-103 (126)
239 KOG1905|consensus 32.3 66 0.0014 24.3 3.3 34 38-71 38-71 (353)
240 cd07944 DRE_TIM_HOA_like 4-hyd 32.3 2E+02 0.0043 20.9 6.6 71 25-95 153-238 (266)
241 TIGR03675 arCOG00543 arCOG0054 32.2 1.7E+02 0.0037 24.2 6.0 36 37-73 384-419 (630)
242 PF10727 Rossmann-like: Rossma 32.1 40 0.00087 21.7 2.0 15 55-69 96-110 (127)
243 cd04300 GT1_Glycogen_Phosphory 32.0 1.3E+02 0.0028 25.8 5.3 40 55-97 299-342 (797)
244 PRK14985 maltodextrin phosphor 32.0 1.2E+02 0.0026 26.0 5.0 39 55-96 301-343 (798)
245 cd01701 PolY_Rev1 DNA polymera 31.9 22 0.00048 27.4 0.8 50 41-91 57-110 (404)
246 PRK11391 etp phosphotyrosine-p 31.7 56 0.0012 21.3 2.7 19 56-74 3-21 (144)
247 PF05880 Fiji_64_capsid: Fijiv 31.6 1E+02 0.0022 24.8 4.3 57 38-95 410-470 (561)
248 PF13625 Helicase_C_3: Helicas 31.3 1.4E+02 0.003 18.9 5.8 38 79-117 51-88 (129)
249 PRK13530 arsenate reductase; P 31.1 85 0.0018 20.1 3.4 21 56-77 4-24 (133)
250 PF01451 LMWPc: Low molecular 30.8 70 0.0015 20.2 3.0 15 58-72 1-15 (138)
251 TIGR02689 ars_reduc_gluta arse 30.8 59 0.0013 20.5 2.6 21 56-77 1-21 (126)
252 COG5495 Uncharacterized conser 30.8 68 0.0015 23.4 3.1 26 44-69 80-105 (289)
253 COG3484 Predicted proteasome-t 30.7 2E+02 0.0044 20.5 5.5 35 45-79 31-65 (255)
254 PF00676 E1_dh: Dehydrogenase 30.4 75 0.0016 23.5 3.4 27 37-63 197-223 (300)
255 PRK02249 DNA primase large sub 30.3 1.4E+02 0.0031 22.7 4.9 47 40-94 221-267 (343)
256 PRK00481 NAD-dependent deacety 30.2 63 0.0014 23.0 2.9 21 50-70 8-28 (242)
257 PRK10696 tRNA 2-thiocytidine b 30.1 2.1E+02 0.0045 20.5 5.6 14 54-67 28-41 (258)
258 PLN03050 pyridoxine (pyridoxam 30.1 2.1E+02 0.0046 20.6 5.8 29 55-83 60-88 (246)
259 PF14417 MEDS: MEDS: MEthanoge 30.0 1.8E+02 0.0039 19.7 5.9 27 38-64 30-56 (191)
260 PF09345 DUF1987: Domain of un 29.9 1.3E+02 0.0028 18.5 3.9 27 38-64 59-85 (99)
261 PF03715 Noc2: Noc2p family; 29.8 69 0.0015 23.8 3.1 34 85-118 253-286 (299)
262 cd00308 enolase_like Enolase-s 29.8 1.9E+02 0.0041 20.1 5.3 27 43-69 184-210 (229)
263 cd05568 PTS_IIB_bgl_like PTS_I 29.8 44 0.00096 19.0 1.8 16 57-72 2-17 (85)
264 PRK08535 translation initiatio 29.8 73 0.0016 23.7 3.3 13 52-64 118-130 (310)
265 PRK11027 hypothetical protein; 29.7 1.3E+02 0.0028 19.1 3.9 58 61-118 16-87 (112)
266 PRK11773 uvrD DNA-dependent he 29.7 1.1E+02 0.0025 25.4 4.7 34 54-87 21-56 (721)
267 PRK10953 cysJ sulfite reductas 29.7 3.2E+02 0.0069 22.5 7.6 51 46-96 538-590 (600)
268 PRK07878 molybdopterin biosynt 29.6 86 0.0019 24.1 3.7 28 53-83 341-368 (392)
269 COG1831 Predicted metal-depend 29.4 2.4E+02 0.0052 21.0 7.5 68 22-94 36-108 (285)
270 TIGR00884 guaA_Cterm GMP synth 29.4 1.4E+02 0.0031 22.3 4.7 26 41-67 3-28 (311)
271 PF00627 UBA: UBA/TS-N domain; 29.3 78 0.0017 15.3 3.6 25 65-92 13-37 (37)
272 PF05562 WCOR413: Cold acclima 29.3 1.8E+02 0.0038 20.3 4.7 36 47-82 23-63 (187)
273 TIGR03819 heli_sec_ATPase heli 29.2 1.6E+02 0.0035 22.2 5.1 33 42-74 165-197 (340)
274 PF00343 Phosphorylase: Carboh 29.2 98 0.0021 26.1 4.1 38 56-96 214-255 (713)
275 PRK05667 dnaG DNA primase; Val 29.2 86 0.0019 25.6 3.8 39 57-97 55-93 (580)
276 PF12242 Eno-Rase_NADH_b: NAD( 29.1 94 0.002 18.4 3.0 39 38-76 20-61 (78)
277 PF02568 ThiI: Thiamine biosyn 29.0 72 0.0016 22.2 2.9 24 56-82 4-27 (197)
278 cd07943 DRE_TIM_HOA 4-hydroxy- 29.0 2.2E+02 0.0048 20.4 6.5 69 26-95 157-240 (263)
279 PF12244 DUF3606: Protein of u 28.9 1.1E+02 0.0023 16.8 3.2 25 73-97 22-46 (57)
280 TIGR01307 pgm_bpd_ind 2,3-bisp 28.9 1.4E+02 0.0031 24.0 4.8 53 23-78 107-162 (501)
281 TIGR03217 4OH_2_O_val_ald 4-hy 28.8 2.6E+02 0.0056 21.1 6.6 50 26-75 159-208 (333)
282 PRK05441 murQ N-acetylmuramic 28.7 1.2E+02 0.0026 22.5 4.2 44 39-85 46-92 (299)
283 smart00855 PGAM Phosphoglycera 28.7 1.6E+02 0.0035 18.8 4.9 36 34-69 115-154 (155)
284 PRK10565 putative carbohydrate 28.6 2E+02 0.0043 23.1 5.7 38 46-83 51-88 (508)
285 TIGR00511 ribulose_e2b2 ribose 28.5 74 0.0016 23.6 3.1 13 52-64 113-125 (301)
286 PRK05434 phosphoglyceromutase; 28.5 1.5E+02 0.0032 23.9 4.9 53 23-78 111-166 (507)
287 cd06571 Bac_DnaA_C C-terminal 28.4 1.3E+02 0.0028 17.8 3.7 22 72-93 33-55 (90)
288 PF03807 F420_oxidored: NADP o 27.9 1.3E+02 0.0028 17.4 3.7 23 41-65 74-96 (96)
289 PRK00665 petG cytochrome b6-f 27.9 70 0.0015 16.0 2.0 14 69-82 19-32 (37)
290 PF13378 MR_MLE_C: Enolase C-t 27.8 1.5E+02 0.0031 17.9 4.9 26 41-67 32-57 (111)
291 PF14538 Raptor_N: Raptor N-te 27.8 1.1E+02 0.0024 20.4 3.5 14 55-68 90-104 (154)
292 CHL00008 petG cytochrome b6/f 27.8 71 0.0015 16.0 2.0 15 69-83 19-33 (37)
293 PF00682 HMGL-like: HMGL-like 27.7 2.1E+02 0.0046 19.8 6.4 45 26-71 153-197 (237)
294 cd06206 bifunctional_CYPOR The 27.5 2.8E+02 0.006 21.1 7.5 50 48-97 321-375 (384)
295 COG0394 Wzb Protein-tyrosine-p 27.3 53 0.0012 21.4 2.0 18 56-73 3-20 (139)
296 COG2089 SpsE Sialic acid synth 27.2 1.1E+02 0.0024 23.3 3.8 28 40-68 161-188 (347)
297 TIGR01011 rpsB_bact ribosomal 26.9 1.4E+02 0.003 21.2 4.1 28 37-64 44-71 (225)
298 cd01425 RPS2 Ribosomal protein 26.6 1.5E+02 0.0032 20.4 4.2 28 37-64 38-65 (193)
299 PRK14986 glycogen phosphorylas 26.6 1.7E+02 0.0036 25.2 5.1 39 55-96 312-354 (815)
300 cd08307 Death_Pelle Death doma 26.6 1.2E+02 0.0027 18.6 3.4 31 66-96 48-78 (97)
301 cd06199 SiR Cytochrome p450- l 26.6 2.8E+02 0.0062 20.9 8.0 50 47-96 299-350 (360)
302 TIGR00625 tfb2 Transcription f 26.4 2E+02 0.0044 22.9 5.2 49 65-117 332-387 (448)
303 PLN03049 pyridoxine (pyridoxam 26.2 2.5E+02 0.0055 22.3 5.8 29 55-83 59-87 (462)
304 smart00411 BHL bacterial (prok 26.1 1.4E+02 0.0031 17.3 3.8 27 35-61 19-45 (90)
305 COG0358 DnaG DNA primase (bact 26.0 2.1E+02 0.0046 23.2 5.5 40 55-97 51-91 (568)
306 COG0052 RpsB Ribosomal protein 26.0 1.3E+02 0.0029 21.9 3.9 28 37-64 46-73 (252)
307 PRK12311 rpsB 30S ribosomal pr 25.8 1.4E+02 0.003 22.6 4.1 29 37-65 41-69 (326)
308 PRK11858 aksA trans-homoaconit 25.7 3.1E+02 0.0067 21.0 6.8 86 26-113 161-262 (378)
309 PLN02538 2,3-bisphosphoglycera 25.6 1.4E+02 0.0031 24.4 4.3 53 23-78 128-183 (558)
310 PLN02180 gamma-glutamyl transp 25.5 1.6E+02 0.0035 24.5 4.8 41 54-94 500-542 (639)
311 PF00300 His_Phos_1: Histidine 25.5 69 0.0015 20.2 2.3 33 36-68 121-156 (158)
312 cd03753 proteasome_alpha_type_ 25.4 1.1E+02 0.0024 21.0 3.5 30 63-94 162-193 (213)
313 KOG3354|consensus 25.4 83 0.0018 21.6 2.6 84 27-113 59-156 (191)
314 PTZ00138 small nuclear ribonuc 25.2 1E+02 0.0022 18.7 2.8 23 47-69 18-40 (89)
315 PRK07414 cob(I)yrinic acid a,c 25.1 1.6E+02 0.0035 20.2 4.1 18 54-71 20-37 (178)
316 TIGR03633 arc_protsome_A prote 25.0 1.2E+02 0.0026 21.1 3.6 31 62-94 158-190 (224)
317 cd00268 DEADc DEAD-box helicas 24.7 2.2E+02 0.0047 18.9 5.0 21 55-75 36-56 (203)
318 COG0119 LeuA Isopropylmalate/h 24.7 3.4E+02 0.0075 21.2 6.7 53 25-77 161-213 (409)
319 PRK11070 ssDNA exonuclease Rec 24.7 2.9E+02 0.0063 22.7 6.0 32 33-64 47-78 (575)
320 PRK10347 cell filamentation pr 24.4 1.3E+02 0.0028 21.0 3.6 50 59-108 133-187 (200)
321 cd03764 proteasome_beta_archea 24.3 1.1E+02 0.0023 20.6 3.1 15 80-94 144-158 (188)
322 cd03756 proteasome_alpha_arche 24.3 1.3E+02 0.0028 20.7 3.6 31 62-94 157-189 (211)
323 COG3654 Doc Prophage maintenan 24.2 2.2E+02 0.0047 18.7 5.2 53 38-96 51-108 (132)
324 PF12550 GCR1_C: Transcription 24.2 1.1E+02 0.0023 17.9 2.7 19 78-96 63-81 (81)
325 cd04299 GT1_Glycogen_Phosphory 24.1 1.3E+02 0.0028 25.7 4.0 37 56-95 248-288 (778)
326 TIGR01073 pcrA ATP-dependent D 24.1 3.8E+02 0.0082 22.4 6.7 34 54-87 16-51 (726)
327 CHL00067 rps2 ribosomal protei 24.0 1.7E+02 0.0036 20.9 4.1 29 37-65 50-78 (230)
328 KOG4388|consensus 23.9 2E+02 0.0044 24.1 4.9 24 97-120 439-462 (880)
329 PF05610 DUF779: Protein of un 23.9 79 0.0017 19.5 2.1 20 47-66 2-21 (95)
330 PF00931 NB-ARC: NB-ARC domain 23.7 1.5E+02 0.0033 20.9 4.0 34 41-74 5-38 (287)
331 cd01310 TatD_DNAse TatD like p 23.5 1.7E+02 0.0037 20.1 4.2 20 46-65 112-131 (251)
332 PF06564 YhjQ: YhjQ protein; 23.5 1.4E+02 0.0031 21.5 3.7 20 63-82 10-30 (243)
333 PRK10318 hypothetical protein; 23.5 2.1E+02 0.0047 18.4 4.2 30 41-70 70-103 (121)
334 PLN02150 terpene synthase/cycl 23.4 1.2E+02 0.0027 18.4 3.0 24 70-94 7-30 (96)
335 PRK08624 hypothetical protein; 23.2 54 0.0012 25.3 1.6 40 57-97 57-101 (373)
336 TIGR02691 arsC_pI258_fam arsen 23.2 2.1E+02 0.0045 18.2 5.5 51 3-53 69-127 (129)
337 PRK05568 flavodoxin; Provision 23.1 2E+02 0.0044 18.0 5.6 58 54-116 81-139 (142)
338 PRK03482 phosphoglycerate muta 23.1 2.4E+02 0.0052 19.3 4.8 35 34-68 119-155 (215)
339 PF00308 Bac_DnaA: Bacterial d 23.0 2.7E+02 0.0058 19.4 5.3 20 56-75 35-54 (219)
340 cd03316 MR_like Mandelate race 23.0 2.1E+02 0.0045 21.4 4.7 28 41-69 277-304 (357)
341 smart00644 Ami_2 Ami_2. 23.0 1.9E+02 0.004 17.9 3.9 12 56-67 4-15 (126)
342 PRK14320 glmM phosphoglucosami 22.9 1.9E+02 0.0041 22.5 4.6 43 39-84 156-198 (443)
343 PRK13937 phosphoheptose isomer 22.9 2.5E+02 0.0054 19.0 4.9 33 38-73 21-53 (188)
344 cd01302 Cyclic_amidohydrolases 22.9 2.5E+02 0.0054 20.9 5.1 49 44-96 117-167 (337)
345 cd00194 UBA Ubiquitin Associat 22.8 1.1E+02 0.0023 14.6 3.6 27 64-93 11-37 (38)
346 cd00115 LMWPc Substituted upda 22.8 1E+02 0.0022 19.6 2.7 17 57-73 2-18 (141)
347 smart00226 LMWPc Low molecular 22.7 76 0.0016 20.2 2.0 17 58-74 1-17 (140)
348 cd00561 CobA_CobO_BtuR ATP:cor 22.7 2.2E+02 0.0047 19.1 4.3 18 56-73 3-20 (159)
349 TIGR02764 spore_ybaN_pdaB poly 22.7 2.5E+02 0.0053 18.8 4.8 24 43-66 140-163 (191)
350 PRK02090 phosphoadenosine phos 22.5 1.5E+02 0.0032 21.1 3.6 49 43-94 27-87 (241)
351 TIGR00066 g_glut_trans gamma-g 22.5 2.2E+02 0.0047 22.9 4.9 41 54-94 415-457 (516)
352 PRK12344 putative alpha-isopro 22.4 4.2E+02 0.0091 21.4 7.0 87 26-114 174-278 (524)
353 PF13017 Maelstrom: piRNA path 22.1 1.9E+02 0.0041 20.3 4.0 73 23-95 51-132 (213)
354 PRK01269 tRNA s(4)U8 sulfurtra 22.1 1.3E+02 0.0028 23.8 3.6 24 56-82 178-201 (482)
355 TIGR00268 conserved hypothetic 22.0 2E+02 0.0044 20.4 4.3 19 49-67 6-24 (252)
356 PRK15129 L-Ala-D/L-Glu epimera 21.8 1.8E+02 0.004 21.5 4.2 29 41-69 254-282 (321)
357 PLN02282 phosphoglycerate kina 21.8 1.7E+02 0.0037 22.9 4.0 41 26-67 27-68 (401)
358 PRK10919 ATP-dependent DNA hel 21.8 2.3E+02 0.0049 23.6 5.0 34 54-87 14-49 (672)
359 COG1513 CynS Cyanate lyase [In 21.7 1.7E+02 0.0037 19.2 3.4 28 63-90 28-55 (151)
360 TIGR01075 uvrD DNA helicase II 21.7 2E+02 0.0043 24.0 4.7 34 54-87 16-51 (715)
361 PF04309 G3P_antiterm: Glycero 21.7 2E+02 0.0044 19.7 4.0 35 46-81 35-71 (175)
362 PLN02918 pyridoxine (pyridoxam 21.7 3.3E+02 0.0072 22.3 5.7 29 55-83 135-163 (544)
363 PRK05299 rpsB 30S ribosomal pr 21.7 2E+02 0.0042 21.0 4.1 28 37-64 46-73 (258)
364 PF04219 DUF413: Protein of un 21.7 2.1E+02 0.0045 17.5 4.2 32 88-119 48-79 (93)
365 PHA03141 helicase-primase prim 21.6 2.2E+02 0.0047 17.7 4.1 33 85-117 66-99 (101)
366 TIGR00762 DegV EDD domain prot 21.5 1.6E+02 0.0034 21.3 3.7 18 80-97 133-150 (275)
367 COG0084 TatD Mg-dependent DNas 21.5 1.4E+02 0.0031 21.7 3.4 52 43-94 113-170 (256)
368 COG4553 DepA Poly-beta-hydroxy 21.5 3.8E+02 0.0082 20.5 6.1 46 33-82 149-194 (415)
369 PF00216 Bac_DNA_binding: Bact 21.4 1.6E+02 0.0035 17.0 3.2 27 35-61 19-45 (90)
370 PRK08939 primosomal protein Dn 21.4 3.5E+02 0.0076 20.1 5.6 36 39-74 138-175 (306)
371 KOG1838|consensus 21.3 67 0.0015 25.1 1.8 56 44-99 143-198 (409)
372 smart00804 TAP_C C-terminal do 21.3 1.5E+02 0.0033 16.6 2.8 27 79-105 35-62 (63)
373 TIGR03018 pepcterm_TyrKin exop 21.3 2.8E+02 0.006 18.9 6.4 47 32-78 6-60 (207)
374 TIGR03634 arc_protsome_B prote 21.3 1.4E+02 0.003 19.9 3.2 25 70-94 133-159 (185)
375 COG0140 HisI Phosphoribosyl-AT 21.3 1.7E+02 0.0036 18.0 3.1 23 75-97 67-89 (92)
376 TIGR03569 NeuB_NnaB N-acetylne 21.1 1.5E+02 0.0033 22.4 3.6 28 39-66 146-174 (329)
377 cd03086 PGM3 PGM3 (phosphogluc 21.1 1.8E+02 0.0038 23.5 4.1 32 48-82 180-211 (513)
378 PF11829 DUF3349: Protein of u 21.1 1.6E+02 0.0034 18.2 3.1 32 85-116 5-36 (96)
379 PF12780 AAA_8: P-loop contain 20.9 3.1E+02 0.0068 20.0 5.1 39 41-79 13-55 (268)
380 PHA02593 62 clamp loader small 20.8 1.7E+02 0.0036 20.5 3.4 27 71-97 125-151 (191)
381 KOG3020|consensus 20.8 1.2E+02 0.0026 22.7 2.9 26 41-66 159-185 (296)
382 PRK08195 4-hyroxy-2-oxovalerat 20.7 3.8E+02 0.0082 20.2 6.7 49 26-74 160-208 (337)
383 PF04851 ResIII: Type III rest 20.7 2.4E+02 0.0053 18.0 5.7 55 43-110 10-67 (184)
384 TIGR00010 hydrolase, TatD fami 20.6 2.3E+02 0.0049 19.5 4.3 19 47-65 113-131 (252)
385 cd03755 proteasome_alpha_type_ 20.3 1.7E+02 0.0036 20.1 3.5 31 62-94 157-189 (207)
386 PRK03996 proteasome subunit al 20.3 1.7E+02 0.0037 20.6 3.6 31 62-94 165-197 (241)
387 PF05960 DUF885: Bacterial pro 20.3 1.3E+02 0.0029 23.9 3.3 24 72-95 451-474 (549)
388 PRK12402 replication factor C 20.2 3E+02 0.0066 20.0 5.0 30 43-72 22-53 (337)
389 PF12643 MazG-like: MazG-like 20.2 2.3E+02 0.0049 17.4 5.5 19 69-87 42-61 (98)
390 PRK15023 L-serine deaminase; P 20.2 1.4E+02 0.003 23.8 3.3 32 60-91 337-368 (454)
391 PF13592 HTH_33: Winged helix- 20.2 1.7E+02 0.0036 15.9 4.8 30 66-95 3-34 (60)
392 KOG2036|consensus 20.0 2E+02 0.0043 24.7 4.2 64 40-112 258-323 (1011)
393 cd04450 DEP_RGS7-like DEP (Dis 20.0 1.9E+02 0.004 17.1 3.2 24 71-94 32-56 (88)
No 1
>KOG1718|consensus
Probab=100.00 E-value=7.8e-36 Score=197.78 Aligned_cols=120 Identities=33% Similarity=0.449 Sum_probs=115.9
Q ss_pred CCCCeEEEEcCCCCCCCCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHH
Q psy6369 1 MDGVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKA 80 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~ 80 (123)
.+||++|||.+.|.++..-.+++|..+|+.|.+...+.++|+.+.+.|+....+||++||||.+|++||+++|+||||++
T Consensus 40 ~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~ 119 (198)
T KOG1718|consen 40 KRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKY 119 (198)
T ss_pred hcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHH
Confidence 47999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccc
Q psy6369 81 YNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQPSL 120 (123)
Q Consensus 81 ~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~~ 120 (123)
.++++.||+.++|++||.++||.+|.+||.+||++|..+.
T Consensus 120 ~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 120 HCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred ccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999998764
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=9.5e-34 Score=185.97 Aligned_cols=115 Identities=37% Similarity=0.624 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCCCCCCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHH
Q psy6369 1 MDGVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKA 80 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~ 80 (123)
++||++|||++.+.+...+.+++|+++|+.|.+..++.+.+.++++||+....+|++|||||.+|.|||++++++|||..
T Consensus 24 ~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 24 KLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred HcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 37999999999887766677899999999998777788899999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhh
Q psy6369 81 YNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVG 115 (123)
Q Consensus 81 ~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~ 115 (123)
.++++++|+++++++||.+.|+.+|.+||+.||+.
T Consensus 104 ~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 104 RNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred hCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999963
No 3
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=100.00 E-value=1.2e-33 Score=184.24 Aligned_cols=114 Identities=39% Similarity=0.656 Sum_probs=107.4
Q ss_pred CCCeEEEEcCCCCCC---CCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHH
Q psy6369 2 DGVCHILNVTREIDN---FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAM 78 (123)
Q Consensus 2 ~gI~~iin~~~~~~~---~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~ 78 (123)
+||++|||++.+.+. ....+++|+++|+.|....++.+.++++.+||+++..+|++|||||.+|.|||++++++|||
T Consensus 17 ~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 96 (133)
T PF00782_consen 17 LGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLM 96 (133)
T ss_dssp TTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHH
Confidence 699999999998776 34667999999999988888899999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhh
Q psy6369 79 KAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVG 115 (123)
Q Consensus 79 ~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~ 115 (123)
...+|++++|+++++++||.+.|+++|++||.+||++
T Consensus 97 ~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 97 KKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp HHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999974
No 4
>KOG1716|consensus
Probab=99.98 E-value=1.1e-31 Score=195.12 Aligned_cols=119 Identities=37% Similarity=0.592 Sum_probs=112.7
Q ss_pred CCCCeEEEEcCCCCCCC--CCC-cceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 1 MDGVCHILNVTREIDNF--FPG-IFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~~--~~~-~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
++||++|+|+..+.+.. ... +++|+++|+.|.+..++..+|+.+++||+.+..+|++|||||.+|++||+++++|||
T Consensus 98 ~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYl 177 (285)
T KOG1716|consen 98 KLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYL 177 (285)
T ss_pred HcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHH
Confidence 37999999999998873 344 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhccc
Q psy6369 78 MKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQPS 119 (123)
Q Consensus 78 ~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~ 119 (123)
|+..+|++++|+++|+.+||.+.||.+|+.||.+||+.+..+
T Consensus 178 M~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~ 219 (285)
T KOG1716|consen 178 MKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKK 219 (285)
T ss_pred HHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999998775
No 5
>KOG1717|consensus
Probab=99.98 E-value=4.2e-32 Score=191.42 Aligned_cols=119 Identities=33% Similarity=0.527 Sum_probs=112.7
Q ss_pred CCCCeEEEEcCCCCCCCCCC--cceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHH
Q psy6369 1 MDGVCHILNVTREIDNFFPG--IFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAM 78 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~~~~~--~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~ 78 (123)
+.||++|||++...|+.++. .+.|.+||+.|+...++.++|.++++||++++.+...|||||.+|++||+|+++||||
T Consensus 195 k~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLM 274 (343)
T KOG1717|consen 195 KYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLM 274 (343)
T ss_pred hcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHH
Confidence 35899999999999988754 3899999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhccc
Q psy6369 79 KAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQPS 119 (123)
Q Consensus 79 ~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~ 119 (123)
++..+++++|+++|+.++..+.||.+|+.||..||+.|..+
T Consensus 275 qkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~ 315 (343)
T KOG1717|consen 275 QKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLE 315 (343)
T ss_pred HHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999988654
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.97 E-value=1.7e-30 Score=170.17 Aligned_cols=112 Identities=41% Similarity=0.720 Sum_probs=104.6
Q ss_pred CCCeEEEEcCCCCCC--CCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHH
Q psy6369 2 DGVCHILNVTREIDN--FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMK 79 (123)
Q Consensus 2 ~gI~~iin~~~~~~~--~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~ 79 (123)
+||++|||++.+.+. ....+++|+++|+.|.+..++...++.+++||+....+|++|||||.+|.|||++++++|+|.
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~ 105 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHH
Confidence 799999999987763 445779999999999887778888999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy6369 80 AYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113 (123)
Q Consensus 80 ~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~ 113 (123)
..++++++|++++|+.||.+.|+.+|..||.+||
T Consensus 106 ~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 106 TLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999997
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=180.65 Aligned_cols=115 Identities=24% Similarity=0.390 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCCCCC----CCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 2 DGVCHILNVTREIDN----FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 2 ~gI~~iin~~~~~~~----~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
+||++|||++.|.+. ..+.+++|+++|+.|...+. .+.++++++||++.+++|++|||||.+|+|||+++++|||
T Consensus 119 ~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayL 197 (547)
T PRK12361 119 NKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYL 197 (547)
T ss_pred cCCCEEEEcccccccccccccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHH
Confidence 799999999987653 23456899999999987665 4679999999999999999999999999999999999999
Q ss_pred HHH-cCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy6369 78 MKA-YNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 78 ~~~-~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 117 (123)
|.+ .++++++|++++|++||.+.||+.|+++|++|.++..
T Consensus 198 m~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 198 LCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred HHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Confidence 976 5899999999999999999999999999999887543
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.94 E-value=2.4e-26 Score=155.47 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCCCCC---CCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCchhHHHH
Q psy6369 1 MDGVCHILNVTREIDN---FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQ----GSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~---~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~----~~~vlVHC~~G~~Rs~~~~ 73 (123)
++||++|||++.+..+ +...+++|+++|+.|...+. .+.+.+.++++++.+.. |++|+|||.+|+||||+++
T Consensus 38 ~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~-~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~ 116 (166)
T PTZ00242 38 RYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPP-KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILV 116 (166)
T ss_pred hCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 4799999999865321 12357899999998876554 33466777888877654 9999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhccc
Q psy6369 74 IAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQPS 119 (123)
Q Consensus 74 ~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~ 119 (123)
++|||...++++++|+++++++||.+. +..|..+|.+|++.+++.
T Consensus 117 a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 117 ALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhccC
Confidence 999999988999999999999999764 789999999999887764
No 9
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.94 E-value=6.7e-26 Score=159.22 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCCCC---CCCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 1 MDGVCHILNVTREID---NFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 1 ~~gI~~iin~~~~~~---~~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
+.||++||+++.... .+...+++|+++|+.|...++ .+.+++.++++++..+.|++|+|||.+|.||||+++++||
T Consensus 114 ~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayL 192 (241)
T PTZ00393 114 NYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVL 192 (241)
T ss_pred HcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 369999999986542 223457999999999987665 4457788889998888999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccc
Q psy6369 78 MKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQPSL 120 (123)
Q Consensus 78 ~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~~ 120 (123)
|. .|+++++|++++|++||.+. +..|++.|++|+++.+++.
T Consensus 193 I~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~k~~ 233 (241)
T PTZ00393 193 IE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKKKKN 233 (241)
T ss_pred HH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccccc
Confidence 97 69999999999999999874 8899999999999887653
No 10
>KOG1719|consensus
Probab=99.92 E-value=1.4e-24 Score=142.45 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=100.1
Q ss_pred CCCeEEEEcCCCCCC------CCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHH
Q psy6369 2 DGVCHILNVTREIDN------FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 2 ~gI~~iin~~~~~~~------~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~a 75 (123)
.|+..|+.+..+.+- |-..+++++.+|..|....+-.+.+.++++||++....|+.|+|||.+|.+||+++++|
T Consensus 50 e~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~c 129 (183)
T KOG1719|consen 50 ENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVAC 129 (183)
T ss_pred cCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhh
Confidence 467788888876542 22356899999999984333455688899999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhh
Q psy6369 76 YAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGV 116 (123)
Q Consensus 76 yl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l 116 (123)
|||++.+|++++|+++++++||.+...+++.+.|.+|...+
T Consensus 130 YLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~ 170 (183)
T KOG1719|consen 130 YLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQI 170 (183)
T ss_pred hhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 11
>KOG1720|consensus
Probab=99.89 E-value=3.5e-22 Score=136.94 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCCC---CCCCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 1 MDGVCHILNVTREI---DNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 1 ~~gI~~iin~~~~~---~~~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
.|++++++.+..-. ..+.+.+|.++++|+.|...++.. .+.+.++.++.+.+ ||+|.|||.+|.||||++++|||
T Consensus 92 ~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~-~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~l 169 (225)
T KOG1720|consen 92 NNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDA-IVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYL 169 (225)
T ss_pred hcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHH-HHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHH
Confidence 36788999998654 445677899999999999777644 46677777777777 89999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHh
Q psy6369 78 MKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQV 114 (123)
Q Consensus 78 ~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~ 114 (123)
|+.+++++.+|+.++|..||.+...+.+...+.++..
T Consensus 170 my~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 170 MYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877665
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=2.5e-20 Score=127.59 Aligned_cols=95 Identities=25% Similarity=0.255 Sum_probs=78.2
Q ss_pred CCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHc-CCCHHHHHHHHHhhC
Q psy6369 18 FPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAY-NWDLTRAMAHVRQKR 96 (123)
Q Consensus 18 ~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~-~~~~~~a~~~v~~~r 96 (123)
.+.++.++++|+.|+..+++ +.+++++++|++..++|++|+|||.+|+||||++++||+|... .++.++++.+++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 45668999999999988886 5699999999999999999999999999999999999999994 477888888888888
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy6369 97 NCIKPNANFITQLETYQ 113 (123)
Q Consensus 97 p~~~~~~~~~~~L~~~~ 113 (123)
|.......+...+.+.+
T Consensus 148 ~~~v~~~~q~~~~~e~~ 164 (180)
T COG2453 148 PGAVVTEIQHLFELEQE 164 (180)
T ss_pred CcccccHHHHHHHHHHH
Confidence 86444444443333333
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.63 E-value=8e-16 Score=103.03 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCCC-------CC----CCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhH
Q psy6369 2 DGVCHILNVTREI-------DN----FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSA 70 (123)
Q Consensus 2 ~gI~~iin~~~~~-------~~----~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~ 70 (123)
.|+..|+.++... ++ +...++.|+++||.|...+++.. ..++.+.+...+++|++|+|||.+|.||||
T Consensus 70 ~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~~~i~~eL~~~L~~g~~V~vHC~GGlGRtG 148 (168)
T PF05706_consen 70 WGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-AWQILEELAARLENGRKVLVHCRGGLGRTG 148 (168)
T ss_dssp TT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-HHHHHHHHHHHHHTT--EEEE-SSSSSHHH
T ss_pred CCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-HHHHHHHHHHHHHcCCEEEEECCCCCCHHH
Confidence 5788999988542 11 12345899999999998887654 446888999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCCHHHHH
Q psy6369 71 SVVIAYAMKAY-NWDLTRAM 89 (123)
Q Consensus 71 ~~~~ayl~~~~-~~~~~~a~ 89 (123)
++++++|+.-. ++++++|+
T Consensus 149 lvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 149 LVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHcCCCChhhcC
Confidence 99999888754 48999986
No 14
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.59 E-value=4.1e-14 Score=87.71 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=66.8
Q ss_pred eEEEEEeccCCCccHHHHHHHHHHHHHHHHh---CCCeEEEEeCCCCchhHHHHHHHHHHHc------CCCHHHHHHHHH
Q psy6369 23 DYCNIRVYDDDKTDLLKHWDNTYKYITSAKN---QGSKVLVHCKMGISRSASVVIAYAMKAY------NWDLTRAMAHVR 93 (123)
Q Consensus 23 ~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rs~~~~~ayl~~~~------~~~~~~a~~~v~ 93 (123)
.|...+|+|...+...+.+.++++.+++... .+++|+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3555566676545444556566666666554 3679999999999999999999998753 378999999999
Q ss_pred hhCCCCCCCHHHHHHHHH
Q psy6369 94 QKRNCIKPNANFITQLET 111 (123)
Q Consensus 94 ~~rp~~~~~~~~~~~L~~ 111 (123)
..||....+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999998888777665543
No 15
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.59 E-value=4.1e-14 Score=87.71 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=66.8
Q ss_pred eEEEEEeccCCCccHHHHHHHHHHHHHHHHh---CCCeEEEEeCCCCchhHHHHHHHHHHHc------CCCHHHHHHHHH
Q psy6369 23 DYCNIRVYDDDKTDLLKHWDNTYKYITSAKN---QGSKVLVHCKMGISRSASVVIAYAMKAY------NWDLTRAMAHVR 93 (123)
Q Consensus 23 ~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rs~~~~~ayl~~~~------~~~~~~a~~~v~ 93 (123)
.|...+|+|...+...+.+.++++.+++... .+++|+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3555566676545444556566666666554 3679999999999999999999998753 378999999999
Q ss_pred hhCCCCCCCHHHHHHHHH
Q psy6369 94 QKRNCIKPNANFITQLET 111 (123)
Q Consensus 94 ~~rp~~~~~~~~~~~L~~ 111 (123)
..||....+..+...+..
T Consensus 84 ~~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhhCCcHHHHHHHHH
Confidence 999998888777665543
No 16
>KOG2836|consensus
Probab=99.57 E-value=7e-14 Score=90.39 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCCCC---CCCCcceEEEEEeccCCCccHHHHHHHHHHHHHHH--HhCCCeEEEEeCCCCchhHHHHHH
Q psy6369 1 MDGVCHILNVTREIDN---FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSA--KNQGSKVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~---~~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~--~~~~~~vlVHC~~G~~Rs~~~~~a 75 (123)
.+|+++|+.+|....+ ...++|..+.+|.+|..+++ .+..++-++.+... ...|..|.|||.+|.||++.+++.
T Consensus 39 KygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlval 117 (173)
T KOG2836|consen 39 KYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVAL 117 (173)
T ss_pred hcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHH
Confidence 3699999999976533 34678999999999873332 22222222332222 235789999999999999999988
Q ss_pred HHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHh
Q psy6369 76 YAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQV 114 (123)
Q Consensus 76 yl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~ 114 (123)
-|+. .||.+++|++++|++|.+ ..|..++..|+.|..
T Consensus 118 alie-~gmkyedave~ir~krrg-a~n~kql~~lekyrp 154 (173)
T KOG2836|consen 118 ALIE-AGMKYEDAVEMIRQKRRG-AINSKQLLYLEKYRP 154 (173)
T ss_pred HHHH-ccccHHHHHHHHHHHhhc-cccHHHHHHHHHhCc
Confidence 7876 499999999999999974 456666667766654
No 17
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.45 E-value=4.7e-13 Score=90.41 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCCCC-----C-CCCcceEEEEEeccCCC---ccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHH
Q psy6369 2 DGVCHILNVTREIDN-----F-FPGIFDYCNIRVYDDDK---TDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASV 72 (123)
Q Consensus 2 ~gI~~iin~~~~~~~-----~-~~~~i~~~~ipi~d~~~---~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 72 (123)
.|+++|||++.+.+. + ...++++.++++..... +.-.+.+.++++.+.+. ...+|||||..|..|||++
T Consensus 31 L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~--~n~PvLiHC~~G~~rTG~v 108 (164)
T PF03162_consen 31 LGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP--RNYPVLIHCNHGKDRTGLV 108 (164)
T ss_dssp HT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G--GG-SEEEE-SSSSSHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC--CCCCEEEEeCCCCcchhhH
Confidence 589999999987532 1 24568999999876533 11233455666665543 3469999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy6369 73 VIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQP 118 (123)
Q Consensus 73 ~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 118 (123)
+++|= +.+||++.+|++.++.--.. ..+..-++.++.|+..+..
T Consensus 109 vg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~~~ 152 (164)
T PF03162_consen 109 VGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVELVV 152 (164)
T ss_dssp HHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT-------
T ss_pred HHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCcceec
Confidence 99988 67899999999999974332 3455555556666655443
No 18
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.41 E-value=8.4e-12 Score=81.81 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCCCCCC------------CCCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 2 DGVCHILNVTREIDNF------------FPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 2 ~gI~~iin~~~~~~~~------------~~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
.||++|||++.+.+.. .+.+++|+++|+...... .+......++++ ...++||+||.+|. ||
T Consensus 26 ~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~--~~~v~~f~~~~~---~~~~pvL~HC~sG~-Rt 99 (135)
T TIGR01244 26 LGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDIT--PDDVETFRAAIG---AAEGPVLAYCRSGT-RS 99 (135)
T ss_pred CCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCC--HHHHHHHHHHHH---hCCCCEEEEcCCCh-HH
Confidence 6999999999654211 124789999998754321 111222333333 34579999999999 99
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhCCCCC
Q psy6369 70 ASVVIAYAMKAYNWDLTRAMAHVRQKRNCIK 100 (123)
Q Consensus 70 ~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~ 100 (123)
+++.+.++.. .|++.+++++..+.......
T Consensus 100 ~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 100 SLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 8888766655 78999999999998765443
No 19
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.40 E-value=2.7e-12 Score=90.56 Aligned_cols=89 Identities=11% Similarity=0.178 Sum_probs=65.0
Q ss_pred ceEEEEE-eccCCCccHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHH
Q psy6369 22 FDYCNIR-VYDDDKTDLLKHWDNTYKYITSAKN--QGSKVLVHCKMGISRSASVVIAYAMKAY-----NWDLTRAMAHVR 93 (123)
Q Consensus 22 i~~~~ip-i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~ayl~~~~-----~~~~~~a~~~v~ 93 (123)
+.++++. |.|...++-.+.+.++++.++.... .+++|+|||.+|.||||++++++++... ..++.+++..+|
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3444443 6666544443445555555555542 3679999999999999999998876543 599999999999
Q ss_pred hhCCCCCCCHHHHHHHH
Q psy6369 94 QKRNCIKPNANFITQLE 110 (123)
Q Consensus 94 ~~rp~~~~~~~~~~~L~ 110 (123)
+.||.+..+..+...+.
T Consensus 210 ~~R~~~v~~~~Qy~f~~ 226 (231)
T cd00047 210 SQRPGMVQTEEQYIFLY 226 (231)
T ss_pred hccccccCCHHHHHHHH
Confidence 99999998887776654
No 20
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.39 E-value=3.3e-12 Score=91.65 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=62.0
Q ss_pred EeccCCCccHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCchhHHHHHHHHHHH-----cCCCHHHHHHHHHhhCCCCCC
Q psy6369 28 RVYDDDKTDLLKHWDNTYKYITSAKNQ-GSKVLVHCKMGISRSASVVIAYAMKA-----YNWDLTRAMAHVRQKRNCIKP 101 (123)
Q Consensus 28 pi~d~~~~~~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rs~~~~~ayl~~~-----~~~~~~~a~~~v~~~rp~~~~ 101 (123)
.|.|.+.+.-...+.+++..++..... +++|+|||.+|.||||++++++++.. ...++.+++..+|+.|+.+..
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~ 244 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQ 244 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccC
Confidence 355665543333344455555554332 67999999999999999999987643 358999999999999999999
Q ss_pred CHHHHHHHH
Q psy6369 102 NANFITQLE 110 (123)
Q Consensus 102 ~~~~~~~L~ 110 (123)
+..+...+.
T Consensus 245 ~~~Qy~f~~ 253 (258)
T smart00194 245 TEEQYIFLY 253 (258)
T ss_pred CHHHHHHHH
Confidence 988877654
No 21
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.38 E-value=5.6e-12 Score=96.91 Aligned_cols=94 Identities=18% Similarity=0.254 Sum_probs=70.4
Q ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHHHhCC---------CeEEEEeCCCCchhHHHHHHHHHHHcC-CCHHHHHHHHH
Q psy6369 24 YCNIRVYDDDKTDLLKHWDNTYKYITSAKNQG---------SKVLVHCKMGISRSASVVIAYAMKAYN-WDLTRAMAHVR 93 (123)
Q Consensus 24 ~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~---------~~vlVHC~~G~~Rs~~~~~ayl~~~~~-~~~~~a~~~v~ 93 (123)
|+...|+|++.++-...+..+.+.++.....+ ...+|||.+|+||||++++++++...+ .++++++..+|
T Consensus 426 FHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR 505 (535)
T PRK15375 426 LHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFR 505 (535)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 33344788765443444555666665543221 234799999999999999999987544 78999999999
Q ss_pred hhCCC-CCCCHHHHHHHHHHHhhhc
Q psy6369 94 QKRNC-IKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 94 ~~rp~-~~~~~~~~~~L~~~~~~l~ 117 (123)
..|+. +..+..+...|.....+|-
T Consensus 506 ~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 506 NSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred hcCCccccccHHHHHHHHHHHHHHh
Confidence 99998 9999999999988876653
No 22
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.24 E-value=1.3e-10 Score=76.70 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCCCC-CCCc---ceEEEEEeccCC------CccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHH
Q psy6369 2 DGVCHILNVTREIDNF-FPGI---FDYCNIRVYDDD------KTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 2 ~gI~~iin~~~~~~~~-~~~~---i~~~~ipi~d~~------~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~ 71 (123)
+|-+++|++......+ .+.. -+++.+-+.|.. ...-..+.+.+++|++++-+. .++||||.+|+|||++
T Consensus 31 h~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGISRStA 109 (172)
T COG5350 31 HGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAGISRSTA 109 (172)
T ss_pred cCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccccccchH
Confidence 4667788887542211 1222 256666666641 112235688999999999776 4999999999999987
Q ss_pred HHH-HHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHH
Q psy6369 72 VVI-AYAMKAYNWDLTRAMAHVRQKRNCIKPNANFIT 107 (123)
Q Consensus 72 ~~~-ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~ 107 (123)
+++ +-+.....++..+..+.++..+|.+.||+..+.
T Consensus 110 ~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 110 AALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred HHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 774 345566789999999999999999999997654
No 23
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.19 E-value=4e-10 Score=82.91 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhCCCCCCCHHHHH----HHHHHHhhhccc
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK-----AYNWDLTRAMAHVRQKRNCIKPNANFIT----QLETYQVGVQPS 119 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~-----~~~~~~~~a~~~v~~~rp~~~~~~~~~~----~L~~~~~~l~~~ 119 (123)
.+||+|||.+|+||||++++...+. ....+..+++..+|+.|+.+..+..+.. .|.+|-..+..+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~~~~ 302 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLMADK 302 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHhccC
Confidence 3699999999999999999866544 2237889999999999999888876654 355666665543
No 24
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.13 E-value=7.8e-10 Score=81.68 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=44.8
Q ss_pred CeEEEEeCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhCCCCCCCHHHHHHH
Q psy6369 56 SKVLVHCKMGISRSASVVIAYAMK-----AYNWDLTRAMAHVRQKRNCIKPNANFITQL 109 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ayl~~-----~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L 109 (123)
+||+|||.+|+||||+++++..+. ....+..+++..+|..|+.+..+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 699999999999999999876533 234889999999999999988887655544
No 25
>PLN02727 NAD kinase
Probab=99.13 E-value=4.6e-10 Score=91.36 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCCCCCC--CCC---------CcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 1 MDGVCHILNVTREIDN--FFP---------GIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~--~~~---------~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
++||++|||++.+.+. +.. .+++|+++|+.+.+.+. .+.+.++.+++++ ...++||+||..|..|+
T Consensus 279 ~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt-~EqVe~fa~~l~~--slpkPVLvHCKSGarRA 355 (986)
T PLN02727 279 EKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPS-AEQVEKFASLVSD--SSKKPIYLHSKEGVWRT 355 (986)
T ss_pred HCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHh--hcCCCEEEECCCCCchH
Confidence 3799999999987652 221 35899999997755443 2334455555533 34679999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy6369 70 ASVVIAYAMKAYNWD 84 (123)
Q Consensus 70 ~~~~~ayl~~~~~~~ 84 (123)
|+++++|+...-+..
T Consensus 356 GamvA~yl~~~~~~~ 370 (986)
T PLN02727 356 SAMVSRWKQYMTRSA 370 (986)
T ss_pred HHHHHHHHHHHcccc
Confidence 999999998866643
No 26
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.09 E-value=1.3e-09 Score=80.05 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhCCCCCCCHHHHH
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK-----AYNWDLTRAMAHVRQKRNCIKPNANFIT 107 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~-----~~~~~~~~a~~~v~~~rp~~~~~~~~~~ 107 (123)
.+||+|||.+|+||||++++...+. ....+..+++..+|+.|+....+..+..
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~ 278 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYV 278 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHH
Confidence 4699999999999999999865543 2348999999999999998888876544
No 27
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.09 E-value=8.2e-10 Score=74.43 Aligned_cols=87 Identities=17% Similarity=0.336 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCC-----CCCCCCcceEEEEEeccCCCcc---HH-------------------------HHHHHHHHHH
Q psy6369 2 DGVCHILNVTREI-----DNFFPGIFDYCNIRVYDDDKTD---LL-------------------------KHWDNTYKYI 48 (123)
Q Consensus 2 ~gI~~iin~~~~~-----~~~~~~~i~~~~ipi~d~~~~~---~~-------------------------~~~~~~~~~i 48 (123)
.||++|||++.+. |.....+++|.++|+.+..... +. +.+.++++.+
T Consensus 41 lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l 120 (164)
T PF13350_consen 41 LGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELL 120 (164)
T ss_dssp TT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred CCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 6899999999653 3445668999999997653321 10 2233334433
Q ss_pred HHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHH
Q psy6369 49 TSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHV 92 (123)
Q Consensus 49 ~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v 92 (123)
.+ ..+++|+||++|..|||.+++.. +...|.+.+++++..
T Consensus 121 ~~---~~~p~l~HC~aGKDRTG~~~all-l~~lGV~~~~I~~DY 160 (164)
T PF13350_consen 121 AD---APGPVLFHCTAGKDRTGVVAALL-LSLLGVPDEDIIADY 160 (164)
T ss_dssp H----TT--EEEE-SSSSSHHHHHHHHH-HHHTT--HHHHHHHH
T ss_pred cc---CCCcEEEECCCCCccHHHHHHHH-HHHcCCCHHHHHHHH
Confidence 33 34699999999999998877764 456799888877643
No 28
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.08 E-value=1.8e-09 Score=80.11 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=56.5
Q ss_pred EeccCCCccHHHHHHHHHHHHHHHHh--------C---CCeEEEEeCCCCchhHHHHHHHHHH-----HcCCCHHHHHHH
Q psy6369 28 RVYDDDKTDLLKHWDNTYKYITSAKN--------Q---GSKVLVHCKMGISRSASVVIAYAMK-----AYNWDLTRAMAH 91 (123)
Q Consensus 28 pi~d~~~~~~~~~~~~~~~~i~~~~~--------~---~~~vlVHC~~G~~Rs~~~~~ayl~~-----~~~~~~~~a~~~ 91 (123)
.|+|.+.+.-...|.+.++.+++... . .+||+|||.+|+||||++++...+. ....+..+++..
T Consensus 209 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~ 288 (323)
T PHA02746 209 DWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLK 288 (323)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 36676554433334444444443321 1 2699999999999999999865533 234899999999
Q ss_pred HHhhCCCCCCCHHHHHH
Q psy6369 92 VRQKRNCIKPNANFITQ 108 (123)
Q Consensus 92 v~~~rp~~~~~~~~~~~ 108 (123)
+|..|+.+..+..+...
T Consensus 289 lR~qR~~~Vqt~~QY~F 305 (323)
T PHA02746 289 IRKQRHSSVFLPEQYAF 305 (323)
T ss_pred HHhcccccCCCHHHHHH
Confidence 99999998888866554
No 29
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.08 E-value=1.9e-09 Score=75.61 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=59.6
Q ss_pred EeccCCCccHHHHHHHHHHHHHHHH-hCCCeEEEEeCCCCchhHHHHHHHHHHH-----cCCCHHHHHHHHHhhCCCCCC
Q psy6369 28 RVYDDDKTDLLKHWDNTYKYITSAK-NQGSKVLVHCKMGISRSASVVIAYAMKA-----YNWDLTRAMAHVRQKRNCIKP 101 (123)
Q Consensus 28 pi~d~~~~~~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rs~~~~~ayl~~~-----~~~~~~~a~~~v~~~rp~~~~ 101 (123)
.|.|...+.-...+-.+++.+.... ..+++++|||.+|.||||+++++.++.. ...+..+++..+|+.||.+..
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~ 221 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQ 221 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSS
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccC
Confidence 3455443322333334444444444 2348999999999999999999877642 238999999999999999999
Q ss_pred CHHHHHHHHH
Q psy6369 102 NANFITQLET 111 (123)
Q Consensus 102 ~~~~~~~L~~ 111 (123)
+..+...+..
T Consensus 222 ~~~qy~f~~~ 231 (235)
T PF00102_consen 222 SPEQYRFCYM 231 (235)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9887766543
No 30
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=99.00 E-value=1.4e-09 Score=72.36 Aligned_cols=58 Identities=19% Similarity=0.410 Sum_probs=43.7
Q ss_pred CcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHH
Q psy6369 20 GIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMK 79 (123)
Q Consensus 20 ~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~ 79 (123)
.++.|+++|+.|...|. .+.|++.++|+... .++..+.+||.+|.|||.++++.|.|.
T Consensus 91 ~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp TT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34899999999997664 66799999999998 557799999999999999988887764
No 31
>PHA02738 hypothetical protein; Provisional
Probab=98.98 E-value=6e-09 Score=77.26 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhCCCCCCCHHHHHH
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK-----AYNWDLTRAMAHVRQKRNCIKPNANFITQ 108 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~-----~~~~~~~~a~~~v~~~rp~~~~~~~~~~~ 108 (123)
.+||+|||.+|+||||++++...+. ....+..+++..+|+.|+....+..+...
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 3699999999999999998765433 22388999999999999998888866643
No 32
>KOG2283|consensus
Probab=98.96 E-value=3.7e-09 Score=80.90 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=82.0
Q ss_pred EEEEcCCCCCCCCCCc--ceEEEEEeccCCCccHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCchhHHHHHHHHHHHc
Q psy6369 6 HILNVTREIDNFFPGI--FDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQ--GSKVLVHCKMGISRSASVVIAYAMKAY 81 (123)
Q Consensus 6 ~iin~~~~~~~~~~~~--i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~--~~~vlVHC~~G~~Rs~~~~~ayl~~~~ 81 (123)
.|.|+++|.. +-+.. -+...++|+|+..+.+. .+..+++-++.++.. ...|.|||.+|.+|||++++|||+...
T Consensus 56 ~vyNL~~er~-yd~~~f~g~V~~~~~~Dh~~P~L~-~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~ 133 (434)
T KOG2283|consen 56 KVYNLSSERL-YDPSRFHGRVARFGFDDHNPPPLE-LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSG 133 (434)
T ss_pred EEEecCcccc-CCccccccceeecCCCCCCCCcHH-HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhh
Confidence 4789997432 11121 26777899999877654 466677778887774 347789999999999999999999976
Q ss_pred CC-CHHHHHHHHHhhC---C--CCCCCHHHHHHHHHHHhh
Q psy6369 82 NW-DLTRAMAHVRQKR---N--CIKPNANFITQLETYQVG 115 (123)
Q Consensus 82 ~~-~~~~a~~~v~~~r---p--~~~~~~~~~~~L~~~~~~ 115 (123)
-. ++++|+.++-.+| . .....+.+.+.+..|+..
T Consensus 134 ~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 134 ISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred hcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHH
Confidence 54 4999999999999 3 356677888999888873
No 33
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.96 E-value=2.3e-08 Score=76.92 Aligned_cols=111 Identities=17% Similarity=0.313 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCCCC--CCCCCcceEEEEEeccC--CCccHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCchhHHHHHH
Q psy6369 2 DGVCHILNVTREID--NFFPGIFDYCNIRVYDD--DKTDLLKHWDNTYKYITSAKNQ--GSKVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 2 ~gI~~iin~~~~~~--~~~~~~i~~~~ipi~d~--~~~~~~~~~~~~~~~i~~~~~~--~~~vlVHC~~G~~Rs~~~~~a 75 (123)
+....||+|..... ...+....|+++|+..+ +..++...+.++.+|+...+.+ +.+|||+|..|...|+.+++|
T Consensus 317 ~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLa 396 (451)
T PF04179_consen 317 SEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALA 396 (451)
T ss_pred CCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHH
Confidence 35678999987653 23345569999999765 6777888899999999999888 899999999999999999999
Q ss_pred HHHHHcCC--CH--------------HHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy6369 76 YAMKAYNW--DL--------------TRAMAHVRQKRNCIKPNANFITQLETY 112 (123)
Q Consensus 76 yl~~~~~~--~~--------------~~a~~~v~~~rp~~~~~~~~~~~L~~~ 112 (123)
.|+..++. .+ .+-+.++.+.+|.+.|+++.++++-.|
T Consensus 397 ILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 397 ILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 99887652 22 235778888899999999999998776
No 34
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.95 E-value=3.9e-09 Score=66.87 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=35.2
Q ss_pred CCCCeEEEEcCCCCCCC-C-----------CCcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCch
Q psy6369 1 MDGVCHILNVTREIDNF-F-----------PGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISR 68 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~~-~-----------~~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 68 (123)
+.|+++|||++.+.+.. . ..|++|.++|+..... . .+ .+..|.+......++||+||..|. |
T Consensus 25 ~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-~-~~---~v~~f~~~l~~~~~Pvl~hC~sG~-R 98 (110)
T PF04273_consen 25 AQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-T-EE---DVEAFADALESLPKPVLAHCRSGT-R 98 (110)
T ss_dssp HCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT----HH---HHHHHHHHHHTTTTSEEEE-SCSH-H
T ss_pred HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC-C-HH---HHHHHHHHHHhCCCCEEEECCCCh-h
Confidence 36999999999664421 1 2347999999985432 1 22 233333333345679999999998 8
Q ss_pred hHHHHH
Q psy6369 69 SASVVI 74 (123)
Q Consensus 69 s~~~~~ 74 (123)
|+++.+
T Consensus 99 a~~l~~ 104 (110)
T PF04273_consen 99 ASALWA 104 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 35
>KOG2386|consensus
Probab=98.93 E-value=2.8e-09 Score=80.13 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=88.3
Q ss_pred CeEEEEcCCCC-----CCCCCCcceEEEEEeccC---CCccHHHH-HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH
Q psy6369 4 VCHILNVTREI-----DNFFPGIFDYCNIRVYDD---DKTDLLKH-WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 4 I~~iin~~~~~-----~~~~~~~i~~~~ipi~d~---~~~~~~~~-~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
+.-++|++... +...+.++.|+.+..... +.....+. ...+-.|.++....++-|+|||++|.+|++-+++
T Consensus 64 vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~ 143 (393)
T KOG2386|consen 64 VGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLIC 143 (393)
T ss_pred EEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeee
Confidence 45677777543 344566788988887654 33333443 3445556666677889999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy6369 75 AYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 75 ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 117 (123)
+|||...+|+..+|++.+...||...........|...+....
T Consensus 144 ~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 144 AYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred eeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 9999999999999999999999998888888888876665544
No 36
>KOG0792|consensus
Probab=98.92 E-value=7.2e-09 Score=84.98 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=63.7
Q ss_pred eccCCCccHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCchhHHHHHH----HHHHH-cCCCHHHHHHHHHhhCCCCCCC
Q psy6369 29 VYDDDKTDLLKHWDNTYKYITSAKNQ-GSKVLVHCKMGISRSASVVIA----YAMKA-YNWDLTRAMAHVRQKRNCIKPN 102 (123)
Q Consensus 29 i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rs~~~~~a----yl~~~-~~~~~~~a~~~v~~~rp~~~~~ 102 (123)
|+|++.++-.+.|.+.++.++..++. +.+|+|||.+|+||||++++. |++.. .....-+.+..+|..|-.+.++
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 67777666677777788888887776 679999999999999999863 44443 3488999999999999988888
Q ss_pred HHHHHH
Q psy6369 103 ANFITQ 108 (123)
Q Consensus 103 ~~~~~~ 108 (123)
..+.+.
T Consensus 1116 ~~QYkF 1121 (1144)
T KOG0792|consen 1116 LSQYKF 1121 (1144)
T ss_pred hHHhhH
Confidence 876553
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.92 E-value=3.8e-09 Score=75.49 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=64.4
Q ss_pred cceEEEEE-eccCCCccHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCC------------
Q psy6369 21 IFDYCNIR-VYDDDKTDLLKHWDNTYKYITSAK---NQGSKVLVHCKMGISRSASVVIAYAMKAYNWD------------ 84 (123)
Q Consensus 21 ~i~~~~ip-i~d~~~~~~~~~~~~~~~~i~~~~---~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~------------ 84 (123)
.+.+++++ |.|...+++.+ ..++++-.. -++++++|||.||+||||++++.-.+...--+
T Consensus 184 ~Ihhf~y~nW~D~~~p~i~s----l~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~ 259 (302)
T COG5599 184 KIHHFQYINWVDFNVPDIRS----LTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQ 259 (302)
T ss_pred EEEEEEecCccccCCcCHHH----HHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhh
Confidence 35555554 78887775553 556666554 25789999999999999999876554432211
Q ss_pred --HHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy6369 85 --LTRAMAHVRQKRNCIKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 85 --~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 117 (123)
..+.+..+|++|..+..+..+...|.+.-..+.
T Consensus 260 D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 260 DLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 245678889999888888888887765555544
No 38
>KOG0790|consensus
Probab=98.76 E-value=9e-09 Score=78.17 Aligned_cols=84 Identities=14% Similarity=0.315 Sum_probs=58.7
Q ss_pred ceEEEEEeccCCCccHHHHHHHHHHHHHHHHh------CCCeEEEEeCCCCchhHHHHHHHHHH----HcC----CCHHH
Q psy6369 22 FDYCNIRVYDDDKTDLLKHWDNTYKYITSAKN------QGSKVLVHCKMGISRSASVVIAYAMK----AYN----WDLTR 87 (123)
Q Consensus 22 i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~------~~~~vlVHC~~G~~Rs~~~~~ayl~~----~~~----~~~~~ 87 (123)
.+|+.+-|+|++.+.-.- -+++|+++.-. .-|+|.|||++|+||||++++.-++. ..| ++...
T Consensus 415 ~~yh~~tWPDHGvP~dPg---~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~k 491 (600)
T KOG0790|consen 415 WHYHYLTWPDHGVPSDPG---GVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQK 491 (600)
T ss_pred hhhheeecccCCCcCCcc---HHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHH
Confidence 466666677774332111 24555555422 34699999999999999988644432 333 78999
Q ss_pred HHHHHHhhCCCCCCCHHHHHH
Q psy6369 88 AMAHVRQKRNCIKPNANFITQ 108 (123)
Q Consensus 88 a~~~v~~~rp~~~~~~~~~~~ 108 (123)
.+++||+.|+++..++.+.+.
T Consensus 492 tIqmVRsqRSGmVQTEaQYkF 512 (600)
T KOG0790|consen 492 TIQMVRSQRSGMVQTEAQYKF 512 (600)
T ss_pred HHHHHHHHhcchhhhHHhHHH
Confidence 999999999998888876654
No 39
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=4.5e-06 Score=53.20 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCCCCC-C-----------CcceEEEEEeccCCC-ccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q psy6369 1 MDGVCHILNVTREIDNFF-P-----------GIFDYCNIRVYDDDK-TDLLKHWDNTYKYITSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 1 ~~gI~~iin~~~~~~~~~-~-----------~~i~~~~ipi~d~~~-~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 67 (123)
+.|+++|||-+.+.+... | .+..|.++|+..... +.-.+ .|-+..-..+++||.||..|-
T Consensus 26 a~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~------~f~~Al~eaegPVlayCrsGt- 98 (130)
T COG3453 26 ALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVE------AFQRALDEAEGPVLAYCRSGT- 98 (130)
T ss_pred HhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHH------HHHHHHHHhCCCEEeeecCCc-
Confidence 369999999997765432 2 236999999976433 22222 222233345689999999997
Q ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy6369 68 RSASVVIAYAMKAYNWDLTRAMAHVRQK 95 (123)
Q Consensus 68 Rs~~~~~ayl~~~~~~~~~~a~~~v~~~ 95 (123)
||.++-..-- ...||+.+++..+-+..
T Consensus 99 Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 99 RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 8855444333 56789999988876654
No 40
>KOG0789|consensus
Probab=98.47 E-value=1.1e-06 Score=66.81 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=53.4
Q ss_pred eEEEEEeccCCCccHHHHHHHHHHHHH----HHHhCCCeEEEEeCCCCchhHHHHHHHH-HHH--c---CCCHHHHHHHH
Q psy6369 23 DYCNIRVYDDDKTDLLKHWDNTYKYIT----SAKNQGSKVLVHCKMGISRSASVVIAYA-MKA--Y---NWDLTRAMAHV 92 (123)
Q Consensus 23 ~~~~ipi~d~~~~~~~~~~~~~~~~i~----~~~~~~~~vlVHC~~G~~Rs~~~~~ayl-~~~--~---~~~~~~a~~~v 92 (123)
.|+...|+|.+.++... .++.++. ......+++.|||.+|.||||++++.-. +.. . ..+..+.+..+
T Consensus 266 ~~~~~~WPd~~~p~~~~---~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~i 342 (415)
T KOG0789|consen 266 HYHYINWPDHGAPDSVK---SILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREI 342 (415)
T ss_pred EEeeCCCccccCCcchH---HHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 44444466664444222 3444443 2222457999999999999999997542 222 2 25588888999
Q ss_pred HhhCCCCCCCHHHHH
Q psy6369 93 RQKRNCIKPNANFIT 107 (123)
Q Consensus 93 ~~~rp~~~~~~~~~~ 107 (123)
|..|+.+..+..+..
T Consensus 343 R~qR~~~vqt~~Qy~ 357 (415)
T KOG0789|consen 343 RYQRPGAVQSPLQYL 357 (415)
T ss_pred HHHhhhcccchhHHH
Confidence 999998777776554
No 41
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.44 E-value=1.4e-06 Score=62.60 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCCCCH
Q psy6369 43 NTYKYITSAKNQG-SKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNA 103 (123)
Q Consensus 43 ~~~~~i~~~~~~~-~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~ 103 (123)
.+.+++.-.+..+ ++||+||.+|..|+|.+++.|+....++....+-+++..-++......
T Consensus 123 ~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 123 RLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 3444444444444 899999999999999999999998877777788888888777555544
No 42
>KOG0791|consensus
Probab=98.42 E-value=2.1e-06 Score=64.00 Aligned_cols=89 Identities=11% Similarity=0.174 Sum_probs=57.9
Q ss_pred eEEEEEeccCCCccHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCchhHHHHHHHHH-HHc----CCCHHHHHHHHHhhC
Q psy6369 23 DYCNIRVYDDDKTDLLKHWDNTYKYITSAKN-QGSKVLVHCKMGISRSASVVIAYAM-KAY----NWDLTRAMAHVRQKR 96 (123)
Q Consensus 23 ~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~-~~~~vlVHC~~G~~Rs~~~~~ayl~-~~~----~~~~~~a~~~v~~~r 96 (123)
+++...|+|++.++-...+.+.+....+... ..++++|||.+|+||||++++.--+ +.. -.+.-.++..+|..|
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 4555556676544323323333333333333 2579999999999999999874332 222 255677888889999
Q ss_pred CCCCCCHHHHHHHHH
Q psy6369 97 NCIKPNANFITQLET 111 (123)
Q Consensus 97 p~~~~~~~~~~~L~~ 111 (123)
+.+.++..+...|.+
T Consensus 334 ~~mVqte~Qyvfl~~ 348 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQ 348 (374)
T ss_pred ccccchHHHHHHHHH
Confidence 999999887776653
No 43
>KOG1572|consensus
Probab=98.26 E-value=1.2e-05 Score=56.84 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCCCC-----CC-CCcceEEEEEeccCC-------CccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCch
Q psy6369 2 DGVCHILNVTREIDN-----FF-PGIFDYCNIRVYDDD-------KTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISR 68 (123)
Q Consensus 2 ~gI~~iin~~~~~~~-----~~-~~~i~~~~ipi~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 68 (123)
.+.++||.++.|..+ ++ ..+|++.++.+.... .....+.+..++.++-+ ..+.++||||..|..|
T Consensus 84 L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld--~~N~P~Lihc~rGkhR 161 (249)
T KOG1572|consen 84 LHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLD--KRNYPILIHCKRGKHR 161 (249)
T ss_pred hhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhc--ccCCceEEecCCCCcc
Confidence 357899999988421 22 345899999987542 22233445566666333 3568999999999999
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 69 SASVVIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 69 s~~~~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
+|+++.+.= +-++|++-..++..+..-.
T Consensus 162 tg~lVgclR-klq~W~lssil~Ey~~fa~ 189 (249)
T KOG1572|consen 162 TGCLVGCLR-KLQNWSLSSILDEYLRFAG 189 (249)
T ss_pred hhhhHHHHH-HHhccchhHHHHHHHHhcc
Confidence 999998754 5668999988887776543
No 44
>KOG4228|consensus
Probab=98.10 E-value=3.1e-06 Score=70.27 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=54.5
Q ss_pred eEEEEEeccCCCccHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCchhHHHHHHH-----HHHHcCCCHHHHHHHHH
Q psy6369 23 DYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQ----GSKVLVHCKMGISRSASVVIAY-----AMKAYNWDLTRAMAHVR 93 (123)
Q Consensus 23 ~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~----~~~vlVHC~~G~~Rs~~~~~ay-----l~~~~~~~~~~a~~~v~ 93 (123)
+|+...|+|++.+.... ..+.|+++...- .|+++|||.+|+||||++++.= +......+...-+..+|
T Consensus 697 qfhFt~Wpd~gvPe~~t---~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR 773 (1087)
T KOG4228|consen 697 QFHFTAWPDHGVPETPT---GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLR 773 (1087)
T ss_pred eeeeccCCCCCCcccch---HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHH
Confidence 45555577775554322 366777776653 3899999999999999977522 22233477777888888
Q ss_pred hhCCCCCCCHHH
Q psy6369 94 QKRNCIKPNANF 105 (123)
Q Consensus 94 ~~rp~~~~~~~~ 105 (123)
.+|+....+..+
T Consensus 774 ~QR~~mVQt~eQ 785 (1087)
T KOG4228|consen 774 RQRNNMVQTEEQ 785 (1087)
T ss_pred hccccccccHHH
Confidence 888876666544
No 45
>KOG0793|consensus
Probab=97.98 E-value=1.7e-05 Score=63.61 Aligned_cols=86 Identities=12% Similarity=0.246 Sum_probs=58.7
Q ss_pred eEEEEEeccCCCccHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCchhHHHHHHHHHHH------cCCCHHHHHHHHHhh
Q psy6369 23 DYCNIRVYDDDKTDLLKHWDNTYKYITSAKN-QGSKVLVHCKMGISRSASVVIAYAMKA------YNWDLTRAMAHVRQK 95 (123)
Q Consensus 23 ~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~-~~~~vlVHC~~G~~Rs~~~~~ayl~~~------~~~~~~~a~~~v~~~ 95 (123)
+|+.+.|.+.+.+.-...+.+.-+.+++..+ +.-+|+|||.+|-||||+-++.-|... ...+.-..++++|..
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 6777777777655545433333333444332 457999999999999999776555432 236777789999999
Q ss_pred CCCCCCCHHHHHH
Q psy6369 96 RNCIKPNANFITQ 108 (123)
Q Consensus 96 rp~~~~~~~~~~~ 108 (123)
||++.-+..+.+.
T Consensus 974 R~GmVaTkdQFef 986 (1004)
T KOG0793|consen 974 RPGMVATKDQFEF 986 (1004)
T ss_pred CCcceeehhhhHH
Confidence 9987776655543
No 46
>KOG4228|consensus
Probab=97.80 E-value=5.7e-05 Score=63.03 Aligned_cols=87 Identities=13% Similarity=0.216 Sum_probs=56.8
Q ss_pred ceEEEEEeccCCC--ccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH----HHHcC-CCHHHHHHHHHh
Q psy6369 22 FDYCNIRVYDDDK--TDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA----MKAYN-WDLTRAMAHVRQ 94 (123)
Q Consensus 22 i~~~~ipi~d~~~--~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl----~~~~~-~~~~~a~~~v~~ 94 (123)
++|..+|..+.++ ......+.++.+..++... .+++.|||.+|.+||++++++-+ |+..+ ++.-++++.+|.
T Consensus 984 fq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~-~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~ 1062 (1087)
T KOG4228|consen 984 FQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGA-DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRF 1062 (1087)
T ss_pred EEecCCcccCcCCCCcchhhhHHHHHHHHHhhcC-CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhh
Confidence 3556666554432 2222333444444443332 57999999999999999886433 33333 888899999999
Q ss_pred hCCCCCCCHHHHHHH
Q psy6369 95 KRNCIKPNANFITQL 109 (123)
Q Consensus 95 ~rp~~~~~~~~~~~L 109 (123)
.||.+.-...+.+.+
T Consensus 1063 ~rp~mv~t~~QY~fc 1077 (1087)
T KOG4228|consen 1063 QRPGMVDTSDQYQFC 1077 (1087)
T ss_pred cCccccCcHHHHHHH
Confidence 999877777655544
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.51 E-value=0.00054 Score=45.20 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=40.3
Q ss_pred ccCCCccHHHHHHHHHHHHHHHHhC---CCeEEEEeCCCCch----hHHHHHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 30 YDDDKTDLLKHWDNTYKYITSAKNQ---GSKVLVHCKMGISR----SASVVIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 30 ~d~~~~~~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~R----s~~~~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
.|.++.++.. +.+.+..+++.++. .++.+|||++.-.+ ++.++.+|+|...+|++++|++-+.+.-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5678888775 44455556665554 56888888775544 36777899999999999999999988864
No 48
>KOG4471|consensus
Probab=96.83 E-value=0.0026 Score=50.56 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH-HHHHH
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI-AYAMK 79 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~-ayl~~ 79 (123)
+..++...++....+.+|||||..|..||+-+++ |.||.
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 3455566666677889999999999999988774 55554
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=95.15 E-value=0.084 Score=39.95 Aligned_cols=22 Identities=41% Similarity=0.758 Sum_probs=17.3
Q ss_pred hCCCeEEEEeCCCCchhHHHHH
Q psy6369 53 NQGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
.+|..|||||..|..||+.++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 5789999999999999976654
No 50
>KOG1089|consensus
Probab=94.29 E-value=0.12 Score=41.29 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=23.4
Q ss_pred HHHHHHHHHh-CCCeEEEEeCCCCchhHHHHH
Q psy6369 44 TYKYITSAKN-QGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 44 ~~~~i~~~~~-~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
...++.+.+. +|-+|||||..|..||..|+.
T Consensus 332 ~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 332 AAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 4445555555 668999999999999977663
No 51
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.11 Score=31.74 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=34.0
Q ss_pred eEEEEcCCCCCCCCCCc-ce-EEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHH
Q psy6369 5 CHILNVTREIDNFFPGI-FD-YCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMK 79 (123)
Q Consensus 5 ~~iin~~~~~~~~~~~~-i~-~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~ 79 (123)
..+++++... .+...+ .. ..++|+.+........ . ..+.+++.|+|..|. ||.. ++.+|..
T Consensus 21 ~~liDvR~~~-e~~~~~i~~~~~~ip~~~~~~~~~~~-----~------~~~~~~ivv~C~~G~-rS~~-aa~~L~~ 83 (110)
T COG0607 21 AVLLDVREPE-EYERGHIPGAAINIPLSELKAAENLL-----E------LPDDDPIVVYCASGV-RSAA-AAAALKL 83 (110)
T ss_pred CEEEeccChh-HhhhcCCCcceeeeecccchhhhccc-----c------cCCCCeEEEEeCCCC-ChHH-HHHHHHH
Confidence 4577777662 222212 23 6666666543211110 0 566789999999998 7744 4444444
No 52
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.92 E-value=0.29 Score=29.72 Aligned_cols=28 Identities=39% Similarity=0.613 Sum_probs=18.8
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
.++.+|+|+|..|. ||... +.+| ...|.
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCch-hHHHH-HHHH-HHhCC
Confidence 46679999999984 88543 3344 44454
No 53
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=92.68 E-value=0.6 Score=29.83 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=20.7
Q ss_pred HhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 52 KNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..++.+|+|.|..|-.||..++ +++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4567899999986545776443 66676665
No 54
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=90.41 E-value=1.3 Score=27.48 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=14.6
Q ss_pred CCCeEEEEeCCCCchhHHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~ 73 (123)
...+|++||..|-.||...+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 34689999998766875543
No 55
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=90.27 E-value=0.58 Score=34.46 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHh----CCC---eEEEEeCCCCchhHHHHH
Q psy6369 39 KHWDNTYKYITSAKN----QGS---KVLVHCKMGISRSASVVI 74 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~----~~~---~vlVHC~~G~~Rs~~~~~ 74 (123)
+++....++++.++. .|+ .|-|=|++|..||++++=
T Consensus 219 ~f~~~~~~~l~~~lp~y~~egk~~ltIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 219 EFLEKIEDLLDFLLPRYEKEGKSYLTIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCCCcCcHHHHHH
Confidence 444555444444322 343 577999999999988873
No 56
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=90.24 E-value=1.1 Score=28.23 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=18.5
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
....+|+++|..|. ||...+ . .+...|.
T Consensus 62 ~~~~~ivv~C~~G~-rs~~aa-~-~L~~~G~ 89 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAAA-E-AAAQAGF 89 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHHH-H-HHHHCCC
Confidence 46789999999985 776543 2 3344453
No 57
>PLN02160 thiosulfate sulfurtransferase
Probab=89.29 E-value=0.72 Score=30.01 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=19.4
Q ss_pred HhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 52 KNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
...+++|++||..|. ||...+.. | ...|.
T Consensus 78 ~~~~~~IivyC~sG~-RS~~Aa~~-L-~~~G~ 106 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKATTE-L-VAAGY 106 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHHHHH-H-HHcCC
Confidence 356789999999995 88655433 3 44454
No 58
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=88.24 E-value=1.9 Score=26.48 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=18.0
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
++.+|+|+|..|. ||.. ++. .+...|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~-~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQ-SLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHH-HHHHCCC
Confidence 4579999999997 7733 333 3345565
No 59
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=86.93 E-value=1.1 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHh----CCC---eEEEEeCCCCchhHHHHH
Q psy6369 37 LLKHWDNTYKYITSAKN----QGS---KVLVHCKMGISRSASVVI 74 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~----~~~---~vlVHC~~G~~Rs~~~~~ 74 (123)
..++++.+.++++.++. .|+ .|-|=|++|..||++++=
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 220 VEEFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 33555555555555433 342 477999999999988874
No 60
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=86.43 E-value=5.2 Score=24.02 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=40.2
Q ss_pred eEEEEcCCCCCCCCCCcc-eEEEEEeccC---CCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH---HHH
Q psy6369 5 CHILNVTREIDNFFPGIF-DYCNIRVYDD---DKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI---AYA 77 (123)
Q Consensus 5 ~~iin~~~~~~~~~~~~i-~~~~ipi~d~---~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~---ayl 77 (123)
..|||++.... +..+++ .-.++|+... ......+.+............++..|+++|..|. |+...+. +|.
T Consensus 14 ~~liD~R~~~~-~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~ 91 (113)
T PF00581_consen 14 VLLIDVRSPEE-YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWI 91 (113)
T ss_dssp EEEEEESSHHH-HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHH
T ss_pred eEEEEeCCHHH-HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHH
Confidence 46788885432 111222 2367777432 2232333344444444444456778999997776 5544443 343
Q ss_pred HHHcCC
Q psy6369 78 MKAYNW 83 (123)
Q Consensus 78 ~~~~~~ 83 (123)
+...|.
T Consensus 92 l~~~g~ 97 (113)
T PF00581_consen 92 LKKLGF 97 (113)
T ss_dssp HHHTTT
T ss_pred HHHcCC
Confidence 555554
No 61
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=86.41 E-value=3 Score=31.14 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=17.2
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
.+..|+|+|..|-.||..++ +++...|.
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa--~~L~~~G~ 100 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA--WLLAQIGF 100 (311)
T ss_pred CCCcEEEEECCCChHHHHHH--HHHHHcCC
Confidence 34459999975556886543 34444454
No 62
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=85.46 E-value=2.1 Score=23.40 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhC
Q psy6369 70 ASVVIAYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 70 ~~~~~ayl~~~~~~~~~~a~~~v~~~r 96 (123)
..-+...||..+|++.++|+++++..-
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~A 41 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQA 41 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 445667899999999999999998753
No 63
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=85.10 E-value=5.8 Score=25.64 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=38.1
Q ss_pred ceEEEEEeccCC-CccHHHHHHHHHHHHHHHHhCCCe-EEEEeCCCCchhHHHHHHHHHHHcC
Q psy6369 22 FDYCNIRVYDDD-KTDLLKHWDNTYKYITSAKNQGSK-VLVHCKMGISRSASVVIAYAMKAYN 82 (123)
Q Consensus 22 i~~~~ipi~d~~-~~~~~~~~~~~~~~i~~~~~~~~~-vlVHC~~G~~Rs~~~~~ayl~~~~~ 82 (123)
+.-..+|++|.. ..+....++.+.+.|.+..++++. -+.-|-+|--++-++.++|.+.-++
T Consensus 54 i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 54 VHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 444445566653 334455566667777777776653 3444566655788888888887766
No 64
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=85.09 E-value=4 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=18.1
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNWD 84 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~ 84 (123)
++.+|+++|..|. ||... +.+|. ..|.+
T Consensus 57 ~~~~vv~~c~~g~-rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHGG-RSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCCc-hHHHH-HHHHH-HcCCc
Confidence 4679999999984 77443 33343 35543
No 65
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=84.94 E-value=4.6 Score=24.91 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=14.6
Q ss_pred CCCeEEEEeCCCCchhHHHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
+..+|+++|..+-.||...+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCeEEEEeecCCcchHHHHH
Confidence 346999999855468766543
No 66
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=84.56 E-value=1.4 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=18.3
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+++|+|+|..|. ||.. ++..| ...|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCc
Confidence 35679999999995 7744 33333 44454
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=84.52 E-value=2.6 Score=31.43 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=19.2
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
++++|+++|.+|. ||. .+++||.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHHH-cCC
Confidence 5689999999997 884 44555544 454
No 68
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=84.19 E-value=4.3 Score=28.22 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
+.+.+.++.+.+.+.+.++++|++. |.|+|++++.-+-
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 3456778899999999999999986 8888877765433
No 69
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=83.73 E-value=2.1 Score=28.74 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=20.5
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
.++.+|++.|..|..||.. +++++...|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3668999999998877765 3445555554
No 70
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=83.61 E-value=2.9 Score=24.88 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=17.8
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+..+|+|+|..|...++..++. .+...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~-~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAAR-RLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHH-HHHHcCc
Confidence 3679999999986443344443 4444443
No 71
>PRK01415 hypothetical protein; Validated
Probab=83.51 E-value=2.9 Score=30.18 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=19.5
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
.++++|+++|++|. ||. .++++|. ..|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~-kAa~~L~-~~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCE-KSTSLLK-SIGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HHH-HHHHHHH-HcCC
Confidence 46789999999996 874 4455554 3454
No 72
>PRK05320 rhodanese superfamily protein; Provisional
Probab=83.51 E-value=3.1 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.1
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
++++|+++|+.|. ||.. ++.+|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCC
Confidence 5689999999996 8844 5555654 343
No 73
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=80.87 E-value=3.2 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.530 Sum_probs=17.8
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
++.+|+++|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 3579999999987 7643 33434 55554
No 74
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=80.39 E-value=4.5 Score=25.18 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=19.0
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNWD 84 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~ 84 (123)
..+.+|+++|..| +++++.++. ++...|.+
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 3578999999998 444454443 44445543
No 75
>smart00400 ZnF_CHCC zinc finger.
Probab=79.28 E-value=3.3 Score=22.47 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=23.1
Q ss_pred EEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHH
Q psy6369 59 LVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHV 92 (123)
Q Consensus 59 lVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v 92 (123)
..||.+ -+.+|-+ +.++|...+++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 578875 3455544 5667788899999999875
No 76
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=79.26 E-value=2.1 Score=26.20 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=13.2
Q ss_pred CeEEEEeCCCCchhHHHH
Q psy6369 56 SKVLVHCKMGISRSASVV 73 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~ 73 (123)
.+||+.|.+|.+ |+.++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 589999999998 44433
No 77
>KOG0235|consensus
Probab=78.81 E-value=9.5 Score=27.02 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=34.9
Q ss_pred CCccHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 33 DKTDLLKHWDNTYKYITSAKN----QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
...++.....++..|+++... .|+.|+|+|.+..-|+ +++...|.+.++.+..
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~------i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRA------IVKHLEGISDEAIKEL 186 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHH------HHHHHhcCCHhhhhhe
Confidence 455566667777777776543 6899999987744333 4566667777766543
No 78
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=78.44 E-value=2.8 Score=24.92 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.0
Q ss_pred CeEEEEeCCCCchhHH
Q psy6369 56 SKVLVHCKMGISRSAS 71 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~ 71 (123)
++|++.|.+|+|-|..
T Consensus 1 ~kilvvCg~G~gtS~m 16 (87)
T cd05567 1 KKIVFACDAGMGSSAM 16 (87)
T ss_pred CEEEEECCCCccHHHH
Confidence 4799999999987633
No 79
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=77.39 E-value=7.3 Score=29.81 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=11.6
Q ss_pred HhCCCeEEEEeCCCC
Q psy6369 52 KNQGSKVLVHCKMGI 66 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~ 66 (123)
+.+|..||.||.+|.
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 335789999998873
No 80
>PRK07411 hypothetical protein; Validated
Probab=76.31 E-value=5.5 Score=30.58 Aligned_cols=28 Identities=36% Similarity=0.646 Sum_probs=18.8
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNWD 84 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~ 84 (123)
++.+|+|+|..|. ||.. ++ ..++..|.+
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa-~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-AL-GILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HH-HHHHHcCCC
Confidence 4679999999887 8844 33 344555653
No 81
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=74.95 E-value=5.7 Score=23.60 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=18.2
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+.+|+|+|..| +||..+ +.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCC
Confidence 4567999999877 477543 3444 44554
No 82
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=74.81 E-value=5 Score=24.55 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=24.5
Q ss_pred EEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhC
Q psy6369 59 LVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 59 lVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~r 96 (123)
..||.+ -|.+|-+ +.++|...+++..+|++++.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 689985 4566654 55678899999999999998754
No 83
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=74.07 E-value=5.2 Score=26.54 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q psy6369 43 NTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 43 ~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
-++.+++++...|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 5789999999999999999954
No 84
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=73.48 E-value=5.6 Score=23.72 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=18.7
Q ss_pred HhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 52 KNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+.+..+|+|+|..|. ||.. +++.+...|.
T Consensus 58 ~~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASGW-RSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCCC-cHHH--HHHHHHHcCh
Confidence 346789999998874 7643 3344455553
No 85
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=73.42 E-value=3.4 Score=24.33 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=12.4
Q ss_pred eEEEEeCCCCchhHH
Q psy6369 57 KVLVHCKMGISRSAS 71 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~ 71 (123)
+|++-|.+|++-|-.
T Consensus 1 kIlvvC~~Gi~TS~~ 15 (90)
T PF02302_consen 1 KILVVCGSGIGTSLM 15 (90)
T ss_dssp EEEEEESSSSHHHHH
T ss_pred CEEEECCChHHHHHH
Confidence 689999999986643
No 86
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=73.26 E-value=10 Score=28.68 Aligned_cols=14 Identities=43% Similarity=0.956 Sum_probs=11.1
Q ss_pred HhCCC----eEEEEeCCC
Q psy6369 52 KNQGS----KVLVHCKMG 65 (123)
Q Consensus 52 ~~~~~----~vlVHC~~G 65 (123)
...|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34577 899999887
No 87
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=72.86 E-value=4.7 Score=29.31 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 63 KMGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 63 ~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
--|+||||+.+.+-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 3499999988887655 48888887654
No 88
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=72.77 E-value=4.2 Score=29.87 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.1
Q ss_pred eEEEEeCCCCchhHHHHH
Q psy6369 57 KVLVHCKMGISRSASVVI 74 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~~ 74 (123)
.|.|=|++|..||++++=
T Consensus 245 TIaIGCTGGqHRSV~iae 262 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred EEEEccCCCccchHHHHH
Confidence 456899999999998873
No 89
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=72.22 E-value=9.8 Score=28.83 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.2
Q ss_pred HhCCCeEEEEeCCCCchh
Q psy6369 52 KNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs 69 (123)
+..|..||.||.+|..++
T Consensus 145 I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred ccCCCEEEEecCCccccc
Confidence 346789999999997664
No 90
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=71.79 E-value=8.7 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 40 HWDNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
...-+++.++++.++|.+|+|+|...
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34558889999999999999999654
No 91
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=71.78 E-value=13 Score=21.76 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=18.0
Q ss_pred HhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 52 KNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..++.+|+|+|..|. ||.. ++..+...|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~--a~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ--LAQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH--HHHHHHHcCC
Confidence 346789999999775 5533 2334444453
No 92
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=71.63 E-value=11 Score=23.30 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=13.7
Q ss_pred CCCeEEEEeCCCCchhHHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~ 73 (123)
.+.+|+++|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 456899999988 4665543
No 93
>PRK13938 phosphoheptose isomerase; Provisional
Probab=71.06 E-value=20 Score=24.92 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHH
Q psy6369 36 DLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAM 78 (123)
Q Consensus 36 ~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~ 78 (123)
.+.+.+.++.+.+.+.+++|++|++. |.|+|+.++..+-+
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~ 65 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAA 65 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHH
Confidence 45667788888888889999999875 67777776654433
No 94
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=70.74 E-value=4.5 Score=25.21 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=11.2
Q ss_pred CeEEEEeCCCCchh
Q psy6369 56 SKVLVHCKMGISRS 69 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs 69 (123)
++||+.|.+|.+-|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 37999999999443
No 95
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=70.62 E-value=9.5 Score=22.87 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=17.2
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+.+|+++|..|. ||..++. .+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~--~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA--FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH--HHHHcCC
Confidence 579999999987 6654333 4444454
No 96
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=70.30 E-value=19 Score=25.66 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=37.8
Q ss_pred EEeccC-CCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcC
Q psy6369 27 IRVYDD-DKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYN 82 (123)
Q Consensus 27 ipi~d~-~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~ 82 (123)
.|++|- ...+.....+.+.+.|.+..++.+..+.-|-+|--++-++.++|.+.-+|
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 445554 33334455677777788877775566666777776888888888777766
No 97
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=69.68 E-value=5.9 Score=27.59 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.6
Q ss_pred HHHHHHcCCCHHHHHHHHHhhC
Q psy6369 75 AYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 75 ayl~~~~~~~~~~a~~~v~~~r 96 (123)
..||..+|++.++|++++|..-
T Consensus 152 glLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 152 GLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH
Confidence 5689999999999999999854
No 98
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=69.39 E-value=31 Score=27.03 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeC----------------CCCchhHHHHHHHHHHHcCCC-HHHHHHHH
Q psy6369 41 WDNTYKYITSAKNQG-SKVLVHCK----------------MGISRSASVVIAYAMKAYNWD-LTRAMAHV 92 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~-~~vlVHC~----------------~G~~Rs~~~~~ayl~~~~~~~-~~~a~~~v 92 (123)
.+..++.|+++.++| .=+-|||. .=+||.|++.++|++....-| +.+-++++
T Consensus 142 ~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~l 211 (431)
T PRK13352 142 EDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYL 211 (431)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHH
Confidence 456777888887777 45669993 236899999999999866533 44433333
No 99
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=68.88 E-value=8.1 Score=23.00 Aligned_cols=18 Identities=22% Similarity=0.702 Sum_probs=13.7
Q ss_pred hCCCeEEEEeCCCCchhHH
Q psy6369 53 NQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~ 71 (123)
..+.+|+++|..|. ||..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 45679999999986 5543
No 100
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=68.84 E-value=10 Score=22.76 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=18.5
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
++.+|+++|..|. ||.. +++++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA--AAELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHH--HHHHHHHcCC
Confidence 4679999999986 6643 3445555564
No 101
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=68.36 E-value=9.2 Score=24.90 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 42 DNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 42 ~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
.-+++.++++.++|.+|+|+|..-
T Consensus 16 ~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 16 RFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 457889999999999999999653
No 102
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=68.13 E-value=6.2 Score=28.99 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=19.6
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 64 MGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 64 ~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
=|.||||+-+.+-++. |++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 4999998887775553 8888887554
No 103
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=67.52 E-value=6.7 Score=28.50 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=19.4
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 64 MGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 64 ~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
=|.||||+-+.+-++ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 489999888877655 38888887554
No 104
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=67.46 E-value=17 Score=27.64 Aligned_cols=16 Identities=31% Similarity=0.684 Sum_probs=12.6
Q ss_pred HhCCCeEEEEeCCCCc
Q psy6369 52 KNQGSKVLVHCKMGIS 67 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~ 67 (123)
+..|..||.||.+|.-
T Consensus 144 I~~g~~ILThc~sg~l 159 (344)
T PRK05720 144 IRKGQGILTHCNAGWL 159 (344)
T ss_pred ccCCCEEEEecCCCcc
Confidence 3467899999998863
No 105
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=67.22 E-value=4.1 Score=29.65 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=17.7
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+++|+++|..|. ||+. +. +++...|.
T Consensus 229 ~~~~~ii~yC~~G~-~A~~-~~-~~l~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAV-VV-LALATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HHHH-HH-HHHHHcCC
Confidence 45679999999987 5533 32 23344554
No 106
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=66.71 E-value=7 Score=28.58 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=19.7
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 64 MGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 64 ~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
-|.||||+-+.+-++ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999888777555 48888887554
No 107
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=66.68 E-value=20 Score=27.21 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=19.1
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
++.+|+|+|..|-.||..++ +++...|.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 57899999976666987754 34444453
No 108
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.61 E-value=10 Score=23.49 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCc
Q psy6369 42 DNTYKYITSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 42 ~~~~~~i~~~~~~~~~vlVHC~~G~~ 67 (123)
..+++.|++.....++|+.|-+.|-.
T Consensus 11 ~aAl~Li~~l~~~hgpvmFHQSGGCC 36 (116)
T COG3564 11 PAALDLIAELQAEHGPVMFHQSGGCC 36 (116)
T ss_pred HHHHHHHHHHHHhcCCEEEeccCCcc
Confidence 46888999999999999999777654
No 109
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=66.41 E-value=8.7 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=16.4
Q ss_pred hCCCeEEEEeC-CCCchhHHHHHHHHHH
Q psy6369 53 NQGSKVLVHCK-MGISRSASVVIAYAMK 79 (123)
Q Consensus 53 ~~~~~vlVHC~-~G~~Rs~~~~~ayl~~ 79 (123)
.+..+|++||. +| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 45689999997 56 57755 3334443
No 110
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=66.01 E-value=13 Score=24.81 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
..-+.+.++++..+|.+|+|+|...
T Consensus 15 ~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 15 LKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 3458889999999999999999665
No 111
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=65.54 E-value=14 Score=22.72 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=13.7
Q ss_pred CCCeEEEEeCCCCchhHHH
Q psy6369 54 QGSKVLVHCKMGISRSASV 72 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~ 72 (123)
.+.+|+++|..|. ||...
T Consensus 57 ~~~~vvlyC~~G~-rS~~a 74 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA 74 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH
Confidence 4568999999995 77554
No 112
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=65.52 E-value=26 Score=24.63 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCccHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 33 DKTDLLKHWDNTYKYITSAKN----QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
+.+++.+...++..++++... .+++|||-|++|.-|+. +++ ..+++.++...
T Consensus 148 gGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~l---l~~---~~~~~~~~~~~ 203 (228)
T PRK14116 148 GGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRAL---TKY---IENISDEDIMN 203 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHHH---HHH---HhCCCHHHHHh
Confidence 345566777888888877542 46899999999987762 222 23677765443
No 113
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=65.51 E-value=9 Score=23.99 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=18.5
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+++|+++|..|. ||...+ . .+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~-~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-R-KLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-H-HHHHcCC
Confidence 45689999999995 875333 2 3344455
No 114
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=64.88 E-value=36 Score=26.55 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeC----------------CCCchhHHHHHHHHHHHcCCC-----HHHHHHHHHh
Q psy6369 41 WDNTYKYITSAKNQG-SKVLVHCK----------------MGISRSASVVIAYAMKAYNWD-----LTRAMAHVRQ 94 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~-~~vlVHC~----------------~G~~Rs~~~~~ayl~~~~~~~-----~~~a~~~v~~ 94 (123)
.+.+++.|++..++| .=+-|||. .=+||.|++.++|++....-+ +++.++..|+
T Consensus 138 ~d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~ 213 (420)
T PF01964_consen 138 EDDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKE 213 (420)
T ss_dssp HHHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHH
Confidence 567788888887777 45669994 236999999999999976644 3445555554
No 115
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=64.64 E-value=26 Score=24.59 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=32.7
Q ss_pred CccHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAKN----QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAM 89 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~ 89 (123)
.+++.+...++.+++++... .+++|||-|.+|.-|+.. + ...+++.++..
T Consensus 148 GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ll---~---~~l~~~~~~~~ 201 (227)
T PRK14118 148 AENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRALA---K---HIEGISDADIM 201 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHHHH---H---HHhCCCHHHHh
Confidence 45566677788888876543 467999999999876521 2 22366766544
No 116
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=64.42 E-value=58 Score=25.51 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeC----------------CCCchhHHHHHHHHHHHcCCC-HHHHHH
Q psy6369 41 WDNTYKYITSAKNQG-SKVLVHCK----------------MGISRSASVVIAYAMKAYNWD-LTRAMA 90 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~-~~vlVHC~----------------~G~~Rs~~~~~ayl~~~~~~~-~~~a~~ 90 (123)
.+..++.|+++.++| .=+-|||. .=+||.|++.++|++....-| +.+-++
T Consensus 139 ~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD 206 (423)
T TIGR00190 139 EDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFD 206 (423)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHH
Confidence 456777888887777 45669994 236899999999999876533 444333
No 117
>PRK01112 phosphoglyceromutase; Provisional
Probab=64.28 E-value=27 Score=24.67 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCccHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 33 DKTDLLKHWDNTYKYITSAK----NQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~----~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
+.+++.+...++..++++.. ..+++|+|-|.+|.-|+.. +++ .+++.+++..+
T Consensus 147 ~GES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~---~~l---l~~~~~~~~~~ 203 (228)
T PRK01112 147 QGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLI---MDL---EKLSEEEVLSL 203 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHH---HHH---hCCCHHHHhhc
Confidence 44566677777777777542 2567999999998877633 222 36777766643
No 118
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=62.99 E-value=21 Score=22.16 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=13.6
Q ss_pred CeEEEEeCCCCchhHHH
Q psy6369 56 SKVLVHCKMGISRSASV 72 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~ 72 (123)
.+||+.|.+|.|-|-.+
T Consensus 4 kkIllvC~~G~sTSll~ 20 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLV 20 (106)
T ss_pred CEEEEECCCCccHHHHH
Confidence 58999999999866433
No 119
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=62.95 E-value=6.7 Score=28.99 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=14.2
Q ss_pred HhCCCeEEEEeCCCCchh
Q psy6369 52 KNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs 69 (123)
+...+.|.++|..|..=|
T Consensus 231 i~~~~~vI~yCgsG~~As 248 (285)
T COG2897 231 IDPDKEVIVYCGSGVRAS 248 (285)
T ss_pred CCCCCCEEEEcCCchHHH
Confidence 556789999999998433
No 120
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=62.56 E-value=33 Score=20.90 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHH---------HHHHHHhhCC
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTR---------AMAHVRQKRN 97 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~---------a~~~v~~~rp 97 (123)
++.+.++++...+.|.++++....+ +||..-.+..| ...|.+... +..++++..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 3457889999999998888876554 47766666656 556754333 6677777544
No 121
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=62.45 E-value=19 Score=27.59 Aligned_cols=12 Identities=50% Similarity=1.082 Sum_probs=9.2
Q ss_pred CCCeEEEEeCCCC
Q psy6369 54 QGSKVLVHCKMGI 66 (123)
Q Consensus 54 ~~~~vlVHC~~G~ 66 (123)
+|. ||-||.+|-
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 344 999998865
No 122
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=61.26 E-value=30 Score=21.99 Aligned_cols=52 Identities=4% Similarity=-0.090 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEe-CCCCchhHHHHHHHHHHHcC----CCHHHHHHHHHhhCC
Q psy6369 40 HWDNTYKYITSAKNQGSKVLVHC-KMGISRSASVVIAYAMKAYN----WDLTRAMAHVRQKRN 97 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~~vlVHC-~~G~~Rs~~~~~ayl~~~~~----~~~~~a~~~v~~~rp 97 (123)
.+..+...+....++. + ..|.-|++.+++..++...| .+.+++.+++...-.
T Consensus 50 i~~kAa~l~~~l~~~H------pF~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~ 106 (121)
T TIGR01550 50 IFEVSAVLLYALIRSH------PFNNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVAT 106 (121)
T ss_pred HHHHHHHHHHHHHHhC------CCccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHC
Confidence 3445555555554432 3 56999999999988888777 557777777777654
No 123
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=61.11 E-value=8 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.1
Q ss_pred eEEEEeCCCCchhHHH
Q psy6369 57 KVLVHCKMGISRSASV 72 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~ 72 (123)
+||+-|.+|++-|-.+
T Consensus 4 kILvvCgsG~~TS~m~ 19 (94)
T PRK10310 4 KIIVACGGAVATSTMA 19 (94)
T ss_pred eEEEECCCchhHHHHH
Confidence 7999999999877443
No 124
>PRK13462 acid phosphatase; Provisional
Probab=60.66 E-value=33 Score=23.64 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=33.3
Q ss_pred CCccHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHH
Q psy6369 33 DKTDLLKHWDNTYKYITSAKN--QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAM 89 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~ 89 (123)
+.+++.+...++.+++++... .+++|+|-|.+|..|+.. ....+++++...
T Consensus 115 ~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~ll------~~~l~~~~~~~~ 167 (203)
T PRK13462 115 GGESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRAVI------TRWVELPLAEGS 167 (203)
T ss_pred CCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHH------HHHhCCCHHHhh
Confidence 345666777788888887654 357899999998876522 223456665543
No 125
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=60.06 E-value=19 Score=21.97 Aligned_cols=29 Identities=7% Similarity=0.157 Sum_probs=18.3
Q ss_pred hCCCeEEEEeCCCCc-hhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGIS-RSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~-Rs~~~~~ayl~~~~~~ 83 (123)
..+.+|+|+|..|.+ ||..++ +.+...|.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a--~~l~~~G~ 91 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAA--LKLAELGF 91 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHH--HHHHHcCC
Confidence 467899999998863 544333 33344554
No 126
>KOG1530|consensus
Probab=59.94 E-value=15 Score=24.13 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=13.1
Q ss_pred CeEEEEeCCCCchhHHH
Q psy6369 56 SKVLVHCKMGISRSASV 72 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~ 72 (123)
..|+++|..|. ||...
T Consensus 90 ~eiIf~C~SG~-Rs~~A 105 (136)
T KOG1530|consen 90 KEIIFGCASGV-RSLKA 105 (136)
T ss_pred CcEEEEeccCc-chhHH
Confidence 49999999998 88543
No 127
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.34 E-value=8.9 Score=23.68 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=12.1
Q ss_pred eEEEEeCCCCchhHHHHHH
Q psy6369 57 KVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~~a 75 (123)
+||+.|.+| -|.++++-
T Consensus 2 ~Ill~C~~G--aSSs~la~ 18 (99)
T cd05565 2 NVLVLCAGG--GTSGLLAN 18 (99)
T ss_pred EEEEECCCC--CCHHHHHH
Confidence 589999777 45565553
No 128
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=58.66 E-value=5.8 Score=24.44 Aligned_cols=10 Identities=30% Similarity=1.198 Sum_probs=8.6
Q ss_pred CeEEEEeCCC
Q psy6369 56 SKVLVHCKMG 65 (123)
Q Consensus 56 ~~vlVHC~~G 65 (123)
.+++|||.=|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 5999999876
No 129
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=58.43 E-value=15 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.4
Q ss_pred CCCCchhHHHHHHHHHHHcC
Q psy6369 63 KMGISRSASVVIAYAMKAYN 82 (123)
Q Consensus 63 ~~G~~Rs~~~~~ayl~~~~~ 82 (123)
..|++|+.+.+++||+....
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E 41 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDE 41 (124)
T ss_pred HcCCCchHHHHHHHHhcCcc
Confidence 45799999999999987543
No 130
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=58.34 E-value=15 Score=26.15 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=31.5
Q ss_pred eEEEEE-eccCCCccHHHHHHHHHHHHHHHHhCC-CeEEEEeC-CCCchhHHHHHHHHHH
Q psy6369 23 DYCNIR-VYDDDKTDLLKHWDNTYKYITSAKNQG-SKVLVHCK-MGISRSASVVIAYAMK 79 (123)
Q Consensus 23 ~~~~ip-i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~vlVHC~-~G~~Rs~~~~~ayl~~ 79 (123)
..+-+. +.|.+..+-.+++. ..++-+.++| ++|+|||- .|..-++.-+..|+-.
T Consensus 29 ~lHl~GLlSdGGVHSh~~Hl~---al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~ 85 (223)
T PF06415_consen 29 RLHLMGLLSDGGVHSHIDHLF---ALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEE 85 (223)
T ss_dssp -EEEEEEESS-SSS--HHHHH---HHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHH
T ss_pred eEEEEEEecCCCccccHHHHH---HHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHH
Confidence 334444 46667666555444 4555555666 67999995 4888888877777643
No 131
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=58.13 E-value=36 Score=23.89 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAKN----QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAM 89 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~ 89 (123)
.+++.+...++..++++... .+++|+|-|.+|.-|+. ++++ .+++.++..
T Consensus 149 GES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~l---~~~~---~~~~~~~~~ 202 (228)
T PRK14119 149 SESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRAL---IKYL---EDVSDEDII 202 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHHH---HHHH---hCCCHHHHh
Confidence 45667777888888877543 46789999999987752 2222 356666544
No 132
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=57.72 E-value=9.4 Score=23.20 Aligned_cols=13 Identities=46% Similarity=0.879 Sum_probs=11.2
Q ss_pred eEEEEeCCCCchh
Q psy6369 57 KVLVHCKMGISRS 69 (123)
Q Consensus 57 ~vlVHC~~G~~Rs 69 (123)
+||+.|.+|++-|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 5899999999766
No 133
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=57.38 E-value=43 Score=23.60 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred CccHHHHHHHHHHHHHHHH-h---CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAK-N---QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~-~---~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
.+++.+...++..++++.. . .+++|+|-|++|.-|+.. ++ ..+++.++...
T Consensus 149 GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll---~~---~lg~~~~~~~~ 203 (230)
T PRK14117 149 AENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALV---KH---IKGLSDDEIMD 203 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHHHH---HH---HhCcCHHHHhh
Confidence 4567777888888888754 2 357899999999877522 22 23667665544
No 134
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=57.03 E-value=50 Score=21.21 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
.+.+.++.+.+.+.+++|++|++. |.|-|++++.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~ 51 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHH
Confidence 345778899999999999777765 3445555443
No 135
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=56.66 E-value=41 Score=24.67 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
..+.|.+...+|+.+++.-..|.|.|.++.++.+
T Consensus 16 ~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 16 FMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 5556666677889999999999999977665544
No 136
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=56.66 E-value=41 Score=24.67 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
..+.|.+...+|+.+++.-..|.|.|.++.++.+
T Consensus 16 ~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 16 FMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 5556666677889999999999999977665544
No 137
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=55.01 E-value=38 Score=22.34 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 35 TDLLKHWDNTYKYITSAKN--QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 35 ~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
++..+...++..++++... .+++|+|-+.+|.-|+ ++....|.+++...+
T Consensus 115 Es~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~------l~~~~~~~~~~~~~~ 166 (177)
T TIGR03162 115 ESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRA------LLAHLLGLPLEQWWS 166 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHH------HHHHHhCCCHHHHhc
Confidence 4556667777777777655 3678999887766543 222334677776654
No 138
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=54.93 E-value=37 Score=23.88 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHH
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMK 79 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~ 79 (123)
|.++++.|-+ ..|+|+| .|.||||.++=++-|+
T Consensus 28 ~~~a~~~i~~---~~gkv~V---~G~GkSG~Igkk~Aa~ 60 (202)
T COG0794 28 FVRAVELILE---CKGKVFV---TGVGKSGLIGKKFAAR 60 (202)
T ss_pred HHHHHHHHHh---cCCcEEE---EcCChhHHHHHHHHHH
Confidence 4444444443 3568887 4999999998666555
No 139
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=54.60 E-value=50 Score=23.33 Aligned_cols=52 Identities=15% Similarity=0.069 Sum_probs=33.9
Q ss_pred CCccHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 33 DKTDLLKHWDNTYKYITSAK----NQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~----~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
..++..+...++..++++.. ..+++|||-+++|.-|+.. ....+++.++...
T Consensus 135 ~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~vir~ll------~~l~~~~~~~~~~ 190 (236)
T PTZ00123 135 NTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRALV------KYLDKMSEEDILE 190 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHHHHHHH------HHHhCCCHHHHhh
Confidence 34566777778888776642 3467999999888866422 2234677776654
No 140
>PRK13936 phosphoheptose isomerase; Provisional
Probab=54.39 E-value=64 Score=22.16 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH
Q psy6369 39 KHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
+.+.++.+.+.+.+.++++|++. |.|.|+.++.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~ 59 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQ 59 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHH
Confidence 44567788888888899899887 7777766554
No 141
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=53.16 E-value=35 Score=19.49 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=17.6
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNWD 84 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~ 84 (123)
..+.+|+|+|..|. |+. .+++.+...|.+
T Consensus 54 ~~~~~iv~~c~~g~-~a~--~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSA--KAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHH--HHHHHHHHcCCC
Confidence 45689999996655 653 334444555543
No 142
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=53.12 E-value=15 Score=22.86 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=12.2
Q ss_pred CeEEEEeCCCCchh
Q psy6369 56 SKVLVHCKMGISRS 69 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs 69 (123)
.++++-|.+|.|-|
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 47999999999876
No 143
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=53.10 E-value=28 Score=28.53 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=18.8
Q ss_pred HhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 52 KNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
...+++|.++|..|. ||+.+. +.++..|.
T Consensus 220 i~~~~~VVvYC~sG~-rAa~~~--~~L~~lG~ 248 (610)
T PRK09629 220 ITPDKEVITHCQTHH-RSGFTY--LVAKALGY 248 (610)
T ss_pred CCCCCCEEEECCCCh-HHHHHH--HHHHHcCC
Confidence 345789999999996 665432 34445453
No 144
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=52.68 E-value=15 Score=18.92 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy6369 74 IAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETY 112 (123)
Q Consensus 74 ~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~ 112 (123)
-.||...-+-.+.+++..+...|| ..|-...-+.|..+
T Consensus 3 r~YL~~~v~p~L~~gL~~l~~~rP-~DPi~~La~~Ll~~ 40 (42)
T PF05186_consen 3 RQYLKETVGPVLTEGLAELAKERP-EDPIEFLAEYLLKH 40 (42)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH---SSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHCC-CChHHHHHHHHHHh
Confidence 357887777779999999999999 56666555555443
No 145
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=52.24 E-value=75 Score=23.56 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCc----hhHHHHHHHHHHHcCCC-HHHHHHHHHhhCCC----CCCCHHHHHHHHH
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGIS----RSASVVIAYAMKAYNWD-LTRAMAHVRQKRNC----IKPNANFITQLET 111 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~----Rs~~~~~ayl~~~~~~~-~~~a~~~v~~~rp~----~~~~~~~~~~L~~ 111 (123)
++..++.+.+.+..||+++.|+-.+.. +.+..+..|..--..++ ..+..+.++...-. -...+.+...|..
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 566778888889999999999988887 66666666655433344 45555555555432 2233345555655
Q ss_pred HHhhhc
Q psy6369 112 YQVGVQ 117 (123)
Q Consensus 112 ~~~~l~ 117 (123)
|-..+.
T Consensus 235 W~~~f~ 240 (283)
T COG2230 235 WRERFE 240 (283)
T ss_pred HHHHHH
Confidence 555443
No 146
>PHA02540 61 DNA primase; Provisional
Probab=51.20 E-value=46 Score=25.30 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=28.4
Q ss_pred eEEEEeCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHhhC
Q psy6369 57 KVLVHCKM-GISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 57 ~vlVHC~~-G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~r 96 (123)
....||.+ |.+.. ++.|||...++++.||++.+-+..
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 67899965 55433 567899999999999999665544
No 147
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=51.11 E-value=80 Score=21.84 Aligned_cols=54 Identities=7% Similarity=-0.087 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC-----CchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMG-----ISRSASVVIAYAMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G-----~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~ 94 (123)
......-+.+..+.|.++++-..++ .+......+..++...|+++++|++.+..
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~ 280 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATS 280 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTH
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHH
Confidence 3345566777888898999988776 44445555666677789999999987754
No 148
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=50.97 E-value=53 Score=19.77 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=17.8
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+.+++|+|..|. ||.. ++. .++..|.
T Consensus 56 ~~~~~ivv~c~~g~-~s~~-a~~-~L~~~G~ 83 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQG-AAQ-YLLQQGF 83 (108)
T ss_pred CCCCCEEEEeCCCC-CHHH-HHH-HHHHCCc
Confidence 45679999999986 6533 222 3444454
No 149
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.90 E-value=80 Score=24.53 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCchh-HHHH-HHHHHHHcCCCHHHHHHHHHh
Q psy6369 46 KYITSAKNQGSKVLVHCKMGISRS-ASVV-IAYAMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 46 ~~i~~~~~~~~~vlVHC~~G~~Rs-~~~~-~ayl~~~~~~~~~~a~~~v~~ 94 (123)
+-++..++.|=+|.+...++.+.+ ..+. ...++.+.+|+++||++-+.-
T Consensus 297 ~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~gmtp~EaL~a~T~ 347 (406)
T COG1228 297 KPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRLGMTPEEALKAATI 347 (406)
T ss_pred hhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 336777788999999999999984 2222 233455667999999987754
No 150
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=50.86 E-value=55 Score=22.32 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=31.4
Q ss_pred CccHHHHHHHHHHHHHHHHh-------CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAKN-------QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAM 89 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~-------~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~ 89 (123)
.+++.+...++..++++..+ .+++|+|-|.+|.-|+.. + ...|++++...
T Consensus 116 gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~ll---~---~~lg~~~~~~~ 172 (204)
T TIGR03848 116 GESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKSVL---A---DALGMHLDLFQ 172 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHHHH---H---HHhCCCHHHhh
Confidence 34555666777777776543 356899999999877522 2 22366666543
No 151
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=50.84 E-value=19 Score=27.18 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCC
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGI 66 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~ 66 (123)
+.++-.+.+..|..||.||.+|-
T Consensus 126 I~~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 126 IGEYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHHHcCCCCEEEEeCCCCc
Confidence 34444445557889999998875
No 152
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=50.03 E-value=32 Score=24.80 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHH------HHHHcCCCHHHHHHHHHh
Q psy6369 42 DNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAY------AMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 42 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ay------l~~~~~~~~~~a~~~v~~ 94 (123)
.-...+++-+.+.+.+|.|||.......--+.-.+ ++..+.-+++.|-++++.
T Consensus 114 ~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 114 WLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 33444555566678899999987554443333222 112234567777777775
No 153
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=50.01 E-value=36 Score=22.81 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=40.1
Q ss_pred HHHHHHHHHHH--hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHh
Q psy6369 42 DNTYKYITSAK--NQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQV 114 (123)
Q Consensus 42 ~~~~~~i~~~~--~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~ 114 (123)
..+.+++.+.. ..+.+|+|-|..|.+=.-.+++|-.+...|+...= --..+.-..++.+..++..+++
T Consensus 10 ~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF03853_consen 10 RAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKK 79 (169)
T ss_dssp HHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHh
Confidence 34667777777 67789999999998877666666665655654211 1122233555556666655553
No 154
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=49.80 E-value=1.2e+02 Score=24.83 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeC--------------CCCchhHHHHHHHHHHHcCCC-----HHHHHHHHHh
Q psy6369 41 WDNTYKYITSAKNQG-SKVLVHCK--------------MGISRSASVVIAYAMKAYNWD-----LTRAMAHVRQ 94 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~-~~vlVHC~--------------~G~~Rs~~~~~ayl~~~~~~~-----~~~a~~~v~~ 94 (123)
++..++.|.+..++| .=+-|||. .=+||.|++.+.|++....-+ +++.++.+++
T Consensus 294 ~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~ 367 (607)
T PRK09284 294 WEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAA 367 (607)
T ss_pred HHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 556667777766666 34568883 347899999999999876633 3445555554
No 155
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=49.63 E-value=28 Score=26.05 Aligned_cols=57 Identities=12% Similarity=0.285 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHh--CCCeEEEEeCCCCchhHHHHHHHHHHHcCCC-HHH----HHHHHHhhCC
Q psy6369 38 LKHWDNTYKYITSAKN--QGSKVLVHCKMGISRSASVVIAYAMKAYNWD-LTR----AMAHVRQKRN 97 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~-~~~----a~~~v~~~rp 97 (123)
.+.|.+.-+++.+..+ .+++|...|++|+ |.- -+.+||.. .|.. ..+ .++|++...+
T Consensus 153 ~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCE-Kas~~m~~-~GF~eVyhL~GGIl~Y~e~~~~ 216 (308)
T COG1054 153 IETFREFPAWVEENLDLLKDKKVVMYCTGGI-RCE-KASAWMKE-NGFKEVYHLEGGILKYLEDVGT 216 (308)
T ss_pred hhhhhhhHHHHHHHHHhccCCcEEEEcCCce-eeh-hhHHHHHH-hcchhhhcccchHHHHhhhcCc
Confidence 4557777777777655 5789999999999 763 33444443 3421 111 4566666544
No 156
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=49.30 E-value=24 Score=28.85 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.4
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH---HcCCCHHHHHHHHHh
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK---AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~---~~~~~~~~a~~~v~~ 94 (123)
-.+..|||..|. ++++..+||+ ..+++.++|++.++.
T Consensus 160 ~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 160 IDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 378999999998 5888888865 357888998876664
No 157
>PHA03338 US22 family homolog; Provisional
Probab=49.29 E-value=21 Score=26.66 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCeEE-EEeCCCCchhHHHHH-HHHHHHcCCCHHHHHHHHHhhCCC
Q psy6369 46 KYITSAKNQGSKVL-VHCKMGISRSASVVI-AYAMKAYNWDLTRAMAHVRQKRNC 98 (123)
Q Consensus 46 ~~i~~~~~~~~~vl-VHC~~G~~Rs~~~~~-ayl~~~~~~~~~~a~~~v~~~rp~ 98 (123)
+|+..-++ .+. |||.+|.+=|+.+.- .|++..++..++....++...+..
T Consensus 149 eFa~vGlR---~vypihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe 200 (344)
T PHA03338 149 DFAAIGFR---FFYPIHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGE 200 (344)
T ss_pred HHHhhcce---eEEEeccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCc
Confidence 45554433 333 799999988876664 455666778888888888776653
No 158
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=49.19 E-value=61 Score=22.02 Aligned_cols=52 Identities=6% Similarity=0.061 Sum_probs=33.9
Q ss_pred CccHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAKN--QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
.++..+...++..++++..+ .+++|+|-+.+|.-|+ +++...+.+.++...+
T Consensus 118 gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~------l~~~~~~~~~~~~~~~ 171 (199)
T PRK15004 118 GEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSL------LIARLLGMPAEAMWHF 171 (199)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHH------HHHHHhCCCHHHHhcc
Confidence 45566777778888887765 3578999988777553 2333446677665543
No 159
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=48.53 E-value=15 Score=20.65 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=12.9
Q ss_pred eEEEEeCCCCchhHHHH
Q psy6369 57 KVLVHCKMGISRSASVV 73 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~ 73 (123)
++++-|..|.+-|..+.
T Consensus 1 ~il~vc~~G~~~s~~l~ 17 (84)
T cd00133 1 KILVVCGSGIGSSSMLA 17 (84)
T ss_pred CEEEECCCcHhHHHHHH
Confidence 58899999998774433
No 160
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.45 E-value=56 Score=22.40 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHH
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 73 (123)
..+.+.++++.+.+.+.+|++|++. |.|.|+.++
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3467889999999999999888775 455555543
No 161
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=48.30 E-value=68 Score=22.91 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAKN----QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
.++..+...++..++++... .+++|+|-+.+|.-|+.. +++ .+++.++...
T Consensus 148 GES~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~vir~l~---~~l---~~l~~~~~~~ 202 (245)
T TIGR01258 148 TESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGNSLRALV---KHL---EGISDEEILE 202 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCCEEEEEcChHHHHHHH---HHH---HCcCHHHHhh
Confidence 45566777788888776542 467899999888877632 222 2566665543
No 162
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=48.29 E-value=34 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=18.0
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
++.+|+++|..|. ||..+ ++.+...|.
T Consensus 77 ~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 5789999999875 66443 344455554
No 163
>PLN02444 HMP-P synthase
Probab=48.20 E-value=1e+02 Score=25.38 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeC--------------CCCchhHHHHHHHHHHHcCCC-----HHHHHHHHHh
Q psy6369 41 WDNTYKYITSAKNQG-SKVLVHCK--------------MGISRSASVVIAYAMKAYNWD-----LTRAMAHVRQ 94 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~-~~vlVHC~--------------~G~~Rs~~~~~ayl~~~~~~~-----~~~a~~~v~~ 94 (123)
++..++.|.+..++| .=+-|||. .=+||.|++.++|++....-+ +++.++.+++
T Consensus 299 ~d~~~d~ieeQaeqGVDfmTIH~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~ 372 (642)
T PLN02444 299 WEVFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQ 372 (642)
T ss_pred HHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 566677777777766 44568983 336899999999999876533 3445555554
No 164
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=48.13 E-value=66 Score=25.01 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=36.9
Q ss_pred CcceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCC
Q psy6369 20 GIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCI 99 (123)
Q Consensus 20 ~~i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~ 99 (123)
-+++|..+|+.+++..+... +.+.++ .+-+-|+|.=+.|++.-.++.+. ..+++++++|+++|.+
T Consensus 127 ~Gi~Y~~v~L~~dg~~D~~~----i~~~~~---~~tk~v~IQRSrGYs~R~sl~i~--------~I~~~i~~vk~~~p~~ 191 (403)
T PF06838_consen 127 FGIKYREVPLTEDGTIDWEA----IKKALK---PNTKMVLIQRSRGYSWRPSLTIE--------EIKEIIKFVKEINPDV 191 (403)
T ss_dssp GT-EEEE--B-TTSSB-HHH----HHHHHH---TTEEEEEEE-S-TTSSS----HH--------HHHHHHHHHHHH-TTS
T ss_pred hCceeEEEeecCCCCcCHHH----HHHhhc---cCceEEEEecCCCCCCCCCCCHH--------HHHHHHHHHHhhCCCe
Confidence 35899999999888776442 223333 34467888888898877776554 4678999999999854
No 165
>PRK01295 phosphoglyceromutase; Provisional
Probab=47.79 E-value=65 Score=22.23 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=32.1
Q ss_pred CCccHHHHHHHHHHHHH-HHH---hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 33 DKTDLLKHWDNTYKYIT-SAK---NQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~-~~~---~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
+.+++.+...++..++. ... ..+++|+|-|.+|.-|+.. ....++++++...
T Consensus 124 ~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~~ir~l~------~~~l~~~~~~~~~ 179 (206)
T PRK01295 124 GGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALV------MVLDGLTPEQILK 179 (206)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChHHHHHHH------HHHhCCCHHHHhh
Confidence 34556676777777643 332 2467999999888766532 2334677766554
No 166
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=47.62 E-value=23 Score=20.74 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=13.3
Q ss_pred eEEEEeCCCCchhHHHH
Q psy6369 57 KVLVHCKMGISRSASVV 73 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~ 73 (123)
++++-|.+|.|-|-.+.
T Consensus 2 ~ilivC~~G~~tS~~l~ 18 (89)
T cd05566 2 KILVACGTGVATSTVVA 18 (89)
T ss_pred EEEEECCCCccHHHHHH
Confidence 79999999998764433
No 167
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=47.59 E-value=62 Score=20.52 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCchhHH
Q psy6369 40 HWDNTYKYITSAKNQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~ 71 (123)
.+.++.+.+++....+.+|+|..-.|.|++-.
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 45677788888888889999999999999953
No 168
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=46.95 E-value=20 Score=27.39 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=16.9
Q ss_pred CeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 56 SKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
.+|+|||..|. ||.. ++.+|. ..|.
T Consensus 333 ~~Ivv~C~sG~-RS~~-Aa~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSAD-FIEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCCh-hHHH-HHHHHH-HcCC
Confidence 38999999996 8854 444454 3454
No 169
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=46.73 E-value=40 Score=18.93 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=12.5
Q ss_pred hCCCeEEEEeCCCCchh
Q psy6369 53 NQGSKVLVHCKMGISRS 69 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs 69 (123)
.++.+|+++|..|. |+
T Consensus 48 ~~~~~vv~~c~~~~-~a 63 (89)
T cd00158 48 DKDKPIVVYCRSGN-RS 63 (89)
T ss_pred CCCCeEEEEeCCCc-hH
Confidence 46789999999974 44
No 170
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=46.16 E-value=59 Score=19.72 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=16.9
Q ss_pred HHHcCCCHHHHHHHHHhhCC
Q psy6369 78 MKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 78 ~~~~~~~~~~a~~~v~~~rp 97 (123)
+.+.|++++++++.++..+-
T Consensus 50 ~Lr~G~~~~~ii~~L~gi~~ 69 (95)
T PF12637_consen 50 ALRSGVPPEEIIDQLRGIRC 69 (95)
T ss_pred HHHcCCCHHHHHHHhcCCCC
Confidence 34579999999999999884
No 171
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=45.90 E-value=1.6e+02 Score=24.32 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEe-CCCCchhHHHHHHHH-HHHcCCCHHHHHHHHHhhC
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHC-KMGISRSASVVIAYA-MKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC-~~G~~Rs~~~~~ayl-~~~~~~~~~~a~~~v~~~r 96 (123)
-+.+.+-.+-|.+++++|+.++||= ..|+.+-+.-++.=. ....+++-++|-++++..+
T Consensus 517 Qd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk 577 (587)
T COG0369 517 QDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELK 577 (587)
T ss_pred HHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3557777788888999998999987 677877776665444 4455699999988888755
No 172
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=45.90 E-value=27 Score=25.65 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=17.0
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 64 MGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 64 ~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
=|.||||+-+.+-|. .|.+-+.|.+
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHH
Confidence 489999877765444 3777777644
No 173
>PRK15043 transcriptional regulator MirA; Provisional
Probab=45.81 E-value=59 Score=23.52 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=43.9
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCC------------CCCCCHHHHHHHHHHHhh
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRN------------CIKPNANFITQLETYQVG 115 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp------------~~~~~~~~~~~L~~~~~~ 115 (123)
.|+++|+-|..|-.+......|++....|+..+=-=.-+.+-+| ...+++.+.+||..|..+
T Consensus 161 ~~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~ 234 (243)
T PRK15043 161 QGKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQ 234 (243)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 46779999999999999999898888877543211111222333 456788999999998754
No 174
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=45.77 E-value=38 Score=26.83 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=18.5
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+++++++|..|. ||..+ +.+|. ..|.
T Consensus 447 ~~~~~iivyC~~G~-rS~~a-a~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQ-ALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HHHHH-HHHHH-HcCC
Confidence 45679999999997 77444 44443 3443
No 175
>PRK13463 phosphatase PhoE; Provisional
Probab=45.69 E-value=82 Score=21.53 Aligned_cols=51 Identities=4% Similarity=0.081 Sum_probs=32.7
Q ss_pred CccHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAKN--QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
.++..+...++.+++++... .+++|+|-+.+|..|+ +++++ .+.+++...+
T Consensus 120 gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~---~~~~~---~~~~~~~~~~ 172 (203)
T PRK13463 120 GENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKL---LVGHF---AGIEIENVWD 172 (203)
T ss_pred CeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHH---HHHHH---hCCCHHHHhh
Confidence 45566667777777777644 3578999988888774 22222 3666665444
No 176
>PF10652 DUF2480: Protein of unknown function (DUF2480); InterPro: IPR018914 All the members of this family are uncharacterised proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (5.3.1.9 from EC). This could not, however, be confirmed.
Probab=45.51 E-value=26 Score=23.79 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCCCCCcceEEEEEeccCCCccHH---HHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 14 IDNFFPGIFDYCNIRVYDDDKTDLL---KHWDNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 14 ~~~~~~~~i~~~~ipi~d~~~~~~~---~~~~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
.++++|.+ +...+.+.|.--..+. +.|++.++-.+=..-+|..|.+||+.-
T Consensus 19 Ledyyp~g-~r~~~Dik~~L~~GliLkEKdFR~~lk~~DWsqY~~~~Vai~CStD 72 (167)
T PF10652_consen 19 LEDYYPKG-ERVVFDIKDWLFEGLILKEKDFREFLKEHDWSQYQDKYVAIYCSTD 72 (167)
T ss_pred HHHhCCCC-cEEEEecHHHHhhhhhhhhHHHHHHHHhcCHHHhCCcEEEEEcccc
Confidence 34667776 5567777776433333 235555554444455789999999764
No 177
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=45.48 E-value=57 Score=23.40 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=33.5
Q ss_pred CccHHHHHHHHHHHHHHH----HhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSA----KNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~----~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
.+++.+...++..++++. ...+++|+|-|++|.-|+... ...+++.++...
T Consensus 150 GES~~~~~~Rv~~~l~~~~~~~~~~~~~iliVsHggvir~l~~------~~~~~~~~~~~~ 204 (249)
T PRK14120 150 TECLKDVVARFLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVK------HLDGISDEDIAG 204 (249)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHH------HHhCCCHHHhhe
Confidence 455667777888887763 235678999999998877332 223667666543
No 178
>PRK05569 flavodoxin; Provisional
Probab=45.09 E-value=56 Score=20.71 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=35.1
Q ss_pred hCCCeEEEEeCCCCc-hhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy6369 53 NQGSKVLVHCKMGIS-RSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~-Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 117 (123)
-+|+++.+-++.|.+ ..+.-.+.-++...|++.-.. ..-...|+..-+++..+|-++|.
T Consensus 81 ~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~------~~~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 81 NENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD------LAVNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred cCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee------EEEccCCCHHHHHHHHHHHHHHh
Confidence 368899999999876 222212333344455543221 11134588888888888877663
No 179
>PRK02947 hypothetical protein; Provisional
Probab=44.98 E-value=60 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHH
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 73 (123)
.+.+.++.+.+.+.+.++++|++. |.|.|..++
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA 55 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILA 55 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHH
Confidence 356788999999999999999877 566665544
No 180
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.79 E-value=24 Score=20.53 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=13.2
Q ss_pred eEEEEeCCCCchhHHHH
Q psy6369 57 KVLVHCKMGISRSASVV 73 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~ 73 (123)
+++|-|.+|.+-|..+.
T Consensus 1 kilvvC~~G~~tS~ll~ 17 (86)
T cd05563 1 KILAVCGSGLGSSLMLK 17 (86)
T ss_pred CEEEECCCCccHHHHHH
Confidence 48999999998775443
No 181
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=44.67 E-value=59 Score=22.31 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHH
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~ 71 (123)
+.+.+.++.+.+-+...+|++||++ |.|+|.+
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 4566778888888999999999886 4555544
No 182
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=44.12 E-value=17 Score=27.53 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=19.1
Q ss_pred hCCCeEEEEeCCCCchh----HHHHHHHHHHHcC
Q psy6369 53 NQGSKVLVHCKMGISRS----ASVVIAYAMKAYN 82 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs----~~~~~ayl~~~~~ 82 (123)
.+|.+||-||.+|--=+ .++...+.+...|
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~g 181 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTALGVIRSAHEEG 181 (346)
T ss_pred ccCCeEEeeecCCceeecCccchHHHHHHHHHCC
Confidence 35789999998875322 3445555555555
No 183
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=43.99 E-value=41 Score=20.22 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCchhHHH
Q psy6369 45 YKYITSAKNQGSKVLVHCKMGISRSASV 72 (123)
Q Consensus 45 ~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 72 (123)
.++++.+...+++|+|++..|..=.|++
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L 31 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRV 31 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEE
Confidence 3577777778899999999998766654
No 184
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=43.85 E-value=19 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCCchhHHHHHH
Q psy6369 46 KYITSAKNQGSKVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 46 ~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~a 75 (123)
++++-+.+.+.+|.|||.....+.--+.-.
T Consensus 115 ~ql~lA~~~~~pv~iH~r~a~~~~l~il~~ 144 (255)
T PF01026_consen 115 RQLELAKELNLPVSIHCRKAHEELLEILKE 144 (255)
T ss_dssp HHHHHHHHHTCEEEEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEEecCCcHHHHHHHHHh
Confidence 334444445667777777766655444433
No 185
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=43.79 E-value=24 Score=23.81 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=51.5
Q ss_pred EEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchh-------H--HHHHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 27 IRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRS-------A--SVVIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 27 ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs-------~--~~~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
+|+.|... .+++..+-+.+....+.|+.++|-|++=. |+ + -+... +..-+++.+++-++++..
T Consensus 42 iPL~DdDR---~pWL~~l~~~~~~~~~~~~~~vi~CSALK-r~YRD~LR~~~~~~~Fv----~L~g~~~~i~~Rm~~R~g 113 (161)
T COG3265 42 IPLNDDDR---WPWLEALGDAAASLAQKNKHVVIACSALK-RSYRDLLREANPGLRFV----YLDGDFDLILERMKARKG 113 (161)
T ss_pred CCCCcchh---hHHHHHHHHHHHHhhcCCCceEEecHHHH-HHHHHHHhccCCCeEEE----EecCCHHHHHHHHHhccc
Confidence 46665544 34666777788887778877888886532 22 0 01111 124578888888888887
Q ss_pred CCCCCHHHHHHHHHHHh
Q psy6369 98 CIKPNANFITQLETYQV 114 (123)
Q Consensus 98 ~~~~~~~~~~~L~~~~~ 114 (123)
..-|..-...|+..+|.
T Consensus 114 HFM~~~ll~SQfa~LE~ 130 (161)
T COG3265 114 HFMPASLLDSQFATLEE 130 (161)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 77777777777776664
No 186
>PRK10425 DNase TatD; Provisional
Probab=43.53 E-value=26 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 46 KYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 46 ~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
.+++-+.+.+.+|.|||.......
T Consensus 112 ~ql~lA~~~~~Pv~iH~r~a~~~~ 135 (258)
T PRK10425 112 AQLAIAAELNMPVFMHCRDAHERF 135 (258)
T ss_pred HHHHHHHHhCCCeEEEEeCchHHH
Confidence 345555556788888988766444
No 187
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=43.47 E-value=25 Score=25.84 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=10.8
Q ss_pred HHhCCCeEEEEeCC
Q psy6369 51 AKNQGSKVLVHCKM 64 (123)
Q Consensus 51 ~~~~~~~vlVHC~~ 64 (123)
.+..|..||.||.+
T Consensus 106 ~I~~g~~ILTh~~S 119 (275)
T PRK08335 106 LIDDGDVIITHSFS 119 (275)
T ss_pred HcCCCCEEEEECCc
Confidence 34467899999976
No 188
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=43.42 E-value=72 Score=25.66 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=33.8
Q ss_pred CCccHHHHHHHHHHHHHHHHhCCCeEEEEeCC-CCchhHHHHHHHHHHHcCC
Q psy6369 33 DKTDLLKHWDNTYKYITSAKNQGSKVLVHCKM-GISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~-G~~Rs~~~~~ayl~~~~~~ 83 (123)
+.+...+-+.++++.|.++++++++|+|.+.. +=|=++++++.......|.
T Consensus 32 ~~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~ 83 (539)
T TIGR00644 32 PDPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGV 83 (539)
T ss_pred CChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCC
Confidence 33444455778999999999999999987743 3344555555555555553
No 189
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=43.42 E-value=1.3e+02 Score=21.93 Aligned_cols=57 Identities=14% Similarity=0.309 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHH--HHHHHHHcCC-------CHHHHHHHHHh
Q psy6369 35 TDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVV--IAYAMKAYNW-------DLTRAMAHVRQ 94 (123)
Q Consensus 35 ~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~--~ayl~~~~~~-------~~~~a~~~v~~ 94 (123)
..+...+..++.++-+..+.|..|. .-|.||.++.+ ++.++...|+ ....+++..+.
T Consensus 71 ~g~~~~I~~ay~~l~~~~~~gd~I~---lfGFSRGA~~AR~~a~~i~~~Gll~~~~~~~~~~~~~~~~~ 136 (277)
T PF09994_consen 71 WGIEARIRDAYRFLSKNYEPGDRIY---LFGFSRGAYTARAFANMIDKIGLLKPDNEERVPQAYKAYQR 136 (277)
T ss_pred cchHHHHHHHHHHHHhccCCcceEE---EEecCccHHHHHHHHHHHhhcCCcCcchhHHHHHHHHHHHh
Confidence 3456678888999877777777766 67999997776 4666666665 23455665555
No 190
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=43.33 E-value=35 Score=26.49 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=27.8
Q ss_pred EEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 59 LVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 59 lVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
..||.+ -|.+|- ++-++|...++++.+|++++...-.
T Consensus 55 ~~~Cf~-Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~g 91 (415)
T TIGR01391 55 FYHCFG-CGAGGD-AIKFLMEIEGISFVEAVEELAKRAG 91 (415)
T ss_pred cEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 588874 334454 4678899999999999999988643
No 191
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=43.16 E-value=1.8e+02 Score=23.52 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEe-CCCCchhHHHHHHHHH
Q psy6369 41 WDNTYKYITSAKNQG-SKVLVHC-KMGISRSASVVIAYAM 78 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~-~~vlVHC-~~G~~Rs~~~~~ayl~ 78 (123)
.+.+...++.+.++| ++|++|| ..|..-++.-++.|+-
T Consensus 126 ~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~s~~~~le 165 (509)
T COG0696 126 IDHLLALIELAAKNGMKKVYLHAFLDGRDTAPRSALQYLE 165 (509)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCCCCCCchhHHHHHH
Confidence 345556666666777 6999999 4588888888777763
No 192
>PRK06835 DNA replication protein DnaC; Validated
Probab=42.88 E-value=1.4e+02 Score=22.42 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH-HHHHHHcC-----CCHHHHHHHHHhhC
Q psy6369 40 HWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI-AYAMKAYN-----WDLTRAMAHVRQKR 96 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~-ayl~~~~~-----~~~~~a~~~v~~~r 96 (123)
.+..+.+|++.....+..++++=..|.|.|-.+.+ |.-+...| ++..+.+..++..+
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~ 230 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIR 230 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHH
Confidence 34445557777666678999999999999954432 22222233 55666666665543
No 193
>KOG0870|consensus
Probab=42.84 E-value=28 Score=23.68 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCC--CCchhHHHHHHHHHH----------HcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy6369 44 TYKYITSAKNQGSKVLVHCKM--GISRSASVVIAYAMK----------AYNWDLTRAMAHVRQKRNCIKPNANFITQLET 111 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~--G~~Rs~~~~~ayl~~----------~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~ 111 (123)
+.+.+++.+..+ +++||=-+ .+.|++++.+.||-. +.-+++.+.++-+...-. ..........|..
T Consensus 16 I~rlvke~l~E~-~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eief-s~f~~plk~~Le~ 93 (172)
T KOG0870|consen 16 ITRLVKEVLPES-NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEF-SSFVNPLKSALEA 93 (172)
T ss_pred HHHHHHHhCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhch-HHHhhHHHHHHHH
Confidence 445666666655 78888643 788999999988843 234889999888888764 3334455566777
Q ss_pred HHhhhcc
Q psy6369 112 YQVGVQP 118 (123)
Q Consensus 112 ~~~~l~~ 118 (123)
|....+.
T Consensus 94 yk~~~k~ 100 (172)
T KOG0870|consen 94 YKKAVKQ 100 (172)
T ss_pred HHHHHHH
Confidence 7765543
No 194
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=42.41 E-value=76 Score=22.67 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=29.8
Q ss_pred ceEEEEEeccCCCccH---HHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q psy6369 22 FDYCNIRVYDDDKTDL---LKHWDNTYKYITSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 22 i~~~~ipi~d~~~~~~---~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 67 (123)
+....+|...++.... ...-.+.++.++....+|+.|..|=..-..
T Consensus 32 f~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 32 FSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHGYTHQY 80 (243)
T ss_pred EEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEecceec
Confidence 4566777654444332 222445777888888899999999755444
No 195
>PF14746 WASH-7_C: WASH complex subunit 7, C-terminal
Probab=42.17 E-value=48 Score=22.66 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcC-CCHHHHHHHHHhhC
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYN-WDLTRAMAHVRQKR 96 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~-~~~~~a~~~v~~~r 96 (123)
++..+.-=++..++++.=.+.|..|. ++.+||+..-.+ ++.-+++.+.++.+
T Consensus 60 ve~~i~~Kekl~Kk~k~~~~ftDDGF----a~GvAyiLklLdQ~~~FdsLhWF~Sv~ 112 (170)
T PF14746_consen 60 VEYMIQCKEKLFKKNKEGASFTDDGF----AMGVAYILKLLDQYDEFDSLHWFESVK 112 (170)
T ss_pred HHHHHHhHHHHHhcCCCCCeeecccH----HHHHHHHHHHhcchhhhhhcccHHHHH
Confidence 33333333334445555667799999 888889887554 66666666665543
No 196
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=41.98 E-value=26 Score=21.36 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=14.5
Q ss_pred CeEEEEeCCCCchhHHHH
Q psy6369 56 SKVLVHCKMGISRSASVV 73 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~ 73 (123)
.+||+-|.+|+|-|-.+.
T Consensus 2 ~KIL~aCG~GvgSS~~ik 19 (93)
T COG3414 2 IKILAACGNGVGSSTMIK 19 (93)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 489999999999885544
No 197
>PF14420 Clr5: Clr5 domain
Probab=41.69 E-value=58 Score=17.51 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=24.0
Q ss_pred HcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy6369 80 AYNWDLTRAMAHVRQKRNCIKPNANFITQLETY 112 (123)
Q Consensus 80 ~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~ 112 (123)
..++++++..++++.......-...+..+|..|
T Consensus 18 ~e~~tl~~v~~~M~~~~~F~at~rqy~~r~~~W 50 (54)
T PF14420_consen 18 DENKTLEEVMEIMKEEHGFKATKRQYKRRFKKW 50 (54)
T ss_pred hCCCcHHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 568999999999999887444445555566554
No 198
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=41.59 E-value=59 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=27.8
Q ss_pred CccHHHHHHHHHHHHHHHHhCCC--eEEEEeCCCCch
Q psy6369 34 KTDLLKHWDNTYKYITSAKNQGS--KVLVHCKMGISR 68 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~~~~--~vlVHC~~G~~R 68 (123)
..+..+...++..++.+...... +|+|-|++|.-|
T Consensus 122 gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir 158 (208)
T COG0406 122 GESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIR 158 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHH
Confidence 45677777888888888877543 599999999888
No 199
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=41.37 E-value=47 Score=24.69 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=17.6
Q ss_pred HhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 52 KNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+.++.+|.++|..|. ||+. + ++.++..|.
T Consensus 266 i~~~~~iv~yC~sG~-~A~~-~-~~~L~~~G~ 294 (320)
T PLN02723 266 ISLDSPIVASCGTGV-TACI-L-ALGLHRLGK 294 (320)
T ss_pred CCCCCCEEEECCcHH-HHHH-H-HHHHHHcCC
Confidence 345689999998876 5433 2 223344554
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=41.08 E-value=39 Score=24.09 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCCCchhHHHHH--HHHHHHcCCCHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVVI--AYAMKAYNWDLTR 87 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~--ayl~~~~~~~~~~ 87 (123)
..++++|--.+|-|-|.+++. +|++...+.++++
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~ 47 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPER 47 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGG
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHH
Confidence 467999999999999988874 7788776555544
No 201
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=41.06 E-value=95 Score=19.82 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.9
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
+|+.+++....|.|.|-+...+.+
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEECCCCCccHHHHHHHHH
Confidence 578999999999999977776544
No 202
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=40.95 E-value=1.4e+02 Score=22.04 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHH---HHHHHHHcCCCHHH
Q psy6369 39 KHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVV---IAYAMKAYNWDLTR 87 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~---~ayl~~~~~~~~~~ 87 (123)
+.+.++++.+.+.+++||+|++- |.|-|+.++ ++-+...+|.+++.
T Consensus 41 ~~I~~av~~~~~~l~~gGrl~~~---G~G~Sg~l~~~DA~e~~~t~g~~~~~ 89 (291)
T TIGR00274 41 PDIAAAVEQIVQAFQQGGRLIYI---GAGTSGRLGVLDASECPPTFGVSPEL 89 (291)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE---CCcHHHHHHHHHHHHhhhhcCCCHHH
Confidence 34666777777777888777654 444555543 23344455655543
No 203
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=40.85 E-value=63 Score=23.26 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=34.0
Q ss_pred ceEEEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 22 FDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 22 i~~~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
...+.+|+..+....+.++|+++.+.|...+..|+.|-+-|-+
T Consensus 57 ~~~l~fPm~~~~~e~~~~~~~e~a~~va~~l~~G~~VAf~~lG 99 (234)
T COG2243 57 IVELHFPMTTDMREELEDAWEEAAAEVAAELEAGRDVAFLTLG 99 (234)
T ss_pred eeEEEeccCCchHHHHHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 4667778765535567788999999999999999888888843
No 204
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=40.36 E-value=56 Score=23.58 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH---HHHHHHcCCCH
Q psy6369 39 KHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI---AYAMKAYNWDL 85 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~---ayl~~~~~~~~ 85 (123)
+.+.++++.+.+.+++|++|++ | |.|-|+.++. ..+.-.+|.++
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~-~--GaGtSg~la~~da~e~~~tfg~~~ 79 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIY-V--GAGTSGRLGVLDASELPPTFGTPP 79 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEE-E--cCcHHHHHHHHHHHhccccccCCc
Confidence 4466777888888888887554 3 4555666554 34444555533
No 205
>KOG1158|consensus
Probab=40.02 E-value=2.2e+02 Score=23.84 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEeCCC-CchhHHHHHHHHH-HHcCCCHHHHHHHHHhhCC
Q psy6369 41 WDNTYKYITSAKN-QGSKVLVHCKMG-ISRSASVVIAYAM-KAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 41 ~~~~~~~i~~~~~-~~~~vlVHC~~G-~~Rs~~~~~ayl~-~~~~~~~~~a~~~v~~~rp 97 (123)
+.+-.+-|-+.+. +|+.++|+=.++ +-|...=++.-++ ...+++-++|.++++.-|-
T Consensus 577 l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~ 636 (645)
T KOG1158|consen 577 LREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKK 636 (645)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhh
Confidence 4445555556654 488999988887 8888766664444 4556999999999998764
No 206
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=40.00 E-value=72 Score=23.60 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCH
Q psy6369 39 KHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDL 85 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~ 85 (123)
+.+.++++.+.+.+++|++|++.=.++-+|-+..-+.-+.-.++++.
T Consensus 42 ~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~ 88 (296)
T PRK12570 42 PQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSP 88 (296)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCc
Confidence 44666777777788888886554222333332333333333444443
No 207
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=39.77 E-value=38 Score=25.23 Aligned_cols=15 Identities=40% Similarity=0.835 Sum_probs=11.4
Q ss_pred HhCCCeEEEEeCCCC
Q psy6369 52 KNQGSKVLVHCKMGI 66 (123)
Q Consensus 52 ~~~~~~vlVHC~~G~ 66 (123)
..+|..||.||.+|.
T Consensus 116 I~~g~~ILT~~~Sg~ 130 (303)
T TIGR00524 116 IKDGDTVLTHCNAGA 130 (303)
T ss_pred ccCCCEEEEecCCcc
Confidence 336788999998854
No 208
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=39.63 E-value=75 Score=22.71 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=31.9
Q ss_pred CccHHHHHHHHHHHHHHHH----hCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHH
Q psy6369 34 KTDLLKHWDNTYKYITSAK----NQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAM 89 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~----~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~ 89 (123)
.++..+...++.+++++.. ..|++|+|-|++|.-|+.. ++ ..+++.++..
T Consensus 148 GES~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVtHggvir~l~---~~---ll~~~~~~~~ 201 (247)
T PRK14115 148 TESLKDTIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRALV---KY---LDNISDEEIL 201 (247)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeChHHHHHHH---HH---HhCCCHHHhh
Confidence 4556666777877777643 2467899999888876622 22 2356666543
No 209
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=39.62 E-value=68 Score=17.70 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhC
Q psy6369 72 VVIAYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 72 ~~~ayl~~~~~~~~~~a~~~v~~~r 96 (123)
.++--+..+.++|..+|++.+++..
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~~~ 30 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKRSG 30 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcC
Confidence 3455567788999999999999754
No 210
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.46 E-value=76 Score=23.91 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.0
Q ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6369 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 63 ~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~ 94 (123)
..|.+|. +.=++.+++...+|-++|++.++.
T Consensus 284 KfG~~~~-~~~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 284 KFGFGRA-TDHASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hcCCCcC-chHHHHHHHcCCCCHHHHHHHHHH
Confidence 5688887 444556788878999999999999
No 211
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.23 E-value=88 Score=23.82 Aligned_cols=28 Identities=21% Similarity=0.536 Sum_probs=18.5
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
.++.+|+++|..|. ||.. + +..+...|.
T Consensus 55 ~~~~~IvvyC~~G~-rs~~-a-a~~L~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH-A-AATLRELGY 82 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH-H-HHHHHHcCC
Confidence 46789999999885 7654 2 334445554
No 212
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=39.02 E-value=1.4e+02 Score=21.02 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcC--CCHHH-------HHHHHHhhCCC----CCCCHHHHH
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYN--WDLTR-------AMAHVRQKRNC----IKPNANFIT 107 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~--~~~~~-------a~~~v~~~rp~----~~~~~~~~~ 107 (123)
+..+.+++....++|.++.+.... -+||..-.+..|....| .+.++ +..++++..|. +.-..++.+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~-~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~~ 94 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNN-SSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELRE 94 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECC-CCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 335788999888888888777544 45787888887877555 33333 66777765442 223455666
Q ss_pred HHHH
Q psy6369 108 QLET 111 (123)
Q Consensus 108 ~L~~ 111 (123)
.|+.
T Consensus 95 ~l~~ 98 (236)
T TIGR01460 95 SLEG 98 (236)
T ss_pred HHHH
Confidence 6655
No 213
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=38.89 E-value=42 Score=19.49 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=13.2
Q ss_pred hCCCeEEEEeCCCCchhHH
Q psy6369 53 NQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~ 71 (123)
..+.+|+++|..|. |+..
T Consensus 49 ~~~~~vvl~c~~g~-~a~~ 66 (90)
T cd01524 49 PKDKEIIVYCAVGL-RGYI 66 (90)
T ss_pred CCCCcEEEEcCCCh-hHHH
Confidence 55679999999874 5533
No 214
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=38.67 E-value=94 Score=22.48 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHHHcCCCHHHHHHHHHhh
Q psy6369 75 AYAMKAYNWDLTRAMAHVRQK 95 (123)
Q Consensus 75 ayl~~~~~~~~~~a~~~v~~~ 95 (123)
..+|...|++.++|++.++..
T Consensus 233 ~vl~~~~g~s~~eA~~~~~~~ 253 (303)
T cd00687 233 KVLAEEHGLSLEEAISVVRDM 253 (303)
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 347888899999999998775
No 215
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=38.21 E-value=37 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.9
Q ss_pred EEEEe-CCCCchhHHHHHHHHHHHcCCC
Q psy6369 58 VLVHC-KMGISRSASVVIAYAMKAYNWD 84 (123)
Q Consensus 58 vlVHC-~~G~~Rs~~~~~ayl~~~~~~~ 84 (123)
+.||. ..|.||++-+.+-+++.+.|.+
T Consensus 120 ~~IHPF~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 120 VAIHPFPNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred heecCcCCCCcHHHHHHHHHHHHHCCCC
Confidence 67888 6799999999998888888864
No 216
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=38.05 E-value=1e+02 Score=23.13 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCc-hhHHHHHHHHHHHcC----CCHHHHHHHHHhhCCCCCCCHHHHHHH
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGIS-RSASVVIAYAMKAYN----WDLTRAMAHVRQKRNCIKPNANFITQL 109 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~~-Rs~~~~~ayl~~~~~----~~~~~a~~~v~~~rp~~~~~~~~~~~L 109 (123)
+..++-. ..|-+|+.|...|.+ ++++ +=++...| .+++++.+.+.+......+.+.|-..+
T Consensus 90 ~~a~vlA--~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~ 155 (330)
T TIGR01245 90 ASAFVAA--AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAM 155 (330)
T ss_pred HHHHHHH--hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHH
Confidence 4444443 468999999998887 7665 23445445 678899999988765444444444443
No 217
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=38.05 E-value=71 Score=17.49 Aligned_cols=48 Identities=6% Similarity=0.195 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy6369 66 ISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 66 ~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 117 (123)
.+.+++.+.- +...+.|.++.++.+.+..+ +.+.. -...+..|-..|.
T Consensus 15 Ln~~a~~Iw~--~~~g~~t~~ei~~~l~~~y~-~~~~~-~~~dv~~fl~~L~ 62 (68)
T PF05402_consen 15 LNETAAFIWE--LLDGPRTVEEIVDALAEEYD-VDPEE-AEEDVEEFLEQLR 62 (68)
T ss_dssp --THHHHHHH--H--SSS-HHHHHHHHHHHTT---HHH-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHH--HccCCCCHHHHHHHHHHHcC-CCHHH-HHHHHHHHHHHHH
Confidence 3444444433 33456788888888888763 33332 2444444444443
No 218
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.44 E-value=2.3e+02 Score=23.63 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHc--C------------CCHHHHHHHHHhh
Q psy6369 43 NTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAY--N------------WDLTRAMAHVRQK 95 (123)
Q Consensus 43 ~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~--~------------~~~~~a~~~v~~~ 95 (123)
+..+.+.++++.|+..++....|.|.|.++..+.|.+.. + -.+.++++.++..
T Consensus 17 ~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 17 SYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred HHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 455667777778999999999999999777766564422 1 1255677777763
No 219
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=37.27 E-value=1.5e+02 Score=21.01 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 40 HWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+-+.+.+.+.....+..+--|-+|--++-++.+.|-+.-+|.
T Consensus 102 aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~gr 145 (209)
T TIGR02584 102 AANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFGR 145 (209)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhCC
Confidence 34555566666654555666667777667766666666665554
No 220
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=37.24 E-value=2e+02 Score=22.51 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEe----------------CCCCchhHHHHHHHHHHHcCC-----CHHHHHHHHHh----
Q psy6369 41 WDNTYKYITSAKNQG-SKVLVHC----------------KMGISRSASVVIAYAMKAYNW-----DLTRAMAHVRQ---- 94 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~-~~vlVHC----------------~~G~~Rs~~~~~ayl~~~~~~-----~~~~a~~~v~~---- 94 (123)
++..++.+.+..++| .=+-||| ..=+||.|++.++|++....- ++++.++.++.
T Consensus 140 ~d~~~~~v~~qa~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvt 219 (432)
T COG0422 140 EDDFFDTVEKQAEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVT 219 (432)
T ss_pred HHHHHHHHHHHHHhCCcEEEeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCee
Confidence 445566666666666 3345787 123689999999999987653 34455555554
Q ss_pred ------hCCCCCCCHHHHHH
Q psy6369 95 ------KRNCIKPNANFITQ 108 (123)
Q Consensus 95 ------~rp~~~~~~~~~~~ 108 (123)
.||+.....+=..|
T Consensus 220 lSLGDglRPG~i~DA~D~aQ 239 (432)
T COG0422 220 LSLGDGLRPGCIADANDEAQ 239 (432)
T ss_pred eeccCCCCCCcccCCccHHH
Confidence 57765444433333
No 221
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=37.01 E-value=91 Score=26.64 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=33.7
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHhhCC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK----AYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~----~~~~~~~~a~~~v~~~rp 97 (123)
+.++.||...|. +++++.-||+ ..|++.++|++.+++.-.
T Consensus 296 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~~ 339 (794)
T TIGR02093 296 PKKVAIQLNDTH---PALAIPELMRLLIDEEGMDWDEAWDITTKTFA 339 (794)
T ss_pred CcceEEEecCCc---hHHHHHHHHHHHHHhcCCCHHHHHHHHHhhee
Confidence 579999999999 6888887776 458999999999998653
No 222
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=36.86 E-value=1.2e+02 Score=21.04 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHH-HHHHHH
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGISRSASVV-IAYAMK 79 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~-~ayl~~ 79 (123)
+.+++.+...++.+|+|-|..|.|=.=.++ +.+|..
T Consensus 34 va~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~ 70 (205)
T TIGR00197 34 VAQAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKG 70 (205)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHh
Confidence 445555444456799999999887774444 444443
No 223
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=36.57 E-value=1.9e+02 Score=22.28 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHH--HHHHHHHcC-------CCHHHHHHHHHhhCCCCCCCHH
Q psy6369 36 DLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVV--IAYAMKAYN-------WDLTRAMAHVRQKRNCIKPNAN 104 (123)
Q Consensus 36 ~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~--~ayl~~~~~-------~~~~~a~~~v~~~rp~~~~~~~ 104 (123)
.+.+.+..++.|+-...+.|..|+.. |.+|.+..+ +|-|+++-| --.++|++..++.-+..+|+..
T Consensus 102 gL~~nI~~AYrFL~~~yepGD~Iy~F---GFSRGAf~aRVlagmir~vGlls~~~~~~~d~Aw~~y~~r~~~~dp~~~ 176 (423)
T COG3673 102 GLVQNIREAYRFLIFNYEPGDEIYAF---GFSRGAFSARVLAGMIRHVGLLSRKHAARIDEAWAHYRQRLSGLDPEGQ 176 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEe---eccchhHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhcCCCChhhh
Confidence 34567888999999999999999864 889985444 343444333 2367899999998888888764
No 224
>PRK00919 GMP synthase subunit B; Validated
Probab=35.78 E-value=1.4e+02 Score=22.37 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
+..++++.++.|++.... ++|+|=.++|+.=|
T Consensus 4 ~~~~~~~~~~~l~~~~~~-~kVlVa~SGGVDSs 35 (307)
T PRK00919 4 PEKFIEEAIEEIREEIGD-GKAIIALSGGVDSS 35 (307)
T ss_pred HHHHHHHHHHHHHHHhCC-CCEEEEecCCHHHH
Confidence 455677888888888776 69999999999733
No 225
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=35.72 E-value=55 Score=23.54 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q psy6369 39 KHWDNTYKYITSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 67 (123)
+.++++++++++... ..-+|.||..++-
T Consensus 126 ~EI~~Av~~~~~~~~-~~l~llHC~s~YP 153 (241)
T PF03102_consen 126 EEIERAVEVLREAGN-EDLVLLHCVSSYP 153 (241)
T ss_dssp HHHHHHHHHHHHHCT---EEEEEE-SSSS
T ss_pred HHHHHHHHHHHhcCC-CCEEEEecCCCCC
Confidence 457788888855543 4589999998863
No 226
>PF08974 DUF1877: Domain of unknown function (DUF1877); InterPro: IPR015068 This entry represents a family of hypothetical proteins.; PDB: 1RYL_B.
Probab=35.52 E-value=84 Score=21.02 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=22.3
Q ss_pred CccHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy6369 34 KTDLLKHWDNTYKYITSAKNQGSKVLVH 61 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~~~~~vlVH 61 (123)
...+..+|..+.+|.+++.++|..|++.
T Consensus 139 ~~~l~~~f~~L~~Fy~~AA~~~~~Vl~~ 166 (167)
T PF08974_consen 139 FEYLWDYFEELKEFYQKAAENGDAVLFY 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 3445577999999999999999999874
No 227
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=35.27 E-value=69 Score=21.16 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=18.8
Q ss_pred eCCCCchhHHHHHHHHHH--HcCCCHHHHHHHHHh
Q psy6369 62 CKMGISRSASVVIAYAMK--AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 62 C~~G~~Rs~~~~~ayl~~--~~~~~~~~a~~~v~~ 94 (123)
|..|.+.. .+..+|-. +.+++.++|++.++.
T Consensus 129 ~a~G~g~~--~~~~~L~~~~~~~~s~~ea~~l~~~ 161 (182)
T cd01906 129 TAIGSGSQ--YALGILEKLYKPDMTLEEAIELALK 161 (182)
T ss_pred EEECCCcH--HHHHHHHHHccCCCCHHHHHHHHHH
Confidence 34455544 44444433 446889999888776
No 228
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=35.08 E-value=53 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.0
Q ss_pred HHHhCCCeEEEEeCCCCchhH
Q psy6369 50 SAKNQGSKVLVHCKMGISRSA 70 (123)
Q Consensus 50 ~~~~~~~~vlVHC~~G~~Rs~ 70 (123)
+.+++.++++|.+.+|+|.++
T Consensus 14 ~~i~~~~~ivvlTGAGiS~~S 34 (285)
T PRK05333 14 DFVERHPRLFVLTGAGISTDS 34 (285)
T ss_pred HHHHhCCcEEEEeCCcccccc
Confidence 334446799999999999774
No 229
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=34.23 E-value=60 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
+.+++++|+++...|-+|+|.+++-
T Consensus 105 ypDav~~ik~wk~~g~~vyiYSSGS 129 (229)
T COG4229 105 YPDAVQAIKRWKALGMRVYIYSSGS 129 (229)
T ss_pred CHhHHHHHHHHHHcCCcEEEEcCCC
Confidence 5789999999999999999998653
No 230
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.97 E-value=1.1e+02 Score=18.56 Aligned_cols=39 Identities=5% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhh
Q psy6369 78 MKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGV 116 (123)
Q Consensus 78 ~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l 116 (123)
.+..|+++.++.+++........+.......|.+....+
T Consensus 54 lr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (99)
T cd04765 54 LYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAEL 92 (99)
T ss_pred HHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 356799999999999998888888888888887665543
No 231
>PRK10812 putative DNAse; Provisional
Probab=33.79 E-value=47 Score=24.05 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=17.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCchhHH
Q psy6369 47 YITSAKNQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 47 ~i~~~~~~~~~vlVHC~~G~~Rs~~ 71 (123)
+++-+.+.+.+|.|||..+....-.
T Consensus 116 ql~lA~e~~~Pv~iH~r~a~~~~l~ 140 (265)
T PRK10812 116 HIQIGRELNKPVIVHTRDARADTLA 140 (265)
T ss_pred HHHHHHHhCCCeEEEeeCchHHHHH
Confidence 3444555678999999888864433
No 232
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=33.57 E-value=71 Score=16.14 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHh
Q psy6369 71 SVVIAYAMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 71 ~~~~ayl~~~~~~~~~~a~~~v~~ 94 (123)
..+..|| ...+|+++.|+...=.
T Consensus 16 ~~A~~~L-~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 16 DVAIQYL-EANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHH-HHTTT-HHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHh
Confidence 4444444 4457888888776543
No 233
>KOG0177|consensus
Probab=33.57 E-value=78 Score=22.12 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=24.9
Q ss_pred CCCCchhHHHHHHHHHHHcC--CCHHHHHHHHHhh
Q psy6369 63 KMGISRSASVVIAYAMKAYN--WDLTRAMAHVRQK 95 (123)
Q Consensus 63 ~~G~~Rs~~~~~ayl~~~~~--~~~~~a~~~v~~~ 95 (123)
.+|.|-++-++.+.|-+.+. ++-++|+..++.+
T Consensus 129 y~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKC 163 (200)
T KOG0177|consen 129 YAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKC 163 (200)
T ss_pred cccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHH
Confidence 34555567888887776554 9999999999874
No 234
>PRK10126 tyrosine phosphatase; Provisional
Probab=33.52 E-value=45 Score=21.72 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.9
Q ss_pred CeEEEEeCCCCchhHHHHH
Q psy6369 56 SKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ 74 (123)
.+||+-|.+..+||+..-+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa 21 (147)
T PRK10126 3 NNILVVCVGNICRSPTAER 21 (147)
T ss_pred CeEEEEcCCcHhHHHHHHH
Confidence 4899999999999976543
No 235
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=33.11 E-value=1.3e+02 Score=19.61 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=15.0
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAM 78 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~ 78 (123)
.+.+|+|+|..|. +| ..++..|.
T Consensus 48 ~~~~vVv~c~~g~-~a-~~aa~~L~ 70 (145)
T cd01535 48 AAERYVLTCGSSL-LA-RFAAADLA 70 (145)
T ss_pred CCCCEEEEeCCCh-HH-HHHHHHHH
Confidence 4579999999863 44 44444443
No 236
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=33.07 E-value=1.2e+02 Score=21.06 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.8
Q ss_pred hCCCeEEEEeCCCCchhHHHH
Q psy6369 53 NQGSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~ 73 (123)
...+.|.|+|..|.|-|.+.+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~ 40 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAF 40 (191)
T ss_pred ccCCeEEEECCCCCChHHHHH
Confidence 356799999999999995443
No 237
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=33.07 E-value=83 Score=16.78 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=21.2
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhC
Q psy6369 64 MGISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 64 ~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~r 96 (123)
.|.+|... .++.=+...|.+++.--..++..|
T Consensus 17 tgLd~etL-~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 17 TGLDRETL-SICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCCHHHH-HHHHHHHHCCCCHHHHHHHHHHhC
Confidence 37888844 444444557999997666666654
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=32.85 E-value=1.3e+02 Score=19.23 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy6369 85 LTRAMAHVRQKRNCIKPNANFITQLETYQVGVQP 118 (123)
Q Consensus 85 ~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 118 (123)
.-+.+.++.++.| +.....|...|.+|.-.+..
T Consensus 71 al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 71 ALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcC
Confidence 3344566677778 88889999999998765544
No 239
>KOG1905|consensus
Probab=32.32 E-value=66 Score=24.27 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHH
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~ 71 (123)
.+.+..-++-+.++.++++.+.||=.+|++-++.
T Consensus 38 ~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~ 71 (353)
T KOG1905|consen 38 PEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAG 71 (353)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEeCCccccccC
Confidence 4445667777777888899999999999987644
No 240
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.25 E-value=2e+02 Score=20.85 Aligned_cols=71 Identities=8% Similarity=-0.011 Sum_probs=42.9
Q ss_pred EEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHH---------------cCCCHHHHH
Q psy6369 25 CNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKA---------------YNWDLTRAM 89 (123)
Q Consensus 25 ~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~---------------~~~~~~~a~ 89 (123)
..+-+.|+...-..+.+.+.+..+++....+-++-+||+.-.|=+.+-+++-+-.- .+.+.++.+
T Consensus 153 ~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v 232 (266)
T cd07944 153 DVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLL 232 (266)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHH
Confidence 34566777544445556667777766554446899999887766655444433210 125667777
Q ss_pred HHHHhh
Q psy6369 90 AHVRQK 95 (123)
Q Consensus 90 ~~v~~~ 95 (123)
.+++..
T Consensus 233 ~~l~~~ 238 (266)
T cd07944 233 DYLNNK 238 (266)
T ss_pred HHHHHh
Confidence 777765
No 241
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=32.23 E-value=1.7e+02 Score=24.21 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHH
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 73 (123)
-.+...++.+.|.+.+++||+|||=|.+ +||+--++
T Consensus 384 r~~~e~~l~~~I~~tl~~gG~VLIP~fa-vGR~QEll 419 (630)
T TIGR03675 384 REEAEKELIKVVNETIKRGGKVLIPVFA-VGRAQEVM 419 (630)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEech-hHHHHHHH
Confidence 3455677888999999999999999988 88885544
No 242
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=32.10 E-value=40 Score=21.70 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=8.4
Q ss_pred CCeEEEEeCCCCchh
Q psy6369 55 GSKVLVHCKMGISRS 69 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs 69 (123)
.++++|||+...+-.
T Consensus 96 ~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 96 PGQIVVHTSGALGSD 110 (127)
T ss_dssp TT-EEEES-SS--GG
T ss_pred CCcEEEECCCCChHH
Confidence 369999998877644
No 243
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.02 E-value=1.3e+02 Score=25.77 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=33.9
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHhhCC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK----AYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~----~~~~~~~~a~~~v~~~rp 97 (123)
+.++.+|-..|. +++++.-||+ ..|++.++|++.+++.--
T Consensus 299 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~w~~Aw~i~~~~~~ 342 (797)
T cd04300 299 PDKVAIQLNDTH---PALAIPELMRILVDEEGLDWDEAWDITTKTFA 342 (797)
T ss_pred CCceEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHhhee
Confidence 479999999999 6888888886 468999999999998653
No 244
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=31.96 E-value=1.2e+02 Score=25.98 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHhhC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK----AYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~----~~~~~~~~a~~~v~~~r 96 (123)
+.++.+|...|. +++++.-||+ ..|++.++|++.+++.-
T Consensus 301 ~~~~~ihlNDtH---palai~ElmR~L~d~~gl~wd~Aw~iv~~~~ 343 (798)
T PRK14985 301 PDYEVIQLNDTH---PTIAIPELLRVLLDEHQLSWDDAWAITSKTF 343 (798)
T ss_pred CCCcEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhe
Confidence 478899999998 6888877775 35899999999999865
No 245
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=31.85 E-value=22 Score=27.36 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcC----CCHHHHHHH
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYN----WDLTRAMAH 91 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~----~~~~~a~~~ 91 (123)
|.-.++...+-.-+|++|.| +..+-+|+..+++.|-.+.+| |+..+|.+.
T Consensus 57 FyasvE~~~~p~L~~kPv~V-~~~~~~~~~V~a~sy~AR~~GV~~gM~~~~A~~l 110 (404)
T cd01701 57 FFVSVSIRNRPDLKGKPVAV-CHGKGPNSEIASCNYEARSYGIKNGMWVGQAKKL 110 (404)
T ss_pred HHHHHHhhhCccccCCCEEE-ecCCCCCeEEEecCHHHHhcCCCCCCcHHHHHHH
Confidence 33455555555556888888 444434676777889999877 666666554
No 246
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=31.73 E-value=56 Score=21.31 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=15.7
Q ss_pred CeEEEEeCCCCchhHHHHH
Q psy6369 56 SKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ 74 (123)
.+||+-|.+-.+||+..-+
T Consensus 3 ~~ILfVC~gN~cRSpmAEa 21 (144)
T PRK11391 3 NSILVVCTGNICRSPIGER 21 (144)
T ss_pred CeEEEEcCCcHhHHHHHHH
Confidence 4899999999999976444
No 247
>PF05880 Fiji_64_capsid: Fijivirus 64 kDa capsid protein; InterPro: IPR008618 This family consists of several Fijivirus 64 kDa capsid proteins.
Probab=31.56 E-value=1e+02 Score=24.83 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCC----CCchhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHCKM----GISRSASVVIAYAMKAYNWDLTRAMAHVRQK 95 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC~~----G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~ 95 (123)
.+..+.+.+.+.....+|+...|-|.. |+.-+ ...+.-+|.+++.++++.+.++..-
T Consensus 410 l~~YR~I~dvLnkIWkRgKd~av~~~DyIKlGvekA-~hls~iLmKKYnit~ddi~~FI~~G 470 (561)
T PF05880_consen 410 LDQYRKISDVLNKIWKRGKDFAVKYFDYIKLGVEKA-SHLSPILMKKYNITLDDIINFIEEG 470 (561)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCcHHHHHHhHHHH-hhhhHHHHHHhCCCHHHHHHHHHhC
Confidence 566788888888888899999999954 88555 7777789999999999999999763
No 248
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=31.32 E-value=1.4e+02 Score=18.87 Aligned_cols=38 Identities=5% Similarity=0.019 Sum_probs=30.4
Q ss_pred HHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhc
Q psy6369 79 KAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 79 ~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~ 117 (123)
...|++.++.+++++..-.. ....+....|.+|.++..
T Consensus 51 ~~~G~~~e~i~~~L~~~S~~-~lP~~v~~~i~~w~~~~g 88 (129)
T PF13625_consen 51 ASAGLTAEEIIEFLERYSKN-PLPQNVEQSIEDWARRYG 88 (129)
T ss_pred HHcCCCHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Confidence 45799999999999998753 456778889999988654
No 249
>PRK13530 arsenate reductase; Provisional
Probab=31.13 E-value=85 Score=20.13 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=15.8
Q ss_pred CeEEEEeCCCCchhHHHHHHHH
Q psy6369 56 SKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
.+||+-|.+...||+.. -+++
T Consensus 4 ~~vLFvC~~N~cRS~mA-Eal~ 24 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMA-EGWG 24 (133)
T ss_pred CEEEEEcCCchhHHHHH-HHHH
Confidence 58999999999999654 3434
No 250
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=30.83 E-value=70 Score=20.25 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=12.8
Q ss_pred EEEEeCCCCchhHHH
Q psy6369 58 VLVHCKMGISRSASV 72 (123)
Q Consensus 58 vlVHC~~G~~Rs~~~ 72 (123)
||+-|.+..+||+..
T Consensus 1 ILFvC~~N~cRS~mA 15 (138)
T PF01451_consen 1 ILFVCTGNICRSPMA 15 (138)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred CEEEeCCCcchHHHH
Confidence 788999999999553
No 251
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=30.82 E-value=59 Score=20.53 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=16.0
Q ss_pred CeEEEEeCCCCchhHHHHHHHH
Q psy6369 56 SKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
.+||+-|.+..+||+. +-+++
T Consensus 1 ~~vlfvC~~N~cRS~m-AEa~~ 21 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQM-AEGFA 21 (126)
T ss_pred CeEEEEcCCcHHHHHH-HHHHH
Confidence 3799999999999964 44434
No 252
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=68 Score=23.45 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
........+..++.|++||+.-.++-
T Consensus 80 ~s~vaa~~~~rpg~iv~HcSga~~~~ 105 (289)
T COG5495 80 YSGVAATSLNRPGTIVAHCSGANGSG 105 (289)
T ss_pred HHHHHHhcccCCCeEEEEccCCCchh
Confidence 34556666778899999998765543
No 253
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.74 E-value=2e+02 Score=20.50 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHH
Q psy6369 45 YKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMK 79 (123)
Q Consensus 45 ~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~ 79 (123)
++.+......|.+|+|-|++|.--+.-.++-.|-+
T Consensus 31 fkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e 65 (255)
T COG3484 31 FKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDE 65 (255)
T ss_pred HHHHhhccCCCceEEEEEecCccHHHHHHHHHHHH
Confidence 33444455689999999999986555555554443
No 254
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=30.41 E-value=75 Score=23.50 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeC
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCK 63 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~ 63 (123)
....+..+-+.++..++.++++||+|.
T Consensus 197 ~~av~~a~~~A~~~~R~g~gP~lie~~ 223 (300)
T PF00676_consen 197 VEAVYEAAKEAVEYARAGKGPVLIEAV 223 (300)
T ss_dssp HHHHHHHHHHHHHHHHTTT--EEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 444455555666666677899999994
No 255
>PRK02249 DNA primase large subunit; Validated
Probab=30.35 E-value=1.4e+02 Score=22.69 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6369 40 HWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~ 94 (123)
.|+.+..-+.+.++.|++ ....+-+.++.++...|+++++++.+.+.
T Consensus 221 ~fPpCm~~l~~~l~~g~~--------L~h~~R~~l~~FL~~iG~~~deil~~~~~ 267 (343)
T PRK02249 221 LFPPCMKALLSALQAGEN--------LPHTARFAITSFLLNIGMSVDEIVELFRN 267 (343)
T ss_pred cCCHHHHHHHHHHHcCCC--------CChHHHHHHHHHHHhcCCCHHHHHHHHhh
Confidence 455666777666666532 34556777777777889999999999987
No 256
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=30.20 E-value=63 Score=22.95 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=16.1
Q ss_pred HHHhCCCeEEEEeCCCCchhH
Q psy6369 50 SAKNQGSKVLVHCKMGISRSA 70 (123)
Q Consensus 50 ~~~~~~~~vlVHC~~G~~Rs~ 70 (123)
+.+++.++|+|.+.+|++.++
T Consensus 8 ~~i~~~~~ivi~tGAGiS~~s 28 (242)
T PRK00481 8 EILDKAKRIVVLTGAGISAES 28 (242)
T ss_pred HHHHhCCCEEEEeCCcccccc
Confidence 334445799999999998775
No 257
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=30.13 E-value=2.1e+02 Score=20.47 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=10.8
Q ss_pred CCCeEEEEeCCCCc
Q psy6369 54 QGSKVLVHCKMGIS 67 (123)
Q Consensus 54 ~~~~vlVHC~~G~~ 67 (123)
.|.+|+|=+++|..
T Consensus 28 ~~~kilVa~SGG~D 41 (258)
T PRK10696 28 EGDRVMVCLSGGKD 41 (258)
T ss_pred CCCEEEEEecCCHH
Confidence 46788888888886
No 258
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.11 E-value=2.1e+02 Score=20.56 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=19.1
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+++|+|-|-.|.|=.=.+++|-.....|+
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~ 88 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGY 88 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCC
Confidence 36899999999887744444444443454
No 259
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=29.99 E-value=1.8e+02 Score=19.70 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
.+.+..+..||.+.+.+|.++++-+..
T Consensus 30 ~e~~~~~~~Fi~~GL~~ge~~l~v~~~ 56 (191)
T PF14417_consen 30 EELLEVLVPFIREGLARGERCLYVAPD 56 (191)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456778999999999999999998864
No 260
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=29.86 E-value=1.3e+02 Score=18.51 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
.+.+-.+++.++++.++|.+|-|++..
T Consensus 59 sk~l~~i~~~Le~~~~~g~~V~v~Wyy 85 (99)
T PF09345_consen 59 SKALMDIFDLLEDAAQKGGKVTVNWYY 85 (99)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 455666777777777778888887743
No 261
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=29.83 E-value=69 Score=23.81 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy6369 85 LTRAMAHVRQKRNCIKPNANFITQLETYQVGVQP 118 (123)
Q Consensus 85 ~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 118 (123)
.++-.++++++|..+..++.-..++..||+.++.
T Consensus 253 iee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~~ 286 (299)
T PF03715_consen 253 IEENSKFIESKRSKVDFSPKDQAQVEAFESELKW 286 (299)
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHhccc
Confidence 6677889999999999999999999999998873
No 262
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=29.83 E-value=1.9e+02 Score=20.07 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 43 NTYKYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 43 ~~~~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
++.+.++.+...|-++.+||..|-+-+
T Consensus 184 ~~~~i~~~a~~~gi~~~~~~~~~s~i~ 210 (229)
T cd00308 184 ESRRAADLAEAFGIRVMVHGTLESSIG 210 (229)
T ss_pred HHHHHHHHHHHcCCEEeecCCCCCHHH
Confidence 456666677778889999997654433
No 263
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=29.81 E-value=44 Score=19.01 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=12.5
Q ss_pred eEEEEeCCCCchhHHH
Q psy6369 57 KVLVHCKMGISRSASV 72 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~ 72 (123)
++++-|..|.+-|-.+
T Consensus 2 kilivC~~G~~~s~~l 17 (85)
T cd05568 2 KALVVCPSGIGTSRLL 17 (85)
T ss_pred eEEEECCCCHHHHHHH
Confidence 6899999999766433
No 264
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=29.79 E-value=73 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=9.9
Q ss_pred HhCCCeEEEEeCC
Q psy6369 52 KNQGSKVLVHCKM 64 (123)
Q Consensus 52 ~~~~~~vlVHC~~ 64 (123)
..+|..||.||.+
T Consensus 118 i~~g~~ILT~~~S 130 (310)
T PRK08535 118 IRDGDVIMTHCNS 130 (310)
T ss_pred cCCCCEEEEeCCc
Confidence 3467899999955
No 265
>PRK11027 hypothetical protein; Provisional
Probab=29.75 E-value=1.3e+02 Score=19.13 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=37.6
Q ss_pred EeCCCCchhHHHHH--HHHHHHcCCCH------------HHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy6369 61 HCKMGISRSASVVI--AYAMKAYNWDL------------TRAMAHVRQKRNCIKPNANFITQLETYQVGVQP 118 (123)
Q Consensus 61 HC~~G~~Rs~~~~~--ayl~~~~~~~~------------~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~ 118 (123)
|=..|.+|||-+.+ |-++..+|..+ ++=-++|..++....|...+.+....|-...+.
T Consensus 16 nfPrGF~RsGdFTi~Ea~lLe~yG~~m~~L~~G~~~P~t~eE~~Fv~v~~g~~~~~s~~Ek~WlKY~~~i~~ 87 (112)
T PRK11027 16 NYPRGFSRSGDFTIKEAQLLERYGYAMNALDLGKREPVTEEEKQFVAVCRGEREPVTEFEKVWLKYMKRIRR 87 (112)
T ss_pred CCCCCcccCCCcCHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcC
Confidence 34568888883322 33433333211 233578888888888999999988888877643
No 266
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=29.71 E-value=1.1e+02 Score=25.44 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCCCchhHHHH--HHHHHHHcCCCHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVV--IAYAMKAYNWDLTR 87 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~--~ayl~~~~~~~~~~ 87 (123)
..|+++|-=.+|-|.|.+++ ++||+...|.++.+
T Consensus 21 ~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~ 56 (721)
T PRK11773 21 PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYS 56 (721)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhH
Confidence 45799999999999998887 58888766766643
No 267
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=29.66 E-value=3.2e+02 Score=22.50 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCeEEEEeCC-CCchhHHHHH-HHHHHHcCCCHHHHHHHHHhhC
Q psy6369 46 KYITSAKNQGSKVLVHCKM-GISRSASVVI-AYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 46 ~~i~~~~~~~~~vlVHC~~-G~~Rs~~~~~-ayl~~~~~~~~~~a~~~v~~~r 96 (123)
+.+-+++.+|..++|+=.+ ++.+.+--++ ..++...+++.++|-+++++.+
T Consensus 538 ~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~ 590 (600)
T PRK10953 538 AELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 590 (600)
T ss_pred HHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3444556678788886554 4666654444 3345566799999998888754
No 268
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=29.63 E-value=86 Score=24.11 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=18.1
Q ss_pred hCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 53 ~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
..+++|+++|..|. ||.. ++ ..+...|.
T Consensus 341 ~~d~~iVvyC~~G~-rS~~-aa-~~L~~~G~ 368 (392)
T PRK07878 341 PQDRTIVLYCKTGV-RSAE-AL-AALKKAGF 368 (392)
T ss_pred CCCCcEEEEcCCCh-HHHH-HH-HHHHHcCC
Confidence 46689999999886 7633 33 33444454
No 269
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=29.43 E-value=2.4e+02 Score=20.97 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=43.0
Q ss_pred ceEEEEEeccCCCc-----cHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6369 22 FDYCNIRVYDDDKT-----DLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 22 i~~~~ipi~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~ 94 (123)
+...++|..|-... +....++..++..+..+..+ .+=++|..|+.-. =+.+|+... +++++|.+.++.
T Consensus 36 ~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~-~~~~~~vvGvHPa---E~~~l~e~~-~~peea~e~m~~ 108 (285)
T COG1831 36 LILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEG-PVEAYAVVGVHPA---EVSRLAEAG-RSPEEALEEMRH 108 (285)
T ss_pred EEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhc-CceeEEEeccCHH---HHHHHHHhc-cChHHHHHHHHH
Confidence 55666665554322 44444555666666655544 6667999999743 345566654 899998888776
No 270
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=29.41 E-value=1.4e+02 Score=22.27 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCc
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~ 67 (123)
+++.++.|++...+ ++|+|=.++|+.
T Consensus 3 ~~~~~~~l~~~v~~-~kVvValSGGVD 28 (311)
T TIGR00884 3 IEEAVEEIREQVGD-AKVIIALSGGVD 28 (311)
T ss_pred HHHHHHHHHHHhCC-CcEEEEecCChH
Confidence 34455666665554 567777777775
No 271
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=29.28 E-value=78 Score=15.30 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=12.3
Q ss_pred CCchhHHHHHHHHHHHcCCCHHHHHHHH
Q psy6369 65 GISRSASVVIAYAMKAYNWDLTRAMAHV 92 (123)
Q Consensus 65 G~~Rs~~~~~ayl~~~~~~~~~~a~~~v 92 (123)
|+++.-+..+ | ...+.+.+.|++++
T Consensus 13 Gf~~~~~~~A--L-~~~~~nve~A~~~L 37 (37)
T PF00627_consen 13 GFSREQAREA--L-RACNGNVERAVDWL 37 (37)
T ss_dssp TS-HHHHHHH--H-HHTTTSHHHHHHHH
T ss_pred CCCHHHHHHH--H-HHcCCCHHHHHHhC
Confidence 5666533222 2 23355777777664
No 272
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=29.27 E-value=1.8e+02 Score=20.26 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCchh-----HHHHHHHHHHHcC
Q psy6369 47 YITSAKNQGSKVLVHCKMGISRS-----ASVVIAYAMKAYN 82 (123)
Q Consensus 47 ~i~~~~~~~~~vlVHC~~G~~Rs-----~~~~~ayl~~~~~ 82 (123)
+...+.+.+.....+...|.+++ ++++++|||-..+
T Consensus 23 l~~aa~kl~~~a~~~~~~~~~t~~lqWias~aAi~Llildr 63 (187)
T PF05562_consen 23 LGMAAKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDR 63 (187)
T ss_pred HHHHHHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccC
Confidence 33344444555566667888877 6778889988666
No 273
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=29.22 E-value=1.6e+02 Score=22.20 Aligned_cols=33 Identities=6% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH
Q psy6369 42 DNTYKYITSAKNQGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 42 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
....+|+....+.+++++|....|.|.|..+.+
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a 197 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSA 197 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 356678888888889999999999999866544
No 274
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=29.17 E-value=98 Score=26.11 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCchhHHHHHHH----HHHHcCCCHHHHHHHHHhhC
Q psy6369 56 SKVLVHCKMGISRSASVVIAY----AMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ay----l~~~~~~~~~~a~~~v~~~r 96 (123)
.++.+|...|. +++++.= ||...|+++++|++.+++.-
T Consensus 214 ~~~~ihlNdtH---pa~ai~ElmR~L~de~gl~~~eA~eiv~~~~ 255 (713)
T PF00343_consen 214 DKVVIHLNDTH---PAFAIPELMRILMDEEGLSWDEAWEIVRKTF 255 (713)
T ss_dssp HHEEEEEESST---TTTHHHHHHHHHHHTT---HHHHHHHHHHHE
T ss_pred cceEEeecCCc---cHHHHHHHHHHHHHHcCCCHHHHHHHHHhce
Confidence 68999999998 3566544 45567999999999999854
No 275
>PRK05667 dnaG DNA primase; Validated
Probab=29.17 E-value=86 Score=25.63 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=28.9
Q ss_pred eEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 57 KVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
+=..||.+. |.+|- ++-++|...++++.+|++++...-.
T Consensus 55 k~~~~CF~C-g~~Gd-~i~fv~~~~~~sf~eAv~~La~~~g 93 (580)
T PRK05667 55 KQFYHCFGC-GAGGD-VIKFLMEYEGLSFVEAVEELADRAG 93 (580)
T ss_pred CCeEEECCC-CCCCC-HHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 336899743 34444 4567899999999999999987654
No 276
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=29.10 E-value=94 Score=18.42 Aligned_cols=39 Identities=23% Similarity=0.475 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHh-CC-CeEE-EEeCCCCchhHHHHHHH
Q psy6369 38 LKHWDNTYKYITSAKN-QG-SKVL-VHCKMGISRSASVVIAY 76 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~-~~-~~vl-VHC~~G~~Rs~~~~~ay 76 (123)
.+...+-++.++.... +| ++|| +=|+.|+|-++.+++++
T Consensus 20 ~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 20 ARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 3444555555554221 23 6777 56899999999888886
No 277
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=29.04 E-value=72 Score=22.25 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=16.7
Q ss_pred CeEEEEeCCCCchhHHHHHHHHHHHcC
Q psy6369 56 SKVLVHCKMGISRSASVVIAYAMKAYN 82 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ayl~~~~~ 82 (123)
+++|+--++|+. +.+++|+|.++|
T Consensus 4 gk~l~LlSGGiD---SpVAa~lm~krG 27 (197)
T PF02568_consen 4 GKALALLSGGID---SPVAAWLMMKRG 27 (197)
T ss_dssp -EEEEE-SSCCH---HHHHHHHHHCBT
T ss_pred ceEEEEecCCcc---HHHHHHHHHHCC
Confidence 578888888886 566777877765
No 278
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.97 E-value=2.2e+02 Score=20.38 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=41.3
Q ss_pred EEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHH---------------cCCCHHHHHH
Q psy6369 26 NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKA---------------YNWDLTRAMA 90 (123)
Q Consensus 26 ~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~---------------~~~~~~~a~~ 90 (123)
.+-+.|+-..-....+.+.++.+++.... .++-+||+.-.|=+.+-+++-+..- .+.+.++.+.
T Consensus 157 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~aGN~~~E~lv~ 235 (263)
T cd07943 157 CVYVTDSAGAMLPDDVRERVRALREALDP-TPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVA 235 (263)
T ss_pred EEEEcCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCCcCCccHHHHHH
Confidence 45667775444455566666666654432 3899999987776655554433210 1266777777
Q ss_pred HHHhh
Q psy6369 91 HVRQK 95 (123)
Q Consensus 91 ~v~~~ 95 (123)
+++..
T Consensus 236 ~L~~~ 240 (263)
T cd07943 236 VLERM 240 (263)
T ss_pred HHHhc
Confidence 77654
No 279
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=28.92 E-value=1.1e+02 Score=16.76 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 73 VIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 73 ~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
-+.|++.++|.|.++.-+.|+..-+
T Consensus 22 ev~ywa~~~gvt~~~L~~AV~~vG~ 46 (57)
T PF12244_consen 22 EVRYWAKRFGVTEEQLREAVRAVGN 46 (57)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHCc
Confidence 4679999999999999999998776
No 280
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=28.89 E-value=1.4e+02 Score=24.05 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=32.9
Q ss_pred eEEEEE-eccCCCccHHHHHHHHHHHHHHHHhCCC-eEEEEe-CCCCchhHHHHHHHHH
Q psy6369 23 DYCNIR-VYDDDKTDLLKHWDNTYKYITSAKNQGS-KVLVHC-KMGISRSASVVIAYAM 78 (123)
Q Consensus 23 ~~~~ip-i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~vlVHC-~~G~~Rs~~~~~ayl~ 78 (123)
..+-+. +.|.+..+-.+++. ..++.+.++|- +|+||| ..|..-++.-+..|+-
T Consensus 107 ~lHl~GL~SdGgVHsh~~hl~---~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~ 162 (501)
T TIGR01307 107 KLHLMGLVSDGGVHSHIDHLI---ALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLE 162 (501)
T ss_pred ceEEEEeccCCCCcchHHHHH---HHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHH
Confidence 344444 35666666555444 44555555664 799999 4588877777777763
No 281
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=28.81 E-value=2.6e+02 Score=21.11 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=32.4
Q ss_pred EEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHH
Q psy6369 26 NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 26 ~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~a 75 (123)
.+-+.|+...-..+.+.+.+..+++.....-++-+||+.-.|=+.+-+++
T Consensus 159 ~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANsla 208 (333)
T TIGR03217 159 CVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIA 208 (333)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHH
Confidence 45667775555555566677777766654568999998866655444443
No 282
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=28.71 E-value=1.2e+02 Score=22.49 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH---HHHHHHcCCCH
Q psy6369 39 KHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI---AYAMKAYNWDL 85 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~---ayl~~~~~~~~ 85 (123)
+.+.++++.+-+.+++|++|++. |.|-|+.++. +.+.-.+|.++
T Consensus 46 ~~I~~av~~~~~~l~~ggrI~~~---GaGtSg~la~~da~e~~~tfg~~~ 92 (299)
T PRK05441 46 PQIAAAVDAAAAALRQGGRLIYI---GAGTSGRLGVLDASECPPTFGVPP 92 (299)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHHHHHHHhCcCccCCCc
Confidence 34556667777777788886544 4444555443 33333455543
No 283
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=28.70 E-value=1.6e+02 Score=18.77 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=25.1
Q ss_pred CccHHHHHHHHHHHHHHHHh----CCCeEEEEeCCCCchh
Q psy6369 34 KTDLLKHWDNTYKYITSAKN----QGSKVLVHCKMGISRS 69 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs 69 (123)
.+...+...++..++++... .+++|+|-..+|.-|+
T Consensus 115 gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~ 154 (155)
T smart00855 115 GESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRA 154 (155)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCccccc
Confidence 34556666777777777654 4678999988887664
No 284
>PRK10565 putative carbohydrate kinase; Provisional
Probab=28.57 E-value=2e+02 Score=23.09 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 46 KYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 46 ~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+++.+....+.+|+|-|..|.|=.=.+++|......|+
T Consensus 51 ~~i~~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~ 88 (508)
T PRK10565 51 QVARSAYPDARHWLVLCGHGNNGGDGYVVARLAQAAGI 88 (508)
T ss_pred HHHHHhcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCC
Confidence 34433333456899999999887755555555444454
No 285
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=28.53 E-value=74 Score=23.63 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=9.9
Q ss_pred HhCCCeEEEEeCC
Q psy6369 52 KNQGSKVLVHCKM 64 (123)
Q Consensus 52 ~~~~~~vlVHC~~ 64 (123)
..+|..||.||.+
T Consensus 113 i~~g~~ILT~~~S 125 (301)
T TIGR00511 113 IRDGDVVMTHCNS 125 (301)
T ss_pred cCCCCEEEEECCc
Confidence 3467899999955
No 286
>PRK05434 phosphoglyceromutase; Provisional
Probab=28.52 E-value=1.5e+02 Score=23.95 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=33.8
Q ss_pred eEEEEE-eccCCCccHHHHHHHHHHHHHHHHhCC-CeEEEEe-CCCCchhHHHHHHHHH
Q psy6369 23 DYCNIR-VYDDDKTDLLKHWDNTYKYITSAKNQG-SKVLVHC-KMGISRSASVVIAYAM 78 (123)
Q Consensus 23 ~~~~ip-i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~vlVHC-~~G~~Rs~~~~~ayl~ 78 (123)
..+-+. +.|.+..+-.++ +...++.+.++| ++|+||| ..|..-++.-+..|+-
T Consensus 111 ~lHl~GL~SdggVHsh~~h---l~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~ 166 (507)
T PRK05434 111 ALHLMGLLSDGGVHSHIDH---LFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLE 166 (507)
T ss_pred eEEEEEeccCCCcccHHHH---HHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHH
Confidence 344444 356666655554 445555555666 4999999 4588888887777763
No 287
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=28.41 E-value=1.3e+02 Score=17.81 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=13.8
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHH
Q psy6369 72 VVIAYAMKAY-NWDLTRAMAHVR 93 (123)
Q Consensus 72 ~~~ayl~~~~-~~~~~~a~~~v~ 93 (123)
-++.||+... |+++.+.=+.+-
T Consensus 33 ~ia~yl~~~~~~~s~~~Ig~~fg 55 (90)
T cd06571 33 QIAMYLARELTGLSLPEIGRAFG 55 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhC
Confidence 3456777654 788777655554
No 288
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=27.91 E-value=1.3e+02 Score=17.42 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
+.++.+-+ .... .++++|++.+|
T Consensus 74 ~~~v~~~i-~~~~-~~~~vis~~ag 96 (96)
T PF03807_consen 74 LPEVLSEI-PHLL-KGKLVISIAAG 96 (96)
T ss_dssp HHHHHHHH-HHHH-TTSEEEEESTT
T ss_pred HHHHHHHH-hhcc-CCCEEEEeCCC
Confidence 33455555 3333 35999999887
No 289
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=27.88 E-value=70 Score=15.99 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHcC
Q psy6369 69 SASVVIAYAMKAYN 82 (123)
Q Consensus 69 s~~~~~ayl~~~~~ 82 (123)
+|.+++||+..++|
T Consensus 19 ~GlfvaAylQYrRg 32 (37)
T PRK00665 19 AGLFVAAWNQYKRG 32 (37)
T ss_pred HHHHHHHHHHHhcc
Confidence 46778888887765
No 290
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=27.81 E-value=1.5e+02 Score=17.94 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCc
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~ 67 (123)
+.++.+.++.+...|-++.+||. +-+
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred HHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 34577888888889999999996 443
No 291
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=27.77 E-value=1.1e+02 Score=20.41 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=9.4
Q ss_pred CCeEEEEe-CCCCch
Q psy6369 55 GSKVLVHC-KMGISR 68 (123)
Q Consensus 55 ~~~vlVHC-~~G~~R 68 (123)
+++||+|= .+|+.|
T Consensus 90 ~~RvLFHYnGhGvP~ 104 (154)
T PF14538_consen 90 DERVLFHYNGHGVPR 104 (154)
T ss_pred CceEEEEECCCCCCC
Confidence 47899883 446665
No 292
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=27.76 E-value=71 Score=15.98 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHcCC
Q psy6369 69 SASVVIAYAMKAYNW 83 (123)
Q Consensus 69 s~~~~~ayl~~~~~~ 83 (123)
.|.+++||+..++|-
T Consensus 19 ~GlfvaAylQYrRg~ 33 (37)
T CHL00008 19 AGLFVTAYLQYRRGD 33 (37)
T ss_pred HHHHHHHHHHHhhcc
Confidence 467788888877653
No 293
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.70 E-value=2.1e+02 Score=19.84 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=27.4
Q ss_pred EEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHH
Q psy6369 26 NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 26 ~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~ 71 (123)
.+-+.|+...-....+.+.+..+++.... .++-+||+.-.|-+.+
T Consensus 153 ~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~Gla~A 197 (237)
T PF00682_consen 153 IIYLADTVGIMTPEDVAELVRALREALPD-IPLGFHAHNDLGLAVA 197 (237)
T ss_dssp EEEEEETTS-S-HHHHHHHHHHHHHHSTT-SEEEEEEBBTTS-HHH
T ss_pred EEEeeCccCCcCHHHHHHHHHHHHHhccC-CeEEEEecCCccchhH
Confidence 35566765444455566677777776655 6888999876654433
No 294
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=27.54 E-value=2.8e+02 Score=21.11 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHhCCCeEEEEeCCCCchhHHHHH-HHHHHHc----CCCHHHHHHHHHhhCC
Q psy6369 48 ITSAKNQGSKVLVHCKMGISRSASVVI-AYAMKAY----NWDLTRAMAHVRQKRN 97 (123)
Q Consensus 48 i~~~~~~~~~vlVHC~~G~~Rs~~~~~-ayl~~~~----~~~~~~a~~~v~~~rp 97 (123)
+.+...++..++|+=..++.++..-++ ..++... +++.++|-+++++.+-
T Consensus 321 ~~~~~~~~~~vyiCGp~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~ 375 (384)
T cd06206 321 VWELWEQGARVYVCGDGRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRN 375 (384)
T ss_pred HHHHHHCCcEEEEECCCchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHH
Confidence 333344667888887788888755444 3344455 7999999999988653
No 295
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=27.35 E-value=53 Score=21.42 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=15.3
Q ss_pred CeEEEEeCCCCchhHHHH
Q psy6369 56 SKVLVHCKMGISRSASVV 73 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~ 73 (123)
.+||+-|.+-.+||+..=
T Consensus 3 ~kVLFVC~gN~cRSpmAE 20 (139)
T COG0394 3 MKVLFVCTGNICRSPMAE 20 (139)
T ss_pred ceEEEEcCCCcccCHHHH
Confidence 589999999999997643
No 296
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.20 E-value=1.1e+02 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCch
Q psy6369 40 HWDNTYKYITSAKNQGSKVLVHCKMGISR 68 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 68 (123)
.+.++++++++.-.. .-+|.||..++.-
T Consensus 161 ei~~av~~~r~~g~~-~i~LLhC~s~YPa 188 (347)
T COG2089 161 EIEEAVAILRENGNP-DIALLHCTSAYPA 188 (347)
T ss_pred HHHHHHHHHHhcCCC-CeEEEEecCCCCC
Confidence 355566665553322 3599999887743
No 297
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=26.85 E-value=1.4e+02 Score=21.20 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
....+..++.++....++|+.||+.++.
T Consensus 44 T~~~L~~A~~~i~~~~~~~g~iLfV~tk 71 (225)
T TIGR01011 44 TLQLLKEAYNFVKDVAANGGKILFVGTK 71 (225)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4566889999999999999999988864
No 298
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=26.65 E-value=1.5e+02 Score=20.39 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
....+..++.++.....+|+.||+-++.
T Consensus 38 T~~~L~~A~~~i~~i~~~~g~iLfV~t~ 65 (193)
T cd01425 38 TLEKLRLALNFIANIAAKGGKILFVGTK 65 (193)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4456889999999999999999998865
No 299
>PRK14986 glycogen phosphorylase; Provisional
Probab=26.63 E-value=1.7e+02 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=32.9
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHhhC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMK----AYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~----~~~~~~~~a~~~v~~~r 96 (123)
+.++.+|-..|. +++++.-||+ ..|++.++|++.+++.-
T Consensus 312 ~~~v~ihlNDtH---pa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~ 354 (815)
T PRK14986 312 ADKIAIHLNDTH---PVLSIPELMRLLIDEHKFSWDDAFEVCCQVF 354 (815)
T ss_pred CcccEEEecCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHhhE
Confidence 478899999998 6888887775 44899999999999865
No 300
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.59 E-value=1.2e+02 Score=18.60 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHhhC
Q psy6369 66 ISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 66 ~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~r 96 (123)
.||||+-.+.+.+-..+.+..+-++.+.+..
T Consensus 48 ~g~SPt~eLL~~WG~~n~Tv~~L~~~L~k~k 78 (97)
T cd08307 48 RGRSPTEELLDIWGNKNHTITELFVLLYREK 78 (97)
T ss_pred CCCChHHHHHHHHhhcCCCHHHHHHHHHHhc
Confidence 4689999998888777899888888777654
No 301
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=26.58 E-value=2.8e+02 Score=20.90 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEEEeCC-CCchhHHHHHH-HHHHHcCCCHHHHHHHHHhhC
Q psy6369 47 YITSAKNQGSKVLVHCKM-GISRSASVVIA-YAMKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 47 ~i~~~~~~~~~vlVHC~~-G~~Rs~~~~~a-yl~~~~~~~~~~a~~~v~~~r 96 (123)
.+.+...++..++|+=.. ++.+...-++. .++...+++.++|-+++++.+
T Consensus 299 ~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 350 (360)
T cd06199 299 ELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELK 350 (360)
T ss_pred HHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333344456678876666 78777555543 345566799999988888755
No 302
>TIGR00625 tfb2 Transcription factor tfb2. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.36 E-value=2e+02 Score=22.85 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHHcCCCHHHHHHHHHhh-CCCC------CCCHHHHHHHHHHHhhhc
Q psy6369 65 GISRSASVVIAYAMKAYNWDLTRAMAHVRQK-RNCI------KPNANFITQLETYQVGVQ 117 (123)
Q Consensus 65 G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~-rp~~------~~~~~~~~~L~~~~~~l~ 117 (123)
=+.|...--+ ...|.+.++.+.+++.. .|.+ ...+....|++-||.+.+
T Consensus 332 ~iTr~Sv~~A----~~~GITa~qIi~fl~~~ahp~~~~~~~~~lP~tv~dQi~lWe~e~~ 387 (448)
T TIGR00625 332 QITRESIRRA----LANGITAQQIIHYLRTHAHPQMRKEQTPVLPPTIVDQIRLWELERD 387 (448)
T ss_pred EecHHHHHHH----HHcCCCHHHHHHHHHhcCChhhhccCCCCCChHHHHHHHHHHHHhc
Confidence 3566644333 25799999999999953 2333 456799999999998754
No 303
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.18 E-value=2.5e+02 Score=22.28 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=20.0
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+++|+|-|..|.|=.=.+++|-.+...|+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~ 87 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGY 87 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 36899999999988755555444444454
No 304
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=26.15 E-value=1.4e+02 Score=17.29 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy6369 35 TDLLKHWDNTYKYITSAKNQGSKVLVH 61 (123)
Q Consensus 35 ~~~~~~~~~~~~~i~~~~~~~~~vlVH 61 (123)
.+....++...+.|.+.+.+|+.|-++
T Consensus 19 ~~v~~vl~~l~~~i~~~L~~g~~V~i~ 45 (90)
T smart00411 19 KDAKAAVDAFLEIITEALKKGEKVELR 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 345566888999999999999988875
No 305
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=26.03 E-value=2.1e+02 Score=23.21 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCeEEEEeCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 55 GSKVLVHCKM-GISRSASVVIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 55 ~~~vlVHC~~-G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
..+.+-||.+ |.+.. +..++|...|.++.+|+..+..+-.
T Consensus 51 ~~k~~yhCFGCg~~Gd---~i~Fl~~~~g~sf~eav~~La~~~g 91 (568)
T COG0358 51 PEKGFYHCFGCGAGGD---AIKFLMELLGLSFDEAVLQLAGRAG 91 (568)
T ss_pred CCCCeEecCCCCCCcc---HHHHHHHhcCCCHHHHHHHHHHHhC
Confidence 3688999965 44433 4568999999999999999988765
No 306
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.96 E-value=1.3e+02 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
..+.++.+++|+.+...+|+.||+.-+-
T Consensus 46 T~~~l~~A~~~v~~~~~~~g~ILfVgTK 73 (252)
T COG0052 46 TLERLREAYKFLRRIAANGGKILFVGTK 73 (252)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEech
Confidence 3466889999999999999999998765
No 307
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=25.81 E-value=1.4e+02 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
....+..++.|+.....+|+.||+-++.-
T Consensus 41 T~~~L~~A~~~i~~~~~~gg~iLfVgTk~ 69 (326)
T PRK12311 41 TVPLLHRALQAVSDTVAKGGRVLFVGTKR 69 (326)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 34568899999999999999999988653
No 308
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.74 E-value=3.1e+02 Score=21.00 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=47.7
Q ss_pred EEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHH---------------cCCCHHHHHH
Q psy6369 26 NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKA---------------YNWDLTRAMA 90 (123)
Q Consensus 26 ~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~---------------~~~~~~~a~~ 90 (123)
.+-+.|....-....+.+.+..+.+.. +-++-+||+.-.|-+.+-+++-+..- .+.++++.+.
T Consensus 161 ~I~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~ 238 (378)
T PRK11858 161 RVRFCDTVGILDPFTMYELVKELVEAV--DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVM 238 (378)
T ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHH
Confidence 355556644434444555666666554 46899999987776655555444221 1256777777
Q ss_pred HHHhhCC-CCCCCHHHHHHHHHHH
Q psy6369 91 HVRQKRN-CIKPNANFITQLETYQ 113 (123)
Q Consensus 91 ~v~~~rp-~~~~~~~~~~~L~~~~ 113 (123)
.++.... ....+..-+..+.++-
T Consensus 239 ~L~~~~g~~~~idl~~l~~~s~~v 262 (378)
T PRK11858 239 ALKYLYGIDLGIDTERLYELSRLV 262 (378)
T ss_pred HHHHHhCCCCCcCHHHHHHHHHHH
Confidence 7764332 2234444444444433
No 309
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=25.56 E-value=1.4e+02 Score=24.43 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=31.4
Q ss_pred eEEEEE-eccCCCccHHHHHHHHHHHHHHHHhCC-CeEEEEeC-CCCchhHHHHHHHHH
Q psy6369 23 DYCNIR-VYDDDKTDLLKHWDNTYKYITSAKNQG-SKVLVHCK-MGISRSASVVIAYAM 78 (123)
Q Consensus 23 ~~~~ip-i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~vlVHC~-~G~~Rs~~~~~ayl~ 78 (123)
..+-+. +.|.+..+-.+++. ..++.+.++| .+|+|||. .|..-.+.-+..|+-
T Consensus 128 ~lHl~GL~SdGGVHSh~~Hl~---al~~~a~~~gv~~v~vH~f~DGRDt~p~S~~~yl~ 183 (558)
T PLN02538 128 TLHLIGLLSDGGVHSRLDQLQ---LLLKGAAERGAKRIRVHVLTDGRDVPDGSSVGFVE 183 (558)
T ss_pred eeEEEEeccCCCcccHHHHHH---HHHHHHHHcCCCeEEEEEEcCCCCCCcccHHHHHH
Confidence 344444 35666666555444 4455555566 48999994 477666666666553
No 310
>PLN02180 gamma-glutamyl transpeptidase 4
Probab=25.54 E-value=1.6e+02 Score=24.48 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHH--HHHcCCCHHHHHHHHHh
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYA--MKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl--~~~~~~~~~~a~~~v~~ 94 (123)
+|+++++....|-.|-++.++-.+ +..+|+++++|+..=|-
T Consensus 500 ~g~~~lalGs~GG~~I~~av~Qviln~l~~Gm~lq~AI~aPR~ 542 (639)
T PLN02180 500 DGEFVAALGGAGGMHIIPAVLQVFLNCFVLNMKPKEAVESARI 542 (639)
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHHhCCCCHHHHHhcCcc
Confidence 477999999999777666555444 44679999999987664
No 311
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=25.49 E-value=69 Score=20.20 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHH---hCCCeEEEEeCCCCch
Q psy6369 36 DLLKHWDNTYKYITSAK---NQGSKVLVHCKMGISR 68 (123)
Q Consensus 36 ~~~~~~~~~~~~i~~~~---~~~~~vlVHC~~G~~R 68 (123)
+..+...++.++++... ..++.|+|-+.+|.-|
T Consensus 121 s~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~ 156 (158)
T PF00300_consen 121 SWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIR 156 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHH
Confidence 45555666666666666 5788998888776544
No 312
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.44 E-value=1.1e+02 Score=21.05 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=18.2
Q ss_pred CCCCchhHHHHHHHHHH--HcCCCHHHHHHHHHh
Q psy6369 63 KMGISRSASVVIAYAMK--AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 63 ~~G~~Rs~~~~~ayl~~--~~~~~~~~a~~~v~~ 94 (123)
..|.+. ..+..+|=. +.+++.+||++.+..
T Consensus 162 a~G~~~--~~~~~~L~~~~~~~ls~eeai~l~~~ 193 (213)
T cd03753 162 AIGSGS--EGAQSSLQEKYHKDMTLEEAEKLALS 193 (213)
T ss_pred EECCCc--HHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 334443 344444433 345899999988776
No 313
>KOG3354|consensus
Probab=25.42 E-value=83 Score=21.63 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=49.6
Q ss_pred EEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHH--------------HHcCCCHHHHHHHH
Q psy6369 27 IRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAM--------------KAYNWDLTRAMAHV 92 (123)
Q Consensus 27 ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~--------------~~~~~~~~~a~~~v 92 (123)
+|+.|+.. .+++..+.......+..|..|.+-|++=.-+=--+.---+- ....-|.+...+.+
T Consensus 59 ipLnD~DR---~pWL~~i~~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl 135 (191)
T KOG3354|consen 59 IPLNDDDR---WPWLKKIAVELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRL 135 (191)
T ss_pred CCCCcccc---cHHHHHHHHHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHH
Confidence 45555543 34666777777777778999999997633111111100000 00123667777777
Q ss_pred HhhCCCCCCCHHHHHHHHHHH
Q psy6369 93 RQKRNCIKPNANFITQLETYQ 113 (123)
Q Consensus 93 ~~~rp~~~~~~~~~~~L~~~~ 113 (123)
+++....-|..-.+.|+..+|
T Consensus 136 ~~R~gHFMp~~lleSQf~~LE 156 (191)
T KOG3354|consen 136 KKRKGHFMPADLLESQFATLE 156 (191)
T ss_pred hhcccccCCHHHHHHHHHhcc
Confidence 777777777777777776655
No 314
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=25.24 E-value=1e+02 Score=18.66 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=15.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCchh
Q psy6369 47 YITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 47 ~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
++....+...+|.|+|..+.+|.
T Consensus 18 ~~~~~~~~~~~V~i~l~~~~~r~ 40 (89)
T PTZ00138 18 QIFRFFTEKTRVQIWLYDHPNLR 40 (89)
T ss_pred HHHHHhcCCcEEEEEEEeCCCcE
Confidence 34444455679999998877654
No 315
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=25.14 E-value=1.6e+02 Score=20.22 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=14.0
Q ss_pred CCCeEEEEeCCCCchhHH
Q psy6369 54 QGSKVLVHCKMGISRSAS 71 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~ 71 (123)
..|-|.|+|..|.|.|.+
T Consensus 20 ~~Gli~VYtGdGKGKTTA 37 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTS 37 (178)
T ss_pred CCCEEEEEeCCCCCchHH
Confidence 346888999999998844
No 316
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=24.99 E-value=1.2e+02 Score=21.08 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=18.5
Q ss_pred eCCCCchhHHHHHHHHHH--HcCCCHHHHHHHHHh
Q psy6369 62 CKMGISRSASVVIAYAMK--AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 62 C~~G~~Rs~~~~~ayl~~--~~~~~~~~a~~~v~~ 94 (123)
|..|.+.. .+-.+|=. +.+++.++|++.++.
T Consensus 158 ~a~G~g~~--~~~~~L~~~~~~~~~~eeai~l~~~ 190 (224)
T TIGR03633 158 TAIGAGRQ--AVTEFLEKEYREDLSLDEAIELALK 190 (224)
T ss_pred EEECCCCH--HHHHHHHHhccCCCCHHHHHHHHHH
Confidence 34455444 33344433 346899999988776
No 317
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=24.75 E-value=2.2e+02 Score=18.93 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.2
Q ss_pred CCeEEEEeCCCCchhHHHHHH
Q psy6369 55 GSKVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~a 75 (123)
|+.++|....|.|.|-+.++.
T Consensus 36 ~~~~li~~~TG~GKT~~~~~~ 56 (203)
T cd00268 36 GRDVIGQAQTGSGKTAAFLIP 56 (203)
T ss_pred CCcEEEECCCCCcHHHHHHHH
Confidence 789999999999999665444
No 318
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=24.70 E-value=3.4e+02 Score=21.21 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=32.1
Q ss_pred EEEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH
Q psy6369 25 CNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA 77 (123)
Q Consensus 25 ~~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl 77 (123)
..+.+.|.-.--....+.+.++.+.+...+.-.+=+||+.=.|-+.+=.++-+
T Consensus 161 ~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv 213 (409)
T COG0119 161 DRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAV 213 (409)
T ss_pred cEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHH
Confidence 45666676433344446667777776655445778999887766655444433
No 319
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=24.67 E-value=2.9e+02 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.9
Q ss_pred CCccHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 33 DKTDLLKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
.++...+-++++++.|.++..++++|+|+-..
T Consensus 47 ~~P~~l~~m~~a~~ri~~ai~~~e~I~I~gDy 78 (575)
T PRK11070 47 LPWQQLSGIEKAVELLYNALREGTRIIVVGDF 78 (575)
T ss_pred CChHHhhCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 34455666889999999999999999998754
No 320
>PRK10347 cell filamentation protein Fic; Provisional
Probab=24.44 E-value=1.3e+02 Score=21.03 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=31.5
Q ss_pred EEEe-CCCCchhHHHHHHHHHHHcC----CCHHHHHHHHHhhCCCCCCCHHHHHH
Q psy6369 59 LVHC-KMGISRSASVVIAYAMKAYN----WDLTRAMAHVRQKRNCIKPNANFITQ 108 (123)
Q Consensus 59 lVHC-~~G~~Rs~~~~~ayl~~~~~----~~~~~a~~~v~~~rp~~~~~~~~~~~ 108 (123)
.||. ..|.|||..+.+..|....| |+.-+.-++++........+...+.+
T Consensus 133 ~iHPFREGNGRt~r~f~~~la~~aG~~idw~~~~~~~~~~A~~~a~~~d~~~L~~ 187 (200)
T PRK10347 133 VLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMGDLTALQM 187 (200)
T ss_pred HhccccCCCHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHhcCChHHHHH
Confidence 6787 45999999998888887766 44444455555554434444444433
No 321
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=24.34 E-value=1.1e+02 Score=20.64 Aligned_cols=15 Identities=7% Similarity=-0.039 Sum_probs=11.6
Q ss_pred HcCCCHHHHHHHHHh
Q psy6369 80 AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 80 ~~~~~~~~a~~~v~~ 94 (123)
+.+++.++|++.++.
T Consensus 144 ~~~~~~~ea~~l~~~ 158 (188)
T cd03764 144 KEDMTVEEAKKLAIR 158 (188)
T ss_pred CCCCCHHHHHHHHHH
Confidence 446899999888765
No 322
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=24.29 E-value=1.3e+02 Score=20.69 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=18.6
Q ss_pred eCCCCchhHHHHHHHHHH--HcCCCHHHHHHHHHh
Q psy6369 62 CKMGISRSASVVIAYAMK--AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 62 C~~G~~Rs~~~~~ayl~~--~~~~~~~~a~~~v~~ 94 (123)
|..|.+.. .+..+|=. +.+|+.++|++.++.
T Consensus 157 ~a~G~g~~--~~~~~Le~~~~~~m~~~ea~~l~~~ 189 (211)
T cd03756 157 TAIGSGRQ--AVTEFLEKEYKEDMSLEEAIELALK 189 (211)
T ss_pred EEECCCCH--HHHHHHHhhccCCCCHHHHHHHHHH
Confidence 44455544 33333333 446899999988776
No 323
>COG3654 Doc Prophage maintenance system killer protein [General function prediction only]
Probab=24.24 E-value=2.2e+02 Score=18.70 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEe-CCCCchhHHHHHHHHHHHcC----CCHHHHHHHHHhhC
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHC-KMGISRSASVVIAYAMKAYN----WDLTRAMAHVRQKR 96 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC-~~G~~Rs~~~~~ayl~~~~~----~~~~~a~~~v~~~r 96 (123)
.+.|+-+........++ |+ ..|.=|++.+++..+....| ++.+++++.+...-
T Consensus 51 ~dvfelAA~~~~~l~kn------H~F~dgNKRtal~a~~~FL~lNGy~l~a~~d~~~~~~~~la 108 (132)
T COG3654 51 PDVFELAAAYFVALIKN------HAFADGNKRTALAAALLFLLLNGYELTASQDELVDMIVDLA 108 (132)
T ss_pred CcHHHHHHHHHHHHHhc------CCCCCccHHHHHHHHHHHHHhCCeeeeccHHHHHHHHHHHH
Confidence 34455555555555554 33 45888998888766666556 67777777776654
No 324
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=24.19 E-value=1.1e+02 Score=17.87 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=14.7
Q ss_pred HHHcCCCHHHHHHHHHhhC
Q psy6369 78 MKAYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 78 ~~~~~~~~~~a~~~v~~~r 96 (123)
....|++.++|++.+...|
T Consensus 63 ~~~~g~~~~~ai~~le~~R 81 (81)
T PF12550_consen 63 ANERGISEEEAIEILEEIR 81 (81)
T ss_pred HHHcCCCHHHHHHHHHhcC
Confidence 4557899999998887655
No 325
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=24.11 E-value=1.3e+02 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=27.4
Q ss_pred CeEEEEeCCCCchhHHHHHHH----HHHHcCCCHHHHHHHHHhh
Q psy6369 56 SKVLVHCKMGISRSASVVIAY----AMKAYNWDLTRAMAHVRQK 95 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ay----l~~~~~~~~~~a~~~v~~~ 95 (123)
.+..+||..|. ++++..- +|...+++.++|+..++..
T Consensus 248 ~pdViH~ND~H---aal~~lE~~R~ll~~~g~~~~~A~e~vr~~ 288 (778)
T cd04299 248 KPTVYHMNEGH---AAFLGLERIRELMAEGGLSFDEALEAVRAS 288 (778)
T ss_pred CCeEEEeCCCc---HHHHHHHHHHHHHHHcCCCHHHHHHhhCCe
Confidence 68999999998 4566553 3444579999999877653
No 326
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=24.08 E-value=3.8e+02 Score=22.40 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCCCchhHHHH--HHHHHHHcCCCHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVV--IAYAMKAYNWDLTR 87 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~--~ayl~~~~~~~~~~ 87 (123)
..|+++|-=.+|-|.|-+++ ++||+...+.++++
T Consensus 16 ~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~ 51 (726)
T TIGR01073 16 TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWN 51 (726)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHH
Confidence 45799999999999998877 58898876776655
No 327
>CHL00067 rps2 ribosomal protein S2
Probab=24.00 E-value=1.7e+02 Score=20.88 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G 65 (123)
....+..++.|+....++|+.||+-++.-
T Consensus 50 T~~~L~~A~~~i~~i~~~~g~ILfV~t~~ 78 (230)
T CHL00067 50 TARFLSEACDLVFDAASKGKKFLFVGTKK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCcH
Confidence 34568899999999998999999988663
No 328
>KOG4388|consensus
Probab=23.89 E-value=2e+02 Score=24.11 Aligned_cols=24 Identities=4% Similarity=-0.128 Sum_probs=14.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccc
Q psy6369 97 NCIKPNANFITQLETYQVGVQPSL 120 (123)
Q Consensus 97 p~~~~~~~~~~~L~~~~~~l~~~~ 120 (123)
|.+-..+..++-+-.|...++...
T Consensus 439 PEaPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 439 PEAPFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCHH
Confidence 445555566666666766665543
No 329
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=23.86 E-value=79 Score=19.47 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.7
Q ss_pred HHHHHHhCCCeEEEEeCCCC
Q psy6369 47 YITSAKNQGSKVLVHCKMGI 66 (123)
Q Consensus 47 ~i~~~~~~~~~vlVHC~~G~ 66 (123)
.|++...+.|+++.|=++|-
T Consensus 2 li~~L~~~HG~lmFhQSGGC 21 (95)
T PF05610_consen 2 LIRRLKAKHGPLMFHQSGGC 21 (95)
T ss_pred HHHHHHHhcCCEEEEeCCCC
Confidence 56777777889999977775
No 330
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=23.73 E-value=1.5e+02 Score=20.93 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
++++.+.+.+.....+.|.||=.+|+|-|..+..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~ 38 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQ 38 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeee
Confidence 4455666665445567888999999999955444
No 331
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=23.53 E-value=1.7e+02 Score=20.10 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=14.3
Q ss_pred HHHHHHHhCCCeEEEEeCCC
Q psy6369 46 KYITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 46 ~~i~~~~~~~~~vlVHC~~G 65 (123)
.+++.+.+.+.+|.+||..+
T Consensus 112 ~~~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 112 AQLELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHhCCCeEEEeeCc
Confidence 34555556688999999765
No 332
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.51 E-value=1.4e+02 Score=21.51 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=13.7
Q ss_pred CCCCchhHHHH-HHHHHHHcC
Q psy6369 63 KMGISRSASVV-IAYAMKAYN 82 (123)
Q Consensus 63 ~~G~~Rs~~~~-~ayl~~~~~ 82 (123)
.+|+|+|...+ +|+...+.|
T Consensus 10 kGGvG~TTltAnLA~aL~~~G 30 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLG 30 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCC
Confidence 67899985444 577777655
No 333
>PRK10318 hypothetical protein; Provisional
Probab=23.47 E-value=2.1e+02 Score=18.41 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHh----CCCeEEEEeCCCCchhH
Q psy6369 41 WDNTYKYITSAKN----QGSKVLVHCKMGISRSA 70 (123)
Q Consensus 41 ~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~ 70 (123)
+..+=+||+..-. .|++=.|+|..|--+++
T Consensus 70 i~taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~S 103 (121)
T PRK10318 70 IDTAEQFIDKVASSSSISGKPYIVKCPGKSDENA 103 (121)
T ss_pred cccHHHHHHHHhhhcccCCCCeEEEcCCCCcccH
Confidence 3345678887766 38999999999975443
No 334
>PLN02150 terpene synthase/cyclase family protein
Probab=23.39 E-value=1.2e+02 Score=18.38 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6369 70 ASVVIAYAMKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 70 ~~~~~ayl~~~~~~~~~~a~~~v~~ 94 (123)
++-+-+|+-. +|.+.++|.+.++.
T Consensus 7 aSsIeCYMke-~g~seeeA~~~i~~ 30 (96)
T PLN02150 7 ANGVNCYMKQ-HGVTKEEAVSELKK 30 (96)
T ss_pred hHHHHHHhcc-CCCCHHHHHHHHHH
Confidence 4455565554 59999999988877
No 335
>PRK08624 hypothetical protein; Provisional
Probab=23.24 E-value=54 Score=25.31 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=30.4
Q ss_pred eEEEEeCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhCC
Q psy6369 57 KVLVHCKMGISRSASVVIAYAMK-----AYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~~ayl~~-----~~~~~~~~a~~~v~~~rp 97 (123)
+=+.||.+|-|=+|-|.- ++|. ..++++.+|++++.+.-.
T Consensus 57 kq~yhCF~GCGa~GDVf~-Fv~~~~~me~~~lsF~eAve~LA~~aG 101 (373)
T PRK08624 57 NDNFHCYTRCGDIFDVFE-LLCKRLKMEGKALSFSKAIRKITKILG 101 (373)
T ss_pred CCEEEEeCCCCCCCceee-ehhhhhhccccCCCHHHHHHHHHHHhC
Confidence 337899988877766554 4555 667999999999998765
No 336
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=23.22 E-value=2.1e+02 Score=18.17 Aligned_cols=51 Identities=6% Similarity=-0.018 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCC---CCCCCCcceEEEEEeccCCCcc-----HHHHHHHHHHHHHHHHh
Q psy6369 3 GVCHILNVTREI---DNFFPGIFDYCNIRVYDDDKTD-----LLKHWDNTYKYITSAKN 53 (123)
Q Consensus 3 gI~~iin~~~~~---~~~~~~~i~~~~ipi~d~~~~~-----~~~~~~~~~~~i~~~~~ 53 (123)
..+.||.++.+. .+.+|....+.++++.|....+ ..+.|+++.+.|.....
T Consensus 69 ~~D~vitm~~~~~~~~~~~p~~~~~~~w~i~DP~~~~g~~~~~~~~~~~~~~~I~~~v~ 127 (129)
T TIGR02691 69 KADLVVTLCGDARDKCPATPPHVKREHWGLDDPARAEGTEEEKWAVFRRVRDEIKERVK 127 (129)
T ss_pred cCCEEEEeCchhccCCCccCCCCeEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456788887432 1233444556677787753222 24567788888776543
No 337
>PRK05568 flavodoxin; Provisional
Probab=23.14 E-value=2e+02 Score=18.03 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=32.3
Q ss_pred CCCeEEEEeCCCCc-hhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhh
Q psy6369 54 QGSKVLVHCKMGIS-RSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQVGV 116 (123)
Q Consensus 54 ~~~~vlVHC~~G~~-Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l 116 (123)
+++++.+-++.|.+ ..+.-.+.-.+...|+..-.. - .+-...|+..-+++..+|-+.+
T Consensus 81 ~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~--~---~~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 81 KGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNE--G---LIVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred CCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCC--c---EEEecCCCHHHHHHHHHHHHHH
Confidence 67889999988875 222222222334444332221 0 1112357888888888887665
No 338
>PRK03482 phosphoglycerate mutase; Provisional
Probab=23.10 E-value=2.4e+02 Score=19.27 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCch
Q psy6369 34 KTDLLKHWDNTYKYITSAKN--QGSKVLVHCKMGISR 68 (123)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~R 68 (123)
.++..+...++..++++... .+++|+|-+.+|.-|
T Consensus 119 gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~ 155 (215)
T PRK03482 119 GESMQELSDRMHAALESCLELPQGSRPLLVSHGIALG 155 (215)
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHH
Confidence 34566666777777777544 456899977665543
No 339
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=23.04 E-value=2.7e+02 Score=19.38 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=16.4
Q ss_pred CeEEEEeCCCCchhHHHHHH
Q psy6369 56 SKVLVHCKMGISRSASVVIA 75 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~a 75 (123)
.+++||...|.|.|-.+-+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai 54 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAI 54 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 47999999999999765543
No 340
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=23.04 E-value=2.1e+02 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
+.++.+.++.+...|-++.+||..+ +-+
T Consensus 277 i~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 277 ITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 3346677777777889999999765 443
No 341
>smart00644 Ami_2 Ami_2.
Probab=23.01 E-value=1.9e+02 Score=17.86 Aligned_cols=12 Identities=8% Similarity=0.288 Sum_probs=9.1
Q ss_pred CeEEEEeCCCCc
Q psy6369 56 SKVLVHCKMGIS 67 (123)
Q Consensus 56 ~~vlVHC~~G~~ 67 (123)
..|.|||++|-+
T Consensus 4 ~~IviH~t~~~~ 15 (126)
T smart00644 4 RGIVIHHTANSN 15 (126)
T ss_pred CEEEEecCCCCc
Confidence 467888888876
No 342
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=22.90 E-value=1.9e+02 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCC
Q psy6369 39 KHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWD 84 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~ 84 (123)
++++.+.+.++...+.+.+|+|-|.+|.+ ..++..+....|++
T Consensus 156 ~Y~~~l~~~~~~~~~~~~kVvvD~~nG~~---~~~~~~ll~~lg~~ 198 (443)
T PRK14320 156 EYIESIHSRFAKFVNYKGKVVVDCAHGAA---SHNFEALLDKFGIN 198 (443)
T ss_pred HHHHHHHHHHHhhccCCCEEEEECCCchH---HHHHHHHHHHcCCc
Confidence 34445555544222235699999999985 44555566666654
No 343
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.88 E-value=2.5e+02 Score=18.97 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHH
Q psy6369 38 LKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVV 73 (123)
Q Consensus 38 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 73 (123)
.+.+.++.+.+.+.+.++++|++- |.|-|+.++
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~---G~G~S~~~A 53 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLC---GNGGSAADA 53 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHH
Confidence 456777888888888889888765 445555433
No 344
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=22.88 E-value=2.5e+02 Score=20.88 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHH--HcCCCHHHHHHHHHhhC
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMK--AYNWDLTRAMAHVRQKR 96 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~--~~~~~~~~a~~~v~~~r 96 (123)
+.+.+....+.|.+|.+||. |...++..+-.. ....+-.++++.++..+
T Consensus 117 l~~~~~~~~~~g~~v~~H~E----r~~~la~~~g~~l~i~Hiss~~~le~i~~ak 167 (337)
T cd01302 117 LMRTFLEIASRGGPVMVHAE----RAAQLAEEAGANVHIAHVSSGEALELIKFAK 167 (337)
T ss_pred HHHHHHHHHhcCCeEEEeHH----HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHH
Confidence 44445555556889999997 433322221110 01256667777776543
No 345
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=22.84 E-value=1.1e+02 Score=14.64 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=16.2
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHHHH
Q psy6369 64 MGISRSASVVIAYAMKAYNWDLTRAMAHVR 93 (123)
Q Consensus 64 ~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~ 93 (123)
.|+++.-+..+. ...+.+.+.|+.++.
T Consensus 11 mGf~~~~~~~AL---~~~~~d~~~A~~~L~ 37 (38)
T cd00194 11 MGFSREEARKAL---RATNNNVERAVEWLL 37 (38)
T ss_pred cCCCHHHHHHHH---HHhCCCHHHHHHHHh
Confidence 367766444443 233568888887763
No 346
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=22.78 E-value=1e+02 Score=19.63 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=14.4
Q ss_pred eEEEEeCCCCchhHHHH
Q psy6369 57 KVLVHCKMGISRSASVV 73 (123)
Q Consensus 57 ~vlVHC~~G~~Rs~~~~ 73 (123)
+||+-|.+...||+..-
T Consensus 2 ~iLfvc~~N~~RS~mAE 18 (141)
T cd00115 2 KVLFVCTGNICRSPMAE 18 (141)
T ss_pred eEEEEecChhhhhHHHH
Confidence 79999999999996543
No 347
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=22.71 E-value=76 Score=20.17 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.4
Q ss_pred EEEEeCCCCchhHHHHH
Q psy6369 58 VLVHCKMGISRSASVVI 74 (123)
Q Consensus 58 vlVHC~~G~~Rs~~~~~ 74 (123)
||+-|.+..+||+..-+
T Consensus 1 vLFVC~~N~cRSpmAEa 17 (140)
T smart00226 1 ILFVCTGNICRSPMAEA 17 (140)
T ss_pred CEEEeCChhhhHHHHHH
Confidence 68889999999965443
No 348
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=22.68 E-value=2.2e+02 Score=19.09 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=13.5
Q ss_pred CeEEEEeCCCCchhHHHH
Q psy6369 56 SKVLVHCKMGISRSASVV 73 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~ 73 (123)
|-|.|+|..|.|.|.+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~ 20 (159)
T cd00561 3 GLIQVYTGNGKGKTTAAL 20 (159)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 578888989999884433
No 349
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.67 E-value=2.5e+02 Score=18.80 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCC
Q psy6369 43 NTYKYITSAKNQGSKVLVHCKMGI 66 (123)
Q Consensus 43 ~~~~~i~~~~~~~~~vlVHC~~G~ 66 (123)
++++.+.+..+.|.-||.|+..+.
T Consensus 140 ~i~~~~~~~~~~g~Iil~Hd~~~~ 163 (191)
T TIGR02764 140 SIVDRVVKNTKPGDIILLHASDSA 163 (191)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCc
Confidence 344555555667888999994443
No 350
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=22.54 E-value=1.5e+02 Score=21.07 Aligned_cols=49 Identities=8% Similarity=0.195 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhC-CCeEEEEeCCCCchhHHHHHHHHHHHc-----------CCCHHHHHHHHHh
Q psy6369 43 NTYKYITSAKNQ-GSKVLVHCKMGISRSASVVIAYAMKAY-----------NWDLTRAMAHVRQ 94 (123)
Q Consensus 43 ~~~~~i~~~~~~-~~~vlVHC~~G~~Rs~~~~~ayl~~~~-----------~~~~~~a~~~v~~ 94 (123)
.+.++|+.+.+. +.+++|=++.|.. ++++++|+... |+...+.+++++.
T Consensus 27 ~~~e~i~~a~~~~~~~i~vs~SGGKD---S~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~ 87 (241)
T PRK02090 27 SAQERLAWALENFGGRLALVSSFGAE---DAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDE 87 (241)
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHH
Confidence 577888888774 6678898888886 44445555532 3555566666655
No 351
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=22.49 E-value=2.2e+02 Score=22.90 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHH--HcCCCHHHHHHHHHh
Q psy6369 54 QGSKVLVHCKMGISRSASVVIAYAMK--AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~~ayl~~--~~~~~~~~a~~~v~~ 94 (123)
.|+++|+-...|-.|-++.++-.++. .+|+++++|++.=|-
T Consensus 415 ~~~~~l~~Gs~GG~~i~~~~~qvl~~~l~~gm~l~~AI~aPR~ 457 (516)
T TIGR00066 415 DGKPDLVVGSPGGSRIITTVLQTIVRHIDYGMPLAEAVSEPRI 457 (516)
T ss_pred CCceEEEEeCCCchHHHHHHHHHHHHHHHcCCCHHHHHhcCcc
Confidence 46788998888888877777655544 679999999986553
No 352
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=22.40 E-value=4.2e+02 Score=21.40 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=47.7
Q ss_pred EEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHH---------------cCCCHHHHHH
Q psy6369 26 NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKA---------------YNWDLTRAMA 90 (123)
Q Consensus 26 ~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~---------------~~~~~~~a~~ 90 (123)
.+-+.|...--....+.+.++.+.+.. +-++-+||+.-.|=+.+-+++-+..- .+.++++.+.
T Consensus 174 ~i~l~DTvG~~~P~~v~~li~~l~~~~--~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGERaGNa~lE~lv~ 251 (524)
T PRK12344 174 WVVLCDTNGGTLPHEVAEIVAEVRAAP--GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGERCGNANLCSIIP 251 (524)
T ss_pred eEEEccCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHH
Confidence 344666644434444556666666554 46889999987776655554434221 1266777776
Q ss_pred HHHhhCCC-C--CCCHHHHHHHHHHHh
Q psy6369 91 HVRQKRNC-I--KPNANFITQLETYQV 114 (123)
Q Consensus 91 ~v~~~rp~-~--~~~~~~~~~L~~~~~ 114 (123)
.++.+... . ..+...+..+.++-.
T Consensus 252 ~L~~~~g~~~~t~idl~~l~~is~~v~ 278 (524)
T PRK12344 252 NLQLKMGYECLPEEKLKELTEVSRFVS 278 (524)
T ss_pred HHHhccCCCCCCCcCHHHHHHHHHHHH
Confidence 66654331 2 344444444444433
No 353
>PF13017 Maelstrom: piRNA pathway germ-plasm component
Probab=22.12 E-value=1.9e+02 Score=20.27 Aligned_cols=73 Identities=8% Similarity=0.150 Sum_probs=47.5
Q ss_pred eEEEEEecc--CCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcC-------CCHHHHHHHHH
Q psy6369 23 DYCNIRVYD--DDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYN-------WDLTRAMAHVR 93 (123)
Q Consensus 23 ~~~~ipi~d--~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~-------~~~~~a~~~v~ 93 (123)
+-+.||+.. .+..+....+.++++|++.....++...|-|..-.-+-+--++-||...-+ .++++.+-.++
T Consensus 51 ~tH~ip~~~~~~~~~d~~~l~~~l~~fl~~~~~~~~~~~i~~~~~~~~~V~~cl~~La~~a~~~~~~~v~~~~~lf~~l~ 130 (213)
T PF13017_consen 51 ETHQIPIPPNALGESDYSELYNELLNFLKPNKGGEKMPPIFTKRDQIPRVQSCLKWLAKKAGEDNDFKVYDFEYLFFDLK 130 (213)
T ss_pred hhcCCCCCCcccccCCHHHHHHHHHHHhhhcCCCCCcceEEEeHhHHHHHHHHHHHHHHhcCCCcceEeecHHHHHHHHH
Confidence 557788874 356678888999999999986444555566655443344557788877433 34566655555
Q ss_pred hh
Q psy6369 94 QK 95 (123)
Q Consensus 94 ~~ 95 (123)
..
T Consensus 131 ~~ 132 (213)
T PF13017_consen 131 NE 132 (213)
T ss_pred HH
Confidence 54
No 354
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=22.08 E-value=1.3e+02 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=16.2
Q ss_pred CeEEEEeCCCCchhHHHHHHHHHHHcC
Q psy6369 56 SKVLVHCKMGISRSASVVIAYAMKAYN 82 (123)
Q Consensus 56 ~~vlVHC~~G~~Rs~~~~~ayl~~~~~ 82 (123)
+++++-+++|+. +.+++|+|.+.|
T Consensus 178 gk~lvllSGGiD---S~va~~~~~krG 201 (482)
T PRK01269 178 EDVLSLISGGFD---SGVASYMLMRRG 201 (482)
T ss_pred CeEEEEEcCCch---HHHHHHHHHHcC
Confidence 788999999997 333445554444
No 355
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=22.05 E-value=2e+02 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=11.1
Q ss_pred HHHHhCCCeEEEEeCCCCc
Q psy6369 49 TSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 49 ~~~~~~~~~vlVHC~~G~~ 67 (123)
.+.++..++|+|=.++|+.
T Consensus 6 ~~~l~~~~~vlVa~SGGvD 24 (252)
T TIGR00268 6 RNFLKEFKKVLIAYSGGVD 24 (252)
T ss_pred HHHHHhcCCEEEEecCcHH
Confidence 3444445566666666665
No 356
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=21.84 E-value=1.8e+02 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCchh
Q psy6369 41 WDNTYKYITSAKNQGSKVLVHCKMGISRS 69 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 69 (123)
+..+.+.++.+...|-++.+||..+-+++
T Consensus 254 i~~a~~i~~~a~~~gi~~~~g~~~es~i~ 282 (321)
T PRK15129 254 LTEALALATEARAQGFALMLGCMLCTSRA 282 (321)
T ss_pred HHHHHHHHHHHHHcCCcEEEecchHHHHH
Confidence 34566777777888999999998544444
No 357
>PLN02282 phosphoglycerate kinase
Probab=21.82 E-value=1.7e+02 Score=22.89 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=29.6
Q ss_pred EEEeccCC-CccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Q psy6369 26 NIRVYDDD-KTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGIS 67 (123)
Q Consensus 26 ~ipi~d~~-~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 67 (123)
++|+.|.+ ..+ ...+..++.-|+...++|.+|.+-.+.|.-
T Consensus 27 NvPi~~~g~I~d-d~RI~a~lpTI~~l~~~gakvVl~SHlGRP 68 (401)
T PLN02282 27 NVPLDDNSNITD-DTRIRAAVPTIKYLMGHGARVILCSHLGRP 68 (401)
T ss_pred CCccCCCCcccC-cHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45664422 222 345888999999999999999998888865
No 358
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=21.76 E-value=2.3e+02 Score=23.59 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCCCchhHHHH--HHHHHHHcCCCHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVV--IAYAMKAYNWDLTR 87 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~--~ayl~~~~~~~~~~ 87 (123)
..|+++|-=.+|-|.|.+++ ++||+...|.++++
T Consensus 14 ~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~ 49 (672)
T PRK10919 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARH 49 (672)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHH
Confidence 45799999999999998877 58888766766643
No 359
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=21.73 E-value=1.7e+02 Score=19.25 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=20.3
Q ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHH
Q psy6369 63 KMGISRSASVVIAYAMKAYNWDLTRAMA 90 (123)
Q Consensus 63 ~~G~~Rs~~~~~ayl~~~~~~~~~~a~~ 90 (123)
..|.||+.+.+++.+......+.++|-+
T Consensus 28 ~~~lG~~ev~vaa~~ygqa~~~~~ear~ 55 (151)
T COG1513 28 ADGLGLAEVFVAAALYGQAALPADEARA 55 (151)
T ss_pred HhhcCccHHHHHHHHHhhccCCHHHHHH
Confidence 5688999988888776666666666543
No 360
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=21.72 E-value=2e+02 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCCCchhHHHH--HHHHHHHcCCCHHH
Q psy6369 54 QGSKVLVHCKMGISRSASVV--IAYAMKAYNWDLTR 87 (123)
Q Consensus 54 ~~~~vlVHC~~G~~Rs~~~~--~ayl~~~~~~~~~~ 87 (123)
..++++|-=.+|-|.|.+++ ++||+...+.++.+
T Consensus 16 ~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~ 51 (715)
T TIGR01075 16 PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHS 51 (715)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHH
Confidence 45799999999999998887 58888766766544
No 361
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=21.71 E-value=2e+02 Score=19.70 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCeEEEEeCC--CCchhHHHHHHHHHHHc
Q psy6369 46 KYITSAKNQGSKVLVHCKM--GISRSASVVIAYAMKAY 81 (123)
Q Consensus 46 ~~i~~~~~~~~~vlVHC~~--G~~Rs~~~~~ayl~~~~ 81 (123)
+.++...+.|+.|+||-.. |.++- -.++-||....
T Consensus 35 ~~v~~~~~~gK~vfVHiDli~Gl~~D-~~~i~~L~~~~ 71 (175)
T PF04309_consen 35 DIVKRLKAAGKKVFVHIDLIEGLSRD-EAGIEYLKEYG 71 (175)
T ss_dssp HHHHHHHHTT-EEEEECCGEETB-SS-HHHHHHHHHTT
T ss_pred HHHHHHHHcCCEEEEEehhcCCCCCC-HHHHHHHHHcC
Confidence 4566666789999999864 88777 55666676543
No 362
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=21.71 E-value=3.3e+02 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCeEEEEeCCCCchhHHHHHHHHHHHcCC
Q psy6369 55 GSKVLVHCKMGISRSASVVIAYAMKAYNW 83 (123)
Q Consensus 55 ~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~ 83 (123)
+++|+|-|..|.|=.=.+++|-.+...|+
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~ 163 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGY 163 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCC
Confidence 36899999999988755555444444554
No 363
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.69 E-value=2e+02 Score=20.98 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy6369 37 LLKHWDNTYKYITSAKNQGSKVLVHCKM 64 (123)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 64 (123)
....+..++.|+.....+|+.||+-++.
T Consensus 46 T~~~L~~A~~~i~~~~~~~g~iLfVgTk 73 (258)
T PRK05299 46 TVPMLDEAYNFVRDVAANGGKILFVGTK 73 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 4456889999999998899999988865
No 364
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=21.68 E-value=2.1e+02 Score=17.55 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHhhhccc
Q psy6369 88 AMAHVRQKRNCIKPNANFITQLETYQVGVQPS 119 (123)
Q Consensus 88 a~~~v~~~rp~~~~~~~~~~~L~~~~~~l~~~ 119 (123)
=-++|..++....|...+.+....|-+..+.+
T Consensus 48 E~~Fv~v~~g~~~p~s~~Ek~W~KY~~~i~~~ 79 (93)
T PF04219_consen 48 EKQFVAVCRGEREPESPFEKVWLKYLKRIRRP 79 (93)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCC
Confidence 35688888888888888988888888776544
No 365
>PHA03141 helicase-primase primase subunit; Provisional
Probab=21.59 E-value=2.2e+02 Score=17.74 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhC-CCCCCCHHHHHHHHHHHhhhc
Q psy6369 85 LTRAMAHVRQKR-NCIKPNANFITQLETYQVGVQ 117 (123)
Q Consensus 85 ~~~a~~~v~~~r-p~~~~~~~~~~~L~~~~~~l~ 117 (123)
++++++.+...- +....+.....+|+.|.+.|.
T Consensus 66 l~~~L~~~~~v~g~~~~~~~~~~~~le~~~~iL~ 99 (101)
T PHA03141 66 LHEALSVFSKVGGEAGTINKETDHKLEGFKKILC 99 (101)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHh
Confidence 566777777763 356777788889999998764
No 366
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=21.54 E-value=1.6e+02 Score=21.35 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=13.3
Q ss_pred HcCCCHHHHHHHHHhhCC
Q psy6369 80 AYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 80 ~~~~~~~~a~~~v~~~rp 97 (123)
..|++++++++.++..+.
T Consensus 133 ~~G~s~~eI~~~l~~~~~ 150 (275)
T TIGR00762 133 EEGKSLEEILAKLEELRE 150 (275)
T ss_pred HcCCCHHHHHHHHHHHHh
Confidence 346788888888877664
No 367
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=21.53 E-value=1.4e+02 Score=21.67 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHH------HHHcCCCHHHHHHHHHh
Q psy6369 43 NTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYA------MKAYNWDLTRAMAHVRQ 94 (123)
Q Consensus 43 ~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl------~~~~~~~~~~a~~~v~~ 94 (123)
-...+++-+.+.+.+|.|||.......-.+.-.+. +..+.-+.+.|-+++..
T Consensus 113 ~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 113 VFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred HHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHc
Confidence 34456666777788999998776655544333221 11223466777666644
No 368
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=21.50 E-value=3.8e+02 Score=20.54 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=34.6
Q ss_pred CCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcC
Q psy6369 33 DKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYN 82 (123)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~ 82 (123)
+.-++.++++-++++|+-.-. +-.|.--|+-++ +.+++.-||...+
T Consensus 149 G~FdldDYIdyvie~~~~~Gp-~~hv~aVCQP~v---PvLAAisLM~~~~ 194 (415)
T COG4553 149 GHFDLDDYIDYVIEMINFLGP-DAHVMAVCQPTV---PVLAAISLMEEDG 194 (415)
T ss_pred CCccHHHHHHHHHHHHHHhCC-CCcEEEEecCCc---hHHHHHHHHHhcC
Confidence 456677888888888876543 468888899888 6888888888654
No 369
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=21.44 E-value=1.6e+02 Score=16.99 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy6369 35 TDLLKHWDNTYKYITSAKNQGSKVLVH 61 (123)
Q Consensus 35 ~~~~~~~~~~~~~i~~~~~~~~~vlVH 61 (123)
.+....++.+.+.|.+.+.+|+.|-++
T Consensus 19 ~~v~~vl~~~~~~i~~~L~~g~~V~l~ 45 (90)
T PF00216_consen 19 KDVEAVLDALFDVIKEALKEGESVKLP 45 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEee
Confidence 345566888999999999999888664
No 370
>PRK08939 primosomal protein DnaI; Reviewed
Probab=21.37 E-value=3.5e+02 Score=20.07 Aligned_cols=36 Identities=6% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHh--CCCeEEEEeCCCCchhHHHHH
Q psy6369 39 KHWDNTYKYITSAKN--QGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
.....+.+|+++... .+.+++++=..|.|-|-.+++
T Consensus 138 ~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 138 DALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 345567788876653 457899999999999955443
No 371
>KOG1838|consensus
Probab=21.33 E-value=67 Score=25.13 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCC
Q psy6369 44 TYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCI 99 (123)
Q Consensus 44 ~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~ 99 (123)
+.-++.++.++|-++.|-=..|.+++....=...-.-.-.++.++++++++++|.+
T Consensus 143 Vr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a 198 (409)
T KOG1838|consen 143 VRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQA 198 (409)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCC
Confidence 44577778888888888878888877543221111111257899999999999965
No 372
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=21.33 E-value=1.5e+02 Score=16.62 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=18.1
Q ss_pred HHcCCCHHHHHHHHHhhCC-CCCCCHHH
Q psy6369 79 KAYNWDLTRAMAHVRQKRN-CIKPNANF 105 (123)
Q Consensus 79 ~~~~~~~~~a~~~v~~~rp-~~~~~~~~ 105 (123)
...+|+++.|++-+..... +..|...|
T Consensus 35 e~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 35 EDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4568999999998888443 24444433
No 373
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.32 E-value=2.8e+02 Score=18.89 Aligned_cols=47 Identities=6% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCCccHHHHHHHHHHHHHHHH----h-CCCeEEEEe--CCCCchhHHHH-HHHHH
Q psy6369 32 DDKTDLLKHWDNTYKYITSAK----N-QGSKVLVHC--KMGISRSASVV-IAYAM 78 (123)
Q Consensus 32 ~~~~~~~~~~~~~~~~i~~~~----~-~~~~vlVHC--~~G~~Rs~~~~-~ayl~ 78 (123)
.+.....+.|.++...+.... . ..++++.-+ .+|.|.|...+ +|+.+
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~l 60 (207)
T TIGR03018 6 SPRSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISL 60 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHH
Confidence 333445555666666555322 1 123444333 67999996433 55543
No 374
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=21.29 E-value=1.4e+02 Score=19.95 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=16.0
Q ss_pred HHHHHHHHHH--HcCCCHHHHHHHHHh
Q psy6369 70 ASVVIAYAMK--AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 70 ~~~~~ayl~~--~~~~~~~~a~~~v~~ 94 (123)
...+..+|=. +.+++.++|++.++.
T Consensus 133 ~~~~~~~Le~~~~~~~s~~ea~~l~~~ 159 (185)
T TIGR03634 133 SPVAYGVLEDEYREDMSVEEAKKLAVR 159 (185)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 3444555544 345899999888765
No 375
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=21.26 E-value=1.7e+02 Score=17.95 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 75 AYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 75 ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
..+|...|.++++.++.++.++.
T Consensus 67 lVlL~~~gv~l~dV~~eL~~R~~ 89 (92)
T COG0140 67 LVLLAAQGLSLEDVLRELERRHG 89 (92)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhh
Confidence 34567889999999999998764
No 376
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.15 E-value=1.5e+02 Score=22.42 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhCC-CeEEEEeCCCC
Q psy6369 39 KHWDNTYKYITSAKNQG-SKVLVHCKMGI 66 (123)
Q Consensus 39 ~~~~~~~~~i~~~~~~~-~~vlVHC~~G~ 66 (123)
+.+..+++++...-... .-+|.||..++
T Consensus 146 ~Ei~~Av~~i~~~G~~~~~i~llhC~s~Y 174 (329)
T TIGR03569 146 EEIEAAVGVLRDAGTPDSNITLLHCTTEY 174 (329)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEEECCCC
Confidence 44777777776432211 36788998764
No 377
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=21.09 E-value=1.8e+02 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=22.7
Q ss_pred HHHHHhCCCeEEEEeCCCCchhHHHHHHHHHHHcC
Q psy6369 48 ITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYN 82 (123)
Q Consensus 48 i~~~~~~~~~vlVHC~~G~~Rs~~~~~ayl~~~~~ 82 (123)
++....++.+|+|-|..|.+ ..++-.+....|
T Consensus 180 ~~~~~~~~~kVvvD~aNGag---~~~~~~ll~~Lg 211 (513)
T cd03086 180 LQDGGDEPEKLVVDCANGVG---ALKLKELLKRLK 211 (513)
T ss_pred ccccccCCCEEEEECCCcHH---HHHHHHHHHHcC
Confidence 33333467899999999995 666666667666
No 378
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=21.06 E-value=1.6e+02 Score=18.15 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhh
Q psy6369 85 LTRAMAHVRQKRNCIKPNANFITQLETYQVGV 116 (123)
Q Consensus 85 ~~~a~~~v~~~rp~~~~~~~~~~~L~~~~~~l 116 (123)
+..++.++|.-.|...|...+.-.|-.+.++|
T Consensus 5 l~~iv~WLRaGYP~GvP~~Dy~PLlALL~r~L 36 (96)
T PF11829_consen 5 LASIVDWLRAGYPEGVPPTDYVPLLALLRRRL 36 (96)
T ss_dssp HHHHHHHHHHH-TT-B-HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHccCCCCCCCCccHHHHHHhcccC
Confidence 45667777777777777777777666555544
No 379
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=20.89 E-value=3.1e+02 Score=19.95 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHHHHHHHHHH---H-hCCCeEEEEeCCCCchhHHHHHHHHHH
Q psy6369 41 WDNTYKYITSA---K-NQGSKVLVHCKMGISRSASVVIAYAMK 79 (123)
Q Consensus 41 ~~~~~~~i~~~---~-~~~~~vlVHC~~G~~Rs~~~~~ayl~~ 79 (123)
|+++++.|-+. + ..+|..|.-=.+|.||...+-+|-.|.
T Consensus 13 f~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 13 FDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFIC 55 (268)
T ss_dssp -HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHh
Confidence 44455544333 2 356788888899999998777655544
No 380
>PHA02593 62 clamp loader small subunit; Provisional
Probab=20.83 E-value=1.7e+02 Score=20.45 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhCC
Q psy6369 71 SVVIAYAMKAYNWDLTRAMAHVRQKRN 97 (123)
Q Consensus 71 ~~~~ayl~~~~~~~~~~a~~~v~~~rp 97 (123)
.+.+..++..++.+.++|.++++-.-.
T Consensus 125 ~~~i~ll~~~Y~vn~~kA~eyl~iltk 151 (191)
T PHA02593 125 KLIIKLLAKAYSVNTDDAREYLDILKK 151 (191)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcc
Confidence 667788899999999999999887544
No 381
>KOG3020|consensus
Probab=20.82 E-value=1.2e+02 Score=22.72 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEeCCCC
Q psy6369 41 WDNTYKYITSAKNQGS-KVLVHCKMGI 66 (123)
Q Consensus 41 ~~~~~~~i~~~~~~~~-~vlVHC~~G~ 66 (123)
..++++.+.+....-. +|.|||..|-
T Consensus 159 ~~d~~eIl~~~~~~~~~~vvvHsFtGs 185 (296)
T KOG3020|consen 159 HEDLLEILKRFLPECHKKVVVHSFTGS 185 (296)
T ss_pred hHHHHHHHHHhccccCCceEEEeccCC
Confidence 3445555555544333 8999999997
No 382
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.73 E-value=3.8e+02 Score=20.22 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=31.1
Q ss_pred EEEeccCCCccHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHH
Q psy6369 26 NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVI 74 (123)
Q Consensus 26 ~ipi~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 74 (123)
.+-+.|+...-..+.+.+.+..+++....+-++-+||+.-.|=+.+=++
T Consensus 160 ~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANsl 208 (337)
T PRK08195 160 CVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSL 208 (337)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHH
Confidence 4566777555555556666677766654457899999876655444333
No 383
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=20.70 E-value=2.4e+02 Score=17.98 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhC---CCeEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy6369 43 NTYKYITSAKNQ---GSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLE 110 (123)
Q Consensus 43 ~~~~~i~~~~~~---~~~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~ 110 (123)
++++-+.+.... ++.++++-..|.|-|.+++.+ ...... .--.+.|+....+|+.
T Consensus 10 ~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~-~~~l~~------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 10 EAIARIINSLENKKEERRVLLNAPTGSGKTIIALAL-ILELAR------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp HHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHH-HHHHHC------------EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhh-hhcccc------------ceeEecCHHHHHHHHH
Confidence 355555555443 489999999999999776632 111111 1114677877777765
No 384
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=20.62 E-value=2.3e+02 Score=19.53 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=14.0
Q ss_pred HHHHHHhCCCeEEEEeCCC
Q psy6369 47 YITSAKNQGSKVLVHCKMG 65 (123)
Q Consensus 47 ~i~~~~~~~~~vlVHC~~G 65 (123)
+++.+.+.|.+|.+||...
T Consensus 113 ~~~~a~~~~~pv~iH~~~~ 131 (252)
T TIGR00010 113 QLQLAEELNLPVIIHARDA 131 (252)
T ss_pred HHHHHHHhCCCeEEEecCc
Confidence 3555566789999999753
No 385
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.34 E-value=1.7e+02 Score=20.10 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=19.4
Q ss_pred eCCCCchhHHHHHHHHHHH--cCCCHHHHHHHHHh
Q psy6369 62 CKMGISRSASVVIAYAMKA--YNWDLTRAMAHVRQ 94 (123)
Q Consensus 62 C~~G~~Rs~~~~~ayl~~~--~~~~~~~a~~~v~~ 94 (123)
|..|.+ ...+..+|=.. .+|+.+||++.+..
T Consensus 157 ~a~G~g--s~~~~~~Le~~~~~~ms~eeai~l~~~ 189 (207)
T cd03755 157 NAIGRN--SKTVREFLEKNYKEEMTRDDTIKLAIK 189 (207)
T ss_pred EEECCC--CHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 344443 44555555443 35899999998766
No 386
>PRK03996 proteasome subunit alpha; Provisional
Probab=20.27 E-value=1.7e+02 Score=20.63 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=18.9
Q ss_pred eCCCCchhHHHHHHHHHH--HcCCCHHHHHHHHHh
Q psy6369 62 CKMGISRSASVVIAYAMK--AYNWDLTRAMAHVRQ 94 (123)
Q Consensus 62 C~~G~~Rs~~~~~ayl~~--~~~~~~~~a~~~v~~ 94 (123)
|..|.+.. .+-.+|=. +.+++.++|++.+..
T Consensus 165 ~a~G~g~~--~~~~~Le~~~~~~~s~eeai~l~~~ 197 (241)
T PRK03996 165 TAIGAGRD--TVMEFLEKNYKEDLSLEEAIELALK 197 (241)
T ss_pred EEECCCcH--HHHHHHHHhcccCCCHHHHHHHHHH
Confidence 44455443 44444544 346999999888765
No 387
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=20.26 E-value=1.3e+02 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhh
Q psy6369 72 VVIAYAMKAYNWDLTRAMAHVRQK 95 (123)
Q Consensus 72 ~~~ayl~~~~~~~~~~a~~~v~~~ 95 (123)
+++-.-+...|||.++|++++...
T Consensus 451 ~vvD~glH~~~wt~e~a~~~l~~~ 474 (549)
T PF05960_consen 451 LVVDTGLHYGGWTREQAIDYLVEN 474 (549)
T ss_dssp HHHHHHHHCCB--HHHHHHHHHHH
T ss_pred HHHHHhhhcCCCCHHHHHHHHHHh
Confidence 333333444567777777776663
No 388
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=20.24 E-value=3e+02 Score=19.96 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCC--eEEEEeCCCCchhHHH
Q psy6369 43 NTYKYITSAKNQGS--KVLVHCKMGISRSASV 72 (123)
Q Consensus 43 ~~~~~i~~~~~~~~--~vlVHC~~G~~Rs~~~ 72 (123)
.+.+.+.+....+. .+++|=..|.|.|.++
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 35556666666665 7999999999999554
No 389
>PF12643 MazG-like: MazG-like family
Probab=20.20 E-value=2.3e+02 Score=17.43 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=12.6
Q ss_pred hHHHHHHHHHH-HcCCCHHH
Q psy6369 69 SASVVIAYAMK-AYNWDLTR 87 (123)
Q Consensus 69 s~~~~~ayl~~-~~~~~~~~ 87 (123)
+..++.+|+|. +.|.++.+
T Consensus 42 Advii~~ylLa~rLGid~~~ 61 (98)
T PF12643_consen 42 ADVIIYCYLLADRLGIDFRE 61 (98)
T ss_pred HHHHHHHHHHHHHhCCCHHH
Confidence 45667777765 67899433
No 390
>PRK15023 L-serine deaminase; Provisional
Probab=20.18 E-value=1.4e+02 Score=23.78 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=27.5
Q ss_pred EEeCCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q psy6369 60 VHCKMGISRSASVVIAYAMKAYNWDLTRAMAH 91 (123)
Q Consensus 60 VHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~ 91 (123)
+=|++-+|-+++|+++-+....|-+++++..-
T Consensus 337 gGCQaEvGsA~AMAAAal~~~~Ggt~~qi~~A 368 (454)
T PRK15023 337 VGCQGEVGVACSMAAAGLAELLGGSPEQVCVA 368 (454)
T ss_pred ccchhhhCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34999999999999999999999999886543
No 391
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.16 E-value=1.7e+02 Score=15.87 Aligned_cols=30 Identities=7% Similarity=0.143 Sum_probs=20.9
Q ss_pred CchhHHHHHHHHHHHcC--CCHHHHHHHHHhh
Q psy6369 66 ISRSASVVIAYAMKAYN--WDLTRAMAHVRQK 95 (123)
Q Consensus 66 ~~Rs~~~~~ayl~~~~~--~~~~~a~~~v~~~ 95 (123)
..++...+.+|+...+| ++......++++.
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~ 34 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRL 34 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHc
Confidence 34666777777777777 6677777777764
No 392
>KOG2036|consensus
Probab=20.04 E-value=2e+02 Score=24.71 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCC--eEEEEeCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy6369 40 HWDNTYKYITSAKNQGS--KVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETY 112 (123)
Q Consensus 40 ~~~~~~~~i~~~~~~~~--~vlVHC~~G~~Rs~~~~~ayl~~~~~~~~~~a~~~v~~~rp~~~~~~~~~~~L~~~ 112 (123)
.-+.+..|++....+.- .|-+--..|.|.|+++.++ ...|+.+-=.-=....|++.-++.|-+|
T Consensus 258 Qakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGls---------iA~AVa~GysnIyvtSPspeNlkTlFeF 323 (1011)
T KOG2036|consen 258 QAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLS---------IAGAVAFGYSNIYVTSPSPENLKTLFEF 323 (1011)
T ss_pred HHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHH---------HHHHHhcCcceEEEcCCChHHHHHHHHH
Confidence 34556677777666543 4444445555666665443 3344443322223455666666655444
No 393
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=20.02 E-value=1.9e+02 Score=17.11 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHh
Q psy6369 71 SVVIAYAMKAYN-WDLTRAMAHVRQ 94 (123)
Q Consensus 71 ~~~~ayl~~~~~-~~~~~a~~~v~~ 94 (123)
.-++.|||.... .+.++|......
T Consensus 32 ~~~v~WL~~~~~~~~~~EA~~~~~~ 56 (88)
T cd04450 32 KAIVQWLMDCTDVVDPSEALEIAAL 56 (88)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 345667776554 667777665544
Done!