RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6369
(123 letters)
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 173 bits (439), Expect = 3e-56
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
+ +LNV+R Y I V D D+ H+ +I + +G KVLVH
Sbjct: 31 HITALLNVSRRTSEACMTHLHYKWIPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHS 90
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
+ GISRS ++ +AY MK + L A +++Q+R+ + PN F+ QL Y+
Sbjct: 91 EAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMVSPNFGFMGQLLQYE 141
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 168 bits (429), Expect = 1e-55
Identities = 72/111 (64%), Positives = 90/111 (81%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
GV +ILNVTREIDNFFPG+F+Y NIRVYD++ TDLL +W++TYK+I+ AK GSK LVH
Sbjct: 29 GVRYILNVTREIDNFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHS 88
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
KMG+SRSAS VIAYAMK Y W+L RA +V+++R KPN +F+ QLE YQ
Sbjct: 89 KMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQ 139
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 168 bits (428), Expect = 3e-55
Identities = 38/111 (34%), Positives = 54/111 (48%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
G+ +NV+R+ + V+DD DLL H + T + +A G LV+C
Sbjct: 37 GITLCVNVSRQQPGPRAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYC 96
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
K G SRSA+V AY M+ L RA V+ R +PN F QL+ Y+
Sbjct: 97 KNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARPVAEPNLGFWAQLQKYE 147
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 167 bits (425), Expect = 5e-55
Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
G+ +LNV+ + N F G + Y I V D+ K D+ + +YI + K+ +VLVH
Sbjct: 29 GITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHS 88
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
+ GISRSA++ +AY M L A V+Q+R+ I PN +F+ QL ++
Sbjct: 89 QAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQLLQFE 139
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 166 bits (424), Expect = 9e-55
Identities = 41/111 (36%), Positives = 64/111 (57%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
V HILNV ++N F F Y +I + D +T++L ++ +++I AK + VLVH
Sbjct: 29 KVTHILNVAYGVENAFLSDFTYKSISILDLPETNILSYFPECFEFIEEAKRKDGVVLVHS 88
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
G+SR+A++VI + M + T A + V+ R I PN+ F+ QL TYQ
Sbjct: 89 NAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPNSGFMEQLRTYQ 139
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 167 bits (426), Expect = 1e-54
Identities = 40/111 (36%), Positives = 57/111 (51%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
G+ I+N T EI NF F+Y + + D + ++D I S + LVHC
Sbjct: 51 GITCIVNATIEIPNFNWPQFEYVKVPLADMPHAPIGLYFDTVADKIHSVSRKHGATLVHC 110
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
G+SRSA++ IAY MK +N L A V+ +R I+PN F QL Y+
Sbjct: 111 AAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRPVIRPNVGFWRQLIDYE 161
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 165 bits (421), Expect = 7e-54
Identities = 33/111 (29%), Positives = 55/111 (49%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
+ ++NV+ E+ N Y + V D + L +D +I S + + + L+HC
Sbjct: 45 QITMVINVSVEVVNTLYEDIQYMQVPVADSPNSRLCDFFDPIADHIHSVEMKQGRTLLHC 104
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
G+SRSA++ +AY MK + L A + R I+PN+ F QL Y+
Sbjct: 105 AAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPIIRPNSGFWEQLIHYE 155
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 164 bits (418), Expect = 1e-53
Identities = 24/111 (21%), Positives = 47/111 (42%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
+ IL V E+ + F D + + ++ L N K+I + + VL+
Sbjct: 35 NISSILLVGIEVPSLFKDQCDILRLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIIS 94
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
G++++ ++VIA+ M A V+ I + FI QL+ ++
Sbjct: 95 GTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYPLIDIESGFILQLKLFE 145
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 163 bits (416), Expect = 2e-53
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
V HIL+V G Y I D +L +H+ + K+I + +G LVHC
Sbjct: 32 KVTHILSVHDSARPMLEG-VKYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHC 90
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
G+SRS ++VIAY M ++ A+ VR R+C PN F QL+ ++
Sbjct: 91 LAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCANPNVGFQRQLQEFE 141
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 163 bits (415), Expect = 4e-53
Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 3 GVCHILNVTREIDNFF--PGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLV 60
+ +++NVT + + G+F+Y + D +K +L ++++ +++I A G +L+
Sbjct: 33 NIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFEEAFEFIEEAHQCGKGLLI 92
Query: 61 HCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
HC+ G+SRSA++VIAY MK +T A V+ KR I PN NF+ QL ++
Sbjct: 93 HCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQLLEFE 145
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 162 bits (413), Expect = 6e-53
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
+ HI+++ Y I V D + + KH+ +I + G LVH
Sbjct: 33 KITHIISIHESPQPLLQD-ITYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHS 91
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
GISRS ++V AY M + ++ R PN F QLE +
Sbjct: 92 FAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQLEEFG 142
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 161 bits (410), Expect = 1e-52
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 3 GVCHILNVTREIDNFFP--GIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLV 60
G+ +ILNVT + NFF G F Y I + D +L + + ++I A +Q VLV
Sbjct: 31 GIRYILNVTPNLPNFFEKNGDFHYKQIPISDHWSQNLSRFFPEAIEFIDEALSQNCGVLV 90
Query: 61 HCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
H G+SRS +V +AY M+ + L A V++K++ I PN NF+ QL ++
Sbjct: 91 HSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSNISPNFNFMGQLLDFE 143
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 161 bits (409), Expect = 2e-52
Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 3 GVCHILNVTREIDNFF--PGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLV 60
+ +++NVT + + G+F+Y + D +K +L ++++ +++I A G +L+
Sbjct: 29 NIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFEEAFEFIEEAHQCGKGLLI 88
Query: 61 HCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
HC+ G+SRSA++VIAY MK +T A V+ KR I PN NF+ QL ++
Sbjct: 89 HCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQLLEFE 141
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 160 bits (407), Expect = 3e-52
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 GVCHILNVTREIDN-----FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSK 57
G+ HI+ + + I+ F +F Y + + D+ ++++ + T ++I + G K
Sbjct: 33 GITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGGK 92
Query: 58 VLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
VLVH GISRSA+ VIAY M+ + A A+V+++R CI PNA F+ QL+ Y+
Sbjct: 93 VLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRFCINPNAGFVHQLQEYE 148
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 156 bits (397), Expect = 4e-50
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
++LN+T + + +I + DD TD+ K++D+ +++ + VLVHC
Sbjct: 73 KFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHC 132
Query: 63 KMGISRSASVVIAYAMKAYNWDLTR-----AMAHVRQKRNCIKPNANFITQL 109
G++RS ++++AY M L +R R N +F Q+
Sbjct: 133 AAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRGAFVENPSFKRQI 184
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 156 bits (395), Expect = 6e-50
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
++LN+T + + +I + DD TD+ K++D+ +++ + VLVH
Sbjct: 56 KFKYVLNLTMDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHS 115
Query: 63 KMGISRSASVVIAYAMKAYNWDLTR-----AMAHVRQKRNCIKPNANFITQLETYQV 114
G++RS ++++AY M L +R R N +F Q+ V
Sbjct: 116 AAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRGAFVENPSFKRQIIEKYV 172
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 152 bits (387), Expect = 2e-48
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 3 GVCHILNVTREIDN-------FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSA-KNQ 54
G H+LN N + Y + D DL + +I A +
Sbjct: 79 GFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGVEADDLPTFDLSVFFYPAAAFIDRALSDD 138
Query: 55 GSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
SK+LVHC MG SRSA++V+AY M + L A+ V + R C+ PN F+ QL
Sbjct: 139 HSKILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNR-CVLPNRGFLKQLRELD 196
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 149 bits (379), Expect = 1e-47
Identities = 25/111 (22%), Positives = 52/111 (46%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHC 62
++NV E ++ + + + + + I +A + K+L+H
Sbjct: 65 PFDVVINVAEEANDLRMQVPAVEYHHYRWEHDSQIALDLPSLTSIIHAATTKREKILIHA 124
Query: 63 KMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
+ G+SRSA+++IAY MK +N L + ++ + + I P+ I QL ++
Sbjct: 125 QCGLSRSATLIIAYIMKYHNLSLRHSYDLLKSRADKINPSIGLIFQLMEWE 175
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 147 bits (374), Expect = 3e-47
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 3 GVCHILNVTREIDNFFPGI-----FDYCNIRVYDDDKTDLLKHWDNTYKYITSA-KNQGS 56
G+ H+LN + P Y + +D D+ H+ +I A G
Sbjct: 27 GITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGG 86
Query: 57 KVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
K+LVHC +G+SRSA++V+AY M ++ L A+ V+ R I PN F+ QL
Sbjct: 87 KILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGII-PNRGFLRQLLALD 142
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 149 bits (378), Expect = 5e-47
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 3 GVCHILNVTREIDN-------FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSA-KNQ 54
G+ H++N + +Y I D+ DL ++ +YI +A
Sbjct: 71 GITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAALSVP 130
Query: 55 GSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
+VLVHC MG+SRSA++V+A+ M N L A+ V+ R I PN+ F+ QL+
Sbjct: 131 QGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHR-NICPNSGFLRQLQVLD 188
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 148 bits (375), Expect = 7e-47
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 3 GVCHILNVTREIDN---------FFPGIFDYCNIRVYDDDKTDLLKHWDNTYKYITSA-K 52
G+ H+LN + Y I+ D + +L +++ +I A
Sbjct: 53 GITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALA 112
Query: 53 NQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETY 112
+ +VLVHC+ G SRS ++VIAY M D+ A++ VRQ R I PN F+ QL
Sbjct: 113 QKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNR-EIGPNDGFLAQLCQL 171
Query: 113 Q 113
Sbjct: 172 N 172
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 142 bits (360), Expect = 5e-45
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 3 GVCHILNVTREIDNFFPGI---------FDYCNIRVYDDDKTDLLKHWDNTYKYITSAKN 53
V ++ + E + F + + D L + ++ +
Sbjct: 28 NVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQA 87
Query: 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
G V VHCK G SRSA++V AY ++ +NW A+ + + R+ I + + L+ +
Sbjct: 88 LGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFH 147
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 97.5 bits (242), Expect = 6e-26
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 15/126 (11%)
Query: 3 GVCHILNVTREIDNFFPGI--------------FDYCNIRVYDDDKTDLLKHWDNTYKYI 48
GV I + ++ D + G+ + + D D DL +
Sbjct: 39 GVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRMRLPAVVGTL 98
Query: 49 TSA-KNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFIT 107
A K G VH G+ R+ +V + Y + L A + KR+C
Sbjct: 99 YKAVKRNGGVTYVHSTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRN 158
Query: 108 QLETYQ 113
Sbjct: 159 ATIDIL 164
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 70.1 bits (172), Expect = 1e-16
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 3 GVCHILNVT--REIDNFFPGIFDYCNIRVYDDD--KTDLLKHWDNTYKYITSAKNQGSKV 58
GV H++++T + +R+ D D + + + + A +G V
Sbjct: 36 GVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRF---VQIVDEANARGEAV 92
Query: 59 LVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETY 112
VHC +G R+ +++ Y +K A+A +R+ R + +
Sbjct: 93 GVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQF 146
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 64.3 bits (156), Expect = 1e-13
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYDDDKTDLLK-HWDNTYKYITSAKNQGSKVLVH 61
V I+ + + + F +D D +++ +N + VH
Sbjct: 218 NVTTIIRLNKR--MYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVH 275
Query: 62 CKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRN--CIKPNANFITQLE 110
K G+ R+ +++ Y MK Y +A VR R I P F+ +
Sbjct: 276 SKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLVMKQ 326
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 60.1 bits (145), Expect = 3e-12
Identities = 16/118 (13%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 3 GVCHILNVTREI-----DNFFPGIFDYCNIRVYDDD---KTDLLKHWDNTYKYITSAKNQ 54
+ ++++T ++ Y ++ T+ + + + +N
Sbjct: 82 KMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNE-RNP 140
Query: 55 GSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQLETY 112
+ VHC G +R+ ++ A+ ++ +W + A+A Q R +++ +L
Sbjct: 141 PELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRR 198
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 56.5 bits (136), Expect = 3e-11
Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 16/122 (13%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYD---DDKT----DLLKHW-----DNTYKYITS 50
GV H++ V + + I V+ DD +L W +
Sbjct: 47 GVRHLVRVCGP--TYDATLVKSRGIDVHSWPFDDGAPPTRAVLDSWLKLLDTELARQQED 104
Query: 51 AKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNC--IKPNANFITQ 108
+ VHC G+ R+ +V ++ N A+A +R+KR + ++IT+
Sbjct: 105 PSVPPPTIGVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRKGAINQTQMHWITK 164
Query: 109 LE 110
+
Sbjct: 165 YK 166
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 55.2 bits (133), Expect = 6e-11
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 3 GVCHILNVTRE--------IDNFFPGIFDYCNIRVYD----DDKTDLLKHWDNTYKYITS 50
GV +L + + +++ I ++ D + K++
Sbjct: 28 GVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDGGVPSDSQFLTIMKWLL- 86
Query: 51 AKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNC 98
++ LVHC GI R+ +++ +Y + ++ A+ VR R
Sbjct: 87 --SEKEGNLVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPG 132
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 53.5 bits (128), Expect = 7e-10
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 3 GVCHILNVT--REIDNF----FPGIFDYCNIRVYD----DDKTDLLKHWDNTYKYITSAK 52
G+ I E+ + ++ C I + D T + + +T+
Sbjct: 71 GIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCL 130
Query: 53 NQGSKVLVHCKMGISRSASVVIAYAMKA-YNWDLTRAMAHVRQKR 96
K L+H G+ RS V + +A+ +R R
Sbjct: 131 KNYRKTLIHSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLR 175
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 51.5 bits (123), Expect = 2e-09
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYD---DDKT----DLLKHWDNTYKYITSAKNQG 55
GV I+ V + + + I V D DD ++ W + K + G
Sbjct: 40 GVTTIVRVCEA--TYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFR-EEPG 96
Query: 56 SKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96
+ VHC G+ R+ +V ++ A+ +RQKR
Sbjct: 97 CCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIRQKR 136
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 51.2 bits (122), Expect = 3e-09
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYD---DDKT----DLLKHWDNTYKYITSAKNQG 55
GV I+ V + + + I V D DD ++ W + K + G
Sbjct: 61 GVTTIVRVCEA--TYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFR-EEPG 117
Query: 56 SKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96
+ VHC G+ R+ +V ++ A+ +RQKR
Sbjct: 118 CCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIRQKR 157
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 50.7 bits (121), Expect = 4e-09
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 3 GVCHILNVTREIDNFFPGIFDYCNIRVYD---DDKT----DLLKHWDNTYKYITSAKNQG 55
+ I+++T + F + +T +++ + +T K T K G
Sbjct: 55 SIGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTLPPESIVQEFIDTVKEFTE-KCPG 113
Query: 56 SKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKRNCIKPNANFITQL 109
V VHC GI+R+ +V Y M A+ + R N++ L
Sbjct: 114 MLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHKIERQNYVQDL 167
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 36.2 bits (83), Expect = 6e-04
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 3 GVCHILNVTRE-IDNFFPGIFDYCNIRVYDDDKTDLLKHWDN-TYKYITSA-----KNQG 55
G+ I+ + E IR++ + + N I A +
Sbjct: 33 GLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKN 92
Query: 56 SKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQ 94
VL+HCK G R+ ++ K W LT ++
Sbjct: 93 HPVLIHCKRGKHRT-GCLVGCLRKLQKWCLTSIFDEYQR 130
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 34.5 bits (78), Expect = 0.005
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 51 AKNQGSKVLVHCKMGISRSASVVIAYAMKAYNW-DLTRAMAHVRQKRNCIKPN 102
+N + +VHC G + S+ +V A + + A+ + KR I +
Sbjct: 111 LQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLS 163
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 33.7 bits (76), Expect = 0.008
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 22/117 (18%)
Query: 6 HILNVTREIDNFFPG---IFDYCNIRVYDDDK-----------------TDLLKHWDNTY 45
+I +V R +D+ I++ C R YD K +L+K +
Sbjct: 43 NIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDL 102
Query: 46 KYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNW-DLTRAMAHVRQKRNCIKP 101
S + +HCK G R+ ++ AY + + A+ + R K
Sbjct: 103 DQWLSEDDNH-VAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKK 158
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 33.5 bits (75), Expect = 0.011
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 51 AKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLT-RAMAHVRQKRNCIKPNANFITQL 109
+ + +H K G R+ ++V ++ ++ +D A+ + +R + F
Sbjct: 115 TSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVE 174
Query: 110 ETYQ 113
Q
Sbjct: 175 TASQ 178
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 32.8 bits (74), Expect = 0.017
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96
Q + + H + G+ R+ + ++ M N ++ RQ
Sbjct: 212 QDAWLHFHSEAGVGRTTAFMVMTDM-LKNPSVSLKDILYRQHE 253
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 32.5 bits (73), Expect = 0.023
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 54 QGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQKR 96
+ + HC+ G R+ + + Y M N D++ RQ
Sbjct: 529 ANAWLHFHCQAGAGRTTAYMAMYDM-MKNPDVSLGDILSRQYL 570
Score = 30.9 bits (69), Expect = 0.094
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 54 QGSKVLVHCKMGISRSASVVIAYAM 78
+ + + HC G+ R+ ++ + +
Sbjct: 231 KDAWLHYHCYAGMGRTTIFMVMHDI 255
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 31.1 bits (70), Expect = 0.057
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 3 GVCHILNVTRE-IDNFFPGI--------FDYCNIRVYDDDKTDLLKHWDNTYKYITSAKN 53
GV ++N+ + + P DY I V + + + + + K
Sbjct: 40 GVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKV--EDVEAFFAAMDQHKG 97
Query: 54 QGSKVLVHCKMGISRSASVVIAYAMK 79
+ VLVHC R+++ Y +K
Sbjct: 98 K--DVLVHCLANY-RASAFAYLYQLK 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.17
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 43/106 (40%)
Query: 24 YCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKA--- 80
Y + +D D DL+ + + Y Y H I + +K
Sbjct: 453 YNIPKTFDSD--DLIPPYLDQYFY------------SH------------IGHHLKNIEH 486
Query: 81 -------------YNWDLTRAMAHVRQKRNCIKPNANFITQLETYQ 113
+ + L + + H N N + QL+ Y+
Sbjct: 487 PERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYK 531
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 29.9 bits (67), Expect = 0.18
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 14 IDNFFPGIFDYC--NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLV 60
+ F +Y Y ++ + DN I + QG KVL+
Sbjct: 40 VAVIFAANINYDTGTKTAYLHFNENVQRVLDNAVTQIRPLQQQGIKVLL 88
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase);
2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 28.5 bits (63), Expect = 0.48
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 17 FFPGI-FDYCNIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLV 60
F I +D N +V+ + ++ N KY+ +++G KV++
Sbjct: 45 FSANINYDAANDKVFVSNNPNVQHLLTNRAKYLKPLQDKGIKVIL 89
>2f46_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria
meningitidis Z2491}
Length = 156
Score = 28.0 bits (62), Expect = 0.50
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 40 HWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTRAMAHVRQ 94
+ + VL +C+ G +R + + + A + + +
Sbjct: 87 QKHDVETFRQLIGQAEYPVLAYCRTG-TRCSLLW-GFRRAAEGMPVDEIIRRAQA 139
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 27.0 bits (60), Expect = 1.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 SAKNQGSKVLVHCKMGISRSASV 72
SA++ G+KV++ K I +
Sbjct: 144 SARDAGAKVILLEKEPIPGGNTK 166
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 25.9 bits (57), Expect = 3.6
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 17 FFPGIFDYCNIRVYDDDKTDLLKHWDNT----YKYITSAKNQGSKVLVHC 62
+ P +FD + V D K L WD Y + + V + C
Sbjct: 34 YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 24.7 bits (54), Expect = 6.9
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 48 ITSAKNQGSKVLVHCKMGISRSASVV 73
+ + + V CK+G S V
Sbjct: 65 QGTQEGAAVPIYVICKLGN-DSQKAV 89
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 25.1 bits (54), Expect = 8.8
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 28 RVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSASVVIAYAMKAYNWDLTR 87
YDD + YI + ++ G VH GI A + A A+ Y W+
Sbjct: 234 TAYDDPLLGKDPQPASMKDYIQTKEDNGG---VHLNSGIPNRAFYLAATALGGYAWEKAG 290
Query: 88 AMAHVRQKRNCIKPNANFIT 107
+ + + +A+F T
Sbjct: 291 YIWYDTLCDKALPQDADFAT 310
>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED
protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5
Length = 299
Score = 25.1 bits (54), Expect = 8.8
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 20 GIFDYCNIRVYDDDK-----TDLLKHWDNTYKYITSAKNQGSKVLV 60
FDY +R Y+D ++ + + + S + + +
Sbjct: 179 RHFDYIFVRFYNDRSCQYSTGNIQRIRNAWLSWTKSVYPRDKNLFL 224
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure,
atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A
{Saccharomyces cerevisiae}
Length = 139
Score = 24.3 bits (53), Expect = 8.9
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 26 NIRVYDDDKTDLLKHWDNTYKYITSAKNQGSKVLVHCKMGISRSA 70
N+ L + + + +++ +C G R
Sbjct: 62 NVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGK-RGG 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,872,468
Number of extensions: 95054
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 58
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)