BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6372
(88 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|290561351|gb|ADD38076.1| Small nuclear ribonucleoprotein F [Lepeophtheirus salmonis]
Length = 86
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 74/84 (88%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+V+ KLKWGHEYKG LVSTDGYMN QLA+TEE IDG+CTG LGEV
Sbjct: 3 MPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+LYIRG +E DEEGE RE
Sbjct: 63 LVRCNNVLYIRGVQEDDEEGETRE 86
>gi|31212897|ref|XP_312266.1| AGAP002658-PA [Anopheles gambiae str. PEST]
gi|30177439|gb|EAA07677.2| AGAP002658-PA [Anopheles gambiae str. PEST]
Length = 88
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 74/88 (84%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWGHEYKG LVS DGYMN QLA+TEE +DG TG
Sbjct: 1 MTTAMPINPKPFLNGLTGKPVIIKLKWGHEYKGFLVSVDGYMNMQLANTEEFVDGQNTGH 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LYIRG ++ DEEGEMR+
Sbjct: 61 LGEVLIRCNNVLYIRGIDDEDEEGEMRD 88
>gi|170032813|ref|XP_001844274.1| small nuclear ribonucleoprotein F [Culex quinquefasciatus]
gi|167873231|gb|EDS36614.1| small nuclear ribonucleoprotein F [Culex quinquefasciatus]
Length = 88
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 74/88 (84%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWGHEYKG LVS DGYMN QLA+T+E +DG TG
Sbjct: 1 MTTAMPINPKPFLNGLTGKPVIIKLKWGHEYKGFLVSVDGYMNMQLANTDEYVDGQNTGH 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LYIRG ++ DEEGEMR+
Sbjct: 61 LGEVLIRCNNVLYIRGIDDDDEEGEMRD 88
>gi|312371148|gb|EFR19407.1| hypothetical protein AND_30966 [Anopheles darlingi]
Length = 88
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 74/88 (84%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK V+ KLKWGHEYKG LVS DGYMN QLA+TEE +DG TG
Sbjct: 1 MATAMPINPKPFLNGLTGKPVMIKLKWGHEYKGFLVSVDGYMNMQLANTEEFVDGQNTGH 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LYIRG ++ DEEGEMR+
Sbjct: 61 LGEVLIRCNNVLYIRGIDDEDEEGEMRD 88
>gi|225709496|gb|ACO10594.1| Small nuclear ribonucleoprotein F [Caligus rogercresseyi]
Length = 86
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 74/84 (88%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+V+ KLKWGHEYKG LVS+DGYMN QLA+TEE IDG+CTG LGEV
Sbjct: 3 MPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSSDGYMNVQLANTEEYIDGNCTGTLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+LYIRG +E DEEGE +E
Sbjct: 63 LVRCNNVLYIRGVQEDDEEGETKE 86
>gi|332031555|gb|EGI71027.1| Small nuclear ribonucleoprotein F [Acromyrmex echinatior]
Length = 88
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 75/88 (85%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK V+ KLKWGHEYKG LVS DGYMN QLA+TEE I+G+CTG
Sbjct: 1 MAATMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGNCTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN++YIRG EE DEEGEM++
Sbjct: 61 LGEVLIRCNNVMYIRGVEESDEEGEMKD 88
>gi|307186677|gb|EFN72155.1| Small nuclear ribonucleoprotein F [Camponotus floridanus]
Length = 84
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/84 (77%), Positives = 72/84 (85%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK V+ KLKWGHEYKG LVS DGYMN QLA+TEE IDG CTG LGEV
Sbjct: 1 MPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGSCTGNLGEV 60
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
LIRCNN++YIRG EE DEEGEM++
Sbjct: 61 LIRCNNVMYIRGVEESDEEGEMKD 84
>gi|22024001|ref|NP_523708.2| small ribonucleoprotein particle protein SmF [Drosophila
melanogaster]
gi|125807333|ref|XP_001360364.1| GA14154 [Drosophila pseudoobscura pseudoobscura]
gi|194754150|ref|XP_001959360.1| GF12081 [Drosophila ananassae]
gi|194883764|ref|XP_001975970.1| GG22599 [Drosophila erecta]
gi|195056665|ref|XP_001995140.1| GH22983 [Drosophila grimshawi]
gi|195122320|ref|XP_002005660.1| GI18952 [Drosophila mojavensis]
gi|195149774|ref|XP_002015830.1| GL11267 [Drosophila persimilis]
gi|195333646|ref|XP_002033498.1| GM20378 [Drosophila sechellia]
gi|195381309|ref|XP_002049395.1| GJ21558 [Drosophila virilis]
gi|195436262|ref|XP_002066088.1| GK22120 [Drosophila willistoni]
gi|195485487|ref|XP_002091113.1| GE13467 [Drosophila yakuba]
gi|195551853|ref|XP_002076311.1| GD15243 [Drosophila simulans]
gi|195551862|ref|XP_002076315.1| DebB [Drosophila simulans]
gi|29337191|sp|Q24297.2|RUXF_DROME RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Membrane-associated protein Deb-B;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|21430088|gb|AAM50722.1| GM23968p [Drosophila melanogaster]
gi|21645477|gb|AAF58559.2| small ribonucleoprotein particle protein SmF [Drosophila
melanogaster]
gi|54635536|gb|EAL24939.1| GA14154 [Drosophila pseudoobscura pseudoobscura]
gi|190620658|gb|EDV36182.1| GF12081 [Drosophila ananassae]
gi|190659157|gb|EDV56370.1| GG22599 [Drosophila erecta]
gi|193899346|gb|EDV98212.1| GH22983 [Drosophila grimshawi]
gi|193910728|gb|EDW09595.1| GI18952 [Drosophila mojavensis]
gi|194109677|gb|EDW31720.1| GL11267 [Drosophila persimilis]
gi|194125468|gb|EDW47511.1| GM20378 [Drosophila sechellia]
gi|194144192|gb|EDW60588.1| GJ21558 [Drosophila virilis]
gi|194162173|gb|EDW77074.1| GK22120 [Drosophila willistoni]
gi|194177214|gb|EDW90825.1| GE13467 [Drosophila yakuba]
gi|194201960|gb|EDX15536.1| GD15243 [Drosophila simulans]
gi|194201964|gb|EDX15540.1| DebB [Drosophila simulans]
gi|220956990|gb|ACL91038.1| DebB-PA [synthetic construct]
Length = 88
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 73/88 (82%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS +P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE+I+G TG
Sbjct: 1 MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LYI+G E+ DEEGEMR+
Sbjct: 61 LGEVLIRCNNVLYIKGMEDDDEEGEMRD 88
>gi|153792507|ref|NP_001093276.1| small nuclear ribonucleoprotein protein F [Bombyx mori]
gi|95102986|gb|ABF51434.1| small nuclear ribonucleoprotein protein F [Bombyx mori]
Length = 88
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 70/78 (89%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGKSV+ KLKWGHEYKG+LVSTDGYMN QLA+TEE++DG CTG
Sbjct: 1 MAAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGN 60
Query: 61 LGEVLIRCNNILYIRGAE 78
LGEVLIRCNN+LY+RGA+
Sbjct: 61 LGEVLIRCNNVLYVRGAD 78
>gi|357605279|gb|EHJ64538.1| small nuclear ribonucleoprotein F [Danaus plexippus]
Length = 88
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 68/77 (88%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK+V+ KLKWGHEYKG+LVS DGYMN QLA+TEEI+DG CTG
Sbjct: 1 MAASMPINPKPFLNSLTGKAVLVKLKWGHEYKGLLVSADGYMNLQLANTEEIVDGSCTGN 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN+LY+RGA
Sbjct: 61 LGEVLIRCNNVLYVRGA 77
>gi|495021|gb|AAA28445.1| membrane-associated protein [Drosophila melanogaster]
Length = 101
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 70/85 (82%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS +P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE+I+G TG
Sbjct: 1 MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGE 85
LGEVLIRCNN+LYI+G E+ DEEGE
Sbjct: 61 LGEVLIRCNNVLYIKGMEDDDEEGE 85
>gi|355564587|gb|EHH21087.1| Small nuclear ribonucleoprotein F, partial [Macaca mulatta]
Length = 86
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 70/84 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
LIRCNN+LYIRG E+ +E+GEMRE
Sbjct: 63 LIRCNNVLYIRGVEKEEEDGEMRE 86
>gi|91083615|ref|XP_969779.1| PREDICTED: similar to AGAP002658-PA [Tribolium castaneum]
gi|270007843|gb|EFA04291.1| hypothetical protein TcasGA2_TC014582 [Tribolium castaneum]
Length = 88
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 67/77 (87%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MST +P NPKPFLN LTGK+V+ KLKWGHEYKG LVS DGYMN QLA+TEE IDG+ TG
Sbjct: 1 MSTAMPINPKPFLNGLTGKAVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEFIDGNMTGN 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN+L+IRGA
Sbjct: 61 LGEVLIRCNNVLFIRGA 77
>gi|321478414|gb|EFX89371.1| hypothetical protein DAPPUDRAFT_220519 [Daphnia pulex]
Length = 88
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 75/88 (85%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ P+P NPKPFLN LTGK ++ KLKWGHEYKG LVS DGYMN QLA+TEE IDG CTG
Sbjct: 1 MAAPMPINPKPFLNALTGKPIMVKLKWGHEYKGYLVSVDGYMNLQLANTEEYIDGSCTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVL+RCNN+LYIRG EE DEEGEMR+
Sbjct: 61 LGEVLVRCNNVLYIRGVEEDDEEGEMRD 88
>gi|303274735|ref|XP_003056683.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461035|gb|EEH58328.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 84
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK++I KLKWG EYKG LVSTD YMN QLASTEE IDG G
Sbjct: 1 MAATVPVNPKPFLNQLTGKAIIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGKFAGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEG 84
LGEVLIRCNN+LY+RGA E DEEG
Sbjct: 61 LGEVLIRCNNVLYLRGAPE-DEEG 83
>gi|302843278|ref|XP_002953181.1| hypothetical protein VOLCADRAFT_109863 [Volvox carteri f.
nagariensis]
gi|300261568|gb|EFJ45780.1| hypothetical protein VOLCADRAFT_109863 [Volvox carteri f.
nagariensis]
Length = 85
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 65/82 (79%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFL LTGK VI KLKWG EYKG LVSTD YMN QLASTEE IDG TG+
Sbjct: 1 MAAFVPVNPKPFLQDLTGKQVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEFIDGQFTGQ 60
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGEVLIRCNN+LY+RG E DE
Sbjct: 61 LGEVLIRCNNVLYLRGVPEEDE 82
>gi|241735825|ref|XP_002413964.1| membrane-associated protein, putative [Ixodes scapularis]
gi|215507818|gb|EEC17272.1| membrane-associated protein, putative [Ixodes scapularis]
gi|346470799|gb|AEO35244.1| hypothetical protein [Amblyomma maculatum]
gi|346470801|gb|AEO35245.1| hypothetical protein [Amblyomma maculatum]
gi|442748773|gb|JAA66546.1| Putative small nuclear ribonucleoprotein polypeptide f [Ixodes
ricinus]
Length = 87
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 72/84 (85%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG+CTG LGEV
Sbjct: 4 LPLNPKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEV 63
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+LY+RG EE +E+GEM++
Sbjct: 64 LVRCNNVLYVRGVEEEEEDGEMKD 87
>gi|427786011|gb|JAA58457.1| Putative small nuclear ribonucleoprotein polypeptide f
[Rhipicephalus pulchellus]
Length = 87
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 72/84 (85%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG+CTG LGEV
Sbjct: 4 LPLNPKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEV 63
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+LY+RG EE +E+GEM++
Sbjct: 64 LLRCNNVLYVRGVEEEEEDGEMKD 87
>gi|255088585|ref|XP_002506215.1| predicted protein [Micromonas sp. RCC299]
gi|226521486|gb|ACO67473.1| predicted protein [Micromonas sp. RCC299]
Length = 86
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK +I KLKWG EYKG LVSTD YMN QLASTEE +DG G
Sbjct: 1 MAATVPVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LY+RGAE DE G+ E
Sbjct: 61 LGEVLIRCNNVLYLRGAE--DEGGDAME 86
>gi|159479232|ref|XP_001697697.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
gi|158274065|gb|EDO99849.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
Length = 85
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 65/82 (79%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFL LTGK VI KLKWG EYKG LVSTD YMN QLASTEE IDG TG+
Sbjct: 1 MAAFVPVNPKPFLQDLTGKQVIVKLKWGMEYKGYLVSTDSYMNLQLASTEEYIDGQFTGQ 60
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGEVLIRCNN++Y+RG E DE
Sbjct: 61 LGEVLIRCNNVMYLRGVPEEDE 82
>gi|42415804|gb|AAS15770.1| DebB [Drosophila simulans]
Length = 79
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 66/79 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE+I+G TG LGEV
Sbjct: 1 MPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEV 60
Query: 65 LIRCNNILYIRGAEEGDEE 83
LIRCNN+LYI+G E+ DEE
Sbjct: 61 LIRCNNVLYIKGMEDDDEE 79
>gi|110760095|ref|XP_001120305.1| PREDICTED: small nuclear ribonucleoprotein F isoform 1 [Apis
mellifera]
gi|328782586|ref|XP_003250168.1| PREDICTED: small nuclear ribonucleoprotein F isoform 2 [Apis
mellifera]
gi|380015356|ref|XP_003691669.1| PREDICTED: small nuclear ribonucleoprotein F-like [Apis florea]
gi|383862941|ref|XP_003706941.1| PREDICTED: small nuclear ribonucleoprotein F-like [Megachile
rotundata]
Length = 88
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 75/88 (85%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK V+ KLKWGHEYKG LVS DGYMN QLA+TEE IDG+CTG
Sbjct: 1 MAATMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN++YIRG EE DEEGEM++
Sbjct: 61 LGEVLIRCNNVMYIRGVEEEDEEGEMKD 88
>gi|384248919|gb|EIE22402.1| small nuclear ribo protein F [Coccomyxa subellipsoidea C-169]
Length = 85
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 64/82 (78%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLASTEE IDG TG
Sbjct: 1 MAATVPVNPKPFLNGLTGKPVIIKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGEVLIRCNN+LY+RG E DE
Sbjct: 61 LGEVLIRCNNVLYMRGVPEEDE 82
>gi|307107458|gb|EFN55701.1| hypothetical protein CHLNCDRAFT_23084, partial [Chlorella
variabilis]
Length = 81
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 63/80 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLASTEE IDG TG LGEV
Sbjct: 2 VPVNPKPFLNDLTGKQVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEV 61
Query: 65 LIRCNNILYIRGAEEGDEEG 84
LIRCNN+LY+RGA E E G
Sbjct: 62 LIRCNNVLYLRGAPEEQEAG 81
>gi|48145619|emb|CAG33032.1| SNRPF [Homo sapiens]
Length = 86
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 70/84 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
LIRCNN+LYIRG EE +E+GEMR+
Sbjct: 63 LIRCNNVLYIRGVEEEEEDGEMRD 86
>gi|241610412|ref|XP_002406902.1| membrane-associated protein, putative [Ixodes scapularis]
gi|215502736|gb|EEC12230.1| membrane-associated protein, putative [Ixodes scapularis]
Length = 84
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG+CTG LGEV
Sbjct: 4 LPLNPKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEV 63
Query: 65 LIRCNNILYIRGAEEGDEEGE 85
L+RCNN+LY+RG EE +E+GE
Sbjct: 64 LVRCNNVLYVRGVEEEEEDGE 84
>gi|395538237|ref|XP_003771091.1| PREDICTED: uncharacterized protein LOC100930019 [Sarcophilus
harrisii]
Length = 397
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++T LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 310 VTTSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 369
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 370 LGEVLIRCNNVLYIRG 385
>gi|340719936|ref|XP_003398400.1| PREDICTED: small nuclear ribonucleoprotein F-like [Bombus
terrestris]
gi|350410809|ref|XP_003489148.1| PREDICTED: small nuclear ribonucleoprotein F-like [Bombus
impatiens]
Length = 88
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 75/88 (85%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK V+ KLKWGHEYKG LVS DGYMN QLA+TEE I+G+CTG
Sbjct: 1 MAATMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGNCTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN++YIRG EE DEEGEM++
Sbjct: 61 LGEVLIRCNNVMYIRGVEEEDEEGEMKD 88
>gi|391341913|ref|XP_003745271.1| PREDICTED: small nuclear ribonucleoprotein F-like [Metaseiulus
occidentalis]
Length = 87
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 61/73 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN TGK VI KLKWG EYKG LVS DGYMN QLA+TEE IDG CTG LGEV
Sbjct: 4 LPLNPKPFLNSFTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGSCTGNLGEV 63
Query: 65 LIRCNNILYIRGA 77
L+RCNN+LY+RGA
Sbjct: 64 LVRCNNVLYVRGA 76
>gi|156392353|ref|XP_001636013.1| predicted protein [Nematostella vectensis]
gi|156223112|gb|EDO43950.1| predicted protein [Nematostella vectensis]
Length = 88
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 63/76 (82%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWG EYKG LVS DGYMN QLA+TEE IDG TG
Sbjct: 1 MATMMPLNPKPFLNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGALTGN 60
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LY+RG
Sbjct: 61 LGEVLIRCNNVLYVRG 76
>gi|307213128|gb|EFN88650.1| Small nuclear ribonucleoprotein F [Harpegnathos saltator]
Length = 88
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 74/88 (84%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK VI KLKWGHEYKG LVS DGYMN QLA+TEE I+G CTG
Sbjct: 1 MAATMPINPKPFLNGLTGKPVIVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGTCTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
+GEVLIRCNN++YIRG EE DEEGEM++
Sbjct: 61 VGEVLIRCNNVMYIRGVEEEDEEGEMKD 88
>gi|300116730|ref|NP_001177858.1| small nuclear ribonucleoprotein F [Nasonia vitripennis]
Length = 88
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 73/88 (82%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFLN LTGK V+ KLKWGHEYKG LVS DGYMN QLA+ EE IDG+ TG
Sbjct: 1 MAATMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNVQLANAEEHIDGNLTGS 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN++YIRG EE DEEGEM++
Sbjct: 61 LGEVLIRCNNVMYIRGVEEEDEEGEMKD 88
>gi|221120213|ref|XP_002166685.1| PREDICTED: small nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 89
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 64/78 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA++EE IDG TG LGE+
Sbjct: 4 LPLNPKPFLNGLTGKPVMIKLKWGMEYKGYLVSVDGYMNMQLANSEEFIDGTFTGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LYIRG E+ D+
Sbjct: 64 LIRCNNVLYIRGVEDEDD 81
>gi|449456561|ref|XP_004146017.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein F-like [Cucumis sativus]
gi|449503654|ref|XP_004162110.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 88
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 63/78 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+V+ KLKWG EYKG LVS D YMN QLA+TEE IDG TG LGE+
Sbjct: 4 IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E +E
Sbjct: 64 LIRCNNVLYLRGVPEDEE 81
>gi|402586897|gb|EJW80834.1| small nuclear ribonucleoprotein F [Wuchereria bancrofti]
Length = 94
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 65/82 (79%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T P NPKPFLN LTGK V+CKLKWG EYKG LVS DGYMN QLA+ EE IDG TG
Sbjct: 10 MTTLQPVNPKPFLNGLTGKPVVCKLKWGMEYKGYLVSVDGYMNLQLANAEEYIDGRHTGD 69
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
+GEVLIRCNN+L++ GAEE E
Sbjct: 70 VGEVLIRCNNVLWVGGAEESSE 91
>gi|390336861|ref|XP_796806.3| PREDICTED: small nuclear ribonucleoprotein F-like
[Strongylocentrotus purpuratus]
Length = 88
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 63/77 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK V+ +LKWG EYKG LVS DGYMN QLASTEE IDG TG
Sbjct: 1 MTTGMPLNPKPFLNGLTGKPVMVRLKWGMEYKGYLVSVDGYMNVQLASTEEYIDGTFTGN 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN++YIRG
Sbjct: 61 LGEVLIRCNNVMYIRGV 77
>gi|291244974|ref|XP_002742366.1| PREDICTED: Snrpf protein-like [Saccoglossus kowalevskii]
Length = 88
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 62/77 (80%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG TG
Sbjct: 1 MAATLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGTLTGN 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN++YIRG
Sbjct: 61 LGEVLIRCNNVMYIRGV 77
>gi|312082117|ref|XP_003143311.1| hypothetical protein LOAG_07730 [Loa loa]
gi|307761525|gb|EFO20759.1| small nuclear ribonucleoprotein F [Loa loa]
Length = 85
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 65/82 (79%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T P NPKPFLN LTGK V+CKLKWG EYKG LVS DGYMN QLA+ EE IDG TG
Sbjct: 1 MTTLQPVNPKPFLNGLTGKPVVCKLKWGMEYKGYLVSVDGYMNLQLANAEEYIDGRHTGD 60
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
+GEVLIRCNN+L++ GAEE E
Sbjct: 61 VGEVLIRCNNVLWVGGAEESSE 82
>gi|116782528|gb|ABK22541.1| unknown [Picea sitchensis]
Length = 84
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 62/78 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLASTEE IDG TG LGEV
Sbjct: 4 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEV 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E ++
Sbjct: 64 LIRCNNVLYLRGVPEDED 81
>gi|340368862|ref|XP_003382969.1| PREDICTED: small nuclear ribonucleoprotein F-like [Amphimedon
queenslandica]
Length = 87
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFL+ LTGKSVI KLKWG EYKG LVSTD YMN QLA+TEE IDG TG
Sbjct: 1 MAGVMPVNPKPFLSGLTGKSVIVKLKWGMEYKGYLVSTDSYMNVQLANTEEYIDGSLTGN 60
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LY+RG
Sbjct: 61 LGEVLIRCNNVLYVRG 76
>gi|334348082|ref|XP_001371072.2| PREDICTED: hypothetical protein LOC100017542 [Monodelphis
domestica]
Length = 328
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/72 (77%), Positives = 60/72 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 245 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 304
Query: 65 LIRCNNILYIRG 76
LIRCNN+LYIRG
Sbjct: 305 LIRCNNVLYIRG 316
>gi|218190178|gb|EEC72605.1| hypothetical protein OsI_06076 [Oryza sativa Indica Group]
gi|222622299|gb|EEE56431.1| hypothetical protein OsJ_05599 [Oryza sativa Japonica Group]
Length = 146
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE IDG +G LGE+
Sbjct: 64 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEI 123
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E E
Sbjct: 124 LIRCNNVLYLRGVPEDTE 141
>gi|255579817|ref|XP_002530746.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223529710|gb|EEF31652.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 88
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+VI KLKWG EYKG L S D YMN QL +TEE IDG TG LGE+
Sbjct: 4 IPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEFIDGQFTGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E +E
Sbjct: 64 LIRCNNVLYLRGVPEDEE 81
>gi|15234669|ref|NP_194751.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
gi|297798954|ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp.
lyrata]
gi|297836060|ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp.
lyrata]
gi|10720264|sp|Q9SUM2.1|RUXF_ARATH RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|5730132|emb|CAB52466.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|7269922|emb|CAB81015.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|21593208|gb|AAM65157.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|30102544|gb|AAP21190.1| At4g30220 [Arabidopsis thaliana]
gi|110743810|dbj|BAE99740.1| snRNP Sm protein F - like [Arabidopsis thaliana]
gi|297313197|gb|EFH43620.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp.
lyrata]
gi|297331752|gb|EFH62171.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp.
lyrata]
gi|332660339|gb|AEE85739.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 88
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+VI KLKWG EYKG L S D YMN QL +TEE IDG TG LGE+
Sbjct: 4 IPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E +E
Sbjct: 64 LIRCNNVLYVRGVPEDEE 81
>gi|296212622|ref|XP_002752905.1| PREDICTED: small nuclear ribonucleoprotein F [Callithrix jacchus]
Length = 131
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 44 VTMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 103
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 104 LGEVLIRCNNVLYIRG 119
>gi|221219120|gb|ACM08221.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|221219208|gb|ACM08265.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|225714736|gb|ACO13214.1| Small nuclear ribonucleoprotein F [Esox lucius]
Length = 87
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS D YMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+L+IRG EE +E+GEM++
Sbjct: 63 LVRCNNVLFIRGVEEEEEDGEMKD 86
>gi|41946811|gb|AAH66015.1| Snrpf protein, partial [Mus musculus]
Length = 112
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 25 VAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 84
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 85 LGEVLIRCNNVLYIRG 100
>gi|440903909|gb|ELR54499.1| Small nuclear ribonucleoprotein F, partial [Bos grunniens mutus]
Length = 113
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 26 VAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 85
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 86 LGEVLIRCNNVLYIRG 101
>gi|209736898|gb|ACI69318.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS D YMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+L+IRG EE +E+GEM++
Sbjct: 63 LVRCNNVLFIRGVEEEEEDGEMKD 86
>gi|225468340|ref|XP_002272246.1| PREDICTED: probable small nuclear ribonucleoprotein F [Vitis
vinifera]
gi|296083390|emb|CBI23345.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA++EE IDG TG
Sbjct: 1 MAT-VPLNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANSEEYIDGQFTGN 59
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGE+LIRCNN+LY+RG E +E
Sbjct: 60 LGEILIRCNNVLYLRGVPEDEE 81
>gi|395744685|ref|XP_002823653.2| PREDICTED: uncharacterized protein LOC100451758 [Pongo abelii]
Length = 293
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 206 VTMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 265
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 266 LGEVLIRCNNVLYIRG 281
>gi|354478551|ref|XP_003501478.1| PREDICTED: small nuclear ribonucleoprotein F-like [Cricetulus
griseus]
Length = 169
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 60/72 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 86 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 145
Query: 65 LIRCNNILYIRG 76
LIRCNN+LYIRG
Sbjct: 146 LIRCNNVLYIRG 157
>gi|356575227|ref|XP_003555743.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine
max]
gi|255628071|gb|ACU14380.1| unknown [Glycine max]
Length = 88
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE I+G TG
Sbjct: 1 MAT-IPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGN 59
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGE+LIRCNN+LY+RG E +E ++ E
Sbjct: 60 LGEILIRCNNVLYLRGVPEDEEIEDVAE 87
>gi|431905318|gb|ELK10363.1| Small nuclear ribonucleoprotein F [Pteropus alecto]
Length = 182
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 95 VTMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 154
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 155 LGEVLIRCNNVLYIRG 170
>gi|297263296|ref|XP_002798787.1| PREDICTED: hypothetical protein LOC716917 [Macaca mulatta]
Length = 240
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 60/72 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 157 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 216
Query: 65 LIRCNNILYIRG 76
LIRCNN+LYIRG
Sbjct: 217 LIRCNNVLYIRG 228
>gi|388514177|gb|AFK45150.1| unknown [Lotus japonicus]
Length = 88
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE I+G TG
Sbjct: 1 MAT-IPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGN 59
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGE+LIRCNN+LY+RG E +E
Sbjct: 60 LGEILIRCNNVLYLRGVPEDEE 81
>gi|268575376|ref|XP_002642667.1| C. briggsae CBR-SNR-5 protein [Caenorhabditis briggsae]
Length = 86
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 63/78 (80%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK+V+CKLKWG EYKGILV+ D YMN QLA+ EE IDG+ TG
Sbjct: 1 MSAVQPVNPKPFLNSLTGKNVVCKLKWGMEYKGILVAVDSYMNLQLANAEEYIDGNNTGN 60
Query: 61 LGEVLIRCNNILYIRGAE 78
LGE+LIRCNN+LY+ G +
Sbjct: 61 LGEILIRCNNVLYVGGQD 78
>gi|308808123|ref|XP_003081372.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
gi|116059834|emb|CAL55541.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
Length = 836
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P+ NPKPFL LTGK V +LKWG EY+G LVSTD YMN QLASTEE IDG G
Sbjct: 758 MSAPI--NPKPFLAALTGKRVAVRLKWGMEYRGFLVSTDAYMNLQLASTEEYIDGELQGA 815
Query: 61 LGEVLIRCNNILYIRGAEE 79
LGEVLIRCNN++Y+RG EE
Sbjct: 816 LGEVLIRCNNVMYLRGVEE 834
>gi|357479653|ref|XP_003610112.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|355511167|gb|AES92309.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|388505566|gb|AFK40849.1| unknown [Medicago truncatula]
Length = 88
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 63/78 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE I+G+ TG LGE+
Sbjct: 4 IPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E +E
Sbjct: 64 LIRCNNVLYMRGVPEDEE 81
>gi|327272686|ref|XP_003221115.1| PREDICTED: small nuclear ribonucleoprotein F-like [Anolis
carolinensis]
Length = 140
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 61/77 (79%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
+ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 53 LQISLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAMSGH 112
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN+LYIRG
Sbjct: 113 LGEVLIRCNNVLYIRGV 129
>gi|242007618|ref|XP_002424631.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212508097|gb|EEB11893.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 87
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 69/84 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE I G TG LGEV
Sbjct: 4 MPINPKPFLNSLTGKPVMVKLKWGQEYKGYLVSVDGYMNLQLANTEEYISGQPTGSLGEV 63
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+LYIRG EE DEEGEM++
Sbjct: 64 LVRCNNVLYIRGVEEEDEEGEMKD 87
>gi|115444577|ref|NP_001046068.1| Os02g0177500 [Oryza sativa Japonica Group]
gi|50252055|dbj|BAD27986.1| putative small nuclear ribonucleoprotein polypeptide F [Oryza
sativa Japonica Group]
gi|113535599|dbj|BAF07982.1| Os02g0177500 [Oryza sativa Japonica Group]
Length = 86
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE IDG +G LGE+
Sbjct: 4 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E E
Sbjct: 64 LIRCNNVLYLRGVPEDTE 81
>gi|115486505|ref|NP_001068396.1| Os11g0657300 [Oryza sativa Japonica Group]
gi|77552372|gb|ABA95169.1| small nuclear ribonucleoprotein F, putative, expressed [Oryza
sativa Japonica Group]
gi|113645618|dbj|BAF28759.1| Os11g0657300 [Oryza sativa Japonica Group]
gi|215693012|dbj|BAG88432.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186140|gb|EEC68567.1| hypothetical protein OsI_36896 [Oryza sativa Indica Group]
gi|222616369|gb|EEE52501.1| hypothetical protein OsJ_34703 [Oryza sativa Japonica Group]
Length = 86
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE IDG +G
Sbjct: 1 MAT-VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGN 59
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGE+LIRCNN+LY+RG E E
Sbjct: 60 LGEILIRCNNVLYLRGVPEDAE 81
>gi|410918663|ref|XP_003972804.1| PREDICTED: small nuclear ribonucleoprotein F-like [Takifugu
rubripes]
Length = 88
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 60/77 (77%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE +DG G
Sbjct: 1 MVRSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVDGALAGH 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN+LYIRG
Sbjct: 61 LGEVLIRCNNVLYIRGV 77
>gi|260800049|ref|XP_002594949.1| hypothetical protein BRAFLDRAFT_271061 [Branchiostoma floridae]
gi|229280187|gb|EEN50960.1| hypothetical protein BRAFLDRAFT_271061 [Branchiostoma floridae]
Length = 87
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MST LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG G
Sbjct: 1 MST-LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGALAGN 59
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN+LYIRG
Sbjct: 60 LGEVLIRCNNVLYIRGV 76
>gi|77552373|gb|ABA95170.1| small nuclear ribonucleoprotein F, putative, expressed [Oryza
sativa Japonica Group]
Length = 85
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE IDG +G LGE+
Sbjct: 3 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEI 62
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E E
Sbjct: 63 LIRCNNVLYLRGVPEDAE 80
>gi|397473639|ref|XP_003808313.1| PREDICTED: uncharacterized protein LOC100993647 [Pan paniscus]
Length = 207
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 60/72 (83%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 124 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 183
Query: 65 LIRCNNILYIRG 76
LIRCNN+LYIRG
Sbjct: 184 LIRCNNVLYIRG 195
>gi|74353864|gb|AAI02193.1| SNRPF protein [Bos taurus]
Length = 119
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 32 VAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 91
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 92 LGEVLIRCNNVLYIRG 107
>gi|168017152|ref|XP_001761112.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687798|gb|EDQ74179.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLASTEE +DG TG LGEV
Sbjct: 4 IPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEV 63
Query: 65 LIRCNNILYIRGA 77
LIRCNN++Y+RG
Sbjct: 64 LIRCNNVMYLRGV 76
>gi|334187031|ref|NP_001190872.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
gi|332660340|gb|AEE85740.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 96
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+VI KLKWG EYKG L S D YMN QL +TEE IDG TG LGE+
Sbjct: 12 IPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEI 71
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E +E
Sbjct: 72 LIRCNNVLYVRGVPEDEE 89
>gi|357137844|ref|XP_003570509.1| PREDICTED: probable small nuclear ribonucleoprotein F-like
[Brachypodium distachyon]
Length = 86
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE IDG +G LGE+
Sbjct: 4 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN++Y+RG E E
Sbjct: 64 LIRCNNVMYMRGVPEDTE 81
>gi|242056189|ref|XP_002457240.1| hypothetical protein SORBIDRAFT_03g003900 [Sorghum bicolor]
gi|241929215|gb|EES02360.1| hypothetical protein SORBIDRAFT_03g003900 [Sorghum bicolor]
Length = 86
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+VI KLKWG EYKG L S D YMN QLA+TEE IDG +G LGE+
Sbjct: 4 VPVNPKPFLNNLTGKTVIVKLKWGMEYKGYLTSVDSYMNLQLANTEEYIDGQFSGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E E
Sbjct: 64 LIRCNNVLYLRGVPEDTE 81
>gi|357123340|ref|XP_003563369.1| PREDICTED: probable small nuclear ribonucleoprotein F-like
[Brachypodium distachyon]
Length = 86
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE IDG +G LGE+
Sbjct: 4 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN++Y+RG E E
Sbjct: 64 LIRCNNVMYLRGVPEDTE 81
>gi|326512700|dbj|BAK03257.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 87
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 61/79 (77%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFL LTGK VI KLKWG EYKG LVS D YMN QL+ TEE IDG C+G LG++
Sbjct: 4 VPVNPKPFLQNLTGKMVIVKLKWGMEYKGYLVSVDSYMNLQLSGTEEFIDGQCSGNLGDI 63
Query: 65 LIRCNNILYIRGAEEGDEE 83
LIRCNN++Y+RG E D E
Sbjct: 64 LIRCNNVMYLRGVPEVDTE 82
>gi|291389755|ref|XP_002711328.1| PREDICTED: SNRPF protein-like [Oryctolagus cuniculus]
Length = 102
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 19 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 78
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 79 LIRCNNVLYIRGV 91
>gi|345780722|ref|XP_539726.3| PREDICTED: uncharacterized protein LOC482609 [Canis lupus
familiaris]
Length = 316
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 229 VAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 288
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 289 LGEVLIRCNNVLYIRG 304
>gi|168049785|ref|XP_001777342.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671318|gb|EDQ57872.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 85
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLASTEE +DG TG LGEV
Sbjct: 2 VPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEV 61
Query: 65 LIRCNNILYIRGA 77
LIRCNN++Y+RG
Sbjct: 62 LIRCNNVMYLRGV 74
>gi|403276113|ref|XP_003929758.1| PREDICTED: uncharacterized protein LOC101045055 [Saimiri
boliviensis boliviensis]
Length = 209
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 126 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 185
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 186 LIRCNNVLYIRGV 198
>gi|224143719|ref|XP_002325051.1| predicted protein [Populus trichocarpa]
gi|222866485|gb|EEF03616.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+VI KLKWG EYKG L S D YMN QL +TEE IDG TG LGE+
Sbjct: 4 VPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQFTGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
LIRCNN+LY+RG E DE+ E E
Sbjct: 64 LIRCNNVLYLRGVPE-DEDIEDAE 86
>gi|410965324|ref|XP_003989200.1| PREDICTED: uncharacterized protein LOC101091795 [Felis catus]
Length = 317
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 230 VAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 289
Query: 61 LGEVLIRCNNILYIRG 76
LGEVLIRCNN+LYIRG
Sbjct: 290 LGEVLIRCNNVLYIRG 305
>gi|302782820|ref|XP_002973183.1| hypothetical protein SELMODRAFT_228181 [Selaginella
moellendorffii]
gi|302789802|ref|XP_002976669.1| hypothetical protein SELMODRAFT_228413 [Selaginella
moellendorffii]
gi|300155707|gb|EFJ22338.1| hypothetical protein SELMODRAFT_228413 [Selaginella
moellendorffii]
gi|300158936|gb|EFJ25557.1| hypothetical protein SELMODRAFT_228181 [Selaginella
moellendorffii]
Length = 84
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+V+ KLKWG EYKG L+S D YMN QL +TEE IDG G LGEV
Sbjct: 4 VPVNPKPFLNELTGKAVMVKLKWGMEYKGFLISVDSYMNLQLGNTEEFIDGQFAGNLGEV 63
Query: 65 LIRCNNILYIRGAEEGDEEG 84
LIRCNN+LY+RG E +EEG
Sbjct: 64 LIRCNNVLYLRGIPE-EEEG 82
>gi|355786423|gb|EHH66606.1| Small nuclear ribonucleoprotein F, partial [Macaca fascicularis]
Length = 86
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|4507131|ref|NP_003086.1| small nuclear ribonucleoprotein F [Homo sapiens]
gi|52346080|ref|NP_001005083.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|147903163|ref|NP_001080901.1| small nuclear ribonucleoprotein F [Xenopus laevis]
gi|186910249|ref|NP_001119563.1| small nuclear ribonucleoprotein F [Rattus norvegicus]
gi|254028189|ref|NP_081522.1| small nuclear ribonucleoprotein F [Mus musculus]
gi|298160925|ref|NP_001177142.1| small nuclear ribonucleoprotein polypeptide F [Sus scrofa]
gi|303324598|ref|NP_001181956.1| small nuclear ribonucleoprotein F [Bos taurus]
gi|118082523|ref|XP_416157.2| PREDICTED: small nuclear ribonucleoprotein F [Gallus gallus]
gi|301767736|ref|XP_002919282.1| PREDICTED: small nuclear ribonucleoprotein F-like [Ailuropoda
melanoleuca]
gi|338721167|ref|XP_003364320.1| PREDICTED: small nuclear ribonucleoprotein F-like [Equus
caballus]
gi|344266498|ref|XP_003405317.1| PREDICTED: small nuclear ribonucleoprotein F-like [Loxodonta
africana]
gi|348581020|ref|XP_003476276.1| PREDICTED: small nuclear ribonucleoprotein F-like [Cavia
porcellus]
gi|395820047|ref|XP_003783389.1| PREDICTED: small nuclear ribonucleoprotein F [Otolemur garnettii]
gi|410047113|ref|XP_003313967.2| PREDICTED: small nuclear ribonucleoprotein F [Pan troglodytes]
gi|426225041|ref|XP_004006676.1| PREDICTED: small nuclear ribonucleoprotein F [Ovis aries]
gi|426373754|ref|XP_004053753.1| PREDICTED: small nuclear ribonucleoprotein F [Gorilla gorilla
gorilla]
gi|441626858|ref|XP_003259549.2| PREDICTED: small nuclear ribonucleoprotein F [Nomascus
leucogenys]
gi|54039569|sp|P62321.1|RUXF_XENLA RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|61237391|sp|P62306.1|RUXF_HUMAN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|61237394|sp|P62307.1|RUXF_MOUSE RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|166233535|sp|Q3T0Z8.2|RUXF_BOVIN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|225734044|pdb|3CW1|F Chain F, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734053|pdb|3CW1|Z Chain Z, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734062|pdb|3CW1|1 Chain 1, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734071|pdb|3CW1|2 Chain 2, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583604|pdb|3PGW|F Chain F, Crystal Structure Of Human U1 Snrnp
gi|315583613|pdb|3PGW|I Chain I, Crystal Structure Of Human U1 Snrnp
gi|332639438|pdb|2Y9A|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639445|pdb|2Y9A|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639452|pdb|2Y9A|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639462|pdb|2Y9B|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639469|pdb|2Y9B|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639476|pdb|2Y9B|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639486|pdb|2Y9C|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639493|pdb|2Y9C|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639500|pdb|2Y9C|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639510|pdb|2Y9D|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639517|pdb|2Y9D|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639524|pdb|2Y9D|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781213|pdb|3S6N|F Chain F, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302202|pdb|4F7U|F Chain F, Macromolecular Machine 6
gi|444302203|pdb|4F7U|I Chain I, Macromolecular Machine 6
gi|453055425|pdb|1VU2|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453055433|pdb|1VU2|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453055441|pdb|1VU2|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453055449|pdb|1VU2|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453055457|pdb|1VU2|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453055465|pdb|1VU2|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453055477|pdb|1VU2|ZZ Chain z, The 8s Snrnp Assembly Intermediate
gi|453055481|pdb|1VU3|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453055489|pdb|1VU3|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453055497|pdb|1VU3|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453055505|pdb|1VU3|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453055513|pdb|1VU3|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453055521|pdb|1VU3|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453056013|pdb|4F77|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453056021|pdb|4F77|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453056029|pdb|4F77|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453056037|pdb|4F77|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453056045|pdb|4F77|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453056053|pdb|4F77|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453056065|pdb|4F77|ZZ Chain z, The 8s Snrnp Assembly Intermediate
gi|806564|emb|CAA59688.1| Sm protein F [Homo sapiens]
gi|12842305|dbj|BAB25551.1| unnamed protein product [Mus musculus]
gi|33417283|gb|AAH56127.1| Snrpf-prov protein [Xenopus laevis]
gi|49900002|gb|AAH77006.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|71682561|gb|AAI00500.1| Snrpf protein [Mus musculus]
gi|89273434|emb|CAJ82339.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|119617954|gb|EAW97548.1| small nuclear ribonucleoprotein polypeptide F, isoform CRA_a
[Homo sapiens]
gi|124504507|gb|AAI28454.1| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|124504583|gb|AAI28453.1| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|127796370|gb|AAH02505.3| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|127799057|gb|AAH63397.2| SNRPF protein [Homo sapiens]
gi|148689615|gb|EDL21562.1| mCG4969 [Mus musculus]
gi|149067174|gb|EDM16907.1| rCG48672 [Rattus norvegicus]
gi|189053073|dbj|BAG34695.1| unnamed protein product [Homo sapiens]
gi|296487589|tpg|DAA29702.1| TPA: small nuclear ribonucleoprotein polypeptide F [Bos taurus]
gi|383412003|gb|AFH29215.1| small nuclear ribonucleoprotein F [Macaca mulatta]
gi|384942318|gb|AFI34764.1| small nuclear ribonucleoprotein F [Macaca mulatta]
gi|410214144|gb|JAA04291.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
gi|410287118|gb|JAA22159.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
Length = 86
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|403269393|ref|XP_003926727.1| PREDICTED: small nuclear ribonucleoprotein F-like [Saimiri
boliviensis boliviensis]
Length = 86
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|47218337|emb|CAG04169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 87
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE +DG G LGEV
Sbjct: 4 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEV 63
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 64 LIRCNNVLYIRGV 76
>gi|209733744|gb|ACI67741.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|303668331|gb|ADM16295.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 67/84 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKW EYKG LVS D YMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWDMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+L+IRG EE +E+GEM++
Sbjct: 63 LVRCNNVLFIRGVEEEEEDGEMKD 86
>gi|402887300|ref|XP_003907034.1| PREDICTED: uncharacterized protein LOC101012297 [Papio anubis]
Length = 254
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 171 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 230
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 231 LIRCNNVLYIRGV 243
>gi|443704311|gb|ELU01412.1| hypothetical protein CAPTEDRAFT_159680 [Capitella teleta]
Length = 86
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 69/84 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 MPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGTLSGNLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
IRCNN+LY+RG EE DEEGEM++
Sbjct: 63 FIRCNNVLYVRGVEEEDEEGEMKD 86
>gi|308481948|ref|XP_003103178.1| CRE-SNR-5 protein [Caenorhabditis remanei]
gi|308260283|gb|EFP04236.1| CRE-SNR-5 protein [Caenorhabditis remanei]
Length = 86
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK V+CKLKWG EYKGILV+ D YMN QLA EE IDG+ TG
Sbjct: 1 MSVVQPINPKPFLNSLTGKPVVCKLKWGMEYKGILVAVDSYMNLQLAHAEEYIDGNNTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGE 85
LGE+LIRCNN+LY+ G + E GE
Sbjct: 61 LGEILIRCNNVLYVGGVD--GESGE 83
>gi|242064206|ref|XP_002453392.1| hypothetical protein SORBIDRAFT_04g005200 [Sorghum bicolor]
gi|241933223|gb|EES06368.1| hypothetical protein SORBIDRAFT_04g005200 [Sorghum bicolor]
Length = 86
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P NPKPFLN LTGK VI KLKWG EYKG L S D YMN QLA+TEE IDG +G
Sbjct: 1 MAT-VPVNPKPFLNNLTGKFVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGN 59
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGE+LIRCNN+LY+RG E E
Sbjct: 60 LGEILIRCNNVLYLRGVPEDAE 81
>gi|229365806|gb|ACQ57883.1| Small nuclear ribonucleoprotein F [Anoplopoma fimbria]
Length = 86
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMAKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|384496589|gb|EIE87080.1| small nuclear ribonucleoprotein F [Rhizopus delemar RA 99-880]
Length = 85
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK V KLKWG EY+G LVS D YMN QLA+TEE DG G LGEV
Sbjct: 4 VPVNPKPFLNDLTGKPVSVKLKWGGEYQGYLVSVDNYMNLQLANTEEFQDGVSVGTLGEV 63
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
LIRCNN+LYIRG EE +EG+M E
Sbjct: 64 LIRCNNVLYIRGVEE--DEGKMEE 85
>gi|341900660|gb|EGT56595.1| CBN-SNR-5 protein [Caenorhabditis brenneri]
Length = 86
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 61/78 (78%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK V+CKLKWG EYKG+LV+ D YMN QLA EE IDG+ TG
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNNTGN 60
Query: 61 LGEVLIRCNNILYIRGAE 78
LGE+LIRCNN+LY+ G +
Sbjct: 61 LGEILIRCNNVLYVGGVD 78
>gi|51468014|ref|NP_001003881.1| small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|318104944|ref|NP_001188176.1| small nuclear ribonucleoprotein f [Ictalurus punctatus]
gi|348521200|ref|XP_003448114.1| PREDICTED: small nuclear ribonucleoprotein F-like [Oreochromis
niloticus]
gi|49619143|gb|AAT68156.1| small nuclear ribonucleoprotein F [Danio rerio]
gi|190336933|gb|AAI62363.1| Small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|190339458|gb|AAI62369.1| Small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|308321377|gb|ADO27840.1| small nuclear ribonucleoprotein f [Ictalurus furcatus]
gi|308323773|gb|ADO29022.1| small nuclear ribonucleoprotein f [Ictalurus punctatus]
Length = 86
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|226531954|ref|NP_001151866.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195650409|gb|ACG44672.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935831|gb|AFW70382.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 107
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 60/78 (76%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG L S D YMN QLA+TEE IDG +G LGE+
Sbjct: 25 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEI 84
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN++Y+RG E E
Sbjct: 85 LIRCNNVMYLRGVPEDAE 102
>gi|380815854|gb|AFE79801.1| small nuclear ribonucleoprotein F [Macaca mulatta]
Length = 86
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPHNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|209736642|gb|ACI69190.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|303661867|gb|ADM16052.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 67/84 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG VS D YMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYPVSVDSYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
L+RCNN+L+IRG EE +E+GEM++
Sbjct: 63 LVRCNNVLFIRGVEEEEEDGEMKD 86
>gi|410342317|gb|JAA40105.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
Length = 123
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 62/77 (80%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 36 VTMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 95
Query: 61 LGEVLIRCNNILYIRGA 77
LGEVLIRCNN+LYIRG
Sbjct: 96 LGEVLIRCNNVLYIRGV 112
>gi|226531376|ref|NP_001150516.1| small nuclear ribonucleoprotein F [Zea mays]
gi|194696080|gb|ACF82124.1| unknown [Zea mays]
gi|195609436|gb|ACG26548.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195622854|gb|ACG33257.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195639814|gb|ACG39375.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413926377|gb|AFW66309.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935832|gb|AFW70383.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935833|gb|AFW70384.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 86
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 60/78 (76%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG L S D YMN QLA+TEE IDG +G LGE+
Sbjct: 4 VPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN++Y+RG E E
Sbjct: 64 LIRCNNVMYLRGVPEDAE 81
>gi|432943738|ref|XP_004083261.1| PREDICTED: small nuclear ribonucleoprotein F-like [Oryzias
latipes]
Length = 86
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
L+RCNN+LYIRG
Sbjct: 63 LVRCNNVLYIRGV 75
>gi|17557029|ref|NP_498708.1| Protein SNR-5 [Caenorhabditis elegans]
gi|466158|sp|P34659.1|RUXF_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|351020571|emb|CCD62546.1| Protein SNR-5 [Caenorhabditis elegans]
Length = 85
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 62/82 (75%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK V+CKLKWG EYKG+LV+ D YMN QLA EE IDG+ G
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGE+LIRCNN+LY+ G + +E
Sbjct: 61 LGEILIRCNNVLYVGGVDGENE 82
>gi|384493309|gb|EIE83800.1| small nuclear ribonucleoprotein F [Rhizopus delemar RA 99-880]
Length = 88
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 64/84 (76%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK V KLKWG EY+G LVS D YMN QLA+TEE +G G LGEV
Sbjct: 4 VPVNPKPFLNDLTGKPVSVKLKWGGEYQGYLVSVDNYMNLQLANTEEFQNGVSVGTLGEV 63
Query: 65 LIRCNNILYIRGAEEGDEEGEMRE 88
LIRCNN+LYIRGAE+ D + E ++
Sbjct: 64 LIRCNNVLYIRGAEDDDTKMETQD 87
>gi|74189295|dbj|BAE22683.1| unnamed protein product [Mus musculus]
Length = 86
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYI+G
Sbjct: 63 LIRCNNVLYIKGV 75
>gi|195639214|gb|ACG39075.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 86
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 60/78 (76%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK +I KLKWG EYKG L S D YMN QLA+TEE IDG +G LGE+
Sbjct: 4 VPVNPKPFLNNLTGKPIIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN++Y+RG E E
Sbjct: 64 LIRCNNVMYLRGVPEDAE 81
>gi|356562363|ref|XP_003549441.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine
max]
Length = 88
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE I+G TG LGE+
Sbjct: 4 IPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEI 63
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LY+RG
Sbjct: 64 LIRCNNVLYLRGV 76
>gi|255626597|gb|ACU13643.1| unknown [Glycine max]
Length = 88
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK VI KLKWG EYKG LVS D YMN QLA+TEE I+G TG LGE+
Sbjct: 4 IPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEI 63
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LY+RG
Sbjct: 64 LIRCNNVLYLRGV 76
>gi|145350487|ref|XP_001419636.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579868|gb|ABO97929.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 79
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 58/74 (78%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTGK V KLKWG EY+G LVSTD YMN QLASTEE +DG G LGEVL
Sbjct: 4 PINPKPFLASLTGKKVAVKLKWGMEYRGFLVSTDAYMNLQLASTEEYVDGERQGALGEVL 63
Query: 66 IRCNNILYIRGAEE 79
IRCNN++Y++ A+E
Sbjct: 64 IRCNNVMYLKAADE 77
>gi|198432767|ref|XP_002124025.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
F [Ciona intestinalis]
Length = 87
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MST LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE ++G +G
Sbjct: 1 MST-LPMNPKPFLNGLTGKPVLVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVEGALSGH 59
Query: 61 LGEVLIRCNNILYIRGA 77
LGE+LIRCNN+LYI+G
Sbjct: 60 LGEILIRCNNVLYIKGV 76
>gi|395817616|ref|XP_003782261.1| PREDICTED: small nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 86
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYK LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKDYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|193657221|ref|XP_001948152.1| PREDICTED: small nuclear ribonucleoprotein F-like [Acyrthosiphon
pisum]
Length = 89
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKP+LN L GK++I KLKWGHEYKG LVSTD YMN QLAS E ++G LGE+
Sbjct: 4 MPVNPKPYLNGLMGKTIIVKLKWGHEYKGFLVSTDNYMNIQLASATEFVEGSEPALLGEI 63
Query: 65 LIRCNNILYIRGAEEGDEE--GEMRE 88
+IRCNN+LYIR ++ +EE EM+E
Sbjct: 64 MIRCNNVLYIRSVDDENEEADAEMKE 89
>gi|405969415|gb|EKC34388.1| Small nuclear ribonucleoprotein F [Crassostrea gigas]
Length = 82
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 68/81 (83%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG TG LGEVLIR
Sbjct: 2 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGAQTGNLGEVLIR 61
Query: 68 CNNILYIRGAEEGDEEGEMRE 88
CNN+LYIRG EE DEEGEM++
Sbjct: 62 CNNVLYIRGVEEEDEEGEMKD 82
>gi|432118939|gb|ELK38247.1| Small nuclear ribonucleoprotein F [Myotis davidii]
Length = 86
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 59/73 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN Q A+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQPANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>gi|355721060|gb|AES07139.1| small nuclear ribonucleoprotein polypeptide F [Mustela putorius
furo]
Length = 95
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 58/70 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 26 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 85
Query: 65 LIRCNNILYI 74
LIRCNN+LYI
Sbjct: 86 LIRCNNVLYI 95
>gi|225715690|gb|ACO13691.1| Small nuclear ribonucleoprotein F [Esox lucius]
Length = 86
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS D YMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
L+RCNN+LYIRG
Sbjct: 63 LVRCNNVLYIRGV 75
>gi|221221134|gb|ACM09228.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 86
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS D YMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
L+RCNN+LYIRG
Sbjct: 63 LVRCNNVLYIRGV 75
>gi|393215596|gb|EJD01087.1| small nuclear ribonucleo protein SmF [Fomitiporia mediterranea
MF3/22]
Length = 85
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 58/77 (75%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFL LTGKSV +LKWG EYKG LVSTDGYMN QLA+TEE DG G
Sbjct: 1 MSGVTPVNPKPFLQELTGKSVCVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGQSNGA 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEV IRCNN+LYIR A
Sbjct: 61 LGEVFIRCNNVLYIREA 77
>gi|196008042|ref|XP_002113887.1| hypothetical protein TRIADDRAFT_26794 [Trichoplax adhaerens]
gi|190584291|gb|EDV24361.1| hypothetical protein TRIADDRAFT_26794, partial [Trichoplax
adhaerens]
Length = 81
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 62/80 (77%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK V+ KLKWG +YKG LVS D YMN QLA+TEE ++G TG LGEV
Sbjct: 2 VPINPKPFLNGLTGKPVLVKLKWGMDYKGFLVSVDNYMNLQLANTEEYVEGALTGNLGEV 61
Query: 65 LIRCNNILYIRGAEEGDEEG 84
LIRCNN+LY+R +E D E
Sbjct: 62 LIRCNNVLYVREIDEEDGEA 81
>gi|221220004|gb|ACM08663.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 90
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 58/73 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS D YMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
L+RCNN+LYIRG
Sbjct: 63 LVRCNNVLYIRGV 75
>gi|336373399|gb|EGO01737.1| hypothetical protein SERLA73DRAFT_132214 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386230|gb|EGO27376.1| hypothetical protein SERLADRAFT_382079 [Serpula lacrymans var.
lacrymans S7.9]
Length = 80
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 58/77 (75%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MST P NPKPF+ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G
Sbjct: 1 MSTVNPVNPKPFMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGA 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEV IRCNN+LYIR A
Sbjct: 61 LGEVFIRCNNVLYIREA 77
>gi|390601284|gb|EIN10678.1| small nuclear ribonucleo protein SmF, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 80
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 59/77 (76%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS+ P NPKPF+ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEEI DG G
Sbjct: 1 MSSVTPVNPKPFMQELTGKLVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEIQDGVSNGT 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEV IRCNN+LYIR A
Sbjct: 61 LGEVFIRCNNVLYIREA 77
>gi|170088114|ref|XP_001875280.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650480|gb|EDR14721.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 82
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 57/77 (74%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ P NPKPFL LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G
Sbjct: 1 MAAVNPVNPKPFLQELTGKPVFVRLKWGLEYKGFLVSTDGYMNLQLANTEEYQDGQSNGA 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEV IRCNN+LYIR A
Sbjct: 61 LGEVFIRCNNVLYIREA 77
>gi|326911717|ref|XP_003202202.1| PREDICTED: small nuclear ribonucleoprotein F-like, partial
[Meleagris gallopavo]
Length = 82
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 58/70 (82%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEVLIR
Sbjct: 2 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIR 61
Query: 68 CNNILYIRGA 77
CNN+LYIRG
Sbjct: 62 CNNVLYIRGV 71
>gi|313235935|emb|CBY25078.1| unnamed protein product [Oikopleura dioica]
Length = 88
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 59/78 (75%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK V KLKWG EYKG L++ DGYMN QL ++EE IDG G
Sbjct: 1 MSAVAPVNPKPFLNSLTGKPVQVKLKWGMEYKGYLMAVDGYMNLQLGNSEEYIDGALAGH 60
Query: 61 LGEVLIRCNNILYIRGAE 78
LGE+LIRCNN+LYIRG +
Sbjct: 61 LGEILIRCNNVLYIRGVD 78
>gi|443924091|gb|ELU43165.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 81
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 57/77 (74%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T P NPKPFL LTGK V +LKWG EYKG LVSTD YMN QLA+TEE DG G
Sbjct: 1 MATVAPVNPKPFLQELTGKPVFVRLKWGLEYKGYLVSTDSYMNLQLANTEEFEDGKSNGA 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEV IRCNN+LYIR A
Sbjct: 61 LGEVFIRCNNVLYIREA 77
>gi|58266046|ref|XP_570179.1| mRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110882|ref|XP_775905.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258571|gb|EAL21258.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226412|gb|AAW42872.1| mRNA processing-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 87
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFL LTGK V +LKWG EY+G LVSTDGYMN QLA+TEEI +G G
Sbjct: 1 MSAIAPVNPKPFLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGA 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LYIR E D G M +
Sbjct: 61 LGEVLIRCNNVLYIR--EFKDRAGGMDQ 86
>gi|299747331|ref|XP_001836960.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
gi|298407471|gb|EAU84577.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
Length = 81
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 56/76 (73%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G LGEV
Sbjct: 5 PVNPKPFLQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVF 64
Query: 66 IRCNNILYIRGAEEGD 81
IRCNN+LYIR A D
Sbjct: 65 IRCNNVLYIREAPPED 80
>gi|443897316|dbj|GAC74657.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 82
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 57/75 (76%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS+ P NPKPFL L TGK V+ +LKWG EYKG LVSTD YMN QLA+TEE DG G
Sbjct: 1 MSSFQPVNPKPFLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEEFQDGKSNGM 60
Query: 61 LGEVLIRCNNILYIR 75
LGEV IRCNN+LY+R
Sbjct: 61 LGEVFIRCNNVLYLR 75
>gi|343427163|emb|CBQ70691.1| probable Small nuclear ribonucleoprotein F [Sporisorium reilianum
SRZ2]
Length = 82
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 57/75 (76%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS+ P NPKPFL L TGK V+ +LKWG EYKG LVSTD YMN QLA+TEE DG G
Sbjct: 1 MSSFQPVNPKPFLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEEFQDGKSNGM 60
Query: 61 LGEVLIRCNNILYIR 75
LGEV IRCNN+LY+R
Sbjct: 61 LGEVFIRCNNVLYLR 75
>gi|392568679|gb|EIW61853.1| small nuclear ribonucleo protein SmF [Trametes versicolor
FP-101664 SS1]
Length = 79
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 59/79 (74%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKP++ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G
Sbjct: 1 MSAVNPVNPKPYMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGA 60
Query: 61 LGEVLIRCNNILYIRGAEE 79
LGEV IRCNN+LYIR A++
Sbjct: 61 LGEVFIRCNNVLYIREAKD 79
>gi|171690156|ref|XP_001910003.1| hypothetical protein [Podospora anserina S mat+]
gi|170945026|emb|CAP71137.1| unnamed protein product [Podospora anserina S mat+]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS+ +P NP+PFL L K VI +LKW EYKG LVS D YMN QLA+TEE I+ TG
Sbjct: 1 MSSFVPVNPRPFLQDLVNKDVIVRLKWNETEYKGRLVSIDSYMNIQLANTEEFIEQKFTG 60
Query: 60 KLGEVLIRCNNILYIRGAEEGDEEGEMR 87
LG+VLIRCNN+LY+RGAE GD+ G+ +
Sbjct: 61 TLGQVLIRCNNVLYVRGAEGGDKGGDTK 88
>gi|402217602|gb|EJT97682.1| small nuclear ribo protein F [Dacryopinax sp. DJM-731 SS1]
Length = 89
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 56/72 (77%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPF+ LTGK V+ +LKWG EYKG LVSTDG+MN QLA+TEE DG G LGEV
Sbjct: 10 PVNPKPFIQDLTGKQVLVRLKWGFEYKGYLVSTDGFMNLQLANTEEFQDGKSNGALGEVF 69
Query: 66 IRCNNILYIRGA 77
IRCNN+LYIR A
Sbjct: 70 IRCNNVLYIREA 81
>gi|392592920|gb|EIW82246.1| small nuclear ribo protein F, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 77
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 55/72 (76%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G LGEV
Sbjct: 3 PVNPKPFLQDLTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVF 62
Query: 66 IRCNNILYIRGA 77
IRCNN+LYIR A
Sbjct: 63 IRCNNVLYIREA 74
>gi|167516518|ref|XP_001742600.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779224|gb|EDQ92838.1| predicted protein [Monosiga brevicollis MX1]
Length = 109
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 60/79 (75%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFL LTGK ++ KLKWG EYKG+L ++D YMN QL +TEE +DG TG LGEV
Sbjct: 31 VPVNPKPFLAGLTGKPILVKLKWGMEYKGVLKASDQYMNLQLLNTEEYVDGSMTGALGEV 90
Query: 65 LIRCNNILYIRGAEEGDEE 83
LIRCNN+LYIR A+ +
Sbjct: 91 LIRCNNVLYIRSADAAQQS 109
>gi|393246346|gb|EJD53855.1| mRNA processing-related protein [Auricularia delicata TFB-10046
SS5]
Length = 81
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 57/80 (71%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFL LTGKSV +LKWG EY+G LVSTD YMN QLA+ EE DG G
Sbjct: 1 MSAVAPVNPKPFLQDLTGKSVWVRLKWGLEYRGFLVSTDAYMNLQLANAEEYQDGKSNGT 60
Query: 61 LGEVLIRCNNILYIRGAEEG 80
LGE+ IRCNN+LYIR +E
Sbjct: 61 LGEIFIRCNNVLYIREDKEA 80
>gi|388851890|emb|CCF54484.1| probable Small nuclear ribonucleoprotein F [Ustilago hordei]
Length = 82
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 58/75 (77%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS+ P NPKPFL L TGK V+ +LKWG EYKG LVSTD YMN QLA+TEE+ +G G
Sbjct: 1 MSSFQPVNPKPFLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEELQEGKSNGM 60
Query: 61 LGEVLIRCNNILYIR 75
LGEV IRCNN+LY+R
Sbjct: 61 LGEVFIRCNNVLYLR 75
>gi|321257666|ref|XP_003193669.1| mRNA processing-related protein [Cryptococcus gattii WM276]
gi|317460139|gb|ADV21882.1| mRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 84
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 58/75 (77%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ P NPKPFL LTGK V +LKWG EY+G LVSTDGYMN QLA+TEEI +G G
Sbjct: 1 MAAVAPVNPKPFLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGA 60
Query: 61 LGEVLIRCNNILYIR 75
LGEVLIRCNN+LYIR
Sbjct: 61 LGEVLIRCNNVLYIR 75
>gi|405120174|gb|AFR94945.1| small nuclear riboprotein F [Cryptococcus neoformans var. grubii
H99]
Length = 84
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 58/75 (77%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFL LTGK V +LKWG EY+G LVSTDGYMN QLA+TEEI +G G
Sbjct: 1 MSAIAPVNPKPFLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGA 60
Query: 61 LGEVLIRCNNILYIR 75
LGEVLIRCNN+LYIR
Sbjct: 61 LGEVLIRCNNVLYIR 75
>gi|395330543|gb|EJF62926.1| small nuclear ribonucleo protein SmF [Dichomitus squalens
LYAD-421 SS1]
Length = 87
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 55/74 (74%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPF+ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G
Sbjct: 1 MSAVNPVNPKPFMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGA 60
Query: 61 LGEVLIRCNNILYI 74
LGEV IRCNN+LYI
Sbjct: 61 LGEVFIRCNNVLYI 74
>gi|401403798|ref|XP_003881578.1| hypothetical protein NCLIV_013380 [Neospora caninum Liverpool]
gi|325115991|emb|CBZ51545.1| hypothetical protein NCLIV_013380 [Neospora caninum Liverpool]
Length = 87
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 63/87 (72%), Gaps = 3/87 (3%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T P NPKPFL LTG+ V+ KLKWG EYKG L S D YMN QL +TEE +DG+ G
Sbjct: 1 MATVTPVNPKPFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGNFKGH 60
Query: 61 LGEVLIRCNNILYIR---GAEEGDEEG 84
LGEVL+RCNN+LY+R G +E DEE
Sbjct: 61 LGEVLLRCNNVLYLRQVKGEDEDDEEA 87
>gi|325190943|emb|CCA25428.1| small nuclear ribonucleoprotein F putative [Albugo laibachii Nc14]
Length = 134
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 60/79 (75%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
L NPKPFL LTGK+V+ +LKWG EYKG+LVS D YMN QLA +EE ++G G LGEV
Sbjct: 43 LILNPKPFLTGLTGKTVVVRLKWGMEYKGVLVSVDSYMNLQLAGSEEYVNGDLAGNLGEV 102
Query: 65 LIRCNNILYIRGAEEGDEE 83
LIRCNN+LY+RG E + +
Sbjct: 103 LIRCNNVLYLRGLREDESD 121
>gi|237843565|ref|XP_002371080.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|211968744|gb|EEB03940.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|221504941|gb|EEE30606.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
VEG]
Length = 87
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 61/85 (71%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T P NPKPFL LTG+ V+ KLKWG EYKG L S D YMN QL +TEE +DG G
Sbjct: 1 MATVTPVNPKPFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGSFKGH 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGE 85
LGEVL+RCNN+LY+R + DEE E
Sbjct: 61 LGEVLLRCNNVLYLRQVKGEDEEDE 85
>gi|298710621|emb|CBJ32049.1| Small nuclear ribonucleoprotein SmF [Ectocarpus siliculosus]
Length = 101
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKG-ILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFLN LTGK V+ KLKWG EYKG LVS D YMN L STEE +DG G LG+V
Sbjct: 4 PVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDV 63
Query: 65 LIRCNNILYIRGAEE 79
LIRCNN+LY+RG EE
Sbjct: 64 LIRCNNVLYLRGVEE 78
>gi|302697029|ref|XP_003038193.1| hypothetical protein SCHCODRAFT_39758 [Schizophyllum commune
H4-8]
gi|300111890|gb|EFJ03291.1| hypothetical protein SCHCODRAFT_39758, partial [Schizophyllum
commune H4-8]
Length = 71
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 53/69 (76%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G LGEV
Sbjct: 3 PVNPKPFLQELTGKPVFVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGQSNGTLGEVF 62
Query: 66 IRCNNILYI 74
IRCNN+LYI
Sbjct: 63 IRCNNVLYI 71
>gi|403416704|emb|CCM03404.1| predicted protein [Fibroporia radiculosa]
Length = 88
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 55/74 (74%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPF+ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G
Sbjct: 1 MSAVNPVNPKPFIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGA 60
Query: 61 LGEVLIRCNNILYI 74
LGEV IRCNN+LYI
Sbjct: 61 LGEVFIRCNNVLYI 74
>gi|452822853|gb|EME29869.1| small nuclear ribonucleoprotein F isoform 2 [Galdieria
sulphuraria]
gi|452822854|gb|EME29870.1| small nuclear ribonucleoprotein F isoform 1 [Galdieria
sulphuraria]
Length = 90
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 57/74 (77%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFL+ L GK +I KLKWG EY+G+LVS D YMN QL TEE I+G GKLG+V
Sbjct: 9 FPINPKPFLHDLVGKPLIVKLKWGLEYRGLLVSLDSYMNLQLTQTEEWINGKMAGKLGDV 68
Query: 65 LIRCNNILYIRGAE 78
LIRCNN+LY+RG E
Sbjct: 69 LIRCNNVLYVRGGE 82
>gi|301090416|ref|XP_002895423.1| small nuclear ribonucleoprotein F, putative [Phytophthora
infestans T30-4]
gi|262098675|gb|EEY56727.1| small nuclear ribonucleoprotein F, putative [Phytophthora
infestans T30-4]
Length = 98
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
L NPKPFL LTGK V+ +LKWG EYKG+L+S D YMN QLA+TEE I+G TG LGE
Sbjct: 4 LILNPKPFLTNLTGKPVVARLKWGMEYKGVLLSVDSYMNLQLANTEEYINGELTGNLGET 63
Query: 65 LIRCNNILYIRG 76
L+RCNN+L+IRG
Sbjct: 64 LVRCNNVLFIRG 75
>gi|348673489|gb|EGZ13308.1| hypothetical protein PHYSODRAFT_316641 [Phytophthora sojae]
Length = 98
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
L NPKPFL LTGK V+ +LKWG EYKG+L+S D YMN QLA+TEE I+G TG LGE
Sbjct: 4 LILNPKPFLTNLTGKPVVARLKWGMEYKGVLLSVDSYMNLQLANTEEYINGELTGNLGET 63
Query: 65 LIRCNNILYIRG 76
L+RCNN+L+IRG
Sbjct: 64 LVRCNNVLFIRG 75
>gi|339233708|ref|XP_003381971.1| ribonucleo protein F [Trichinella spiralis]
gi|316979158|gb|EFV61986.1| ribonucleo protein F [Trichinella spiralis]
Length = 82
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 55/72 (76%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTGK VI KLKWG EYKG L+STD YMN QLA TEE +G G LGEVL
Sbjct: 1 PINPKPFLINLTGKPVIVKLKWGPEYKGYLISTDNYMNVQLAHTEEYTNGTLAGNLGEVL 60
Query: 66 IRCNNILYIRGA 77
IRCNN+LYIRG
Sbjct: 61 IRCNNVLYIRGV 72
>gi|389747075|gb|EIM88254.1| small nuclear ribonucleo protein SmF, partial [Stereum hirsutum
FP-91666 SS1]
Length = 84
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 54/69 (78%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPF+ LTGK V KLKWG EYKG LVSTDGYMN QLA+TEE +G TG LGEV
Sbjct: 3 PVNPKPFMQELTGKPVFVKLKWGLEYKGFLVSTDGYMNLQLANTEEFQNGESTGTLGEVF 62
Query: 66 IRCNNILYI 74
IRCNN+LYI
Sbjct: 63 IRCNNVLYI 71
>gi|345795922|ref|XP_003434099.1| PREDICTED: small nuclear ribonucleoprotein F-like [Canis lupus
familiaris]
Length = 126
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 56/71 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPF N LTGK V KLKWG EY+G L S DGYMN QLA+TEE IDG +G LGEV
Sbjct: 43 LPLNPKPFPNGLTGKPVRVKLKWGMEYQGYLESVDGYMNMQLANTEEYIDGALSGHLGEV 102
Query: 65 LIRCNNILYIR 75
LIRCNN+LYIR
Sbjct: 103 LIRCNNVLYIR 113
>gi|320165888|gb|EFW42787.1| hypothetical protein CAOG_07919 [Capsaspora owczarzaki ATCC
30864]
Length = 85
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 60/79 (75%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MST P NPKPFL L+GK +I KLKWG EY G L+++DGYMN QL +T E +DG T +
Sbjct: 1 MSTLNPINPKPFLASLSGKPIIVKLKWGQEYHGTLLASDGYMNLQLGNTIEHVDGEETHR 60
Query: 61 LGEVLIRCNNILYIRGAEE 79
LGEVLIRCNN+LY++ EE
Sbjct: 61 LGEVLIRCNNVLYVKAGEE 79
>gi|401885054|gb|EJT49185.1| mRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 129
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 56/77 (72%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NP+PFL LTGK+V KLKWG EY+G LVSTDGY N QL EE+ +G G+
Sbjct: 1 MSAVKPVNPRPFLQDLTGKTVTVKLKWGLEYRGFLVSTDGYFNLQLTGAEEMENGKSNGQ 60
Query: 61 LGEVLIRCNNILYIRGA 77
LGEV IRCNN+LYIR A
Sbjct: 61 LGEVFIRCNNVLYIRMA 77
>gi|412991017|emb|CCO18389.1| predicted protein [Bathycoccus prasinos]
Length = 92
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKW-GHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NPKPFL LTGK V+ KLKW G YKG LVSTD YMN QLA+T EIIDG TG LGE
Sbjct: 6 VPINPKPFLQSLTGKKVLVKLKWSGMAYKGFLVSTDAYMNVQLANTMEIIDGEETGNLGE 65
Query: 64 VLIRCNNILYIRGA 77
VLIRCNN+L+I G
Sbjct: 66 VLIRCNNVLWISGV 79
>gi|221484764|gb|EEE23058.1| hypothetical protein TGGT1_039230 [Toxoplasma gondii GT1]
Length = 117
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 58/80 (72%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTG+ V+ KLKWG EYKG L S D YMN QL +TEE +DG G LGEVL
Sbjct: 36 PVNPKPFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGSFKGHLGEVL 95
Query: 66 IRCNNILYIRGAEEGDEEGE 85
+RCNN+LY+R + DEE E
Sbjct: 96 LRCNNVLYLRQVKGEDEEDE 115
>gi|242208547|ref|XP_002470124.1| predicted protein [Postia placenta Mad-698-R]
gi|220730876|gb|EED84727.1| predicted protein [Postia placenta Mad-698-R]
Length = 71
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 53/69 (76%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPF+ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G LGEV
Sbjct: 3 PVNPKPFIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVF 62
Query: 66 IRCNNILYI 74
IRCNN+LYI
Sbjct: 63 IRCNNVLYI 71
>gi|449550066|gb|EMD41031.1| hypothetical protein CERSUDRAFT_37798, partial [Ceriporiopsis
subvermispora B]
Length = 77
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 53/69 (76%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPF+ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G LGEV
Sbjct: 3 PVNPKPFIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVF 62
Query: 66 IRCNNILYI 74
IRCNN+LYI
Sbjct: 63 IRCNNVLYI 71
>gi|392580438|gb|EIW73565.1| hypothetical protein TREMEDRAFT_67422 [Tremella mesenterica DSM
1558]
Length = 86
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 59/79 (74%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFL LTGK V KLKWG EY+G LVSTDGYMN QLA+TEE+ +G G
Sbjct: 1 MSAIAPVNPKPFLQELTGKIVDVKLKWGLEYRGYLVSTDGYMNLQLANTEEMENGKSNGT 60
Query: 61 LGEVLIRCNNILYIRGAEE 79
LGEV IRCNN+LY+ A++
Sbjct: 61 LGEVFIRCNNVLYLGEAKD 79
>gi|320589552|gb|EFX02013.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 119
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L GK V +LKWG EYKG LVS D YMN QL+ TEE IDG TG+LG+
Sbjct: 38 MPVNPRPMLQDLVGKPVSVRLKWGETEYKGALVSIDSYMNLQLSDTEEFIDGESTGQLGQ 97
Query: 64 VLIRCNNILYIRGAE 78
VLIRCNN+L+IRG E
Sbjct: 98 VLIRCNNVLWIRGDE 112
>gi|367035568|ref|XP_003667066.1| hypothetical protein MYCTH_2316657 [Myceliophthora thermophila
ATCC 42464]
gi|347014339|gb|AEO61821.1| hypothetical protein MYCTH_2316657 [Myceliophthora thermophila
ATCC 42464]
Length = 91
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFL L K VI +LKWG EYKG LVS D YMN QL++TEE ID TG LG+
Sbjct: 4 VPVNPRPFLQDLVNKDVIVRLKWGETEYKGRLVSIDSYMNIQLSNTEEFIDRKFTGALGQ 63
Query: 64 VLIRCNNILYIRGAE---EGDEEGEM 86
VLIRCNN+LY++ A+ EGD++ +M
Sbjct: 64 VLIRCNNVLYVKAADNAGEGDKDTKM 89
>gi|225680065|gb|EEH18349.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 136
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFL L + +I +LKWGH EYKG LVS D YMN QL++TEE IDG TG LG+
Sbjct: 51 IPMNPRPFLQSLINEDIIVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQ 110
Query: 64 VLIRCNNILYIRGAEE 79
VLIRCNN+L+I A++
Sbjct: 111 VLIRCNNVLWISAAKD 126
>gi|340522693|gb|EGR52926.1| predicted protein [Trichoderma reesei QM6a]
Length = 90
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K+V+ +LKWG EYKG LVS D YMN QLA+TEE ++ TG+LG+
Sbjct: 4 VPVNPRPMLQDLVDKTVLVRLKWGETEYKGRLVSIDSYMNLQLANTEEYLNEKLTGELGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEMR 87
VLIRCNN+LYIRGA++ D +++
Sbjct: 64 VLIRCNNVLYIRGADQKDSSADVK 87
>gi|224003119|ref|XP_002291231.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973007|gb|EED91338.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 112
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
NPKPFL LTGK V +LKWG EY+G L S+D YMN QL TEE IDG G LGEVLI
Sbjct: 30 VNPKPFLADLTGKHVRVRLKWGQEYQGKLASSDAYMNLQLEETEEFIDGQFAGTLGEVLI 89
Query: 67 RCNNILYIRGAE 78
RCNN+LY++ A+
Sbjct: 90 RCNNVLYVKAAD 101
>gi|116204791|ref|XP_001228206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176407|gb|EAQ83875.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 90
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFL L K V+ +LKWG EYKG LVS D YMN QL++TEE ID TG LG+
Sbjct: 4 VPVNPRPFLQDLVNKDVVVRLKWGETEYKGRLVSIDSYMNIQLSNTEEFIDRKFTGALGQ 63
Query: 64 VLIRCNNILYIRGA--EEGDEEGEM 86
VLIRCNN+LY+ A +EGD + +M
Sbjct: 64 VLIRCNNVLYVTAATDKEGDRDTKM 88
>gi|428171321|gb|EKX40239.1| hypothetical protein GUITHDRAFT_43352, partial [Guillardia theta
CCMP2712]
Length = 70
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 54/70 (77%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTG SV+ KLKWG EYKG+L STD YMN QL +T+E I+ G LGEVL
Sbjct: 1 PVNPKPFLADLTGLSVVVKLKWGMEYKGVLKSTDNYMNIQLENTQEFIEDQFQGDLGEVL 60
Query: 66 IRCNNILYIR 75
IRCNN+LY+R
Sbjct: 61 IRCNNVLYVR 70
>gi|358339525|dbj|GAA47572.1| small nuclear ribonucleoprotein F [Clonorchis sinensis]
Length = 83
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPKPFL+ +TGK VI KLKWG EYKG LVS D YMN QL ST+E ID TG LGEVLIR
Sbjct: 7 NPKPFLSSITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIR 66
Query: 68 CNNILYIRGAEEGDEEGEM 86
CNN+LYIR E DE +M
Sbjct: 67 CNNVLYIR--ECDDEFSDM 83
>gi|358386686|gb|EHK24281.1| hypothetical protein TRIVIDRAFT_30418 [Trichoderma virens Gv29-8]
gi|358399880|gb|EHK49217.1| hypothetical protein TRIATDRAFT_143930 [Trichoderma atroviride
IMI 206040]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K+V+ +LKWG EYKG LVS D YMN QL++TEE ++ TG+LG+
Sbjct: 4 VPVNPRPMLQDLVDKTVLVRLKWGETEYKGRLVSIDSYMNLQLSNTEEYLNDKLTGELGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEMR 87
VLIRCNN+LYIRGA++ + G+ R
Sbjct: 64 VLIRCNNVLYIRGADQKESGGDTR 87
>gi|219118381|ref|XP_002179965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408222|gb|EEC48156.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 87
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 61/82 (74%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
NPKPFL LTGK+V KLKWG EY+G+L + D YMN QL++TEE +DG G LG+VLI
Sbjct: 6 VNPKPFLVDLTGKTVKVKLKWGMEYQGVLAAADAYMNLQLSATEEFLDGQFAGFLGDVLI 65
Query: 67 RCNNILYIRGAEEGDEEGEMRE 88
RCNN+LY++ A ++E M+E
Sbjct: 66 RCNNVLYVQAAPAEEDEEAMKE 87
>gi|60691036|gb|AAX30542.1| SJCHGC04779 protein [Schistosoma japonicum]
gi|226487226|emb|CAX75478.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487228|emb|CAX75479.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487230|emb|CAX75480.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487232|emb|CAX75481.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487234|emb|CAX75482.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
Length = 84
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 56/72 (77%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPKPFL+ +TGK VI KLKWG EYKG LVS D YMN QL ST+E ID TG LGEVLIR
Sbjct: 7 NPKPFLSGITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIR 66
Query: 68 CNNILYIRGAEE 79
CNN+LYIR ++
Sbjct: 67 CNNVLYIRECDD 78
>gi|256052184|ref|XP_002569656.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|353230903|emb|CCD77320.1| putative small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma
mansoni]
Length = 84
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 56/72 (77%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPKPFL+ +TGK VI KLKWG EYKG LVS D YMN QL ST+E ID TG LGEVLIR
Sbjct: 7 NPKPFLSGITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIR 66
Query: 68 CNNILYIRGAEE 79
CNN+LYIR ++
Sbjct: 67 CNNVLYIRECDD 78
>gi|403172479|ref|XP_003331594.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375169870|gb|EFP87175.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 121
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 52/73 (71%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFL LTGK + KLKWG EYKG LVS D YMN QLA+TEE +G G
Sbjct: 1 MSVVHPVNPKPFLQDLTGKECVVKLKWGMEYKGYLVSVDNYMNLQLANTEEYQNGQSVGS 60
Query: 61 LGEVLIRCNNILY 73
LGEV IRCNN+LY
Sbjct: 61 LGEVFIRCNNVLY 73
>gi|301781869|ref|XP_002926350.1| PREDICTED: hypothetical protein LOC100471390 [Ailuropoda
melanoleuca]
Length = 167
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 54/74 (72%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
L NPKPFLN LTGK + + KWG EYKG LVS DGYMN QLA+ EE IDG +G L EV
Sbjct: 84 LLLNPKPFLNGLTGKPITVEPKWGMEYKGYLVSVDGYMNMQLANIEEYIDGALSGHLAEV 143
Query: 65 LIRCNNILYIRGAE 78
LIR NN LYIRG +
Sbjct: 144 LIRHNNALYIRGVK 157
>gi|397615466|gb|EJK63449.1| hypothetical protein THAOC_15885, partial [Thalassiosira oceanica]
Length = 184
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 52/72 (72%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
NPKPFL LTGK V +LKWG EY+G L S+D YMN QL TEE I+G G LGEVLI
Sbjct: 104 VNPKPFLADLTGKHVRVRLKWGQEYQGKLASSDAYMNLQLEDTEEFIEGQFAGTLGEVLI 163
Query: 67 RCNNILYIRGAE 78
RCNN+LY++ +
Sbjct: 164 RCNNVLYVKATD 175
>gi|388580904|gb|EIM21216.1| small nuclear ribonucleo protein SmF [Wallemia sebi CBS 633.66]
Length = 90
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NP+PFLN LTGK+V +LKWG +YKG LVS D YMN QLA+TEE + G LGEV
Sbjct: 5 PVNPRPFLNDLTGKAVQVRLKWGLDYKGYLVSVDNYMNLQLANTEEFQNDKSNGALGEVF 64
Query: 66 IRCNNILYIRGAEE 79
IRCNN+L+++ +++
Sbjct: 65 IRCNNVLWLKQSDD 78
>gi|440633409|gb|ELR03328.1| small nuclear ribonucleoprotein F [Geomyces destructans 20631-21]
Length = 91
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + V+ +LKWG EYKGILVS D YMN QL +TEE ID T LG+
Sbjct: 4 MPVNPRPMLQSLVNEEVVVRLKWGQTEYKGILVSIDSYMNIQLTNTEEFIDQKLTAALGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEG 84
VLIRCNN+L+I+ A G E G
Sbjct: 64 VLIRCNNVLWIQAAPTGKENG 84
>gi|400598516|gb|EJP66225.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 86
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K+V +LKWG EYKG LVS D YMN QLA+T+E I T LG+
Sbjct: 4 VPVNPRPMLQELVDKTVSVRLKWGETEYKGKLVSLDAYMNLQLANTQEYISDKFTADLGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGE 85
VLIRCNN+L+IRGAE+GD + E
Sbjct: 64 VLIRCNNVLWIRGAEDGDVKME 85
>gi|258597322|ref|XP_001347951.2| small nuclear ribonucleoprotein F, putative [Plasmodium
falciparum 3D7]
gi|254832663|gb|AAN35864.2| small nuclear ribonucleoprotein F, putative [Plasmodium
falciparum 3D7]
Length = 86
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 52/74 (70%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFLN L G VI KLKWG EYKGIL S DGYMN +L + EE I G G LGE+
Sbjct: 7 PLNPKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIF 66
Query: 66 IRCNNILYIRGAEE 79
+RCNNILYIR E
Sbjct: 67 LRCNNILYIREDNE 80
>gi|346324140|gb|EGX93737.1| small nuclear ribonucleoprotein SmF [Cordyceps militaris CM01]
Length = 86
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K+V +LKWG EYKG LVS D YMN QLA+T+E I T LG+
Sbjct: 4 VPVNPRPMLQELVDKTVSVRLKWGETEYKGKLVSLDAYMNLQLANTQEYIADKFTADLGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGE 85
VLIRCNN+L+IRGA++GD + E
Sbjct: 64 VLIRCNNVLWIRGADDGDTKME 85
>gi|281341398|gb|EFB16982.1| hypothetical protein PANDA_015984 [Ailuropoda melanoleuca]
Length = 86
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 54/74 (72%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
L NPKPFLN LTGK + + KWG EYKG LVS DGYMN QLA+ EE IDG +G L EV
Sbjct: 3 LLLNPKPFLNGLTGKPITVEPKWGMEYKGYLVSVDGYMNMQLANIEEYIDGALSGHLAEV 62
Query: 65 LIRCNNILYIRGAE 78
LIR NN LYIRG +
Sbjct: 63 LIRHNNALYIRGVK 76
>gi|429862333|gb|ELA36985.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 89
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K V+ +LKWG EYKG LVS D YMN QL+ EE ID TG LG+
Sbjct: 4 VPINPRPMLQDLVDKDVVIRLKWGDTEYKGKLVSIDSYMNIQLSGAEEYIDQKMTGALGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEMR 87
VLIRCNN+L+IRGA++G E G+++
Sbjct: 64 VLIRCNNVLWIRGAKQG-ENGDVK 86
>gi|380488855|emb|CCF37095.1| small nuclear ribonucleoprotein F [Colletotrichum higginsianum]
Length = 88
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + ++ +LKWG EYKG LVS D YMN QL+ EE ID TG LG+
Sbjct: 4 VPINPRPMLQDLVNQDIVVRLKWGETEYKGKLVSIDSYMNIQLSGAEEYIDQKLTGALGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEM 86
VLIRCNN+L+IRGA++G+ + +M
Sbjct: 64 VLIRCNNVLWIRGAKQGENDVKM 86
>gi|442754581|gb|JAA69450.1| Putative small nuclear ribonucleoprotein snrnp smf [Ixodes
ricinus]
Length = 86
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL-GEV 64
P NPKPFL +LTG+ VI KLKWG EYKGIL S D YMN Q+ EE G GKL G +
Sbjct: 9 PLNPKPFLTMLTGQLVIVKLKWGMEYKGILKSFDSYMNIQIDGAEEWERGVLKGKLDGTI 68
Query: 65 LIRCNNILYIRGAEE 79
LIRCNN+LYIRGAEE
Sbjct: 69 LIRCNNMLYIRGAEE 83
>gi|302907735|ref|XP_003049712.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730648|gb|EEU43999.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 89
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+P L L ++V+ +LKWG EYKG LVS D YMN QL+ TEE I TG LG+V
Sbjct: 5 PLNPRPMLQDLVSRTVLVRLKWGEVEYKGTLVSVDSYMNLQLSGTEEYIADKPTGSLGQV 64
Query: 65 LIRCNNILYIRGAEEG-DEEGEM 86
LIRCNN+L++RGA+EG D + M
Sbjct: 65 LIRCNNVLWVRGADEGKDADAAM 87
>gi|221056272|ref|XP_002259274.1| small nuclear ribonucleoprotein f [Plasmodium knowlesi strain H]
gi|193809345|emb|CAQ40047.1| small nuclear ribonucleoprotein f, putative [Plasmodium knowlesi
strain H]
Length = 86
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 54/80 (67%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFLN L G VI KLKWG EYKG L S D YMN +LA+ EE I G G LGE+
Sbjct: 7 PLNPKPFLNSLAGNRVIIKLKWGMEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIF 66
Query: 66 IRCNNILYIRGAEEGDEEGE 85
+RCNNILYIR +E + E
Sbjct: 67 LRCNNILYIREDKETENSSE 86
>gi|225558565|gb|EEH06849.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240275004|gb|EER38519.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325094349|gb|EGC47659.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 90
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
T +P NP+P L L + V+ +LKWGH EYKG LVS D YMN QL++TEE I+G TG L
Sbjct: 2 TFIPLNPRPMLQSLVNEDVLVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIEGKSTGSL 61
Query: 62 GEVLIRCNNILYIRGAE 78
G+VLIRCNN+L+I A+
Sbjct: 62 GQVLIRCNNVLWISAAK 78
>gi|409050244|gb|EKM59721.1| hypothetical protein PHACADRAFT_205939 [Phanerochaete carnosa
HHB-10118-sp]
Length = 69
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 50/68 (73%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MST P NPKPF+ LTGK V +LKWG EYKG LVSTDGYMN QLA+TEE DG G
Sbjct: 1 MSTVNPVNPKPFMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGA 60
Query: 61 LGEVLIRC 68
LGEV IRC
Sbjct: 61 LGEVFIRC 68
>gi|281211679|gb|EFA85841.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 85
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
M+ +PKPFL L GK V +LKWG EY+GIL S D YMN QLA+TEE IDG
Sbjct: 1 MNKVESLSPKPFLYELKGKKVAVRLKWGGMEYRGILASVDNYMNLQLAATEEWIDGAIID 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LGEVLIRCNN+LY+RG E+
Sbjct: 61 TLGEVLIRCNNVLYVRGVEQ 80
>gi|261193311|ref|XP_002623061.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
SLH14081]
gi|239588666|gb|EEQ71309.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
SLH14081]
gi|327358008|gb|EGE86865.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
ATCC 18188]
Length = 90
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + +I +LKWG EYKG LVS D YMN QL++TEE IDG TG LG+
Sbjct: 4 VPLNPRPMLQSLVNEDIIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQ 63
Query: 64 VLIRCNNILYIRGAE 78
VLIRCNN+L+I A+
Sbjct: 64 VLIRCNNVLWISAAK 78
>gi|310800295|gb|EFQ35188.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 89
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + V+ +LKWG EYKG LVS D YMN QL+ EE ID TG LG+
Sbjct: 4 VPINPRPMLQDLVNQDVVIRLKWGETEYKGKLVSIDSYMNVQLSGAEEYIDQKMTGALGQ 63
Query: 64 VLIRCNNILYIRGAEEGD 81
VLIRCNN+L+IRGA++G+
Sbjct: 64 VLIRCNNVLWIRGAKQGE 81
>gi|328870612|gb|EGG18985.1| adenosine deaminase acting on tRNA 1 [Dictyostelium fasciculatum]
Length = 639
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/77 (63%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+PKPFL L GK V +LKWG EY+GIL S D YMN QLA+TEE IDG LGEVLI
Sbjct: 563 SPKPFLYELKGKKVAVRLKWGGMEYRGILASVDNYMNLQLAATEEWIDGTMIDTLGEVLI 622
Query: 67 RCNNILYIRGAEEGDEE 83
RCNN+LYIRG E E+
Sbjct: 623 RCNNVLYIRGVEHEMEK 639
>gi|19112893|ref|NP_596101.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe 972h-]
gi|6094210|sp|O59734.1|RUXF_SCHPO RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|3130040|emb|CAA19017.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe]
Length = 78
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 53/70 (75%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFL L GK V+ +LKWG EYKG L S D YMN QL + EE++DG TG LGE+
Sbjct: 4 VPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEI 63
Query: 65 LIRCNNILYI 74
LIRCNN+L++
Sbjct: 64 LIRCNNVLWV 73
>gi|156098737|ref|XP_001615384.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium vivax Sal-1]
gi|148804258|gb|EDL45657.1| U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium
vivax]
Length = 86
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 52/74 (70%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFLN L G VI KLKWG EYKG L S D YMN +LA+ EE I G G LGE+
Sbjct: 7 PLNPKPFLNSLAGNRVIIKLKWGMEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIF 66
Query: 66 IRCNNILYIRGAEE 79
+RCNNILYIR +E
Sbjct: 67 LRCNNILYIREDKE 80
>gi|119191758|ref|XP_001246485.1| hypothetical protein CIMG_00256 [Coccidioides immitis RS]
gi|320036371|gb|EFW18310.1| sm snRNP core protein Smf1 [Coccidioides posadasii str. Silveira]
gi|392864283|gb|EAS34890.2| small nuclear ribonucleoprotein SmF [Coccidioides immitis RS]
Length = 89
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + VI +LKWG EYKG LVS D YMN QL++TEE IDG TG LG+
Sbjct: 4 VPLNPRPMLQSLVNEDVIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKNTGTLGQ 63
Query: 64 VLIRCNNILYIRGAE 78
VLIRCNN+L+I A+
Sbjct: 64 VLIRCNNVLWISAAK 78
>gi|330791644|ref|XP_003283902.1| hypothetical protein DICPUDRAFT_86021 [Dictyostelium purpureum]
gi|325086173|gb|EGC39567.1| hypothetical protein DICPUDRAFT_86021 [Dictyostelium purpureum]
Length = 85
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 57/79 (72%), Gaps = 3/79 (3%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+PKPFL L GK + +LKWG EY+GIL S D YMN Q+ +TEE IDG G+LGEV
Sbjct: 6 ALSPKPFLYGLKGKKIAVRLKWGGMEYRGILSSVDSYMNLQMLATEEWIDGAVMGQLGEV 65
Query: 65 LIRCNNILYIRGAEEGDEE 83
LIRCNN+LYIRG E DEE
Sbjct: 66 LIRCNNVLYIRGIE--DEE 82
>gi|322710221|gb|EFZ01796.1| small nuclear ribonucleoprotein SmF [Metarhizium anisopliae ARSEF
23]
Length = 87
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K V +LKWG EYKG LVS D YMN QLA TEE + TG LG+
Sbjct: 4 VPVNPRPMLQELVNKPVFVRLKWGQVEYKGTLVSVDSYMNLQLAGTEEYVSDKPTGLLGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEG 84
VLIRCNN+L++RGA++ +
Sbjct: 64 VLIRCNNVLWVRGADDSKDAA 84
>gi|239614009|gb|EEQ90996.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
ER-3]
Length = 90
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + +I LKWG EYKG LVS D YMN QL++TEE IDG TG LG+
Sbjct: 4 VPLNPRPMLQSLVNEDIIVHLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQ 63
Query: 64 VLIRCNNILYIRGAE 78
VLIRCNN+L+I A+
Sbjct: 64 VLIRCNNVLWISAAK 78
>gi|323454563|gb|EGB10433.1| hypothetical protein AURANDRAFT_22949 [Aureococcus
anophagefferens]
Length = 98
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 57/89 (64%), Gaps = 15/89 (16%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG---- 62
NPKPFLN LTGK+V+ KLKWG EY+G L+S D YMN QL T+E IDG G+LG
Sbjct: 4 VNPKPFLNDLTGKNVLVKLKWGMEYEGKLLSVDSYMNVQLGDTKEYIDGEMAGELGARPA 63
Query: 63 -----------EVLIRCNNILYIRGAEEG 80
EVLIRCNN++Y+R A E
Sbjct: 64 PAFSSPTDHKREVLIRCNNVMYLRKAPEA 92
>gi|66815943|ref|XP_641988.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74856500|sp|Q54XP2.1|RUXF_DICDI RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|60470031|gb|EAL68012.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 91
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS PKPFL L GK + +LKWG EY+GIL S D YMN QLA+TEE IDG G
Sbjct: 1 MSKIEALAPKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKG 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LGEVLIRCNN+L++RG ++
Sbjct: 61 PLGEVLIRCNNVLFVRGIDD 80
>gi|315045822|ref|XP_003172286.1| hypothetical protein MGYG_04873 [Arthroderma gypseum CBS 118893]
gi|311342672|gb|EFR01875.1| hypothetical protein MGYG_04873 [Arthroderma gypseum CBS 118893]
Length = 90
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + ++ +LKWG EYKG LVS D YMN QL+ TEE IDG TG LGE
Sbjct: 4 VPLNPRPMLQSLINEDIVVRLKWGQTEYKGRLVSVDSYMNIQLSQTEEFIDGKNTGTLGE 63
Query: 64 VLIRCNNILYI---RGAEEGD 81
VLIRCNN+L+I +G E+ D
Sbjct: 64 VLIRCNNVLWIGNAKGVEDKD 84
>gi|302419059|ref|XP_003007360.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261353011|gb|EEY15439.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 89
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K ++ +LKWG EYKG LVS D YMN QL+ EE ID TG LG+
Sbjct: 4 VPLNPRPMLQDLVNKDIVVRLKWGDTEYKGRLVSIDSYMNIQLSGAEEYIDQKMTGALGQ 63
Query: 64 VLIRCNNILYIRGAEEG 80
VLIRCNN+L+IR A+ G
Sbjct: 64 VLIRCNNVLWIRAADAG 80
>gi|164657710|ref|XP_001729981.1| hypothetical protein MGL_2967 [Malassezia globosa CBS 7966]
gi|159103875|gb|EDP42767.1| hypothetical protein MGL_2967 [Malassezia globosa CBS 7966]
Length = 94
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 54/89 (60%), Gaps = 14/89 (15%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMN--------------CQLASTE 50
P NPKPFL GK V+ +LKWG EYKG LVSTD YMN QLA+TE
Sbjct: 4 FPVNPKPFLQQQIGKKVLIRLKWGLEYKGFLVSTDNYMNFQVRWMGRRLSCSYTQLANTE 63
Query: 51 EIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
EI DG G LGEV IRCNN+LY+R E
Sbjct: 64 EIQDGKSNGTLGEVFIRCNNVLYLRELNE 92
>gi|50543240|ref|XP_499786.1| YALI0A05423p [Yarrowia lipolytica]
gi|49645651|emb|CAG83711.1| YALI0A05423p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 1 MSTPL-PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCT 58
MSTP P NPKPFL LTGKSVI LKWG EY+G LVS D YMN QL E +D
Sbjct: 1 MSTPFNPTNPKPFLQELTGKSVIVHLKWGKTEYQGTLVSVDSYMNLQLEDAVEYVDQENK 60
Query: 59 GKLGEVLIRCNNILYI 74
G+LG+V IRCNN+L+I
Sbjct: 61 GELGDVFIRCNNVLWI 76
>gi|341038876|gb|EGS23868.1| small nuclear ribonucleoprotein F-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 94
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFL L + VI +LKWG EYKG LVS D YMN QLA+TEE I+ TG LG+
Sbjct: 6 VPVNPRPFLQDLVNQDVIVRLKWGQTEYKGRLVSIDSYMNIQLANTEEFINYKSTGHLGQ 65
Query: 64 VLIRCNNILYIRGA 77
VLIRCNN+L++ A
Sbjct: 66 VLIRCNNVLWVTAA 79
>gi|85080344|ref|XP_956525.1| hypothetical protein NCU01614 [Neurospora crassa OR74A]
gi|30580500|sp|Q9P5Z8.1|RUXF_NEUCR RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|7800974|emb|CAB91372.1| related to snRNP protein SMX3 [Neurospora crassa]
gi|28917592|gb|EAA27289.1| predicted protein [Neurospora crassa OR74A]
gi|336468256|gb|EGO56419.1| hypothetical protein NEUTE1DRAFT_83630 [Neurospora tetrasperma
FGSC 2508]
gi|350289493|gb|EGZ70718.1| small nuclear ribonucleoprotein SmF [Neurospora tetrasperma FGSC
2509]
Length = 90
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFL L V +LKWG EY G LVS D YMN QL+ T+E I+ TG LG+
Sbjct: 4 VPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEMR 87
VLIRCNN+LYI+ A+E + G+++
Sbjct: 64 VLIRCNNVLYIKKADEAETSGDVK 87
>gi|407926562|gb|EKG19529.1| hypothetical protein MPH_03393 [Macrophomina phaseolina MS6]
Length = 93
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS +P NP+P L L GK + +LKWG+ EY G LVS D YMN QL +TEE I+G G
Sbjct: 1 MSAFMPVNPRPMLLALVGKEIRVRLKWGYTEYTGALVSADSYMNLQLTNTEEFINGESQG 60
Query: 60 KLGEVLIRCNNILYIRGAEEGD 81
LG+VLIRCNN+L+I + G+
Sbjct: 61 TLGQVLIRCNNVLWISAKDAGE 82
>gi|327304717|ref|XP_003237050.1| small nuclear ribonucleoprotein F [Trichophyton rubrum CBS
118892]
gi|326460048|gb|EGD85501.1| small nuclear ribonucleoprotein F [Trichophyton rubrum CBS
118892]
gi|326477298|gb|EGE01308.1| LSM domain-containing protein [Trichophyton equinum CBS 127.97]
Length = 90
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + ++ +LKWG EYKG L+S D YMN QL+ TEE IDG TG LGE
Sbjct: 4 VPLNPRPMLQSLINEDIVVRLKWGQTEYKGRLISVDSYMNIQLSQTEEFIDGKNTGTLGE 63
Query: 64 VLIRCNNILYI---RGAEEGD 81
VLIRCNN+L+I +G E+ D
Sbjct: 64 VLIRCNNVLWIGNAKGVEDKD 84
>gi|322699689|gb|EFY91449.1| small nuclear ribonucleoprotein SmF [Metarhizium acridum CQMa
102]
Length = 87
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K V +LKWG EYKG LVS D YMN QL+ TEE + TG LG+
Sbjct: 4 VPVNPRPMLQELVNKPVFVRLKWGQVEYKGTLVSVDSYMNLQLSGTEEYVSDKPTGLLGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEG 84
VLIRCNN+L++RGA++ +
Sbjct: 64 VLIRCNNVLWVRGADDSKDAA 84
>gi|430811435|emb|CCJ31076.1| unnamed protein product [Pneumocystis jirovecii]
Length = 67
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 51/67 (76%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ +P NPKPFL L G++VI KLKWG EY G L STD YMN QLA+TEE +DG TG+
Sbjct: 1 MTGFMPINPKPFLQGLAGQTVIVKLKWGQEYIGFLQSTDSYMNIQLANTEEFVDGKNTGQ 60
Query: 61 LGEVLIR 67
LGEVLIR
Sbjct: 61 LGEVLIR 67
>gi|154311929|ref|XP_001555293.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347839851|emb|CCD54423.1| similar to small nuclear ribonucleoprotein protein F [Botryotinia
fuckeliana]
Length = 91
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWG--HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
+P NP+PFL L + VI +LKWG EYKG LVS D YMN QL+ EE ID T LG
Sbjct: 4 VPINPRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTSTLG 63
Query: 63 EVLIRCNNILYIRGAEEGDEEGEMR 87
+VLIRCNN+LYI A+ EE + +
Sbjct: 64 QVLIRCNNVLYISAAQIKKEEDDTK 88
>gi|328772224|gb|EGF82263.1| hypothetical protein BATDEDRAFT_10083, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 65
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 49/63 (77%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK ++ KLKWG EYKG LVS D YMN QLA+TEE IDG G LGEV
Sbjct: 1 VPVNPKPFLNELTGKPIMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYIDGVSQGVLGEV 60
Query: 65 LIR 67
L+R
Sbjct: 61 LVR 63
>gi|396462236|ref|XP_003835729.1| similar to small nuclear ribonucleoprotein protein F
[Leptosphaeria maculans JN3]
gi|312212281|emb|CBX92364.1| similar to small nuclear ribonucleoprotein protein F
[Leptosphaeria maculans JN3]
Length = 93
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
M+ P NP+P L L K ++ +LKWG EYKG LVS D YMN QL++TEE ++G +G
Sbjct: 1 MAAVAPFNPRPLLQNLVDKDIVVRLKWGETEYKGRLVSVDLYMNIQLSNTEEFVNGVSSG 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LG+VLIRCNN+L+I AEE
Sbjct: 61 TLGQVLIRCNNVLWIGNAEE 80
>gi|444717889|gb|ELW58709.1| Small nuclear ribonucleoprotein F [Tupaia chinensis]
Length = 67
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 53/67 (79%)
Query: 22 ICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGD 81
+ KLK G EYKG LVS DGYMN QLA+TEE IDG +G LGEVLI CNNI YIRG EE +
Sbjct: 1 MVKLKRGMEYKGYLVSADGYMNMQLANTEENIDGALSGHLGEVLITCNNIFYIRGVEEEE 60
Query: 82 EEGEMRE 88
++GEMRE
Sbjct: 61 KDGEMRE 67
>gi|451845060|gb|EMD58374.1| hypothetical protein COCSADRAFT_165582 [Cochliobolus sativus
ND90Pr]
gi|451992499|gb|EMD84982.1| hypothetical protein COCHEDRAFT_1024734 [Cochliobolus
heterostrophus C5]
Length = 93
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
M+ P NP+P L L K ++ +LKWG EYKG LVS D YMN QL++TEE ++G +G
Sbjct: 1 MAAVAPFNPRPLLQSLVDKDIVVRLKWGETEYKGRLVSVDLYMNIQLSNTEEFVNGVSSG 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LG+VLIRCNN+L+I AEE
Sbjct: 61 TLGQVLIRCNNVLWIGKAEE 80
>gi|84999278|ref|XP_954360.1| small nuclear ribonucleoprotein f [Theileria annulata]
gi|65305358|emb|CAI73683.1| small nuclear ribonucleoprotein f, putative [Theileria annulata]
Length = 91
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 2 STP-LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
+TP P NPKPFL L GK+V+ KLKWG EYKG L S D YMN QL+ EE +G GK
Sbjct: 8 TTPGAPLNPKPFLTSLAGKTVVVKLKWGMEYKGTLKSFDSYMNLQLSDPEEWENGVLKGK 67
Query: 61 LG-EVLIRCNNILYIRGAEE 79
LG ++LIRCNN+LY+R + E
Sbjct: 68 LGNDILIRCNNMLYVRESSE 87
>gi|189188806|ref|XP_001930742.1| small nuclear ribonucleoprotein F [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972348|gb|EDU39847.1| small nuclear ribonucleoprotein F [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 93
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
M+ P NP+P L L K ++ +LKWG EYKG L+S D YMN QL++TEE ++G +G
Sbjct: 1 MAAVAPFNPRPLLQSLVDKDIVVRLKWGETEYKGRLISVDLYMNIQLSNTEEFVNGVSSG 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LG+VLIRCNN+L+I AEE
Sbjct: 61 TLGQVLIRCNNVLWIGKAEE 80
>gi|71032523|ref|XP_765903.1| small nuclear ribonucleoprotein F [Theileria parva strain Muguga]
gi|68352860|gb|EAN33620.1| small nuclear ribonucleoprotein F, putative [Theileria parva]
Length = 91
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG-EV 64
P NPKPFL L GK+V+ KLKWG EYKG L S D YMN QL+ EE +G GKLG ++
Sbjct: 13 PLNPKPFLTSLAGKTVVVKLKWGMEYKGTLKSFDSYMNLQLSDPEEWENGVLKGKLGNDI 72
Query: 65 LIRCNNILYIRGAEE 79
LIRCNN+LY+R + E
Sbjct: 73 LIRCNNMLYVRESSE 87
>gi|336271847|ref|XP_003350681.1| hypothetical protein SMAC_02352 [Sordaria macrospora k-hell]
gi|380094843|emb|CCC07345.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 90
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFL L V +LKWG EY G LVS D YMN QL+ T+E I+ TG LG+
Sbjct: 4 VPVNPRPFLQDLVNSLVTVRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEMR 87
VLIRCNN+LYI+ A+E + G+ +
Sbjct: 64 VLIRCNNVLYIKKADEAETGGDTK 87
>gi|344301854|gb|EGW32159.1| hypothetical protein SPAPADRAFT_61242 [Spathaspora passalidarum
NRRL Y-27907]
Length = 117
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII----DG 55
MST P NPKPFL L GK VI +LKW EY+G L+S D YMN QL T EII DG
Sbjct: 1 MSTFQPINPKPFLKSLIGKQVIVRLKWNKTEYRGTLISIDNYMNLQLDQTYEIIYEVEDG 60
Query: 56 HCTGK---LGEVLIRCNNILYIRGAEEGDEEGEM 86
+ T K +GE+ IRCNN+L++R A+ +E E+
Sbjct: 61 NETKKEESIGEIFIRCNNVLFVREAKSEPQETEI 94
>gi|403284568|ref|XP_003933637.1| PREDICTED: uncharacterized protein LOC101050458 [Saimiri
boliviensis boliviensis]
Length = 282
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+PKPFL+ LTGK V+ KL+WG E+KG LVS DGY N QLA+TEE I G +G L EVLIR
Sbjct: 202 DPKPFLSGLTGKPVVVKLRWGVEFKGCLVSVDGYKNVQLANTEEYIGGALSGHLWEVLIR 261
Query: 68 CNNILYIRGA 77
NNIL+IRG
Sbjct: 262 WNNILHIRGV 271
>gi|238231689|ref|NP_001154030.1| Small nuclear ribonucleoprotein F [Oncorhynchus mykiss]
gi|225703496|gb|ACO07594.1| Small nuclear ribonucleoprotein F [Oncorhynchus mykiss]
Length = 65
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 48/63 (76%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS D YMN QLA++EE +DG LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANSEEYVDGALADHLGEV 62
Query: 65 LIR 67
L+R
Sbjct: 63 LVR 65
>gi|389644698|ref|XP_003719981.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|351639750|gb|EHA47614.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|440470659|gb|ELQ39721.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae Y34]
gi|440487924|gb|ELQ67688.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae P131]
Length = 88
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K V +LKWG EYKG LVS D YMN QL++ +E ID G LG+
Sbjct: 4 MPVNPRPMLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSNAQEYIDQKLEGDLGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEMR 87
+LIRCNN+L++R A DE G+++
Sbjct: 64 ILIRCNNVLWVRSA-ATDENGDVK 86
>gi|378730981|gb|EHY57440.1| small nuclear ribonucleoprotein F [Exophiala dermatitidis
NIH/UT8656]
Length = 93
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+P L L VI +LKWG EYKG L+S D YMN QL++TEE ID TG LG+V
Sbjct: 5 PLNPRPLLQQLINDDVIIRLKWGQTEYKGRLISVDSYMNIQLSNTEEYIDRKHTGTLGQV 64
Query: 65 LIRCNNILYIRGAEEGDEEGE 85
LIRCNN+L+I A+ + GE
Sbjct: 65 LIRCNNVLWISAAKGVEMNGE 85
>gi|145517276|ref|XP_001444521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145518840|ref|XP_001445292.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411943|emb|CAK77124.1| unnamed protein product [Paramecium tetraurelia]
gi|124412736|emb|CAK77895.1| unnamed protein product [Paramecium tetraurelia]
Length = 81
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 53/75 (70%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M T NP+PFL +T K +I +LKWG E +G+L S+D YMN + +TEE +DG G
Sbjct: 1 MDTVSDINPRPFLEEITRKQIIVRLKWGWELRGVLKSSDQYMNLHMLNTEEYVDGKSRGI 60
Query: 61 LGEVLIRCNNILYIR 75
LGEVL+RCNN+LYIR
Sbjct: 61 LGEVLVRCNNVLYIR 75
>gi|358057300|dbj|GAA96649.1| hypothetical protein E5Q_03320 [Mixia osmundae IAM 14324]
Length = 114
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 48/71 (67%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P NPKPFL GK V +LKWG EY+G LVS D YMN QLA+TEE + G LGE
Sbjct: 3 PQITNPKPFLQDRVGKPVQVRLKWGMEYRGYLVSIDNYMNLQLANTEEYQNDQPAGSLGE 62
Query: 64 VLIRCNNILYI 74
V IRCNN+LY+
Sbjct: 63 VFIRCNNVLYM 73
>gi|399216718|emb|CCF73405.1| unnamed protein product [Babesia microti strain RI]
Length = 92
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 49/69 (71%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL L GK+V KLKWG EY+G L S D YMN QL S EE IDG G LG +L
Sbjct: 20 PVNPKPFLTSLLGKNVNVKLKWGMEYRGQLKSFDTYMNIQLDSAEEWIDGDFKGVLGLIL 79
Query: 66 IRCNNILYI 74
IRCNN+LYI
Sbjct: 80 IRCNNVLYI 88
>gi|330931612|ref|XP_003303470.1| hypothetical protein PTT_15691 [Pyrenophora teres f. teres 0-1]
gi|311320515|gb|EFQ88431.1| hypothetical protein PTT_15691 [Pyrenophora teres f. teres 0-1]
Length = 149
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
M+ P NP+P L L K ++ +LKWG EYKG L+S D YMN QL++TEE ++G +G
Sbjct: 57 MAAVAPFNPRPLLQSLVDKDIVVRLKWGETEYKGRLISVDLYMNIQLSNTEEFVNGVSSG 116
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LG+VLIRCNN+L+I AEE
Sbjct: 117 TLGQVLIRCNNVLWIGKAEE 136
>gi|402084326|gb|EJT79344.1| small nuclear ribonucleoprotein F [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 85
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K V +LKWG EYKG LVS D YMN QL+ +E ID G LG+
Sbjct: 4 VPINPRPMLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSGAQEYIDQKLAGDLGQ 63
Query: 64 VLIRCNNILYIRGAE 78
+LIRCNN+L++RGA+
Sbjct: 64 ILIRCNNVLWVRGAD 78
>gi|452838673|gb|EME40613.1| hypothetical protein DOTSEDRAFT_27245 [Dothistroma septosporum
NZE10]
Length = 89
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NP+P L L K VI K+KWG EY G LVS D YMN QL+ E DG G LG+V
Sbjct: 4 IPLNPRPMLQSLVDKEVIIKIKWGQEYTGKLVSVDSYMNIQLSGCSEWKDGQDMGVLGQV 63
Query: 65 LIRCNNILYIRGAEEGDEEGEMR 87
LIRCNN+L+I + E G+ +
Sbjct: 64 LIRCNNVLWISARNQKQENGDAK 86
>gi|403220738|dbj|BAM38871.1| small nuclear ribonucleoprotein f [Theileria orientalis strain
Shintoku]
Length = 84
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG-EV 64
P NPKPFL L GK+V+ KLKWG EYKG L S D YMN QL EE +G GKLG ++
Sbjct: 10 PLNPKPFLTSLAGKAVVVKLKWGMEYKGTLKSFDSYMNLQLQDPEEWENGVLKGKLGNDI 69
Query: 65 LIRCNNILYIR 75
LIRCNN+LY+R
Sbjct: 70 LIRCNNMLYVR 80
>gi|452978679|gb|EME78442.1| hypothetical protein MYCFIDRAFT_36806, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 87
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NP+P L L K V+ K+KWG EY G LVS D YMN QL+ +E DG G LG+V
Sbjct: 2 VPLNPRPMLQGLVNKEVVVKIKWGQEYTGRLVSVDSYMNIQLSGAQEWKDGVDNGVLGQV 61
Query: 65 LIRCNNILYIRGAEEGDEEGE 85
LIRCNN+L+I + E G+
Sbjct: 62 LIRCNNVLWISARKSKQENGD 82
>gi|119617955|gb|EAW97549.1| small nuclear ribonucleoprotein polypeptide F, isoform CRA_b
[Homo sapiens]
gi|344252281|gb|EGW08385.1| Small nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 67
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 46/56 (82%)
Query: 22 ICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEVLIRCNN+LYIRG
Sbjct: 1 MVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 56
>gi|148688807|gb|EDL20754.1| mCG1048415 [Mus musculus]
Length = 83
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPK LN LTGK V+ KLKWG EY LVS DGYMN QLA+TEE IDG + LGEV
Sbjct: 3 LPLNPKTSLNGLTGKPVMVKLKWGMEY---LVSMDGYMNMQLANTEEYIDGELSEHLGEV 59
Query: 65 LIRCNNILY 73
L RCNN+LY
Sbjct: 60 LKRCNNVLY 68
>gi|241955739|ref|XP_002420590.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223643932|emb|CAX41669.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 131
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII-DGHCT 58
MS P NP PFL L GKS+I +LKW +YKGIL+S D YMN QL T EII D T
Sbjct: 1 MSNFQPINPTPFLKSLIGKSIIVRLKWNKTQYKGILISIDNYMNLQLDQTYEIISDDINT 60
Query: 59 GK---LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
K +GE+ IRCNN+L+IR +E +++ + +
Sbjct: 61 TKEELIGEIFIRCNNVLFIREYKEIEQQNQQTD 93
>gi|259483935|tpe|CBF79732.1| TPA: small nuclear ribonucleoprotein SmF, putative
(AFU_orthologue; AFUA_2G15500) [Aspergillus nidulans
FGSC A4]
Length = 88
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G VI +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 5 PVNPRPFLQARVGTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ AE
Sbjct: 65 LIRCNNILWMGSAE 78
>gi|46108998|ref|XP_381557.1| hypothetical protein FG01381.1 [Gibberella zeae PH-1]
gi|408391969|gb|EKJ71335.1| hypothetical protein FPSE_08574 [Fusarium pseudograminearum
CS3096]
Length = 89
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+P L L K V+ +LKWG EYKG LVS D YMN QL+ TEE I TG LG+V
Sbjct: 5 PINPRPMLEELVSKQVLVRLKWGETEYKGTLVSIDSYMNIQLSGTEEYIADKPTGSLGQV 64
Query: 65 LIRCNNILYIR 75
LIRCNN+L++R
Sbjct: 65 LIRCNNVLWVR 75
>gi|255953221|ref|XP_002567363.1| Pc21g02990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589074|emb|CAP95196.1| Pc21g02990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 88
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G V+ +LKWG EYKG L S D YMN L T+E IDG TG LG V
Sbjct: 5 PLNPRPFLQARVGTEVLIRLKWGQTEYKGTLESIDSYMNVLLRDTQEFIDGKPTGALGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNILY+ A+
Sbjct: 65 LIRCNNILYLGSAD 78
>gi|118345766|ref|XP_976713.1| Sm protein [Tetrahymena thermophila]
gi|89288130|gb|EAR86118.1| Sm protein [Tetrahymena thermophila SB210]
Length = 845
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 52/83 (62%), Gaps = 12/83 (14%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMN------------CQLASTEEIIDG 55
NPKPFL L GK ++ KLKWG E KG L+STD YMN +L + EE + G
Sbjct: 761 NPKPFLEDLLGKQIVVKLKWGWELKGTLLSTDLYMNLHQSHQFNFQNSTKLLNAEEWVKG 820
Query: 56 HCTGKLGEVLIRCNNILYIRGAE 78
G LGE+LIRCNN+LYIRG E
Sbjct: 821 ENKGTLGEILIRCNNVLYIRGVE 843
>gi|213406521|ref|XP_002174032.1| small nuclear ribonucleoprotein F [Schizosaccharomyces japonicus
yFS275]
gi|212002079|gb|EEB07739.1| small nuclear ribonucleoprotein F [Schizosaccharomyces japonicus
yFS275]
Length = 66
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 44/62 (70%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFL LTGK V+ +LKWG EYKG L S D YMN QL EE IDG TG+LGE+
Sbjct: 5 PVNPKPFLQGLTGKPVLIRLKWGQEYKGTLQSIDSYMNLQLMDAEEWIDGESTGQLGEIF 64
Query: 66 IR 67
IR
Sbjct: 65 IR 66
>gi|444316380|ref|XP_004178847.1| hypothetical protein TBLA_0B04935 [Tetrapisispora blattae CBS
6284]
gi|387511887|emb|CCH59328.1| hypothetical protein TBLA_0B04935 [Tetrapisispora blattae CBS
6284]
Length = 104
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKP+L L +I LK+ +YKGILVSTD Y N QL +TEEI+DG TG+LG++
Sbjct: 16 PVNPKPYLRSLIDTPIIVTLKFNKTQYKGILVSTDNYFNIQLRNTEEIVDGKTTGQLGDI 75
Query: 65 LIRCNNILYI 74
IRCNN+L+I
Sbjct: 76 FIRCNNVLWI 85
>gi|50422347|ref|XP_459736.1| DEHA2E09878p [Debaryomyces hansenii CBS767]
gi|49655404|emb|CAG87972.1| DEHA2E09878p [Debaryomyces hansenii CBS767]
Length = 101
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII--DGHC 57
MS+ P NPKPFL L GK VI +LKW EYKG L+S D YMN QL T E+I DG
Sbjct: 1 MSSFQPINPKPFLKTLIGKQVIVRLKWNKTEYKGTLISIDNYMNLQLDKTSEVIYEDGEK 60
Query: 58 TGK-LGEVLIRCNNILYIRGAEE---GDEEGE 85
+ +GE+ IRCNN+L+IR +E G + GE
Sbjct: 61 KEEVIGEIFIRCNNVLFIREDKEVQNGSDSGE 92
>gi|453081451|gb|EMF09500.1| small nuclear ribonucleo protein SmF [Mycosphaerella populorum
SO2202]
Length = 89
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGE 63
+P NP+P L L K VI ++KWG EY G LVS D YMN QL+ EE DGH G LG+
Sbjct: 4 IPLNPRPMLQGLVNKDVIVRIKWGQEYSGRLVSVDSYMNIQLSGAEEKSPDGHDGGVLGQ 63
Query: 64 VLIRCNNILYIRGAEE---GDEE 83
VLIRCNN+L+I ++ GD E
Sbjct: 64 VLIRCNNVLWISAKDKQANGDSE 86
>gi|425767171|gb|EKV05747.1| Small nuclear ribonucleoprotein SmF, putative [Penicillium
digitatum Pd1]
gi|425769096|gb|EKV07603.1| Small nuclear ribonucleoprotein SmF, putative [Penicillium
digitatum PHI26]
Length = 88
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G V+ +LKWG EYKGIL S D Y+N L T+E IDG TG LG V
Sbjct: 5 PVNPRPFLQARVGTEVLIRLKWGQTEYKGILESVDSYINVLLRDTQEFIDGKPTGALGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ A+
Sbjct: 65 LIRCNNILWMGSAD 78
>gi|410955248|ref|XP_003984268.1| PREDICTED: uncharacterized protein LOC101089093 [Felis catus]
Length = 285
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 59/86 (68%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
++ LP NPK FL LTGK V+ KLK EYK LVS DGYMN QLA+ E+ IDG +G
Sbjct: 200 VTMSLPLNPKTFLKGLTGKPVMTKLKSRMEYKDHLVSADGYMNMQLANAEKYIDGASSGH 259
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEM 86
+V+ CNN+LY RG EE +E+GEM
Sbjct: 260 FSQVITGCNNVLYNRGVEEEEEDGEM 285
>gi|365990688|ref|XP_003672173.1| hypothetical protein NDAI_0J00380 [Naumovozyma dairenensis CBS
421]
gi|343770948|emb|CCD26930.1| hypothetical protein NDAI_0J00380 [Naumovozyma dairenensis CBS
421]
Length = 102
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P NPKP+L L K ++ LK+ +YKG LVSTD Y N QL+ EE+++G G
Sbjct: 1 MSEFTPINPKPYLRELAQKPIVVTLKFNKTQYKGTLVSTDNYFNIQLSDAEEVVNGESKG 60
Query: 60 KLGEVLIRCNNILYI 74
K+G++ IRCNN+LYI
Sbjct: 61 KIGDIFIRCNNVLYI 75
>gi|358373866|dbj|GAA90462.1| DUF866 domain protein [Aspergillus kawachii IFO 4308]
Length = 242
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G VI +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 159 PVNPRPFLQARVGTEVIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLV 218
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ A+
Sbjct: 219 LIRCNNILWMGSAD 232
>gi|326473004|gb|EGD97013.1| LSM domain-containing protein [Trichophyton tonsurans CBS 112818]
Length = 107
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 12/89 (13%)
Query: 5 LPCNPKPFLN--------LLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDG 55
+P NP+P L L + ++ +LKWG EYKG L+S D YMN QL+ TEE IDG
Sbjct: 13 VPLNPRPMLQSFDISTRMLGINEDIVVRLKWGQTEYKGRLISVDSYMNIQLSQTEEFIDG 72
Query: 56 HCTGKLGEVLIRCNNILYI---RGAEEGD 81
TG LGEVLIRCNN+L+I +G E+ D
Sbjct: 73 KNTGTLGEVLIRCNNVLWIGNAKGVEDKD 101
>gi|281344696|gb|EFB20280.1| hypothetical protein PANDA_013190 [Ailuropoda melanoleuca]
Length = 75
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 53/74 (71%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NP+PFLN L G+ V+ +L+WG E KG LV GYMN QLA+ +E IDG +G+L EVL
Sbjct: 1 PLNPEPFLNGLPGRPVMGELQWGMECKGSLVLVGGYMNMQLANVKERIDGILSGRLSEVL 60
Query: 66 IRCNNILYIRGAEE 79
I+ NN+ YIR EE
Sbjct: 61 IKRNNVFYIRSTEE 74
>gi|146323040|ref|XP_755885.2| small nuclear ribonucleoprotein SmF [Aspergillus fumigatus Af293]
gi|129558586|gb|EAL93847.2| small nuclear ribonucleoprotein SmF, putative [Aspergillus
fumigatus Af293]
Length = 88
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G +I +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 5 PVNPRPFLQARVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ A+
Sbjct: 65 LIRCNNILWMGSAD 78
>gi|212530490|ref|XP_002145402.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
marneffei ATCC 18224]
gi|210074800|gb|EEA28887.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
marneffei ATCC 18224]
Length = 88
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G +I +LKWG EY+G L S D YMN L TEE IDG TG LG V
Sbjct: 5 PLNPRPFLQARVGTELIIRLKWGQTEYRGTLESIDSYMNVLLRDTEEYIDGKNTGSLGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ A+
Sbjct: 65 LIRCNNILWMASAD 78
>gi|145251167|ref|XP_001397097.1| small nuclear ribonucleoprotein F [Aspergillus niger CBS 513.88]
gi|134082627|emb|CAK42521.1| unnamed protein product [Aspergillus niger]
Length = 88
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G +I +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 5 PVNPRPFLQARVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ A+
Sbjct: 65 LIRCNNILWMGSAD 78
>gi|226291857|gb|EEH47285.1| LSM domain-containing protein [Paracoccidioides brasiliensis
Pb18]
Length = 93
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 21 VICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
+I +LKWGH EYKG LVS D YMN QL++TEE IDG TG LG+VLIRCNN+L+I A++
Sbjct: 24 IIVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIRCNNVLWISAAKD 83
>gi|255710425|ref|XP_002551496.1| KLTH0A00770p [Lachancea thermotolerans]
gi|238932873|emb|CAR21054.1| KLTH0A00770p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P NPKPFL L K ++ LK+ +YKG+LVSTD Y N QL EE I+G G
Sbjct: 1 MSELAPTNPKPFLRELINKPIVVTLKFNKTQYKGLLVSTDNYFNLQLTEAEEFIEGQSKG 60
Query: 60 KLGEVLIRCNNILYI 74
K+G++ IRCNN+L+I
Sbjct: 61 KIGDIFIRCNNVLWI 75
>gi|121716524|ref|XP_001275833.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119403990|gb|EAW14407.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 88
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G ++ +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 5 PVNPRPFLQARVGTELVIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ A+
Sbjct: 65 LIRCNNILWMGSAD 78
>gi|342878436|gb|EGU79779.1| hypothetical protein FOXB_09741 [Fusarium oxysporum Fo5176]
Length = 89
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
NP+P L L G V+ +LKWG EYKG LVS D YMN QL+ TEE I+ TG LG+VLI
Sbjct: 7 NPRPMLEKLVGNPVLVRLKWGEVEYKGTLVSIDSYMNIQLSGTEEYIEDKPTGSLGQVLI 66
Query: 67 RCNNILYIR 75
RCNN+L++R
Sbjct: 67 RCNNVLWVR 75
>gi|448515600|ref|XP_003867370.1| Smx3 protein [Candida orthopsilosis Co 90-125]
gi|380351709|emb|CCG21932.1| Smx3 protein [Candida orthopsilosis]
Length = 130
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII----DG 55
MS+ P NPKPF+ L GK V+ +LKW EY+G L+STD Y+N QL +T EII D
Sbjct: 1 MSSFQPINPKPFMKSLIGKQVVVRLKWNKTEYRGQLISTDNYLNLQLDNTFEIIYDNEDK 60
Query: 56 HCTGKLGEVLIRCNNILYIRGAEEGDEEGEMR 87
+G + IRCNN+L+IR E D+E E +
Sbjct: 61 PREEAIGSIFIRCNNVLFIR--EHKDQEAESK 90
>gi|238488667|ref|XP_002375571.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus flavus
NRRL3357]
gi|317137842|ref|XP_003190097.1| small nuclear ribonucleoprotein F [Aspergillus oryzae RIB40]
gi|220697959|gb|EED54299.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus flavus
NRRL3357]
Length = 88
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G ++ +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 5 PVNPRPFLQTRVGTEMVIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLV 64
Query: 65 LIRCNNILYIRGAE 78
LIRCNNIL++ A+
Sbjct: 65 LIRCNNILWMGSAD 78
>gi|398392379|ref|XP_003849649.1| hypothetical protein MYCGRDRAFT_75738 [Zymoseptoria tritici
IPO323]
gi|339469526|gb|EGP84625.1| hypothetical protein MYCGRDRAFT_75738 [Zymoseptoria tritici
IPO323]
Length = 89
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NP+P L L + V+ ++KWG EY G LVS D YMN QL + +E DG G LG+V
Sbjct: 4 IPLNPRPMLQALVNQDVLIRIKWGQEYTGRLVSVDSYMNVQLGNAKEWKDGDEQGDLGQV 63
Query: 65 LIRCNNILYI 74
LIRCNN+L+I
Sbjct: 64 LIRCNNVLWI 73
>gi|209881570|ref|XP_002142223.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557829|gb|EEA07874.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 92
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS + NPKPFL L K+VI +LKWG+ EYKG L S D YMN L EE IDG G
Sbjct: 1 MSGLVAVNPKPFLTGLIEKTVIVRLKWGNIEYKGTLESYDDYMNFLLRDCEEWIDGTVKG 60
Query: 60 KLGEVLIRCNNILYIR 75
LG V IRCNNILYIR
Sbjct: 61 ALGTVFIRCNNILYIR 76
>gi|156086192|ref|XP_001610505.1| small nuclear ribonucleoprotein F [Babesia bovis T2Bo]
gi|154797758|gb|EDO06937.1| small nuclear ribonucleoprotein F, putative [Babesia bovis]
Length = 94
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL-GEV 64
P NPKPFL L G++V LKWG EYKG L S D YMN +L + EE +G G L G +
Sbjct: 21 PLNPKPFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIELENAEEWENGVMKGTLGGTI 80
Query: 65 LIRCNNILYIRGAE 78
LIRCNN+L+IR AE
Sbjct: 81 LIRCNNVLHIRAAE 94
>gi|167377724|ref|XP_001734515.1| small nuclear ribonucleoprotein F [Entamoeba dispar SAW760]
gi|165903946|gb|EDR29326.1| small nuclear ribonucleoprotein F, putative [Entamoeba dispar
SAW760]
Length = 83
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 49/70 (70%)
Query: 10 KPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCN 69
+ FLN L GK V KLKWG EYKG+LVS D YMN L + EE +G GK+G+VLIRCN
Sbjct: 11 EKFLNDLIGKLVSIKLKWGMEYKGVLVSRDAYMNFLLTNAEEWTNGVIAGKVGDVLIRCN 70
Query: 70 NILYIRGAEE 79
N+LY+R E
Sbjct: 71 NVLYVRDLSE 80
>gi|154286416|ref|XP_001544003.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407644|gb|EDN03185.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 80
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 12 FLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
L L + V+ +LKWGH EYKG LVS D YMN QL++TEE I+G TG LG+VLIRCNN
Sbjct: 1 MLQSLVNEDVLVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIEGKSTGSLGQVLIRCNN 60
Query: 71 ILYIRGAE 78
+L+I A+
Sbjct: 61 VLWISAAK 68
>gi|254580984|ref|XP_002496477.1| ZYRO0D00990p [Zygosaccharomyces rouxii]
gi|238939369|emb|CAR27544.1| ZYRO0D00990p [Zygosaccharomyces rouxii]
Length = 99
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P NPKPFL L K ++ LK+ +YKG L+STD Y N QL+ EE++DG G
Sbjct: 1 MSDFTPTNPKPFLGELVNKPIVVTLKFNKTQYKGTLISTDNYFNLQLSEAEEVVDGKNKG 60
Query: 60 KLGEVLIRCNNILYI 74
K+G + IRCNN+L+I
Sbjct: 61 KVGNIFIRCNNVLWI 75
>gi|296414624|ref|XP_002836998.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632846|emb|CAZ81189.1| unnamed protein product [Tuber melanosporum]
Length = 79
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 12 FLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
L L +SV +LKWG EYKG LVS D YMN QL+ TEE +DG TG LG+VLIRCNN
Sbjct: 1 MLQSLVNQSVTVRLKWGQTEYKGTLVSADSYMNIQLSGTEEFVDGKSTGSLGQVLIRCNN 60
Query: 71 ILYIRG 76
+L+I G
Sbjct: 61 VLWISG 66
>gi|303313371|ref|XP_003066697.1| membrane-associated protein, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106359|gb|EER24552.1| membrane-associated protein, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 91
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 16 LTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
L + VI +LKWG EYKG LVS D YMN QL++TEE IDG TG LG+VLIRCNN+L+I
Sbjct: 17 LESQDVIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKNTGTLGQVLIRCNNVLWI 76
Query: 75 RGAE 78
A+
Sbjct: 77 SAAK 80
>gi|294936349|ref|XP_002781728.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239892650|gb|EER13523.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 88
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFLN LTG+ V+ +LKWG E KG L S D +MN +L EE G+ G LG+
Sbjct: 4 VPVNPQPFLNDLTGQEVLVRLKWGTLELKGRLQSVDTFMNLRLDHCEEWQAGNFKGALGD 63
Query: 64 VLIRCNNILYIRGA 77
VLIRCNN+LY+R A
Sbjct: 64 VLIRCNNVLYVRAA 77
>gi|449710107|gb|EMD49242.1| small nuclear ribonucleoprotein F, putative [Entamoeba
histolytica KU27]
Length = 83
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%)
Query: 10 KPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCN 69
+ FLN L GK V KLKWG EYKG+LVS D YMN L + EE +G GK+G+VLIRCN
Sbjct: 11 EKFLNDLIGKFVSIKLKWGMEYKGMLVSRDAYMNFLLTNAEEWTNGVMAGKVGDVLIRCN 70
Query: 70 NILYIR 75
N+LY+R
Sbjct: 71 NVLYVR 76
>gi|260941980|ref|XP_002615156.1| hypothetical protein CLUG_05171 [Clavispora lusitaniae ATCC
42720]
gi|238851579|gb|EEQ41043.1| hypothetical protein CLUG_05171 [Clavispora lusitaniae ATCC
42720]
Length = 105
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII---DGHCTGKL 61
P NPKPFL L K VI +LKW EYKG L+S D YMN QL T E+I +G K+
Sbjct: 22 PINPKPFLKTLLNKQVIVRLKWNKTEYKGTLLSIDNYMNLQLDETYEVIRDENGKREEKI 81
Query: 62 GEVLIRCNNILYIR 75
GE+ IRCNN+L++R
Sbjct: 82 GEIFIRCNNVLFVR 95
>gi|156846667|ref|XP_001646220.1| hypothetical protein Kpol_1013p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156116894|gb|EDO18362.1| hypothetical protein Kpol_1013p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 84
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P NPKPFL L K V+ LK+ +YKG LVSTD Y N QL EE+ID G
Sbjct: 1 MSEFQPTNPKPFLKELVNKPVVVTLKFNKTQYKGQLVSTDNYFNLQLTDAEEVIDNVSKG 60
Query: 60 KLGEVLIRCNNILYI 74
K+G++ IRCNN+L++
Sbjct: 61 KVGDIFIRCNNVLWV 75
>gi|67476154|ref|XP_653680.1| small nuclear ribonucleoprotein F [Entamoeba histolytica
HM-1:IMSS]
gi|56470655|gb|EAL48292.1| small nuclear ribonucleoprotein F, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407038538|gb|EKE39178.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 83
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%)
Query: 10 KPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCN 69
+ FLN L GK V KLKWG EYKG+LVS D YMN L + EE +G GK+G+VLIRCN
Sbjct: 11 EKFLNDLIGKLVSIKLKWGMEYKGMLVSRDAYMNFLLTNAEEWTNGVMAGKVGDVLIRCN 70
Query: 70 NILYIR 75
N+LY+R
Sbjct: 71 NVLYVR 76
>gi|294874707|ref|XP_002767059.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239868487|gb|EEQ99776.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 88
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFLN LTG+ V+ +LKW E KG L S D +MN +L EE G+ G LG+
Sbjct: 4 VPVNPQPFLNDLTGQEVLVRLKWATLELKGRLQSVDTFMNLRLDHCEEWQSGNFKGALGD 63
Query: 64 VLIRCNNILYIRGA 77
VLIRCNN+LY+R A
Sbjct: 64 VLIRCNNVLYVRAA 77
>gi|395746943|ref|XP_003778537.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
F-like [Pongo abelii]
Length = 122
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 48/71 (67%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
L N KPFL LT K V+ KLKWG +YKG LVS DGYMN LA+TEE I + +V
Sbjct: 24 LHLNSKPFLKGLTEKPVMVKLKWGMDYKGXLVSVDGYMNMXLANTEEYIAXATMPSVDKV 83
Query: 65 LIRCNNILYIR 75
LIR NN+LYIR
Sbjct: 84 LIRYNNVLYIR 94
>gi|50288725|ref|XP_446792.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526100|emb|CAG59719.1| unnamed protein product [Candida glabrata]
Length = 86
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P NPKPFL L K ++ LK+ +Y+G+LVSTD Y N QL +E + G G
Sbjct: 1 MSDFTPINPKPFLKDLVDKPIVVTLKFNKTQYRGVLVSTDNYFNLQLRDAQEYVAGELKG 60
Query: 60 KLGEVLIRCNNILYI 74
LGE+ IRCNN+LYI
Sbjct: 61 TLGELFIRCNNVLYI 75
>gi|126137233|ref|XP_001385140.1| hypothetical protein PICST_46368 [Scheffersomyces stipitis CBS
6054]
gi|126092362|gb|ABN67111.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 78
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII-DGHCTGK--L 61
P NPKPFL L K VI +LKW EYKG L+S D YMN QL +T E+I DG + +
Sbjct: 3 PINPKPFLKTLINKQVIVRLKWNKTEYKGTLISIDNYMNFQLDNTYEVIYDGESKKQELI 62
Query: 62 GEVLIRCNNILYIR 75
GE+ IRCNN+L+IR
Sbjct: 63 GEIFIRCNNVLFIR 76
>gi|429328455|gb|AFZ80215.1| small nuclear ribonucleoprotein f, putative [Babesia equi]
Length = 80
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL-GEV 64
P NPKPFL L GK+VI KLKWG EY+GIL S D YMN QL S EE +G GKL GEV
Sbjct: 13 PLNPKPFLTNLAGKTVIVKLKWGMEYRGILKSFDSYMNLQLDSAEEWQNGTLKGKLGGEV 72
Query: 65 LIRCNN 70
LIR N
Sbjct: 73 LIRFVN 78
>gi|344233338|gb|EGV65211.1| small nuclear ribonucleo protein SmF [Candida tenuis ATCC 10573]
gi|344233339|gb|EGV65212.1| hypothetical protein CANTEDRAFT_134081 [Candida tenuis ATCC
10573]
Length = 104
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQL--ASTEEIIDGHCTGK-L 61
P NPKPFL L K VI +LKW EY G LVS D YMN QL AS +DG T + +
Sbjct: 8 PINPKPFLKTLLNKRVIVRLKWNKTEYTGNLVSVDNYMNFQLDDASETAYVDGKKTAETV 67
Query: 62 GEVLIRCNNILYIRGAEE 79
GEV IRCNN+L++R A +
Sbjct: 68 GEVFIRCNNVLFVREATD 85
>gi|354547239|emb|CCE43973.1| hypothetical protein CPAR2_501980 [Candida parapsilosis]
Length = 132
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII----DG 55
MS+ P NPKPF+ L G+ V+ +LKW EY+G L+STD Y+N QL +T EII D
Sbjct: 1 MSSFQPINPKPFIKSLIGQEVVVRLKWNKTEYRGQLMSTDNYLNLQLDNTFEIIYDSEDK 60
Query: 56 HCTGKLGEVLIRCNNILYIR 75
++G + IRCNN+L+IR
Sbjct: 61 FREEEIGSIFIRCNNVLFIR 80
>gi|238882707|gb|EEQ46345.1| small nuclear ribonucleoprotein F [Candida albicans WO-1]
Length = 126
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 7/84 (8%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEII----DGHCTGK 60
P NP PFL L GK++I +LKW +YKG LVS D YMN QL T EII D T +
Sbjct: 5 PINPTPFLKSLIGKTIIVRLKWNKTQYKGTLVSIDNYMNLQLDQTYEIISESTDTDATKE 64
Query: 61 --LGEVLIRCNNILYIRGAEEGDE 82
+GE+ IRCNN+L+IR +E +
Sbjct: 65 ELIGEIFIRCNNVLFIREYKEQQQ 88
>gi|50308333|ref|XP_454168.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643303|emb|CAG99255.1| KLLA0E04929p [Kluyveromyces lactis]
Length = 112
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFL+ L K V+ LK+ +YKG LVS D Y N QL EEII+ +GK+G++
Sbjct: 8 PINPKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDI 67
Query: 65 LIRCNNILYI 74
IRCNN+LY+
Sbjct: 68 FIRCNNVLYV 77
>gi|410075770|ref|XP_003955467.1| hypothetical protein KAFR_0B00320 [Kazachstania africana CBS
2517]
gi|372462050|emb|CCF56332.1| hypothetical protein KAFR_0B00320 [Kazachstania africana CBS
2517]
Length = 81
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P NPKPFL L K ++ LK+ + +Y+G LVSTD Y N QL+ EE + G
Sbjct: 1 MSEFAPINPKPFLRDLVNKKIVVTLKFNNTKYRGTLVSTDNYFNIQLSEAEEFVSNKSKG 60
Query: 60 KLGEVLIRCNNILYI 74
+G++ IRCNN+LYI
Sbjct: 61 TIGDIFIRCNNVLYI 75
>gi|367005059|ref|XP_003687262.1| hypothetical protein TPHA_0I03270 [Tetrapisispora phaffii CBS
4417]
gi|357525565|emb|CCE64828.1| hypothetical protein TPHA_0I03270 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFL L GK ++ KLK+ EY G L S D Y N QL + EE+IDG G +G++
Sbjct: 11 PVNPKPFLRDLIGKKIVVKLKFNKTEYIGTLKSLDNYFNLQLDAAEEVIDGVSKGTIGDI 70
Query: 65 LIRCNNILYI 74
IRCNN+LY+
Sbjct: 71 FIRCNNVLYV 80
>gi|6325440|ref|NP_015508.1| Smx3p [Saccharomyces cerevisiae S288c]
gi|1711405|sp|P54999.1|RUXF_YEAST RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|786316|gb|AAB68115.1| Smx3p: Sm or Sm-like snRNP protein [Saccharomyces cerevisiae]
gi|809101|emb|CAA58022.1| snRNP protein SmX3 [Saccharomyces cerevisiae]
gi|45269988|gb|AAS56375.1| YPR182W [Saccharomyces cerevisiae]
gi|151942952|gb|EDN61298.1| Sm F [Saccharomyces cerevisiae YJM789]
gi|190408104|gb|EDV11369.1| small nuclear ribonucleoprotein F [Saccharomyces cerevisiae
RM11-1a]
gi|256272443|gb|EEU07425.1| Smx3p [Saccharomyces cerevisiae JAY291]
gi|259150339|emb|CAY87142.1| Smx3p [Saccharomyces cerevisiae EC1118]
gi|285815706|tpg|DAA11598.1| TPA: Smx3p [Saccharomyces cerevisiae S288c]
gi|349581979|dbj|GAA27136.1| K7_Smx3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296184|gb|EIW07287.1| Smx3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 86
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
+S P NPKPFL L V KLK+ EY+G LVSTD Y N QL EE + G G
Sbjct: 7 ISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHG 66
Query: 60 KLGEVLIRCNNILYIR 75
LGE+ IRCNN+LYIR
Sbjct: 67 TLGEIFIRCNNVLYIR 82
>gi|27574143|pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574144|pdb|1N9R|B Chain B, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574145|pdb|1N9R|C Chain C, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574146|pdb|1N9R|D Chain D, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574147|pdb|1N9R|E Chain E, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574148|pdb|1N9R|F Chain F, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574149|pdb|1N9R|G Chain G, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
Length = 93
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
+S P NPKPFL L V KLK+ EY+G LVSTD Y N QL EE + G G
Sbjct: 14 ISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHG 73
Query: 60 KLGEVLIRCNNILYIR 75
LGE+ IRCNN+LYIR
Sbjct: 74 TLGEIFIRCNNVLYIR 89
>gi|300122521|emb|CBK23091.2| unnamed protein product [Blastocystis hominis]
Length = 74
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIR 75
+TGK + KLKWG EY+G LVS D YMN QL++ EE +DG T LG+VLIRCNN+LYIR
Sbjct: 1 MTGKLICVKLKWGLEYQGRLVSFDSYMNLQLSNCEEYVDGKSTALLGDVLIRCNNVLYIR 60
Query: 76 GAEEGDEEG 84
E D EG
Sbjct: 61 --EVPDNEG 67
>gi|346976539|gb|EGY19991.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 79
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 12 FLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
L L K ++ +LKWG EYKG LVS D YMN QL+ EE ID TG LG+VLIRCNN
Sbjct: 1 MLQDLVNKDIVVRLKWGDTEYKGRLVSIDSYMNIQLSGAEEYIDQKMTGALGQVLIRCNN 60
Query: 71 ILYIRGAEEG 80
+L+IR A G
Sbjct: 61 VLWIRAAGAG 70
>gi|328850359|gb|EGF99525.1| hypothetical protein MELLADRAFT_57836 [Melampsora larici-populina
98AG31]
Length = 58
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 42/58 (72%)
Query: 22 ICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
+ +LKWG EYKG LVS D YMN QLA+TEE +G G LGEV IRCNN+LYIR +
Sbjct: 1 MVRLKWGMEYKGYLVSMDSYMNLQLANTEEYQNGQSVGSLGEVFIRCNNVLYIRALSD 58
>gi|296806595|ref|XP_002844107.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238845409|gb|EEQ35071.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 88
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L ++ +LKWG EYKG LVS D YMN QL+ TEE IDG TG LGE
Sbjct: 4 VPLNPRPMLQSLINDDIVVRLKWGQTEYKGRLVSVDSYMNIQLSQTEEFIDGRNTGTLGE 63
Query: 64 VLIRCNN 70
VLIR
Sbjct: 64 VLIRVQQ 70
>gi|367017208|ref|XP_003683102.1| hypothetical protein TDEL_0H00320 [Torulaspora delbrueckii]
gi|359750766|emb|CCE93891.1| hypothetical protein TDEL_0H00320 [Torulaspora delbrueckii]
Length = 83
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFL L + V+ LK+ +Y+G LVSTD Y N +L EE +DG G +GE+
Sbjct: 5 PVNPKPFLRELVDQPVVVTLKFNSTQYRGTLVSTDNYFNVRLRDAEEFVDGRSRGTVGEI 64
Query: 65 LIRCNNILYI 74
+RCNN+L+I
Sbjct: 65 FVRCNNVLWI 74
>gi|403216561|emb|CCK71058.1| hypothetical protein KNAG_0F03940 [Kazachstania naganishii CBS
8797]
Length = 87
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHE-YKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P NPKPFL L + V+ KLK+ Y+G L+STD Y N QLA EEII G
Sbjct: 1 MSEITPVNPKPFLRSLVNERVVVKLKFNDTTYRGTLLSTDNYFNLQLADAEEIIGSTNRG 60
Query: 60 KLGEVLIRCNNILYI 74
+GE+ IRCNN+L+I
Sbjct: 61 TVGEIFIRCNNVLWI 75
>gi|68068315|ref|XP_676067.1| small nuclear ribonucleoprotein F [Plasmodium berghei strain
ANKA]
gi|70931673|ref|XP_737485.1| small nuclear ribonucleoprotein F [Plasmodium chabaudi chabaudi]
gi|56495585|emb|CAI00140.1| small nuclear ribonucleoprotein F, putative [Plasmodium berghei]
gi|56512916|emb|CAH79490.1| small nuclear ribonucleoprotein F, putative [Plasmodium chabaudi
chabaudi]
Length = 64
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 41/62 (66%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFLN L G VI KLKWG EYKG L S D YMN +L S EE I G G LGE+
Sbjct: 3 PLNPKPFLNSLVGNRVIIKLKWGMEYKGNLKSFDAYMNIRLTSAEEWIRGEYKGTLGEIF 62
Query: 66 IR 67
+R
Sbjct: 63 LR 64
>gi|27574150|pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574151|pdb|1N9S|B Chain B, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574152|pdb|1N9S|C Chain C, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574153|pdb|1N9S|D Chain D, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574154|pdb|1N9S|E Chain E, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574155|pdb|1N9S|F Chain F, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574156|pdb|1N9S|G Chain G, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574157|pdb|1N9S|H Chain H, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574158|pdb|1N9S|I Chain I, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574159|pdb|1N9S|J Chain J, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574160|pdb|1N9S|K Chain K, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574161|pdb|1N9S|L Chain L, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574162|pdb|1N9S|M Chain M, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574163|pdb|1N9S|N Chain N, Crystal Structure Of Yeast Smf In Spacegroup P43212
Length = 93
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
+S P NPKPFL L V KLK+ EY+G LVSTD Y N QL EE + G G
Sbjct: 14 ISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHG 73
Query: 60 KLGEVLIRCNNILYIR 75
LGE+ IR NN+LYIR
Sbjct: 74 TLGEIFIRSNNVLYIR 89
>gi|406861634|gb|EKD14688.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 80
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 12 FLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
L L + V+ +LKWG EYKG LVS D YMN QL+ EE ID T LG+VLIRCNN
Sbjct: 1 MLQNLVNEEVVIRLKWGQTEYKGRLVSIDSYMNIQLSGAEEWIDQEMTSVLGQVLIRCNN 60
Query: 71 ILYIRGAEEGDEEGEMR 87
+L+I+GA + + G+ +
Sbjct: 61 VLWIQGANQNNGNGDTK 77
>gi|401839563|gb|EJT42734.1| SMX3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 77
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFL L V KLK+ + EY+G LVSTD Y N QL EE + G G LGE+
Sbjct: 3 PVNPKPFLKGLVNHRVGVKLKFNNTEYRGTLVSTDNYFNLQLDEAEEFVGGVSHGILGEI 62
Query: 65 LIRCNNILYIR 75
IRCNN+LY+R
Sbjct: 63 FIRCNNVLYVR 73
>gi|448089999|ref|XP_004196959.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|448094377|ref|XP_004197990.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|359378381|emb|CCE84640.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|359379412|emb|CCE83609.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
Length = 100
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS+ P NPKPFL L K VI +LKW EYKG L++ D YMN QL T E + +
Sbjct: 1 MSSFQPINPKPFLKTLINKPVIVRLKWNRMEYKGKLLAIDNYMNLQLDHTYECMFENGER 60
Query: 60 K---LGEVLIRCNNILYIRGAEEGDEEGE 85
K +GE+ IRCNN+LYIR E+ E
Sbjct: 61 KEELIGEIFIRCNNVLYIREDVAASEKAE 89
>gi|313244351|emb|CBY15159.1| unnamed protein product [Oikopleura dioica]
Length = 61
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 30 EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGD-EEGEMRE 88
EYKG L++ DGYMN QL ++EE IDG G LGE+LIRCNN+LYIRG +E D EEGE +E
Sbjct: 2 EYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRCNNVLYIRGVDEEDAEEGESKE 61
>gi|326431600|gb|EGD77170.1| snRNP Sm protein F [Salpingoeca sp. ATCC 50818]
Length = 70
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 43/62 (69%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPK L LTGKSV KLKWG EY+G+L S D YMN QL +TEE IDG G LGE LIR
Sbjct: 7 NPKQLLQELTGKSVAVKLKWGMEYRGVLKSFDNYMNFQLLNTEEYIDGVSQGNLGECLIR 66
Query: 68 CN 69
+
Sbjct: 67 AH 68
>gi|399949557|gb|AFP65215.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949710|gb|AFP65368.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949722|gb|AFP65379.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949883|gb|AFP65540.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949895|gb|AFP65551.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399950053|gb|AFP65709.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
Length = 99
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 44/67 (65%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPK FL K ++ KLKWG EY+GIL S D YMN ++ + EE I G L EVLIR
Sbjct: 11 NPKFFLKTRQDKMILVKLKWGMEYRGILQSFDAYMNIRMKNAEEWIYNEKAGFLEEVLIR 70
Query: 68 CNNILYI 74
CNNILYI
Sbjct: 71 CNNILYI 77
>gi|345564134|gb|EGX47115.1| hypothetical protein AOL_s00097g161 [Arthrobotrys oligospora ATCC
24927]
Length = 67
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+P L L VI +LKWG EYKG LVS D YMN QL+ TEE ID TG LG+V
Sbjct: 5 PINPRPMLQGLINDFVIVRLKWGQTEYKGRLVSVDSYMNIQLSDTEEFIDNKSTGTLGQV 64
Query: 65 LIR 67
+IR
Sbjct: 65 MIR 67
>gi|215693002|dbj|BAG88422.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 59
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 41/53 (77%)
Query: 30 EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 82
EYKG LVS D YMN QLA+TEE IDG +G LGE+LIRCNN+LY+RG E E
Sbjct: 2 EYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDTE 54
>gi|145328286|ref|NP_001077889.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|62318628|dbj|BAD95080.1| hypothetical protein [Arabidopsis thaliana]
gi|330251203|gb|AEC06297.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 61
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 40/53 (75%)
Query: 30 EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 82
EYKG L S D YMN QL +TEE IDG TG LGE+LIRCNN+LY+RG E +E
Sbjct: 2 EYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEE 54
>gi|11602707|emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus
multilocularis]
Length = 83
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M P+ FL L+ G+ V+ KL G +Y+G+L+S DGYMN L TEE ++G K
Sbjct: 1 MQMSQKQTPRDFLKLIIGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYVEGQLKNK 60
Query: 61 LGEVLIRCNNILYIRGAEEG 80
G+ IR NN+ YI + G
Sbjct: 61 YGDTFIRGNNVFYISTQKRG 80
>gi|410952460|ref|XP_003982898.1| PREDICTED: small nuclear ribonucleoprotein F-like [Felis catus]
Length = 82
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP +PK FLN LTG+ V+ KLK K LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLDPKHFLNGLTGRPVMVKLKGEWSTKATLVSVDGYMNMQLANTEEHIDGVLSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
+LYIRG
Sbjct: 63 F----KVLYIRGV 71
>gi|60687576|gb|AAX30121.1| putative U6-snRNA-associated protein [Schistosoma japonicum]
Length = 78
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P+ FL L+ G+ V+ KL G +Y+G+L+S DGYMN L TEE +DG K G+ IR
Sbjct: 7 PRDFLKLIIGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYVDGQLKNKYGDTFIRG 66
Query: 69 NNILYI 74
NN+ YI
Sbjct: 67 NNVFYI 72
>gi|67901238|ref|XP_680875.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4]
gi|40742996|gb|EAA62186.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4]
Length = 873
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/62 (62%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 18 GKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 76
G VI +LKWG EYKG L S D YMN L TEE IDG TG LG VLIRCNNIL++
Sbjct: 802 GTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLVLIRCNNILWMGS 861
Query: 77 AE 78
AE
Sbjct: 862 AE 863
>gi|440802693|gb|ELR23622.1| Smlike protein LSm6, putative [Acanthamoeba castellanii str.
Neff]
Length = 84
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1 MSTP-LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
M+TP +P FL L+ G+ VI KL G Y+GILV+ DGYMN + TEE + G G
Sbjct: 1 MATPQAKKSPSDFLKLVLGRPVIVKLNSGVTYQGILVALDGYMNIAMEQTEEYVHGQLKG 60
Query: 60 KLGEVLIRCNNILYI 74
K G+ IR NN+LYI
Sbjct: 61 KYGDAFIRGNNVLYI 75
>gi|363750217|ref|XP_003645326.1| hypothetical protein Ecym_2813 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888959|gb|AET38509.1| Hypothetical protein Ecym_2813 [Eremothecium cymbalariae
DBVPG#7215]
Length = 87
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFL L K ++ LK+ + +YKG +VSTD Y N QL EE + G +G++
Sbjct: 6 PTNPKPFLRQLVDKYIVVTLKFNNTKYKGKMVSTDNYFNIQLTEAEEFVGDVSKGVVGDI 65
Query: 65 LIRCNNILYI 74
IRCNN+L+I
Sbjct: 66 FIRCNNVLWI 75
>gi|320167319|gb|EFW44218.1| U6 snRNA-associated Sm-like protein LSm6 [Capsaspora owczarzaki
ATCC 30864]
Length = 83
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
P P FL + GK V+ KL G EYKG+L DGYMN L TEE ++G K G
Sbjct: 4 APTKQGPSAFLRHIIGKPVVVKLNSGVEYKGLLACLDGYMNIALEQTEEYVNGQLKSKYG 63
Query: 63 EVLIRCNNILYIRGAEE 79
+ IR NN+LYI +++
Sbjct: 64 DAFIRGNNVLYISASKK 80
>gi|159475096|ref|XP_001695659.1| U6 small ribonucleoprotein F [Chlamydomonas reinhardtii]
gi|158275670|gb|EDP01446.1| U6 small ribonucleoprotein F [Chlamydomonas reinhardtii]
Length = 89
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T + P FL + GK+V+ KL G +Y+GIL DGYMN + TEE ++G K
Sbjct: 8 MTTGVSKTPAEFLKAIKGKAVLVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 67
Query: 61 LGEVLIRCNNILYI 74
G+ IR NN+LYI
Sbjct: 68 YGDAFIRGNNVLYI 81
>gi|449295539|gb|EMC91560.1| hypothetical protein BAUCODRAFT_38674 [Baudoinia compniacensis
UAMH 10762]
Length = 91
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L + V +LKWG EY G LVS D YMN QL+ EE ++G G LG+
Sbjct: 14 VPLNPRPMLQSLVNEEVTIRLKWGQTEYTGRLVSVDSYMNVQLSGAEEWVNGSSRGTLGQ 73
Query: 64 VLIR 67
VLIR
Sbjct: 74 VLIR 77
>gi|224126093|ref|XP_002329659.1| predicted protein [Populus trichocarpa]
gi|222870540|gb|EEF07671.1| predicted protein [Populus trichocarpa]
Length = 87
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNC--QLASTEEIIDGHCTGKLG 62
+P NPKPFLN LTGK+V L +++ +L+S M C QL +TEE IDG G LG
Sbjct: 4 VPVNPKPFLNNLTGKTVTESLL---QFQILLMSFVLLMECDLQLGNTEEYIDGQFIGNLG 60
Query: 63 EVLIRCNNILYIRGAEEGDE 82
E+LIR NN+LY+ G E +E
Sbjct: 61 EILIRRNNVLYLHGVPEDEE 80
>gi|119481967|ref|XP_001261012.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119409166|gb|EAW19115.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 84
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 15 LLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILY 73
L G +I +LKWG EYKG L S D YMN L TEE IDG TG LG VLIRCNNIL+
Sbjct: 10 LRVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNNILW 69
Query: 74 IRGAE 78
+ A+
Sbjct: 70 MGSAD 74
>gi|392586650|gb|EIW75986.1| LSM-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 98
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK VI +L G +Y+GIL DGYMN L TEE ++G T + G+ IR
Sbjct: 26 SPTDFLKGVVGKRVIVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGSVTNRYGDAFIR 85
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 86 GNNVLYISAAE 96
>gi|428183531|gb|EKX52389.1| hypothetical protein GUITHDRAFT_157136 [Guillardia theta
CCMP2712]
Length = 84
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P +P FL+ +TG+ V+ KL G +YKG+L DGYMN + TEE ++G K G+
Sbjct: 6 PSKRSPTEFLSQVTGRPVVVKLNTGVDYKGVLACLDGYMNIAMEQTEEYVNGQLKNKYGD 65
Query: 64 VLIRCNNILYI 74
IR NN+LYI
Sbjct: 66 AFIRGNNVLYI 76
>gi|256053086|ref|XP_002570039.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|256062525|ref|XP_002570343.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|350644790|emb|CCD60497.1| small nuclear ribonucleoprotein f (snrnp-f),putative [Schistosoma
mansoni]
Length = 122
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P+ FL L+ G+ V+ KL G +Y+G+L+S DGYMN L TEE IDG K G+ IR
Sbjct: 7 PRDFLKLIVGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYIDGQLKNKYGDTFIRG 66
Query: 69 NN 70
NN
Sbjct: 67 NN 68
>gi|72032500|ref|XP_799246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Strongylocentrotus purpuratus]
Length = 83
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
+T P FL L+ G+ V+ KL G +Y+G+L DGYMN L TEE ++G K
Sbjct: 5 TTARKQTPSDFLKLIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 64
Query: 62 GEVLIRCNNILYI 74
G+ IR NN+LYI
Sbjct: 65 GDAFIRGNNVLYI 77
>gi|330038475|ref|XP_003239607.1| small nuclear ribonucleoprotein E-like protein [Cryptomonas
paramecium]
gi|327206531|gb|AEA38709.1| small nuclear ribonucleoprotein E-like protein [Cryptomonas
paramecium]
Length = 88
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
PK +L L K + KLKWG +YKGIL+S D Y+N L +TEE + G LGE+ IRC
Sbjct: 17 PKIYLLSLKNKKIFIKLKWGVDYKGILMSVDRYLNLHLLNTEEWKNNLKIGYLGEIFIRC 76
Query: 69 NNILYIRGAEEG 80
NNI ++ +E
Sbjct: 77 NNIQFLTKIDEN 88
>gi|255078316|ref|XP_002502738.1| predicted protein [Micromonas sp. RCC299]
gi|226518004|gb|ACO63996.1| predicted protein [Micromonas sp. RCC299]
Length = 86
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEE 79
NN+LYI A++
Sbjct: 75 NNVLYISTAKD 85
>gi|124513268|ref|XP_001349990.1| Lsm6 homologue, putative [Plasmodium falciparum 3D7]
gi|23615407|emb|CAD52398.1| Lsm6 homologue, putative [Plasmodium falciparum 3D7]
Length = 77
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 41/71 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
PK F+ L G++VI +L G +YKGIL D MN L TEE DG T K + IR
Sbjct: 6 PKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIRG 65
Query: 69 NNILYIRGAEE 79
NN+ YIR EE
Sbjct: 66 NNVFYIRAIEE 76
>gi|409077094|gb|EKM77461.1| hypothetical protein AGABI1DRAFT_61513 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426191830|gb|EKV41769.1| hypothetical protein AGABI2DRAFT_212748 [Agaricus bisporus var.
bisporus H97]
Length = 95
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK VI +L G +Y+GIL DGYMN L TEE ++G T K G+ IR
Sbjct: 23 SPTDFLKNVVGKKVIVRLLSGVDYRGILSCLDGYMNIALEQTEEHVNGVVTNKYGDAFIR 82
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 83 GNNVLYISAAE 93
>gi|393219154|gb|EJD04642.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 97
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
TP +P FL + GK VI +L G +Y+G+L DGYMN L TEE ++G T K G
Sbjct: 20 TPPVGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEYVNGRVTNKYG 79
Query: 63 EVLIRCNNILYIRGAE 78
+ +R NN+LYI E
Sbjct: 80 DAFVRGNNVLYISADE 95
>gi|281340394|gb|EFB15978.1| hypothetical protein PANDA_007902 [Ailuropoda melanoleuca]
Length = 44
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA 47
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN Q++
Sbjct: 2 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQVS 44
>gi|384247792|gb|EIE21278.1| isoform CRA_b [Coccomyxa subellipsoidea C-169]
Length = 84
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+GIL DGYMN + STEE ++G K G+ IR
Sbjct: 14 PADFLKSIKGKPVVVKLNSGVDYRGILACLDGYMNIAMESTEEYVNGQLKNKYGDAFIRG 73
Query: 69 NNILYI 74
NN+LYI
Sbjct: 74 NNVLYI 79
>gi|255552678|ref|XP_002517382.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223543393|gb|EEF44924.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 62
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 82
+G L S D YMN QL +TEE IDG TG LGE+LIRCNN+LY+RG E ++
Sbjct: 5 QGFLASVDSYMNLQLGNTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDED 55
>gi|242796981|ref|XP_002482917.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
stipitatus ATCC 10500]
gi|218719505|gb|EED18925.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
stipitatus ATCC 10500]
Length = 357
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 18 GKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 76
G ++ +LKWG EY+G L S D YMN L TEE IDG TG LG VLIRCNNI +
Sbjct: 286 GTELVIRLKWGQTEYRGTLESIDSYMNVLLRDTEEYIDGKNTGSLGLVLIRCNNIFSMAS 345
Query: 77 AE 78
AE
Sbjct: 346 AE 347
>gi|213408613|ref|XP_002175077.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
gi|212003124|gb|EEB08784.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
Length = 75
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+ +P FLN + GK V +L G +YKGIL DGYMN L +TEE ++G T + G+
Sbjct: 1 MDSSPSEFLNKVIGKPVFIRLNSGVDYKGILSCLDGYMNLALENTEEYVNGKKTNEYGDA 60
Query: 65 LIRCNNILYIRGAEE 79
IR NN+LY+ E
Sbjct: 61 FIRGNNVLYVSAIRE 75
>gi|357163084|ref|XP_003579620.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Brachypodium distachyon]
Length = 97
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 21 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 80
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI +++ +G
Sbjct: 81 NNVLYISTSKQAVTDG 96
>gi|159129940|gb|EDP55054.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus
fumigatus A1163]
Length = 82
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 6 PCNPKPFLN--------LLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGH 56
P NP+PFL L G +I +LKWG EYKG L S D YMN L TEE IDG
Sbjct: 3 PVNPRPFLQARSFLIQRLRVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGK 62
Query: 57 CTGKLGEVLIRC 68
TG LG VLIR
Sbjct: 63 NTGTLGLVLIRV 74
>gi|336368839|gb|EGN97181.1| hypothetical protein SERLA73DRAFT_92211 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381639|gb|EGO22790.1| hypothetical protein SERLADRAFT_471211 [Serpula lacrymans var.
lacrymans S7.9]
Length = 98
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK VI +L G +Y+G+L DGYMN L TEE ++G T + G+ +R
Sbjct: 26 SPTDFLKGVVGKRVIVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGTLTNRYGDAFVR 85
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 86 GNNVLYISAAE 96
>gi|357149171|ref|XP_003575024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Brachypodium distachyon]
Length = 98
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ IR
Sbjct: 22 PSDFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 81
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ E+G
Sbjct: 82 NNVLYISTSKRTVEDG 97
>gi|424513391|emb|CCO66013.1| U6 snRNA-associated Sm-like protein LSm6 [Bathycoccus prasinos]
Length = 82
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
+T P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G K
Sbjct: 6 TTSASKTPADFLKSIRGKRVVVKLNSGVDYRGILACLDGYMNIAMEHTEEYVNGQLKNKY 65
Query: 62 GEVLIRCNNILYIRGAE 78
G+ IR NN+LYI A+
Sbjct: 66 GDAFIRGNNVLYISLAK 82
>gi|156358627|ref|XP_001624618.1| predicted protein [Nematostella vectensis]
gi|156211409|gb|EDO32518.1| predicted protein [Nematostella vectensis]
Length = 80
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL L+ G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ IR
Sbjct: 7 PSDFLKLIIGRPVVVKLNNGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+LYI
Sbjct: 67 NNVLYI 72
>gi|308498301|ref|XP_003111337.1| CRE-LSM-6 protein [Caenorhabditis remanei]
gi|308240885|gb|EFO84837.1| CRE-LSM-6 protein [Caenorhabditis remanei]
Length = 77
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DGYMN L TEE +G K G+ IR
Sbjct: 6 NPSEFLKRVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 66 GNNVLYI 72
>gi|170114328|ref|XP_001888361.1| predicted protein [Laccaria bicolor S238N-H82]
gi|189028838|sp|B0DWN3.1|LSM6_LACBS RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|164636673|gb|EDR00966.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 99
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK VI +L G +Y+G+L DGYMN L TEE ++G T + G+ IR
Sbjct: 27 SPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIR 86
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 87 GNNVLYISAAE 97
>gi|313231300|emb|CBY08415.1| unnamed protein product [Oikopleura dioica]
Length = 82
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
+T NP FL + G V+ KL G +Y+G+L DGYMN L TEE ++G K
Sbjct: 4 TTSKKQNPSEFLRKIIGNPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 63
Query: 62 GEVLIRCNNILYI 74
G+ IR NN+LYI
Sbjct: 64 GDTFIRGNNVLYI 76
>gi|354459633|pdb|3SWN|B Chain B, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459636|pdb|3SWN|E Chain E, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459639|pdb|3SWN|Q Chain Q, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459642|pdb|3SWN|T Chain T, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 77
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+ +P FLN + GK V+ +L G +YKGIL DGYMN L TEE ++G T G+
Sbjct: 3 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 62
Query: 65 LIRCNNILYIRGAEE 79
IR NN+LY+ ++
Sbjct: 63 FIRGNNVLYVSALDD 77
>gi|19115292|ref|NP_594380.1| U6 snRNP-associated protein Lsm6 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720076|sp|Q9UUI1.1|LSM6_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|5832405|emb|CAB54975.1| U6 snRNP-associated protein Lsm6 (predicted) [Schizosaccharomyces
pombe]
Length = 75
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+ +P FLN + GK V+ +L G +YKGIL DGYMN L TEE ++G T G+
Sbjct: 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 60
Query: 65 LIRCNNILYIRGAEE 79
IR NN+LY+ ++
Sbjct: 61 FIRGNNVLYVSALDD 75
>gi|45190332|ref|NP_984586.1| AEL274Cp [Ashbya gossypii ATCC 10895]
gi|44983228|gb|AAS52410.1| AEL274Cp [Ashbya gossypii ATCC 10895]
gi|374107801|gb|AEY96708.1| FAEL274Cp [Ashbya gossypii FDAG1]
Length = 86
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NPKPFL L + ++ LK+ + Y+G L+STD Y N +L EE I G +G++
Sbjct: 6 PTNPKPFLRQLVDQYIVVTLKFNNTRYRGKLMSTDNYFNIRLTEAEEFIGDVSKGMVGDL 65
Query: 65 LIRCNNILYI 74
IRCNN+L+I
Sbjct: 66 FIRCNNVLWI 75
>gi|303283108|ref|XP_003060845.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457196|gb|EEH54495.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 85
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+G+L DGYMN + TEE ++G K G+ IR
Sbjct: 14 PADFLKSIKGKQVVVKLNSGVDYRGVLACLDGYMNIAMEETEEYVNGQLKNKYGDAFIRG 73
Query: 69 NNILYI 74
NN+LYI
Sbjct: 74 NNVLYI 79
>gi|449445280|ref|XP_004140401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cucumis
sativus]
gi|449498381|ref|XP_004160523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cucumis
sativus]
Length = 92
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEEGDEEGE 85
NN+LYI ++ EG
Sbjct: 75 NNVLYISTSKRTLAEGS 91
>gi|388506496|gb|AFK41314.1| unknown [Lotus japonicus]
Length = 90
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 14 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 73
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ EG
Sbjct: 74 NNVLYISTSKRTLAEG 89
>gi|221121818|ref|XP_002166122.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Hydra
magnipapillata]
Length = 79
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G+ V+ KL G +Y+G+L S DGYMN L TEE ++G K G+ +R
Sbjct: 6 DPSDFLKQIIGRPVVVKLNSGVDYRGVLGSLDGYMNIVLEQTEEYVNGQLKNKYGDAFLR 65
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 66 GNNVLYI 72
>gi|17510579|ref|NP_490883.1| Protein LSM-6 [Caenorhabditis elegans]
gi|373219432|emb|CCD67971.1| Protein LSM-6 [Caenorhabditis elegans]
Length = 77
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DGYMN L TEE +G K G+ IR
Sbjct: 6 NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 66 GNNVLYI 72
>gi|356568356|ref|XP_003552377.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Glycine
max]
Length = 91
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ EG
Sbjct: 75 NNVLYISTSKRTLAEG 90
>gi|225434160|ref|XP_002278412.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis
vinifera]
gi|296084324|emb|CBI24712.3| unnamed protein product [Vitis vinifera]
Length = 91
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ EG
Sbjct: 75 NNVLYISTSKRTLAEG 90
>gi|357474665|ref|XP_003607617.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355508672|gb|AES89814.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|388502230|gb|AFK39181.1| unknown [Medicago truncatula]
Length = 91
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ EG
Sbjct: 75 NNVLYISTSKRTLAEG 90
>gi|268563747|ref|XP_002638924.1| C. briggsae CBR-LSM-6 protein [Caenorhabditis briggsae]
Length = 77
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DGYMN L TEE +G K G+ IR
Sbjct: 6 NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 66 GNNVLYI 72
>gi|341883036|gb|EGT38971.1| hypothetical protein CAEBREN_02711 [Caenorhabditis brenneri]
gi|341889446|gb|EGT45381.1| hypothetical protein CAEBREN_13550 [Caenorhabditis brenneri]
Length = 77
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DGYMN L TEE +G K G+ IR
Sbjct: 6 NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 66 GNNVLYI 72
>gi|351721500|ref|NP_001237723.1| uncharacterized protein LOC100306112 [Glycine max]
gi|255627589|gb|ACU14139.1| unknown [Glycine max]
Length = 91
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ EG
Sbjct: 75 NNVLYISTSKRTLAEG 90
>gi|426232516|ref|XP_004010268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Ovis
aries]
Length = 117
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+SV+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 45 PSNFLKQIIGQSVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 104
Query: 69 NNILYI 74
NN+LYI
Sbjct: 105 NNVLYI 110
>gi|443703278|gb|ELU00915.1| hypothetical protein CAPTEDRAFT_152822 [Capitella teleta]
Length = 79
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G++V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 7 PSDFLKQIIGRTVVVKLNSGVDYRGVLACLDGYMNIALEHTEEYVNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+LYI
Sbjct: 67 NNVLYI 72
>gi|116782342|gb|ABK22473.1| unknown [Picea sitchensis]
Length = 91
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ EG
Sbjct: 75 NNVLYISTSKRSLGEG 90
>gi|345567352|gb|EGX50284.1| hypothetical protein AOL_s00076g48 [Arthrobotrys oligospora ATCC
24927]
Length = 86
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G + KL G EYKG L S DGYMN L +TEE ++G + G+V IR
Sbjct: 16 DPSSFLSEIHGAPITVKLNSGVEYKGELQSVDGYMNIALENTEEYVNGERKNRYGDVFIR 75
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 76 GNNVLYI 82
>gi|260791583|ref|XP_002590808.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
gi|229276005|gb|EEN46819.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
Length = 81
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 7 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+LYI
Sbjct: 67 NNVLYI 72
>gi|452823027|gb|EME30041.1| U6 snRNA-associated Sm-like protein LSm6 isoform 1 [Galdieria
sulphuraria]
Length = 89
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ KL G EYKG+L DGYMN + TEE + K G+ IR
Sbjct: 11 SPADFLKQVVGKPVVVKLNSGVEYKGVLACLDGYMNIAMEQTEEHVGTQLKNKYGDTFIR 70
Query: 68 CNNILYIRGAEEGDEE 83
NN+LYI ++G +
Sbjct: 71 GNNVLYIAAQKKGKQR 86
>gi|340381514|ref|XP_003389266.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Amphimedon queenslandica]
Length = 80
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN L TEE I G K G+ IR
Sbjct: 7 PNDFLKQIAGRPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYIGGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+LYI
Sbjct: 67 NNVLYI 72
>gi|405968751|gb|EKC33791.1| U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas]
Length = 79
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 7 PSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+LYI
Sbjct: 67 NNVLYI 72
>gi|353243979|emb|CCA75450.1| probable U6 snRNA-associated Sm-like protein LSm6 [Piriformospora
indica DSM 11827]
Length = 95
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +YKG+L DGYMN + TEE ++G T + G+ IR
Sbjct: 23 SPNDFLKAVVGKRVVVRLVSGVDYKGVLQCLDGYMNIAMEQTEEHVNGVITNRYGDAFIR 82
Query: 68 CNNILYIRGAE 78
NN+LYI E
Sbjct: 83 GNNVLYISAGE 93
>gi|116792892|gb|ABK26542.1| unknown [Picea sitchensis]
Length = 91
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ EG
Sbjct: 75 NNVLYISTSKRTLGEG 90
>gi|123474198|ref|XP_001320283.1| Sm protein [Trichomonas vaginalis G3]
gi|121903085|gb|EAY08060.1| Sm protein [Trichomonas vaginalis G3]
Length = 98
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P+ F+ L K ++ KLKW + EY G L+S D MN L+ T E + G G
Sbjct: 1 MSETTKYFPQKFMESLLNKQIVIKLKWENIEYVGTLISFDERMNIHLSETSEYVGGKTEG 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
+G+V+IRCNNIL+IR E
Sbjct: 61 VMGDVIIRCNNILHIREKPE 80
>gi|5901998|ref|NP_009011.1| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|113865835|ref|NP_084421.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|148234781|ref|NP_001087318.1| Sm protein F [Xenopus laevis]
gi|167583548|ref|NP_001107991.1| U6 snRNA-associated Sm-like protein LSm6 [Bos taurus]
gi|186910275|ref|NP_001119557.1| U6 snRNA-associated Sm-like protein LSm6 [Rattus norvegicus]
gi|284172395|ref|NP_001165068.1| Sm protein F [Xenopus (Silurana) tropicalis]
gi|300797601|ref|NP_001177933.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|350536543|ref|NP_001232484.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|388454641|ref|NP_001253894.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|118089868|ref|XP_420431.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gallus gallus]
gi|149637763|ref|XP_001510547.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Ornithorhynchus anatinus]
gi|291401158|ref|XP_002716966.1| PREDICTED: Sm protein F [Oryctolagus cuniculus]
gi|293352714|ref|XP_002728048.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|296195455|ref|XP_002745354.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Callithrix jacchus]
gi|297674437|ref|XP_002815234.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pongo
abelii]
gi|301761728|ref|XP_002916283.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Ailuropoda melanoleuca]
gi|301761730|ref|XP_002916284.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Ailuropoda melanoleuca]
gi|326918386|ref|XP_003205470.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Meleagris gallopavo]
gi|327273948|ref|XP_003221741.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Anolis
carolinensis]
gi|332217354|ref|XP_003257824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Nomascus leucogenys]
gi|332217356|ref|XP_003257825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Nomascus leucogenys]
gi|332217358|ref|XP_003257826.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Nomascus leucogenys]
gi|332820272|ref|XP_003310523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Pan troglodytes]
gi|332820274|ref|XP_003339112.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|332820276|ref|XP_003310524.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Pan troglodytes]
gi|332820278|ref|XP_003310526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Pan troglodytes]
gi|332820280|ref|XP_003310527.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Pan troglodytes]
gi|335293789|ref|XP_003357054.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Sus
scrofa]
gi|338722510|ref|XP_003364554.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Equus
caballus]
gi|344291754|ref|XP_003417595.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Loxodonta africana]
gi|345781166|ref|XP_855162.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Canis lupus familiaris]
gi|345781168|ref|XP_003432092.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Canis lupus familiaris]
gi|348582250|ref|XP_003476889.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cavia
porcellus]
gi|354477192|ref|XP_003500806.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Cricetulus griseus]
gi|390460377|ref|XP_003732476.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Callithrix jacchus]
gi|392332759|ref|XP_003752686.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|395542575|ref|XP_003773202.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Sarcophilus
harrisii]
gi|395834523|ref|XP_003790249.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Otolemur
garnettii]
gi|397489777|ref|XP_003815894.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
paniscus]
gi|402870580|ref|XP_003899290.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Papio anubis]
gi|402870582|ref|XP_003899291.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Papio anubis]
gi|410038770|ref|XP_003950473.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410038772|ref|XP_003950474.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410956783|ref|XP_003985017.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Felis catus]
gi|426246981|ref|XP_004017265.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Ovis aries]
gi|426345621|ref|XP_004040503.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Gorilla gorilla gorilla]
gi|426345623|ref|XP_004040504.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gorilla gorilla gorilla]
gi|426345625|ref|XP_004040505.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Gorilla gorilla gorilla]
gi|426345627|ref|XP_004040506.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Gorilla gorilla gorilla]
gi|426345629|ref|XP_004040507.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Gorilla gorilla gorilla]
gi|426345631|ref|XP_004040508.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 6
[Gorilla gorilla gorilla]
gi|441619228|ref|XP_004088560.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Nomascus
leucogenys]
gi|61227727|sp|P62312.1|LSM6_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|61227728|sp|P62313.1|LSM6_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|5919153|gb|AAD56230.1|AF182292_1 U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|5262862|emb|CAB45869.1| Lsm6 protein [Homo sapiens]
gi|12859166|dbj|BAB31555.1| unnamed protein product [Mus musculus]
gi|16359118|gb|AAH16026.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|20987896|gb|AAH30427.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|26347205|dbj|BAC37251.1| unnamed protein product [Mus musculus]
gi|51593502|gb|AAH78551.1| MGC85411 protein [Xenopus laevis]
gi|63995242|gb|AAY41032.1| unknown [Homo sapiens]
gi|67514294|gb|AAH98230.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|68534470|gb|AAH99484.1| Lsm6 protein [Mus musculus]
gi|74179952|dbj|BAE36530.1| unnamed protein product [Mus musculus]
gi|74196623|dbj|BAE34418.1| unnamed protein product [Mus musculus]
gi|74202626|dbj|BAE24870.1| unnamed protein product [Mus musculus]
gi|109939818|gb|AAI18349.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|110645766|gb|AAI18890.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|119226360|gb|AAI28976.1| MGC85411 protein [Xenopus laevis]
gi|119625434|gb|EAX05029.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625435|gb|EAX05030.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625436|gb|EAX05031.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123983026|gb|ABM83254.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|148678915|gb|EDL10862.1| mCG7981, isoform CRA_a [Mus musculus]
gi|148678917|gb|EDL10864.1| mCG7981, isoform CRA_a [Mus musculus]
gi|149037959|gb|EDL92319.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037960|gb|EDL92320.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037961|gb|EDL92321.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149058701|gb|EDM09858.1| rCG63582, isoform CRA_b [Rattus norvegicus]
gi|157928024|gb|ABW03308.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|163916395|gb|AAI57145.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|189053256|dbj|BAG35062.1| unnamed protein product [Homo sapiens]
gi|197127464|gb|ACH43962.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|261860094|dbj|BAI46569.1| U6 snRNA-associated Sm-like protein LSm6 [synthetic construct]
gi|296478782|tpg|DAA20897.1| TPA: Sm protein F [Bos taurus]
gi|344244120|gb|EGW00224.1| U6 snRNA-associated Sm-like protein LSm6 [Cricetulus griseus]
gi|351714530|gb|EHB17449.1| U6 snRNA-associated Sm-like protein LSm6 [Heterocephalus glaber]
gi|355687640|gb|EHH26224.1| hypothetical protein EGK_16139 [Macaca mulatta]
gi|355762049|gb|EHH61876.1| hypothetical protein EGM_20027 [Macaca fascicularis]
gi|380783335|gb|AFE63543.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|384945050|gb|AFI36130.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|410287906|gb|JAA22553.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410287908|gb|JAA22554.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410349693|gb|JAA41450.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395471|gb|JAA44792.1| Putative small nuclear ribonucleoprotein f [Desmodus rotundus]
gi|431918291|gb|ELK17518.1| U6 snRNA-associated Sm-like protein LSm6 [Pteropus alecto]
gi|449271295|gb|EMC81755.1| U6 snRNA-associated Sm-like protein LSm6 [Columba livia]
Length = 80
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|346470245|gb|AEO34967.1| hypothetical protein [Amblyomma maculatum]
gi|427785925|gb|JAA58414.1| Putative small nuclear ribonucleoprotein f [Rhipicephalus
pulchellus]
gi|442749057|gb|JAA66688.1| Putative small nuclear ribonucleoprotein f [Ixodes ricinus]
Length = 79
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 7 PSEFLKQIIGRPVVVKLNSGLDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+LYI
Sbjct: 67 NNVLYI 72
>gi|48716974|dbj|BAD23667.1| putative Sm protein F [Oryza sativa Japonica Group]
gi|215765012|dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622927|gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group]
Length = 101
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 25 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 84
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ +G
Sbjct: 85 NNVLYISTSKRTLTDG 100
>gi|218190824|gb|EEC73251.1| hypothetical protein OsI_07364 [Oryza sativa Indica Group]
Length = 97
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 21 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 80
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ +G
Sbjct: 81 NNVLYISTSKRTLTDG 96
>gi|387914462|gb|AFK10840.1| U6 snRNA-associated Sm-like protein LSm6 [Callorhinchus milii]
Length = 80
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|402219102|gb|EJT99176.1| U6 snRNA-associated Sm-like protein LSm6 [Dacryopinax sp. DJM-731
SS1]
Length = 88
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
ST P FL + GK V+ +L G +Y+G+L DGYMN L TEE +DG +
Sbjct: 10 STGAVGTPADFLKGVIGKRVVVRLISGVDYQGLLSCLDGYMNIALEQTEEYVDGAVVNRY 69
Query: 62 GEVLIRCNNILYIRGAEE 79
G+ IR NN+LYI E
Sbjct: 70 GDAFIRGNNVLYISAMES 87
>gi|119184466|ref|XP_001243137.1| hypothetical protein CIMG_07033 [Coccidioides immitis RS]
gi|303320391|ref|XP_003070195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|121931667|sp|Q1DRN0.1|LSM6_COCIM RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|240109881|gb|EER28050.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320041261|gb|EFW23194.1| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides posadasii
str. Silveira]
gi|392866021|gb|EAS31886.2| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides immitis
RS]
Length = 80
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG SV KL G YKG L S DGYMN L T+E ++G G+V +R
Sbjct: 11 DPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|291225628|ref|XP_002732802.1| PREDICTED: Sm protein F-like [Saccoglossus kowalevskii]
Length = 79
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 7 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+LYI
Sbjct: 67 NNVLYI 72
>gi|168041946|ref|XP_001773451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675327|gb|EDQ61824.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 91
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 17 PNDFLKSIKGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 76
Query: 69 NNILYI 74
NN+LYI
Sbjct: 77 NNVLYI 82
>gi|115458068|ref|NP_001052634.1| Os04g0388900 [Oryza sativa Japonica Group]
gi|113564205|dbj|BAF14548.1| Os04g0388900 [Oryza sativa Japonica Group]
gi|215693219|dbj|BAG88601.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194749|gb|EEC77176.1| hypothetical protein OsI_15663 [Oryza sativa Indica Group]
gi|222628763|gb|EEE60895.1| hypothetical protein OsJ_14579 [Oryza sativa Japonica Group]
Length = 97
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 21 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 80
Query: 69 NNILYIRGAEE 79
NN+LYI ++
Sbjct: 81 NNVLYISTSKR 91
>gi|212722680|ref|NP_001131392.1| uncharacterized protein LOC100192719 [Zea mays]
gi|194691404|gb|ACF79786.1| unknown [Zea mays]
gi|195605878|gb|ACG24769.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413918138|gb|AFW58070.1| Small nuclear ribonucleoprotein F [Zea mays]
Length = 95
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 19 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 78
Query: 69 NNILYI 74
NN+LYI
Sbjct: 79 NNVLYI 84
>gi|224098796|ref|XP_002311269.1| predicted protein [Populus trichocarpa]
gi|118483023|gb|ABK93423.1| unknown [Populus trichocarpa]
gi|222851089|gb|EEE88636.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|224112373|ref|XP_002316168.1| predicted protein [Populus trichocarpa]
gi|118482915|gb|ABK93371.1| unknown [Populus trichocarpa]
gi|222865208|gb|EEF02339.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|115446301|ref|NP_001046930.1| Os02g0510100 [Oryza sativa Japonica Group]
gi|113536461|dbj|BAF08844.1| Os02g0510100, partial [Oryza sativa Japonica Group]
Length = 96
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 20 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 79
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ +G
Sbjct: 80 NNVLYISTSKRTLTDG 95
>gi|297824373|ref|XP_002880069.1| hypothetical protein ARALYDRAFT_903785 [Arabidopsis lyrata subsp.
lyrata]
gi|297325908|gb|EFH56328.1| hypothetical protein ARALYDRAFT_903785 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G K G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFVRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|355700155|gb|AES01358.1| LSM6-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 86
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 15 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|242075544|ref|XP_002447708.1| hypothetical protein SORBIDRAFT_06g013920 [Sorghum bicolor]
gi|241938891|gb|EES12036.1| hypothetical protein SORBIDRAFT_06g013920 [Sorghum bicolor]
Length = 97
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 21 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 80
Query: 69 NNILYI 74
NN+LYI
Sbjct: 81 NNVLYI 86
>gi|326504448|dbj|BAJ91056.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511968|dbj|BAJ95965.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517080|dbj|BAJ99906.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 99
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 23 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 82
Query: 69 NNILYIRGAEEGDEEG 84
NN+LYI ++ +G
Sbjct: 83 NNVLYISTSKRPLTDG 98
>gi|405968315|gb|EKC33396.1| Nucleolar protein 6 [Crassostrea gigas]
Length = 1150
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 1078 PSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 1137
Query: 69 NNILYI 74
NN+LYI
Sbjct: 1138 NNVLYI 1143
>gi|255587821|ref|XP_002534408.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223525355|gb|EEF27977.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 91
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|302683352|ref|XP_003031357.1| hypothetical protein SCHCODRAFT_68498 [Schizophyllum commune
H4-8]
gi|300105049|gb|EFI96454.1| hypothetical protein SCHCODRAFT_68498 [Schizophyllum commune
H4-8]
Length = 97
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK VI +L G +Y+G+L DGYMN L TEE + G + G+ IR
Sbjct: 25 SPTDFLKGVVGKRVIVRLISGVDYRGVLSCLDGYMNIALEQTEEHVGGRVVNRYGDAFIR 84
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 85 GNNVLYISAAE 95
>gi|393907321|gb|EFO22723.2| U6 snRNA-associated Sm-like protein LSm6 [Loa loa]
Length = 77
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DG+MN L TEE +G K G+ IR
Sbjct: 6 NPSEFLKQIIGKPVVVKLNSGVDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFIR 65
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 66 GNNVLYI 72
>gi|302798158|ref|XP_002980839.1| hypothetical protein SELMODRAFT_268399 [Selaginella
moellendorffii]
gi|302815369|ref|XP_002989366.1| hypothetical protein SELMODRAFT_235757 [Selaginella
moellendorffii]
gi|300142944|gb|EFJ09640.1| hypothetical protein SELMODRAFT_235757 [Selaginella
moellendorffii]
gi|300151378|gb|EFJ18024.1| hypothetical protein SELMODRAFT_268399 [Selaginella
moellendorffii]
Length = 87
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 14 PTDFLRSIKGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 73
Query: 69 NNILYIRGAEE 79
NN+LYI +++
Sbjct: 74 NNVLYISTSKK 84
>gi|168005297|ref|XP_001755347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693475|gb|EDQ79827.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 91
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ IR
Sbjct: 17 PADFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 76
Query: 69 NNILYI 74
NN+LYI
Sbjct: 77 NNVLYI 82
>gi|297817284|ref|XP_002876525.1| hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp.
lyrata]
gi|297322363|gb|EFH52784.1| hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|402590496|gb|EJW84426.1| U6 small ribonucleoprotein F [Wuchereria bancrofti]
Length = 77
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DG+MN L TEE +G K G+ IR
Sbjct: 6 NPSEFLKQIIGKPVVVKLNSGIDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFIR 65
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 66 GNNVLYI 72
>gi|401826016|ref|XP_003887102.1| Sm-like ribonucleoprotein [Encephalitozoon hellem ATCC 50504]
gi|392998260|gb|AFM98121.1| Sm-like ribonucleoprotein [Encephalitozoon hellem ATCC 50504]
Length = 81
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P NPK FL + GKSV+ LKWG Y+G+LV +D Y N L E DG + ++GE
Sbjct: 9 PPKENPKQFLQRMKGKSVVVSLKWGQSYEGVLVMSDNYFNILLDKCIE-KDGEASMEVGE 67
Query: 64 VLIRCNNILYI 74
V IRCNNI I
Sbjct: 68 VSIRCNNIKSI 78
>gi|350636434|gb|EHA24794.1| hypothetical protein ASPNIDRAFT_183031 [Aspergillus niger ATCC
1015]
Length = 80
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 6 PCNPKPFLNL------LTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCT 58
P NP+PFL L G +I +LKWG EYKG L S D YMN L TEE IDG T
Sbjct: 3 PVNPRPFLQARYAPGPLVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNT 62
Query: 59 GKLGEVLIRC 68
G LG VLI
Sbjct: 63 GTLGLVLISV 72
>gi|384492879|gb|EIE83370.1| U6 snRNA-associated Sm-like protein LSm6 [Rhizopus delemar RA
99-880]
Length = 79
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G++V KL G +YKG L DGYMN L +TEE +DG K G+ IR
Sbjct: 10 PTDFLGTVLGQTVKVKLNSGIDYKGTLACLDGYMNIALENTEEYVDGRLKNKYGDTFIRG 69
Query: 69 NNILYI 74
NN+LYI
Sbjct: 70 NNVLYI 75
>gi|154278836|ref|XP_001540231.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|189028837|sp|A6R363.1|LSM6_AJECN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|150412174|gb|EDN07561.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|225554344|gb|EEH02643.1| LSM domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 80
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|403272388|ref|XP_003928047.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Saimiri
boliviensis boliviensis]
Length = 114
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 42 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 101
Query: 69 NNILYI 74
NN+LYI
Sbjct: 102 NNVLYI 107
>gi|70951963|ref|XP_745182.1| u6 snRNA-associated sm-like protein [Plasmodium chabaudi
chabaudi]
gi|56525424|emb|CAH79798.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
chabaudi chabaudi]
Length = 77
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 40/71 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
PK F+ L GK+VI +L G +YKGIL D MN L TEE DG K + IR
Sbjct: 6 PKYFVQSLKGKTVIVRLNNGSDYKGILACLDERMNVTLEQTEEYFDGELIEKYNDAFIRG 65
Query: 69 NNILYIRGAEE 79
NN+ YIR ++
Sbjct: 66 NNVFYIRAIDD 76
>gi|198429171|ref|XP_002120650.1| PREDICTED: similar to conserved hypothetical protein [Ciona
intestinalis]
Length = 82
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 7 PSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+ YI
Sbjct: 67 NNVFYI 72
>gi|196014390|ref|XP_002117054.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190580276|gb|EDV20360.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 79
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN L TEE I+G K G+ IR
Sbjct: 7 PSEFLKNVIGRPVVVKLNSGVDYRGILTCLDGYMNIALEQTEEYINGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+ YI
Sbjct: 67 NNVFYI 72
>gi|307110699|gb|EFN58935.1| hypothetical protein CHLNCDRAFT_34269 [Chlorella variabilis]
Length = 85
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 14 PADFLKSIKGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDCFIRG 73
Query: 69 NNILYI 74
NN+LYI
Sbjct: 74 NNVLYI 79
>gi|339244427|ref|XP_003378139.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316972974|gb|EFV56616.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 373
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL L GK V+ KL G +Y+GIL DGY+N L TEE +G K G+ IR
Sbjct: 301 PSEFLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYGDAFIRG 360
Query: 69 NNILYI 74
NN+LYI
Sbjct: 361 NNVLYI 366
>gi|339244381|ref|XP_003378116.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316973000|gb|EFV56639.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 327
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL L GK V+ KL G +Y+GIL DGY+N L TEE +G K G+ IR
Sbjct: 255 PSEFLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYGDAFIRG 314
Query: 69 NNILYI 74
NN+LYI
Sbjct: 315 NNVLYI 320
>gi|254569300|ref|XP_002491760.1| Core Sm protein Sm F [Komagataella pastoris GS115]
gi|238031557|emb|CAY69480.1| Core Sm protein Sm F [Komagataella pastoris GS115]
Length = 90
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQL-ASTEEI--IDGHCTGKL 61
P NPKPFL L +SVI KLK + EY G L+S D YMN L +ST+E I T
Sbjct: 5 PINPKPFLKSLINRSVIVKLKSSNVEYHGFLLSVDNYMNLSLDSSTKEFDPITEELTPLG 64
Query: 62 GEVLIRCNNILYIRGAEE 79
++ IRCNN+L+I EE
Sbjct: 65 SDLFIRCNNVLWISTTEE 82
>gi|58387098|ref|XP_315329.2| AGAP005314-PA [Anopheles gambiae str. PEST]
gi|170059581|ref|XP_001865425.1| Lsm6 protein [Culex quinquefasciatus]
gi|55238130|gb|EAA11294.2| AGAP005314-PA [Anopheles gambiae str. PEST]
gi|167878291|gb|EDS41674.1| Lsm6 protein [Culex quinquefasciatus]
gi|312381097|gb|EFR26918.1| hypothetical protein AND_25803 [Anopheles darlingi]
gi|403182446|gb|EJY57393.1| AAEL017161-PA [Aedes aegypti]
Length = 79
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+N + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FINQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALDQTEEYVNGQLKNKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|366989381|ref|XP_003674458.1| hypothetical protein NCAS_0A15220 [Naumovozyma castellii CBS
4309]
gi|342300321|emb|CCC68080.1| hypothetical protein NCAS_0A15220 [Naumovozyma castellii CBS
4309]
Length = 74
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 19 KSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K V+ LK+ +YKG LVSTD Y N QL++ EEI+ G GK+G++ IRCNN+L+I
Sbjct: 2 KPVVVTLKFNRTQYKGTLVSTDNYFNVQLSNAEEIVAGEHKGKVGDIFIRCNNVLWI 58
>gi|296425521|ref|XP_002842289.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638552|emb|CAZ86480.1| unnamed protein product [Tuber melanosporum]
Length = 80
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 1 MSTPL-PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS P +P FL+ + G + KL G EYKG L S DGYMN L T E + G
Sbjct: 1 MSDPQETSDPSTFLSEIIGAPITVKLNSGVEYKGELSSVDGYMNIALEKTVEYVGGQVRN 60
Query: 60 KLGEVLIRCNNILYI 74
+ G+V IR NN+LYI
Sbjct: 61 RYGDVFIRGNNVLYI 75
>gi|328766806|gb|EGF76858.1| hypothetical protein BATDEDRAFT_92275 [Batrachochytrium
dendrobatidis JAM81]
Length = 78
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P +P+ FL + G+ V+ KL G +Y+GIL DGYMN L T+E +DG G+
Sbjct: 1 MPRSPQEFLQHVIGQPVVVKLNSGVDYRGILACLDGYMNIALEETKEYVDGVEKHDYGDC 60
Query: 65 LIRCNNILYIRGAEEGDE 82
IR NN+LYI ++ +
Sbjct: 61 FIRGNNVLYIAAQKQAAQ 78
>gi|229367210|gb|ACQ58585.1| U6 snRNA-associated Sm-like protein LSm6 [Anoplopoma fimbria]
Length = 80
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYGDAFLRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|82753616|ref|XP_727750.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium
yoelii yoelii 17XNL]
gi|23483747|gb|EAA19315.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium
yoelii yoelii]
Length = 77
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
PK F+ L G++VI +L G +YKGIL D MN L TEE DG K + IR
Sbjct: 6 PKYFVQSLKGRTVIVRLNNGSDYKGILACLDERMNVTLEQTEEYFDGELIEKYNDAFIRG 65
Query: 69 NNILYIRGAEE 79
NN+ YIR ++
Sbjct: 66 NNVFYIRAIDD 76
>gi|21554327|gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 91
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ VI KL G +Y+G L DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVIVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|432847198|ref|XP_004065979.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Oryzias
latipes]
Length = 80
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYGDAFLRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|401406794|ref|XP_003882846.1| U6 snRNA-associated Sm-like protein LSm6,related [Neospora
caninum Liverpool]
gi|325117262|emb|CBZ52814.1| U6 snRNA-associated Sm-like protein LSm6,related [Neospora
caninum Liverpool]
Length = 82
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P FL + G+ V+ +L G +Y+G+L D MN + TEE +DG+
Sbjct: 1 MATNAKKSPSDFLQKVIGQRVVVRLSNGTDYRGVLTCLDDRMNIAMDKTEEFVDGNFVAA 60
Query: 61 LGEVLIRCNNILYIRGAEE 79
G LIR NN+LYI +E
Sbjct: 61 YGLSLIRGNNVLYISAVDE 79
>gi|348524416|ref|XP_003449719.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Oreochromis niloticus]
gi|410917980|ref|XP_003972464.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Takifugu rubripes]
gi|47217355|emb|CAG11060.1| unnamed protein product [Tetraodon nigroviridis]
Length = 80
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYGDAFLRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|68074967|ref|XP_679400.1| u6 snRNA-associated sm-like protein [Plasmodium berghei strain
ANKA]
gi|56500140|emb|CAH93764.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
berghei]
Length = 77
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
PK F+ L G++VI +L G +YKGIL D MN L TEE DG K + IR
Sbjct: 6 PKYFVQSLKGRTVIVRLNNGADYKGILACLDERMNVTLEQTEEYFDGELIEKYNDAFIRG 65
Query: 69 NNILYIRGAEE 79
NN+ YIR ++
Sbjct: 66 NNVFYIRAIDD 76
>gi|50344808|ref|NP_001002077.1| U6 snRNA-associated Sm-like protein LSm6 [Danio rerio]
gi|48735113|gb|AAH72549.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|182888802|gb|AAI64231.1| Lsm6 protein [Danio rerio]
gi|221219176|gb|ACM08249.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221220666|gb|ACM08994.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221220672|gb|ACM08997.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221221694|gb|ACM09508.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|223646340|gb|ACN09928.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|223672187|gb|ACN12275.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|225716604|gb|ACO14148.1| U6 snRNA-associated Sm-like protein LSm6 [Esox lucius]
Length = 80
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDAFLRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|390981168|pdb|4EMK|B Chain B, Crystal Structure Of Splsm567
Length = 75
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FLN + GK V+ +L G +YKGIL DGY N L TEE ++G T G+ I
Sbjct: 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYXNLALERTEEYVNGKKTNVYGDAFI 62
Query: 67 RCNNILYIRGAEE 79
R NN+LY+ ++
Sbjct: 63 RGNNVLYVSALDD 75
>gi|15224366|ref|NP_181909.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|145331121|ref|NP_001078052.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|2281089|gb|AAB64025.1| putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana]
gi|30725284|gb|AAP37664.1| At2g43810 [Arabidopsis thaliana]
gi|110735708|dbj|BAE99834.1| putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana]
gi|222423635|dbj|BAH19786.1| AT2G43810 [Arabidopsis thaliana]
gi|330255235|gb|AEC10329.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|330255236|gb|AEC10330.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
Length = 91
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|15232179|ref|NP_191540.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|7019675|emb|CAB75800.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|27754440|gb|AAO22668.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
gi|28394039|gb|AAO42427.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
gi|332646450|gb|AEE79971.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
Length = 91
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G L DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|391332718|ref|XP_003740777.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Metaseiulus occidentalis]
Length = 79
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
FL L G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FLKQLVGRPVVVKLNSGLDYRGVLSCLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|326477395|gb|EGE01405.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton equinum
CBS 127.97]
Length = 80
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 40/73 (54%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
ST +P FL +TG V KL G YKG L S DGYMN L TEE ++G
Sbjct: 5 STSEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSY 64
Query: 62 GEVLIRCNNILYI 74
G+ +R NN+LYI
Sbjct: 65 GDAFVRGNNVLYI 77
>gi|296490659|tpg|DAA32772.1| TPA: Sm protein F-like [Bos taurus]
Length = 80
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL +TG+ V+ KL G +Y+G+L DGYMN L TEE ++G G+ I+
Sbjct: 8 PSDFLKQITGRPVVVKLNSGVDYRGVLACLDGYMNIVLEQTEEYVNGQLKNTYGDAFIQG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|294877652|ref|XP_002768059.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239870256|gb|EER00777.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFLN LTG+ V+ +LKW E KG L S D +MN +L EE G+ G LG+
Sbjct: 24 VPVNPQPFLNDLTGQEVLVRLKWATLELKGRLQSVDTFMNLRLDHCEEWQSGNFKGALGD 83
Query: 64 VLIR 67
VLIR
Sbjct: 84 VLIR 87
>gi|224000756|ref|XP_002290050.1| hypothetical protein THAPSDRAFT_262381 [Thalassiosira pseudonana
CCMP1335]
gi|220973472|gb|EED91802.1| hypothetical protein THAPSDRAFT_262381, partial [Thalassiosira
pseudonana CCMP1335]
Length = 75
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G+ V +L G +Y+G+L DGYMN + TEE +DG K G+ IR
Sbjct: 4 SPSDFLKAVLGRPVNVRLNTGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKSKYGDCFIR 63
Query: 68 CNNILYI 74
NN++YI
Sbjct: 64 GNNVMYI 70
>gi|449018669|dbj|BAM82071.1| Sm protein F [Cyanidioschyzon merolae strain 10D]
Length = 90
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
P L+ L G V +LKW EY G+L S D Y N +L EE+ + LG+++I
Sbjct: 10 VKPTNLLSALQGNRVSVRLKWDLEYTGLLASYDSYFNLELEHAEELQPDGSSLPLGDMII 69
Query: 67 RCNNILYIR 75
RCNN+LYIR
Sbjct: 70 RCNNVLYIR 78
>gi|296805353|ref|XP_002843501.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238844803|gb|EEQ34465.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 80
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL +TG V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|321461493|gb|EFX72525.1| hypothetical protein DAPPUDRAFT_59069 [Daphnia pulex]
Length = 79
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE +G K G+ IR
Sbjct: 7 PNEFLKQIIGRPVVVKLNNGVDYRGVLACLDGYMNIALEQTEEYSNGQLKNKYGDAFIRG 66
Query: 69 NNILYI 74
NN+L+I
Sbjct: 67 NNVLFI 72
>gi|353235226|emb|CCA67242.1| hypothetical protein PIIN_01075 [Piriformospora indica DSM 11827]
Length = 65
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 32/43 (74%)
Query: 25 LKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
LKWG EY+G LVSTD +MN QLA+TEE DG G LGEV IR
Sbjct: 12 LKWGLEYRGFLVSTDAFMNLQLANTEEYQDGKSNGALGEVFIR 54
>gi|162605820|ref|XP_001713425.1| small nuclear ribonucleoprotein F [Guillardia theta]
gi|13794357|gb|AAK39734.1|AF083031_91 small nuclear ribonucleoprotein F [Guillardia theta]
Length = 73
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 41/67 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPK LN K+V KLKWG Y GI + +D YMN L S E+I G LG VLIR
Sbjct: 2 NPKNILNNNYNKNVFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLIR 61
Query: 68 CNNILYI 74
CNNIL+I
Sbjct: 62 CNNILFI 68
>gi|315045632|ref|XP_003172191.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|327304531|ref|XP_003236957.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|311342577|gb|EFR01780.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|326459955|gb|EGD85408.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|326472909|gb|EGD96918.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton tonsurans
CBS 112818]
Length = 80
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL +TG V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|195029477|ref|XP_001987599.1| GH22008 [Drosophila grimshawi]
gi|195119462|ref|XP_002004250.1| GI19714 [Drosophila mojavensis]
gi|195401621|ref|XP_002059411.1| GJ17501 [Drosophila virilis]
gi|193903599|gb|EDW02466.1| GH22008 [Drosophila grimshawi]
gi|193909318|gb|EDW08185.1| GI19714 [Drosophila mojavensis]
gi|194142417|gb|EDW58823.1| GJ17501 [Drosophila virilis]
Length = 79
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+N + G+ V KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FINQIHGRPVAVKLNNGVDYRGVLACLDGYMNIALDQTEEYVNGQLKNKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|320582096|gb|EFW96314.1| Core Sm protein Sm F [Ogataea parapolymorpha DL-1]
Length = 87
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIID--GHCTGKLG 62
P NPKP+L L GK V+ KLK+ + EY G L+S D YMN L + ID + +LG
Sbjct: 5 PINPKPYLQSLVGKPVVIKLKFNNIEYHGKLLSIDNYMNLLLDKDVKEIDTAAETSTELG 64
Query: 63 -EVLIRCNNILYIRGAEEGDEEGE 85
E+ +RCNN+L++ G ++ +E+ E
Sbjct: 65 DELFVRCNNVLWV-GEKQDNEQAE 87
>gi|307184080|gb|EFN70615.1| U6 snRNA-associated Sm-like protein LSm6 [Camponotus floridanus]
Length = 79
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FIQQIHGRPVVVKLNSGVDYRGVLACIDGYMNIALEQTEEYVNGQLKDKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|148700925|gb|EDL32872.1| mCG50614 [Mus musculus]
Length = 104
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G Y+G+LV DGYMN L TEE ++G K + IR
Sbjct: 8 PNDFLKQIIGRPVVVKLNSGVGYRGVLVCLDGYMNIALEQTEEYVNGQLKNKYRDAFIRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|322698480|gb|EFY90250.1| U6 snRNA-associated protein LSm6 [Metarhizium acridum CQMa 102]
Length = 86
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL G YKG L S DGYMN L TEE I+G G+ +R
Sbjct: 16 DPSSFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGKKRRDYGDAFVR 75
Query: 68 CNNILYI 74
NN++YI
Sbjct: 76 GNNVMYI 82
>gi|357625163|gb|EHJ75691.1| putative membrane-associated protein [Danaus plexippus]
Length = 79
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN
Sbjct: 9 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNN 68
Query: 71 ILYI 74
+LYI
Sbjct: 69 VLYI 72
>gi|189028860|sp|Q4WNI0.2|LSM6_ASPFU RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L +EE +DG G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|71649985|ref|XP_813700.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma cruzi strain CL
Brener]
gi|71651762|ref|XP_814552.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma cruzi strain CL
Brener]
gi|70878609|gb|EAN91849.1| small nuclear ribonucleoprotein Sm-F, putative [Trypanosoma
cruzi]
gi|70879534|gb|EAN92701.1| small nuclear ribonucleoprotein Sm-F, putative [Trypanosoma
cruzi]
Length = 74
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL L G +V K KWG Y G LVS D YMN QL T E +LGE+L+RC
Sbjct: 6 PAAFLASLVGSTVHVKSKWGPVYVGTLVSCDPYMNLQLRDTVE--KAKEETELGEMLLRC 63
Query: 69 NNILYIR 75
NN+LYIR
Sbjct: 64 NNVLYIR 70
>gi|242021065|ref|XP_002430967.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212516187|gb|EEB18229.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 79
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|307195205|gb|EFN77189.1| U6 snRNA-associated Sm-like protein LSm6 [Harpegnathos saltator]
Length = 79
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|392574530|gb|EIW67666.1| hypothetical protein TREMEDRAFT_20231, partial [Tremella
mesenterica DSM 1558]
Length = 77
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
PL +P FL + GK V ++ G +Y G+L DGYMN L TEE ++GH G+
Sbjct: 1 PLAGSPSDFLKNIVGKRVKVRVGKGIDYHGLLTCLDGYMNVALEETEEWVNGHRVTTYGD 60
Query: 64 VLIRCNNILYIRGAEE 79
+R NN+LYI E+
Sbjct: 61 CFLRGNNVLYISAMED 76
>gi|440889992|gb|ELR44741.1| U6 snRNA-associated Sm-like protein LSm6 [Bos grunniens mutus]
Length = 80
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G G+ I+
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNTYGDAFIQG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|343426809|emb|CBQ70337.1| probable U6 snRNA-associated Sm-like protein LSm6 [Sporisorium
reilianum SRZ2]
Length = 80
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
+ P +P FL + GKSV +L G +Y+G+L DGYMN L T E +DG
Sbjct: 3 AAPKAGSPNDFLKGVIGKSVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGVQKNSY 62
Query: 62 GEVLIRCNNILYIRGAEE 79
G+ IR NN++YI E+
Sbjct: 63 GDAFIRGNNVMYITALEK 80
>gi|222424888|dbj|BAH20395.1| AT2G43810 [Arabidopsis thaliana]
Length = 91
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+GIL DGYMN + EE ++G G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQAEEYVNGQLKNTYGDAFVRG 74
Query: 69 NNILYI 74
NN+LYI
Sbjct: 75 NNVLYI 80
>gi|110749924|ref|XP_001121733.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Apis
mellifera]
gi|350419231|ref|XP_003492114.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Bombus
impatiens]
gi|380023576|ref|XP_003695594.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Apis
florea]
gi|383861934|ref|XP_003706439.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Megachile rotundata]
Length = 79
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|156550741|ref|XP_001606104.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Nasonia
vitripennis]
Length = 80
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|212543325|ref|XP_002151817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
gi|210066724|gb|EEA20817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
Length = 80
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG V KL G Y+G L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSTFLSEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEYVNGQLRRSYGDAFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|226372462|gb|ACO51856.1| U6 snRNA-associated Sm-like protein LSm6 [Rana catesbeiana]
Length = 80
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P F + G+ V+ +L G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFWKQIIGRPVVVELNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>gi|221058891|ref|XP_002260091.1| u6 snRNA-associated sm-like protein [Plasmodium knowlesi strain
H]
gi|193810164|emb|CAQ41358.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
knowlesi strain H]
Length = 77
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+PK F+ L G+ VI +L G ++KGIL D MN L TEE +G G + IR
Sbjct: 5 SPKDFVQSLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGEFVGSYYDAFIR 64
Query: 68 CNNILYIRGAEE 79
NN+ YIR ++
Sbjct: 65 GNNVFYIRAIDD 76
>gi|189028855|sp|A5DRQ6.2|LSM6_LODEL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL + G SV KL G EY+G L + DGYMN L + +E+ID T G+V +
Sbjct: 10 IDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDVFL 69
Query: 67 RCNNILYI 74
R NN+LYI
Sbjct: 70 RGNNVLYI 77
>gi|449329072|gb|AGE95347.1| small nuclear ribonucleoprotein f [Encephalitozoon cuniculi]
Length = 81
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P NPK FL + +SV LKWG Y+G LV++D Y N L E ++G + K+GE
Sbjct: 9 PAKENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTE-MEGEASVKIGE 67
Query: 64 VLIRCNNILYI 74
V IRCNNI I
Sbjct: 68 VSIRCNNIKRI 78
>gi|328697100|ref|XP_003240231.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Acyrthosiphon pisum]
gi|328697102|ref|XP_003240232.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Acyrthosiphon pisum]
Length = 80
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G++ DGYMN L TEE I+G K G+ IR NN+
Sbjct: 10 FIQQIHGRPVVVKLNSGVDYRGVMACIDGYMNIALEQTEEYINGELKNKFGDSFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|326427782|gb|EGD73352.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 77
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + + V+ KL G + G L + D +MN L TEE ++G T K G+ +R
Sbjct: 5 PSDFLKKIHRQKVVVKLNSGITFTGRLAALDAFMNVALEDTEEYVNGKQTAKYGDAFVRG 64
Query: 69 NNILYIRGAEE 79
NN+LYI AEE
Sbjct: 65 NNVLYISPAEE 75
>gi|189028850|sp|A1DM27.2|LSM6_NEOFI RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G Y+G L S DGYMN L +EE +DG G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|425770038|gb|EKV08513.1| hypothetical protein PDIP_68050 [Penicillium digitatum Pd1]
gi|425771729|gb|EKV10166.1| hypothetical protein PDIG_58570 [Penicillium digitatum PHI26]
Length = 80
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSVFLSEIIGAPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKLRRNYGDAFVR 70
Query: 68 CNNILYIRGA 77
NN+LYI +
Sbjct: 71 GNNVLYISSS 80
>gi|221220122|gb|ACM08722.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
Length = 80
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDAFLRG 67
Query: 69 NNILYI 74
N +LYI
Sbjct: 68 NTVLYI 73
>gi|225716748|gb|ACO14220.1| U6 snRNA-associated Sm-like protein LSm6 [Esox lucius]
Length = 80
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYM+ + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMSIAVEQTEEYVNGQLKNKYGDAFLRG 67
Query: 69 NNILYI 74
NN+LY+
Sbjct: 68 NNVLYV 73
>gi|242786335|ref|XP_002480785.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720932|gb|EED20351.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
Length = 80
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL +TG V KL G Y+G L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSTFLGEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEYVNGQLRRSYGDTFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|91082305|ref|XP_974175.1| PREDICTED: similar to AGAP005314-PA [Tribolium castaneum]
gi|270007198|gb|EFA03646.1| hypothetical protein TcasGA2_TC013740 [Tribolium castaneum]
Length = 79
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
F+ + + V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN
Sbjct: 9 SFIQQIHARPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKFGDAFIRGNN 68
Query: 71 ILYI 74
+LYI
Sbjct: 69 VLYI 72
>gi|259484712|tpe|CBF81168.1| TPA: U6 snRNA-associated Sm-like protein LSm6, putative
(AFU_orthologue; AFUA_6G06325) [Aspergillus nidulans
FGSC A4]
Length = 80
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L ++E + G T G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTRSYGDAFIR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|332023213|gb|EGI63469.1| U6 snRNA-associated Sm-like protein LSm6 [Acromyrmex echinatior]
Length = 608
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 539 FIQQIHGRPVVVKLNSGVDYRGVLACIDGYMNIALEQTEEYVNGQLKDKYGDAFIRGNNV 598
Query: 72 LYI 74
LYI
Sbjct: 599 LYI 601
>gi|156060469|ref|XP_001596157.1| hypothetical protein SS1G_02373 [Sclerotinia sclerotiorum 1980]
gi|154699781|gb|EDN99519.1| hypothetical protein SS1G_02373 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 223
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWG--HEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
+P NP+PFL L + VI +LKWG EYKG LVS D YMN QL+ EE ID T
Sbjct: 149 VPINPRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTN 205
>gi|291001797|ref|XP_002683465.1| predicted protein [Naegleria gruberi]
gi|284097094|gb|EFC50721.1| predicted protein [Naegleria gruberi]
Length = 72
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 8 NPKPFL-NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL N + GK VI KL G EY+G+L DGYMN L T+E +DG TG G+ I
Sbjct: 7 DPTTFLKNDIVGKPVIVKLNSGAEYRGVLTCLDGYMNVALEQTKEYVDGVQTGTYGDAFI 66
Query: 67 RCNN 70
R NN
Sbjct: 67 RGNN 70
>gi|225712226|gb|ACO11959.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
gi|225712252|gb|ACO11972.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
Length = 85
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
PK FL + G+ V+ KL G +Y+G+L DG+MN L TEE +G K G+ +R
Sbjct: 10 PKDFLKQILGRPVLVKLNSGSDYRGVLSCLDGHMNIALEQTEEYCEGQLKNKYGDCFLRG 69
Query: 69 NNILYI 74
NN+LYI
Sbjct: 70 NNVLYI 75
>gi|328854944|gb|EGG04073.1| hypothetical protein MELLADRAFT_72433 [Melampsora larici-populina
98AG31]
Length = 93
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G V+ +L G +Y+GIL DGYMN L +TEE ++G G+ +R
Sbjct: 24 PADFLKQVVGHEVVVRLNSGVDYRGILSCLDGYMNIALENTEEYVNGIKRNSYGDAFVRG 83
Query: 69 NNILYIRGAE 78
NN+LYI E
Sbjct: 84 NNVLYISRVE 93
>gi|325089253|gb|EGC42563.1| LSM domain-containing protein [Ajellomyces capsulatus H88]
Length = 95
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 70
Query: 68 CNNILYIRGAEEGDEEGEMR 87
NN++ DE E+R
Sbjct: 71 GNNVVVAADLFHADEGCEVR 90
>gi|149898865|gb|ABR27921.1| small ribonuclear protein [Triatoma infestans]
Length = 80
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ +R NN+
Sbjct: 10 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKEKYGDAFLRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|429964806|gb|ELA46804.1| hypothetical protein VCUG_01704 [Vavraia culicis 'floridensis']
Length = 81
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M NPK FL GK + LKW +Y+GIL D N +++S E +D GK
Sbjct: 1 MQETTKENPKQFLKARIGKRIRISLKWNVDYEGILDGFDDNFNIEVSSVSEFVDSKMVGK 60
Query: 61 LGEVLIRCNNI 71
L ++IRCNNI
Sbjct: 61 LKRMVIRCNNI 71
>gi|189028859|sp|A1CE19.2|LSM6_ASPCL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 78
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L ++E +DG G+ IR
Sbjct: 10 DPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIR 69
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 70 GNNVLYI 76
>gi|452980522|gb|EME80283.1| hypothetical protein MYCFIDRAFT_189882 [Pseudocercospora
fijiensis CIRAD86]
Length = 90
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L ++E +DG G+ IR
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDSKEFVDGKLRRNYGDAFIR 77
Query: 68 CNNILYI 74
NN++YI
Sbjct: 78 GNNVMYI 84
>gi|19074156|ref|NP_584762.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi
GB-M1]
gi|19068798|emb|CAD25266.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi
GB-M1]
Length = 81
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P NPK FL + +SV LKWG Y+G LV++D Y N L E +G + K+GE
Sbjct: 9 PARENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTE-REGEASVKIGE 67
Query: 64 VLIRCNNILYI 74
V IRCNNI I
Sbjct: 68 VSIRCNNIKRI 78
>gi|401884862|gb|EJT49000.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 2479]
gi|406694421|gb|EKC97748.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 8904]
Length = 91
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P +P FL + GK V ++ G +Y G+L DGYMN L TEE G K G+
Sbjct: 15 PAAGSPSDFLKNIVGKKVKVRIGSGIDYHGLLTCLDGYMNVALEETEEWAQGRLIAKYGD 74
Query: 64 VLIRCNNILYIRGAEE 79
+R NN+LYI E+
Sbjct: 75 TFLRGNNVLYISALED 90
>gi|24656550|ref|NP_611528.1| CG9344 [Drosophila melanogaster]
gi|125810771|ref|XP_001361619.1| GA21716 [Drosophila pseudoobscura pseudoobscura]
gi|194753682|ref|XP_001959139.1| GF12211 [Drosophila ananassae]
gi|194881738|ref|XP_001974978.1| GG22072 [Drosophila erecta]
gi|195154152|ref|XP_002017986.1| GL17007 [Drosophila persimilis]
gi|195346251|ref|XP_002039679.1| GM15790 [Drosophila sechellia]
gi|195456011|ref|XP_002074964.1| GK23338 [Drosophila willistoni]
gi|195486699|ref|XP_002091616.1| GE12153 [Drosophila yakuba]
gi|195585248|ref|XP_002082401.1| GD11551 [Drosophila simulans]
gi|7291213|gb|AAF46645.1| CG9344 [Drosophila melanogaster]
gi|21064499|gb|AAM29479.1| RE43665p [Drosophila melanogaster]
gi|38048229|gb|AAR10017.1| similar to Drosophila melanogaster CG9344, partial [Drosophila
yakuba]
gi|54636795|gb|EAL26198.1| GA21716 [Drosophila pseudoobscura pseudoobscura]
gi|190620437|gb|EDV35961.1| GF12211 [Drosophila ananassae]
gi|190658165|gb|EDV55378.1| GG22072 [Drosophila erecta]
gi|194113782|gb|EDW35825.1| GL17007 [Drosophila persimilis]
gi|194135028|gb|EDW56544.1| GM15790 [Drosophila sechellia]
gi|194171049|gb|EDW85950.1| GK23338 [Drosophila willistoni]
gi|194177717|gb|EDW91328.1| GE12153 [Drosophila yakuba]
gi|194194410|gb|EDX07986.1| GD11551 [Drosophila simulans]
gi|220950784|gb|ACL87935.1| CG9344-PA [synthetic construct]
gi|220959486|gb|ACL92286.1| CG9344-PA [synthetic construct]
Length = 79
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+N + G+ V KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGDAFIRGNNV 69
Query: 72 LYI 74
LYI
Sbjct: 70 LYI 72
>gi|241957822|ref|XP_002421630.1| U6 snRNA-associated Sm-like protein Lsm6, putative [Candida
dubliniensis CD36]
gi|223644975|emb|CAX39567.1| U6 snRNA-associated Sm-like protein Lsm6, putative [Candida
dubliniensis CD36]
Length = 80
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL+ + G SV KL G EYKG L + DG+MN L E ++G T + G+V I
Sbjct: 10 TDPSKFLSGIIGSSVSVKLHNGVEYKGNLQTIDGFMNVVLDEGIETVNGKVTKEYGDVFI 69
Query: 67 RCNNILYIRGA 77
R NN+LYI A
Sbjct: 70 RGNNVLYISEA 80
>gi|389583811|dbj|GAB66545.1| small nuclear ribonucleoprotein F [Plasmodium cynomolgi strain B]
Length = 57
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 30 EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
EYKG L S D YMN +LA+ EE I G G LGE+ +RCNNILYIR +E
Sbjct: 2 EYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIFLRCNNILYIREDKE 51
>gi|146101999|ref|XP_001469255.1| putative sm-f snRNP core complex protein [Leishmania infantum
JPCM5]
gi|398023737|ref|XP_003865030.1| sm-f snRNP core complex protein, putative [Leishmania donovani]
gi|134073624|emb|CAM72358.1| putative sm-f snRNP core complex protein [Leishmania infantum
JPCM5]
gi|322503266|emb|CBZ38351.1| sm-f snRNP core complex protein, putative [Leishmania donovani]
Length = 76
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL+ L GK+V+ K KWG Y+G LVS D +MN QL + E +LGE+L+R
Sbjct: 6 PGAFLHSLIGKNVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVE--HAKQDTELGEMLLRN 63
Query: 69 NNILYIR 75
NNILYIR
Sbjct: 64 NNILYIR 70
>gi|392572202|gb|EIW65374.1| LSM-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 98
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+GIL DGYMN L TEE ++G T K G+ IR
Sbjct: 26 SPTDFLKGVVGKRVVVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGRVTNKYGDAFIR 85
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 86 GNNVLYISAAE 96
>gi|389595241|ref|XP_003722843.1| putative sm-f snRNP core complex protein [Leishmania major strain
Friedlin]
gi|323364071|emb|CBZ13077.1| putative sm-f snRNP core complex protein [Leishmania major strain
Friedlin]
Length = 76
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL+ L GK+V+ K KWG Y+G LVS D +MN QL + E +LGE+L+R
Sbjct: 6 PGAFLHSLIGKNVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVE--HAKQDTELGEMLLRN 63
Query: 69 NNILYIR 75
NNILYIR
Sbjct: 64 NNILYIR 70
>gi|401429920|ref|XP_003879442.1| putative sm-f snRNP core complex protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495692|emb|CBZ30998.1| putative sm-f snRNP core complex protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 76
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL+ L GK V+ K KWG Y+G LVS D +MN QL + E +LGE+L+R
Sbjct: 6 PGAFLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVE--HAKQDTELGEMLLRN 63
Query: 69 NNILYIR 75
NNILYIR
Sbjct: 64 NNILYIR 70
>gi|154345205|ref|XP_001568544.1| putative sm-f snRNP core complex protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065881|emb|CAM43661.1| putative sm-f snRNP core complex protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 77
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL+ L GK V+ K KWG Y+G LVS D +MN QL E +LGE+L+R
Sbjct: 6 PGAFLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRDAVE--HAKQDTELGEMLLRN 63
Query: 69 NNILYIRGA 77
NNILYIR A
Sbjct: 64 NNILYIREA 72
>gi|346978373|gb|EGY21825.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 84
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G +V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 15 DPSSFLSDIIGNAVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGTKRRSYGDAFVR 74
Query: 68 CNNILYI 74
NN++YI
Sbjct: 75 GNNVMYI 81
>gi|388851483|emb|CCF54885.1| probable U6 snRNA-associated Sm-like protein LSm6 [Ustilago
hordei]
Length = 85
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P +P FL + GK+V +L G +Y+G+L DGYMN L T E +DG G+
Sbjct: 10 PKTGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGVQKNSYGD 69
Query: 64 VLIRCNNILYIRGAEE 79
IR NN++YI E+
Sbjct: 70 AFIRGNNVMYITALEK 85
>gi|346322201|gb|EGX91800.1| U6 snRNA-associated Sm-like protein LSm6, putative [Cordyceps
militaris CM01]
Length = 81
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL G YKG L S DGYMN L T+E ++G + G+ +R
Sbjct: 11 DPSSFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQEFVNGVKRKEYGDAFVR 70
Query: 68 CNNILYI 74
NN++YI
Sbjct: 71 GNNVMYI 77
>gi|170577453|ref|XP_001894009.1| U6 snRNA-associated Sm-like protein LSm6 [Brugia malayi]
gi|158599611|gb|EDP37154.1| U6 snRNA-associated Sm-like protein LSm6, putative [Brugia
malayi]
Length = 77
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DG+MN L TEE +G K G+ IR
Sbjct: 6 NPSEFLKQIIGKPVVVKLNSGIDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFIR 65
Query: 68 CNNILYI 74
NN L++
Sbjct: 66 GNNGLFL 72
>gi|358391711|gb|EHK41115.1| hypothetical protein TRIATDRAFT_206714 [Trichoderma atroviride
IMI 206040]
Length = 83
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G SV+ KL G YKG L S DGYMN L T E ++G + G+ +R
Sbjct: 13 DPSSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTVEYVNGAKRREYGDTFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|358379099|gb|EHK16780.1| hypothetical protein TRIVIDRAFT_184162 [Trichoderma virens
Gv29-8]
Length = 83
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G SV+ KL G YKG L S DGYMN L T E ++G + G+ +R
Sbjct: 13 DPSSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGVKRREYGDTFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|300707099|ref|XP_002995772.1| hypothetical protein NCER_101246 [Nosema ceranae BRL01]
gi|239604984|gb|EEQ82101.1| hypothetical protein NCER_101246 [Nosema ceranae BRL01]
Length = 79
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T NPK FLN L K + LKWG Y+G+L+ D Y N L+ +E D +
Sbjct: 1 MNTVQTENPKQFLNRLINKKIRIFLKWGQYYEGVLIEFDKYFNFVLSECKE-YDNEFINE 59
Query: 61 LGEVLIRCNNI 71
+G + IRCNN+
Sbjct: 60 MGSIFIRCNNV 70
>gi|312077539|ref|XP_003141348.1| hypothetical protein LOAG_05763 [Loa loa]
Length = 71
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DG+MN L TEE +G K G+ IR
Sbjct: 6 NPSEFLKQIIGKPVVVKLNSGVDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFIR 65
Query: 68 CNNILY 73
NN L+
Sbjct: 66 GNNGLF 71
>gi|303388982|ref|XP_003072724.1| small nuclear ribonucleoprotein F [Encephalitozoon intestinalis
ATCC 50506]
gi|303301866|gb|ADM11364.1| small nuclear ribonucleoprotein F [Encephalitozoon intestinalis
ATCC 50506]
Length = 81
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P NPK FL+ + K+V LKWG Y+G+LV++D Y N L E DG +GE
Sbjct: 9 PSRENPKQFLHRIRDKNVSVTLKWGQVYEGVLVTSDNYFNILLDKCIE-KDGESEAMVGE 67
Query: 64 VLIRCNNILYI 74
V IRCNNI I
Sbjct: 68 VTIRCNNIKSI 78
>gi|400603112|gb|EJP70710.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 81
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G VI KL G YKG L S DGYMN L T+E ++G + G+ +R
Sbjct: 11 DPSSFLGDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQEFVNGVKRREYGDAFVR 70
Query: 68 CNNILYI 74
NN++YI
Sbjct: 71 GNNVMYI 77
>gi|240273226|gb|EER36748.1| LSM domain-containing protein [Ajellomyces capsulatus H143]
Length = 95
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 70
Query: 68 CNNILYIRGAEEGDE 82
NN++ DE
Sbjct: 71 GNNVVVAADLFHADE 85
>gi|209879862|ref|XP_002141371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556977|gb|EEA07022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 85
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK VI +L G +YKGIL D MN + T+E ++G + G+ IR
Sbjct: 11 NPSDFLRQVIGKPVIVRLNSGIDYKGILACLDDRMNIAMEDTKEFVNGSLVEQHGDTFIR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|453082226|gb|EMF10274.1| LSM domain-containing protein [Mycosphaerella populorum SO2202]
Length = 93
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L T+E ++G G+ +R
Sbjct: 21 DPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEFVEGKMRRNYGDAFVR 80
Query: 68 CNNILYI 74
NN++YI
Sbjct: 81 GNNVMYI 87
>gi|344304341|gb|EGW34590.1| U6 snRNA-associated Sm-like protein LSm6 [Spathaspora
passalidarum NRRL Y-27907]
Length = 77
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS +P FL+ + G SVI KL+ G Y G L + DGYMN L + +E +G
Sbjct: 1 MSEFEKTDPSKFLSDIIGSSVIVKLQNGINYTGNLQTIDGYMNVVLDNAKECSNGKVVRD 60
Query: 61 LGEVLIRCNNILYIRGA 77
G+V IR NN+LYI A
Sbjct: 61 YGDVFIRGNNVLYISEA 77
>gi|367043476|ref|XP_003652118.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
gi|346999380|gb|AEO65782.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
Length = 82
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 13 DPSGFLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGVKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|302836979|ref|XP_002950049.1| hypothetical protein VOLCADRAFT_60073 [Volvox carteri f.
nagariensis]
gi|300264522|gb|EFJ48717.1| hypothetical protein VOLCADRAFT_60073 [Volvox carteri f.
nagariensis]
Length = 73
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 3 PAEFLKAIKGKPVLVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 62
Query: 69 NN 70
NN
Sbjct: 63 NN 64
>gi|189028856|sp|Q6BR90.2|LSM6_DEBHA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL+ + G SV +L G EY G L S DGYMN L T+E + G G+V IR
Sbjct: 17 PSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRG 76
Query: 69 NNILYIRGA 77
NN+LYI A
Sbjct: 77 NNVLYISEA 85
>gi|403157835|ref|XP_003307220.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163571|gb|EFP74214.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 96
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
ST P FL + G V +L G +Y+GIL DGYMN L +TEE ++G
Sbjct: 20 STGTGGTPSDFLKQVVGHQVTVRLNSGVDYRGILSCLDGYMNIALENTEEYVNGIKRNSY 79
Query: 62 GEVLIRCNNILYIRGAE 78
G+ +R NN+LYI E
Sbjct: 80 GDAFLRGNNVLYISRVE 96
>gi|281354086|gb|EFB29670.1| hypothetical protein PANDA_004348 [Ailuropoda melanoleuca]
Length = 78
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NN 70
NN
Sbjct: 68 NN 69
>gi|313214484|emb|CBY40846.1| unnamed protein product [Oikopleura dioica]
Length = 74
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 30 EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
EYKG L++ DGYMN QL ++EE IDG G LGE+LIRCNN
Sbjct: 2 EYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRCNN 42
>gi|444729643|gb|ELW70053.1| U6 snRNA-associated Sm-like protein LSm6 [Tupaia chinensis]
Length = 82
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NN 70
NN
Sbjct: 68 NN 69
>gi|310793377|gb|EFQ28838.1| LSM domain-containing protein [Glomerella graminicola M1.001]
gi|380486548|emb|CCF38632.1| U6 snRNA-associated Sm-like protein LSm6 [Colletotrichum
higginsianum]
Length = 83
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 13 DPSSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|344229144|gb|EGV61030.1| U6 snRNA-associated Sm-like protein LSm6 [Candida tenuis ATCC
10573]
gi|344229145|gb|EGV61031.1| hypothetical protein CANTEDRAFT_116192 [Candida tenuis ATCC
10573]
Length = 83
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG-KL 61
+ + +P FL+ + G V KL G Y G L S DG+MN + +T E I G +G K
Sbjct: 8 SSIKTDPSTFLSGIIGSKVSVKLNNGVSYVGNLQSIDGFMNIVMDTTAEFIGGAASGTKY 67
Query: 62 GEVLIRCNNILYIR 75
G+V IR NN+LYI
Sbjct: 68 GDVFIRGNNVLYIS 81
>gi|294884790|gb|ADF47410.1| Sm-like-6 protein [Dugesia japonica]
Length = 76
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 8 NPKPFLNLLTGKSVICKL-KWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
NP FL ++ K V+ KL + G +Y+G+LVS DGYMN L TEE ++G K + I
Sbjct: 6 NPSDFLKAISDKPVLVKLNRPGADYRGVLVSLDGYMNLMLEQTEEYVNGQLKNKYNDTFI 65
Query: 67 RCNN 70
R NN
Sbjct: 66 RGNN 69
>gi|320585945|gb|EFW98624.1| lsm domain containing protein [Grosmannia clavigera kw1407]
Length = 84
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL+ + G V+ KL G YKG L S DGYMN L T E ++G G+ +
Sbjct: 13 TDPSAFLSEIIGSPVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGVKRRTYGDAFV 72
Query: 67 RCNNILYIRGAE 78
R NN++YI E
Sbjct: 73 RGNNVMYISADE 84
>gi|189028851|sp|A7UXE4.2|LSM6_NEUCR RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|350296721|gb|EGZ77698.1| U6 snRNA-associated Sm-like protein LSm6 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE I+G G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|156099234|ref|XP_001615619.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium vivax Sal-1]
gi|148804493|gb|EDL45892.1| U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium
vivax]
Length = 77
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+PK F+ L G+ VI +L G ++KGIL D MN L TEE +G + IR
Sbjct: 5 SPKDFVESLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGELVESYYDAFIR 64
Query: 68 CNNILYIRGAEE 79
NN+ YIR ++
Sbjct: 65 GNNVFYIRAIDD 76
>gi|317145212|ref|XP_003189687.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus oryzae
RIB40]
Length = 80
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L +EE ++G G+ +R
Sbjct: 11 DPSVFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEYVNGKLRRSYGDAFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|395326114|gb|EJF58527.1| like-Sm ribonucleo protein, partial [Dichomitus squalens LYAD-421
SS1]
Length = 75
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+GIL DGYMN L TEE ++G T + G+ IR
Sbjct: 3 SPTDFLKGVVGKRVVVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGRVTNRYGDAFIR 62
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 63 GNNVLYISAAE 73
>gi|388581808|gb|EIM22115.1| U6 snRNA-associated Sm-like protein LSm6 [Wallemia sebi CBS
633.66]
Length = 87
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEE---IIDGHCTGKLGEV 64
+P FL + GKSV+ KL G Y GIL DGYMN + E I T GE
Sbjct: 12 SPSAFLKAIVGKSVVVKLNSGLLYTGILQCLDGYMNLVITDVRESSGIAGSPITSTYGEA 71
Query: 65 LIRCNNILYIRGAE 78
IR NN+LYI AE
Sbjct: 72 FIRGNNVLYISAAE 85
>gi|189028863|sp|Q2HAN0.2|LSM6_CHAGB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 82
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|189028854|sp|Q4PG71.2|LSM6_USTMA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK+V +L G +Y+G+L DGYMN L T E +DG G+ IR
Sbjct: 15 PNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGDAFIRG 74
Query: 69 NNILYIRGAEE 79
NN++YI E+
Sbjct: 75 NNVMYITALEK 85
>gi|336464624|gb|EGO52864.1| hypothetical protein NEUTE1DRAFT_96889 [Neurospora tetrasperma
FGSC 2508]
Length = 82
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L TEE I+G G+ +R
Sbjct: 13 DPSGFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|432114062|gb|ELK36109.1| U6 snRNA-associated Sm-like protein LSm6 [Myotis davidii]
Length = 84
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NN 70
NN
Sbjct: 68 NN 69
>gi|452837704|gb|EME39646.1| hypothetical protein DOTSEDRAFT_66594 [Dothistroma septosporum
NZE10]
Length = 91
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L T+E ++G G+ +R
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEYVEGKLRRNYGDAFVR 77
Query: 68 CNNILYI 74
NN++YI
Sbjct: 78 GNNVMYI 84
>gi|380090691|emb|CCC04861.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 82
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE I+G G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYINGVKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|348677781|gb|EGZ17598.1| hypothetical protein PHYSODRAFT_499052 [Phytophthora sojae]
Length = 84
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V KL G EYKG+L DG+MN + T+E +G + G+ IR
Sbjct: 15 PSDFLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYSNGQLKAQYGDCFIRG 74
Query: 69 NNILYIRGAE 78
NN+LYI ++
Sbjct: 75 NNVLYISASK 84
>gi|334331104|ref|XP_001376922.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Monodelphis domestica]
Length = 97
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NN 70
NN
Sbjct: 68 NN 69
>gi|149058700|gb|EDM09857.1| rCG63582, isoform CRA_a [Rattus norvegicus]
Length = 81
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NN 70
NN
Sbjct: 68 NN 69
>gi|301101082|ref|XP_002899630.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
gi|262103938|gb|EEY61990.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
Length = 83
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
T P FL + G+ V KL G EYKG+L DG+MN + T+E +G +
Sbjct: 7 QTSTKKTPSDFLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYQNGQLKAQY 66
Query: 62 GEVLIRCNNILYIRGAE 78
G+ IR NN+LYI ++
Sbjct: 67 GDCFIRGNNVLYISASK 83
>gi|389750730|gb|EIM91803.1| LSM-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 102
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+G+L DGYMN L TEE ++G T + G+ IR
Sbjct: 30 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGAVTNRYGDAFIR 89
Query: 68 CNNILYIRGAEE 79
NN+LYI EE
Sbjct: 90 GNNVLYISADEE 101
>gi|126644023|ref|XP_001388172.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117249|gb|EAZ51349.1| hypothetical protein cgd1_2690 [Cryptosporidium parvum Iowa II]
Length = 67
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 33/52 (63%)
Query: 31 YKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 82
YKG LVS D YMN L EE ID G LG+V IRCNN+LYI AEE E
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYISRAEESKE 54
>gi|67624211|ref|XP_668388.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659578|gb|EAL38148.1| hypothetical protein Chro.10304 [Cryptosporidium hominis]
Length = 67
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 33/52 (63%)
Query: 31 YKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 82
YKG LVS D YMN L EE ID G LG+V IRCNN+LYI AEE E
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYISRAEESKE 54
>gi|449018375|dbj|BAM81777.1| U6 snRNA-associated Sm-like protein LSm6 [Cyanidioschyzon merolae
strain 10D]
Length = 99
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
P P FL + G+ V+ KL G EY+G LV DGY+N L ++ E ++G + G
Sbjct: 23 APATRTPTHFLRKVLGRPVVVKLNNGTEYRGTLVCLDGYLNIVLENSAEFLNGELKRRYG 82
Query: 63 EVLIRCNNILYI 74
+ L+R +N+LY+
Sbjct: 83 DTLLRGSNVLYV 94
>gi|367020370|ref|XP_003659470.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
gi|347006737|gb|AEO54225.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
Length = 83
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 14 DPSSFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGTKRRTYGDTFVR 73
Query: 68 CNNILYI 74
NN++YI
Sbjct: 74 GNNVMYI 80
>gi|429859545|gb|ELA34324.1| u6 snrna-associated sm-like protein lsm6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 83
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 13 DPSSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGVKRRAYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|225680789|gb|EEH19073.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226292484|gb|EEH47904.1| LSM domain-containing protein [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 35/63 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 10 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 69
Query: 68 CNN 70
NN
Sbjct: 70 GNN 72
>gi|413918137|gb|AFW58069.1| hypothetical protein ZEAMMB73_640240 [Zea mays]
Length = 177
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+GIL DGYMN + TEE ++G K G+ IR
Sbjct: 19 PSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 78
Query: 69 NN 70
NN
Sbjct: 79 NN 80
>gi|393242672|gb|EJD50189.1| like-Sm ribonucleo protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 63
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +YKG+L DGYMN L T E ++G+ T K G+ IR
Sbjct: 1 SPTDFLKAVVGKRVVVRLVSGVDYKGVLSCLDGYMNIALEQTVEHVNGNVTNKYGDAFIR 60
Query: 68 CNN 70
NN
Sbjct: 61 GNN 63
>gi|340056303|emb|CCC50633.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma vivax Y486]
Length = 75
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL L G +V K KWG Y G LVS D +MN QL T E +LGE+L+R
Sbjct: 6 PAAFLASLVGNTVHVKSKWGPVYVGTLVSCDSHMNLQLRDTVE--KAKQETELGEMLLRN 63
Query: 69 NNILYIR 75
NN+LYIR
Sbjct: 64 NNVLYIR 70
>gi|396081223|gb|AFN82841.1| small nuclear ribonucleoprotein F [Encephalitozoon romaleae
SJ-2008]
Length = 81
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P NPK FL + ++V LKWG Y+G+LV++D Y N L E +G + K+GE
Sbjct: 9 PPKENPKQFLQRMKNRNVSVCLKWGQVYEGVLVTSDNYFNVLLDECVE-KEGETSTKVGE 67
Query: 64 VLIRCNNILYI 74
V IRCNNI I
Sbjct: 68 VSIRCNNIKSI 78
>gi|295672880|ref|XP_002796986.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282358|gb|EEH37924.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL +TG V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 10 DPSAFLTEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 69
Query: 68 CNN 70
NN
Sbjct: 70 GNN 72
>gi|408398664|gb|EKJ77793.1| hypothetical protein FPSE_02027 [Fusarium pseudograminearum
CS3096]
Length = 82
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L T E ++G + G+ +R
Sbjct: 13 DPSSFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTSEYVNGQKRREYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|407921547|gb|EKG14689.1| hypothetical protein MPH_08162 [Macrophomina phaseolina MS6]
Length = 80
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L T+E ++G G+ +R
Sbjct: 10 DPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQTKEYVEGKLRRNYGDAFVR 69
Query: 68 CNNILYI 74
NN++YI
Sbjct: 70 GNNVMYI 76
>gi|358056533|dbj|GAA97502.1| hypothetical protein E5Q_04180 [Mixia osmundae IAM 14324]
Length = 86
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL G+ V +L G +Y+GIL D Y+N + TEE+++G + G+ IR
Sbjct: 14 SPSDFLKNTVGQLVSVRLNSGVDYRGILSCLDAYLNIAMEQTEEVVNGQVRNRYGDSFIR 73
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 74 GNNVLYI 80
>gi|409050774|gb|EKM60250.1| hypothetical protein PHACADRAFT_75901, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 71
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+G+L DGYMN L TEE ++G T + G+ IR
Sbjct: 1 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIR 60
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 61 GNNVLYISAAE 71
>gi|448508183|ref|XP_003865891.1| Lsm6 Lsm protein [Candida orthopsilosis Co 90-125]
gi|380350229|emb|CCG20449.1| Lsm6 Lsm protein [Candida orthopsilosis Co 90-125]
Length = 79
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL L G V KL G EY+G L + DGYMN L + +E I+G T G++ +
Sbjct: 9 TDPSKFLGDLIGSPVRVKLYSGVEYRGDLQTIDGYMNVVLENGKEFINGDVTRDYGDLFL 68
Query: 67 RCNNILYI 74
R N +LYI
Sbjct: 69 RGNTVLYI 76
>gi|189194007|ref|XP_001933342.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330928710|ref|XP_003302375.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
gi|187978906|gb|EDU45532.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311322339|gb|EFQ89540.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
Length = 89
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L +E+ DG T G+ +R
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVADGRVTRNWGDAFVR 77
Query: 68 CNNILYI 74
NN+ YI
Sbjct: 78 GNNVTYI 84
>gi|320581302|gb|EFW95523.1| hypothetical protein HPODL_2857 [Ogataea parapolymorpha DL-1]
Length = 72
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
FL +T V+ KL+ G EY G+L S DGYMN L T E+++ + EV +R NN+
Sbjct: 7 FLAEMTNSPVVVKLQHGLEYHGVLASIDGYMNVVLKDTVEMVENNKVRNYEEVFLRGNNV 66
Query: 72 LYI 74
LYI
Sbjct: 67 LYI 69
>gi|385303687|gb|EIF47745.1| small nuclear ribonucleoprotein [Dekkera bruxellensis AWRI1499]
Length = 135
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLG 62
P NPKPFL L K VI KLK+ EY G L+S D YMN + + ++G LG
Sbjct: 5 PINPKPFLQSLLNKQVIVKLKFNSIEYHGKLLSIDNYMNLLMDKDVKEVNGKTREVSPLG 64
Query: 63 -EVLIRCNNILYI 74
E+ IRCNN+L+I
Sbjct: 65 DEMFIRCNNVLWI 77
>gi|219111981|ref|XP_002177742.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410627|gb|EEC50556.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 66
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G+ V KL G EY+GIL DGY+N + TEE +DG K G+ IR
Sbjct: 4 SPSDFLKSVLGRPVQVKLNSGIEYRGILACLDGYLNIAMEQTEEYVDGQLQAKYGDCFIR 63
Query: 68 CNN 70
NN
Sbjct: 64 GNN 66
>gi|261201258|ref|XP_002627029.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis SLH14081]
gi|239592088|gb|EEQ74669.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis SLH14081]
gi|239611748|gb|EEQ88735.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis ER-3]
gi|327348237|gb|EGE77094.1| LSM domain-containing protein [Ajellomyces dermatitidis ATCC
18188]
Length = 87
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL +TG V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 11 DPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 70
Query: 68 CNN 70
NN
Sbjct: 71 GNN 73
>gi|451848599|gb|EMD61904.1| hypothetical protein COCSADRAFT_173298 [Cochliobolus sativus
ND90Pr]
Length = 89
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
+ P +P FL+ + G V KL G YKG L S DGYMN L +E+ DG T
Sbjct: 12 AAPDSRDPSGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVSDGKVTRNW 71
Query: 62 GEVLIRCNNILYI 74
G+ +R NN+ YI
Sbjct: 72 GDAFVRGNNVTYI 84
>gi|443926573|gb|ELU45190.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 143
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+G+L DGYMN + TEE ++G T + G+ IR
Sbjct: 55 SPTDFLKNVVGKRVVVRLTSGVDYQGVLSCLDGYMNIAMEQTEEHVNGRVTNRYGDTFIR 114
Query: 68 CNN 70
NN
Sbjct: 115 GNN 117
>gi|449550266|gb|EMD41230.1| hypothetical protein CERSUDRAFT_109849 [Ceriporiopsis
subvermispora B]
Length = 100
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+G+L DGYMN L TEE ++G T + G+ IR
Sbjct: 28 SPTDFLKGVVGKRVVVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGLVTNRYGDAFIR 87
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 88 GNNVLYISAAE 98
>gi|406605529|emb|CCH43042.1| hypothetical protein BN7_2589 [Wickerhamomyces ciferrii]
Length = 112
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
F++ ++G VI KL G EY G L S DGYMN L T+E++ T K G+V IR NN
Sbjct: 17 FISNISGAKVIVKLYSGEEYHGTLDSIDGYMNITLEETQEVVSDKVTRKYGDVFIRGNN 75
>gi|452823026|gb|EME30040.1| U6 snRNA-associated Sm-like protein LSm6 isoform 2 [Galdieria
sulphuraria]
Length = 75
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ KL G EYKG+L DGYMN + TEE + K G+ IR
Sbjct: 11 SPADFLKQVVGKPVVVKLNSGVEYKGVLACLDGYMNIAMEQTEEHVGTQLKNKYGDTFIR 70
Query: 68 CNN 70
NN
Sbjct: 71 GNN 73
>gi|71745372|ref|XP_827316.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei TREU927]
gi|9837170|gb|AAG00459.1|AF280391_1 Sm-F [Trypanosoma brucei]
gi|70831481|gb|EAN76986.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261331524|emb|CBH14518.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei
gambiense DAL972]
Length = 75
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL L G +V K KWG Y G LVS D YMN QL E +LG++L+R
Sbjct: 6 PAAFLASLVGNTVHVKSKWGPVYVGTLVSCDPYMNLQLRDAVE--KAKQETELGDMLLRN 63
Query: 69 NNILYIR 75
NN+LYIR
Sbjct: 64 NNVLYIR 70
>gi|451998409|gb|EMD90873.1| hypothetical protein COCHEDRAFT_1194612 [Cochliobolus
heterostrophus C5]
Length = 89
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L +E+ DG T G+ +R
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVSDGKVTRNWGDAFVR 77
Query: 68 CNNILYI 74
NN+ YI
Sbjct: 78 GNNVTYI 84
>gi|66362830|ref|XP_628381.1| small nuclear ribonucleo protein [Cryptosporidium parvum Iowa II]
gi|46229796|gb|EAK90614.1| small nuclear ribonucleo protein [Cryptosporidium parvum Iowa II]
Length = 93
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G VI +L G +YKG+L D MN + TEE +DG G+ IR
Sbjct: 22 SPSDFLRQVIGSPVIVRLNSGVDYKGLLACLDDRMNIAMEDTEEYVDGVFVENHGDTFIR 81
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 82 GNNVLYI 88
>gi|240977906|ref|XP_002402835.1| small nuclear ribonucleoprotein f, putative [Ixodes scapularis]
gi|215491231|gb|EEC00872.1| small nuclear ribonucleoprotein f, putative [Ixodes scapularis]
Length = 116
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+LYI
Sbjct: 56 VVVKLNSGLDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 109
>gi|67624411|ref|XP_668488.1| Sm protein F [Cryptosporidium hominis TU502]
gi|54659686|gb|EAL38252.1| Sm protein F [Cryptosporidium hominis]
Length = 84
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G VI +L G +YKG+L D MN + TEE +DG G+ IR
Sbjct: 13 SPSDFLRQVIGSPVIVRLNSGVDYKGLLACLDDRMNIAMEDTEEYVDGVFVENHGDTFIR 72
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 73 GNNVLYI 79
>gi|170582188|ref|XP_001896017.1| hypothetical protein Bm1_22805 [Brugia malayi]
gi|158596863|gb|EDP35133.1| hypothetical protein Bm1_22805 [Brugia malayi]
Length = 44
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 42 MNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 82
MN QLA+ EE IDG TG +GEVLIRCNN+L++ GAEE E
Sbjct: 1 MNLQLANAEEYIDGRHTGDVGEVLIRCNNVLWVGGAEESSE 41
>gi|356573341|ref|XP_003554820.1| PREDICTED: uncharacterized protein LOC100777432 [Glycine max]
Length = 154
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 34/52 (65%)
Query: 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
L GK VI KLKWG EYKG VS D +MN QLA+ EE +G L E+LIR
Sbjct: 8 LIGKPVIVKLKWGMEYKGYPVSIDSFMNLQLANIEEYNEGQFIVNLEEILIR 59
>gi|440492813|gb|ELQ75351.1| Small nuclear ribonucleoprotein (snRNP) SMF [Trachipleistophora
hominis]
Length = 113
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NPK FL GK + LKW +Y+G L D N +++S E ++ GKL +++IR
Sbjct: 39 NPKQFLKSRLGKRIRISLKWNVDYEGTLDGFDDNFNIEVSSVSEFVESRMVGKLKKMVIR 98
Query: 68 CNNI 71
CNNI
Sbjct: 99 CNNI 102
>gi|402086460|gb|EJT81358.1| U6 snRNA-associated Sm-like protein LSm6 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 83
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPTSFLSDIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVR 72
Query: 68 CNNILYIRGA 77
NN++YI +
Sbjct: 73 GNNVMYIAAS 82
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
VI KLK E++G+L S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 23 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 76
>gi|171680313|ref|XP_001905102.1| hypothetical protein [Podospora anserina S mat+]
gi|170939783|emb|CAP65009.1| unnamed protein product [Podospora anserina S mat+]
Length = 82
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P +L+ + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 13 DPSGWLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
VI KLK E++G+L S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 26 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 79
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
VI KLK E++G+L S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 26 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 79
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
VI KLK E++G+L S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 26 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 79
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
VI KLK E++G+L S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 26 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 79
>gi|238879521|gb|EEQ43159.1| hypothetical protein CAWG_01385 [Candida albicans WO-1]
Length = 92
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
+P FL+ + G SV KL G EYKG L + DG+MN L +E ++G T + G+V
Sbjct: 9 KTDPSKFLSGIIGSSVSVKLHNGVEYKGNLQTIDGFMNVVLDEGKETVNGKVTKEYGDVF 68
Query: 66 IRCNNILY 73
IR NN +Y
Sbjct: 69 IRGNNGMY 76
>gi|149246105|ref|XP_001527522.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447476|gb|EDK41864.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 80
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL + G SV KL G EY+G L + DGYMN L + +E+ID T G+V +
Sbjct: 10 IDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDVFL 69
Query: 67 RCNN 70
R NN
Sbjct: 70 RGNN 73
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
VI KLK E++G+L S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 28 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 81
>gi|448079823|ref|XP_004194473.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
gi|359375895|emb|CCE86477.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
Length = 89
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL+ + G +V KL G EY G L S DGYMN L T+E+I+G+ G+V +
Sbjct: 15 LDPSKFLSEIIGNAVTVKLHNGVEYLGKLQSIDGYMNIVLDETKEVINGNIGRTYGDVFL 74
Query: 67 RCNNILYIR 75
R NN Y++
Sbjct: 75 RGNNGKYLQ 83
>gi|302666925|ref|XP_003025057.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
gi|291189139|gb|EFE44446.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
Length = 86
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL +TG V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFVR 70
Query: 68 CNN 70
NN
Sbjct: 71 GNN 73
>gi|389625893|ref|XP_003710600.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
gi|189028839|sp|A4RQ29.1|LSM6_MAGO7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|351650129|gb|EHA57988.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
Length = 83
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVR 72
Query: 68 CNNILYIRGA 77
NN++YI +
Sbjct: 73 GNNVMYIAAS 82
>gi|302501452|ref|XP_003012718.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
gi|291176278|gb|EFE32078.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
Length = 86
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL +TG V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFVR 70
Query: 68 CNN 70
NN
Sbjct: 71 GNN 73
>gi|66819863|ref|XP_643590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74857296|sp|Q552U1.1|LSM6_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm6
gi|60471654|gb|EAL69610.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 88
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F + G+ V+ KL G EY+GIL DG MN + TEE ++G K G+ +R NN+
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNV 79
Query: 72 LYI 74
LYI
Sbjct: 80 LYI 82
>gi|321265650|ref|XP_003197541.1| u6 snRNA-associated sm-like protein lsm6 [Cryptococcus gattii
WM276]
gi|317464021|gb|ADV25754.1| u6 snRNA-associated sm-like protein lsm6, putative [Cryptococcus
gattii WM276]
Length = 88
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
S P+ +P FL + GK V ++ G +Y G+L DGYMN L EE T
Sbjct: 10 SQPISGSPSEFLRNIVGKRVKVRIGSGVDYTGVLTCLDGYMNVALEQAEEWAGEVKTAVY 69
Query: 62 GEVLIRCNNILYIRGAEE 79
G+ +R NN+LYI E+
Sbjct: 70 GDCFLRGNNVLYISALED 87
>gi|378725534|gb|EHY51993.1| U6 snRNA-associated Sm-like protein LSm6 [Exophiala dermatitidis
NIH/UT8656]
Length = 80
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L E ++G G+ +R
Sbjct: 11 DPASFLSSIIGVPVTVKLNSGVVYKGELQSVDGYMNIALEKCAEYVNGQLRRNYGDAFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>gi|70991347|ref|XP_750522.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus fumigatus
Af293]
gi|66848155|gb|EAL88484.1| U6 snRNA-associated Sm-like protein LSm6, putative [Aspergillus
fumigatus Af293]
gi|159124077|gb|EDP49195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Aspergillus
fumigatus A1163]
Length = 98
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 33/63 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L +EE +DG G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIR 70
Query: 68 CNN 70
NN
Sbjct: 71 GNN 73
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK E++GIL S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 21 VLIKLKGDREFRGILKSFDLHMNLVLNDAEELQDGEVTRRLGVVLIRGDNIVYI 74
>gi|448084319|ref|XP_004195573.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
gi|359376995|emb|CCE85378.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
Length = 89
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G SV KL G EY G L S DGYMN L T+E+I+G+ G+V +R
Sbjct: 16 DPSKFLSEIIGNSVTVKLHNGVEYLGKLQSIDGYMNIVLDETKEVINGNIGRAYGDVFLR 75
Query: 68 CNN 70
NN
Sbjct: 76 GNN 78
>gi|255938622|ref|XP_002560081.1| Pc14g00870 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584702|emb|CAP74228.1| Pc14g00870 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 134
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 11 DPSLFLSEIIGAPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKLRRNYGDAFVR 70
Query: 68 CNNI 71
NN+
Sbjct: 71 GNNV 74
>gi|161899107|ref|XP_001712780.1| mRNA splicing factor snRNP-F [Bigelowiella natans]
gi|75756273|gb|ABA27168.1| mRNA splicing factor snRNP-F [Bigelowiella natans]
Length = 78
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 7 CNPKPFLNLLTGKSV-ICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
CNPKPFL L G+ + I + + + GILVS D +MN Q+ +T E I G G +GE+
Sbjct: 5 CNPKPFLKNLVGEKITIYVILKDYSFNGILVSFDSWMNIQMFNTNESIKGMNIGPIGEIF 64
Query: 66 IRCN 69
++C+
Sbjct: 65 LKCS 68
>gi|119467878|ref|XP_001257745.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119405897|gb|EAW15848.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 98
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G Y+G L S DGYMN L +EE +DG G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIR 70
Query: 68 CNN 70
NN
Sbjct: 71 GNN 73
>gi|121709856|ref|XP_001272544.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119400694|gb|EAW11118.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 108
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L ++E +DG G+ IR
Sbjct: 10 DPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIR 69
Query: 68 CNNILY 73
NN LY
Sbjct: 70 GNNGLY 75
>gi|440634891|gb|ELR04810.1| U6 snRNA-associated Sm-like protein LSm6 [Geomyces destructans
20631-21]
Length = 83
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + +V KL G YKG L S DGYMN L + E +DG G+ IR
Sbjct: 14 DPSGFLGEIINSAVTVKLNSGVVYKGSLQSVDGYMNIALENCTEHVDGARRRSYGDAFIR 73
Query: 68 CNNILYI 74
NN++YI
Sbjct: 74 GNNVMYI 80
>gi|189028852|sp|Q0UWI9.2|LSM6_PHANO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 89
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L +E+ +G G+ +R
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVR 77
Query: 68 CNNILYI 74
NN+ YI
Sbjct: 78 GNNVTYI 84
>gi|299740542|ref|XP_001833825.2| hypothetical protein CC1G_01502 [Coprinopsis cinerea
okayama7#130]
gi|189028857|sp|A8NHT8.2|LSM6_COPC7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|298404296|gb|EAU87855.2| hypothetical protein CC1G_01502 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+GIL DGYMN + TEE ++G + G+ IR
Sbjct: 23 SPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAFIR 82
Query: 68 CNNILYIRGAE 78
NN+LYI E
Sbjct: 83 GNNVLYISADE 93
>gi|221486867|gb|EEE25113.1| snRNA-associated Sm-like protein, putative [Toxoplasma gondii
GT1]
Length = 84
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+T +P FL + G+ V+ +L G +Y+G+L D MN + EE +DG+
Sbjct: 1 MATSAKKSPSDFLQKVIGQRVVVRLSNGTDYRGVLTCLDDRMNIAMDKAEEFVDGNFVAA 60
Query: 61 LGEVLIRCNN 70
G LIR NN
Sbjct: 61 YGLSLIRGNN 70
>gi|350630884|gb|EHA19256.1| hypothetical protein ASPNIDRAFT_202763 [Aspergillus niger ATCC
1015]
Length = 77
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L +EE ++G + G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEFVNGKLSRSYGDAFIR 70
Query: 68 CNNIL 72
NN L
Sbjct: 71 GNNGL 75
>gi|323455823|gb|EGB11691.1| hypothetical protein AURANDRAFT_21376 [Aureococcus
anophagefferens]
Length = 104
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI--------------- 52
P FL + G+ VI KL G Y+GIL DGYMN + TEE
Sbjct: 14 QPSDFLKAVLGRPVIVKLNSGVSYRGILACLDGYMNIAMEQTEEYARRGARETARARAAR 73
Query: 53 -IDGHCTGKLGEVLIRCNNILYI 74
+DG K G+ IR NN+ YI
Sbjct: 74 RVDGQLKAKYGDCFIRGNNVHYI 96
>gi|405123901|gb|AFR98664.1| hypothetical protein CNAG_06426 [Cryptococcus neoformans var.
grubii H99]
Length = 88
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P+ +P FL + GK V ++ G +Y G+L DGYMN L EE T G+
Sbjct: 12 PVSGSPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGD 71
Query: 64 VLIRCNNILYIRGAEE 79
+R NN+LYI E+
Sbjct: 72 CFLRGNNVLYISALED 87
>gi|340520476|gb|EGR50712.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G SV+ KL G YKG L S DGYMN L T E ++G + G+ +R
Sbjct: 13 DPSSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGVKRREYGDTFVR 72
Query: 68 CNN 70
NN
Sbjct: 73 GNN 75
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ +LK E++GIL S D +MN L EEI +G T KLG VLIR +NI+YI
Sbjct: 25 VLIRLKGEREFRGILKSFDLHMNLVLNDAEEIENGEVTRKLGTVLIRGDNIVYI 78
>gi|354544771|emb|CCE41496.1| hypothetical protein CPAR2_800480 [Candida parapsilosis]
Length = 79
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL L G V KL G EY+G L + DGYMN L + +E I T G++ +
Sbjct: 9 TDPSKFLGDLIGSPVKVKLYSGVEYRGDLQTIDGYMNVVLENGKEFIKDTMTRDYGDLFL 68
Query: 67 RCNNILYI 74
R N +LYI
Sbjct: 69 RGNTVLYI 76
>gi|58262422|ref|XP_568621.1| u6 snRNA-associated sm-like protein lsm6 [Cryptococcus neoformans
var. neoformans JEC21]
gi|134118926|ref|XP_771966.1| hypothetical protein CNBN1460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818356|sp|P0CR25.1|LSM6_CRYNB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|338818357|sp|P0CR24.1|LSM6_CRYNJ RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|50254570|gb|EAL17319.1| hypothetical protein CNBN1460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230795|gb|AAW47104.1| u6 snRNA-associated sm-like protein lsm6, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 88
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P+ +P FL + GK V ++ G +Y G+L DGYMN L EE T G+
Sbjct: 12 PVSGSPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGD 71
Query: 64 VLIRCNNILYIRGAEE 79
+R NN+LYI E+
Sbjct: 72 CFLRGNNVLYISALED 87
>gi|325185112|emb|CCA19604.1| U6 snRNAassociated Smlike protein LSm6 putative [Albugo laibachii
Nc14]
Length = 81
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V KL G EY+G+L DG+MN + T+E I+G + G+ IR
Sbjct: 13 PSDFLKNVLGRPVDVKLNNGSEYRGVLACLDGFMNIAMEQTQEYINGQLKAQYGDCFIRG 72
Query: 69 NN 70
NN
Sbjct: 73 NN 74
>gi|428673255|gb|EKX74168.1| small nuclear ribonucleoprotein f, putative [Babesia equi]
Length = 82
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P ++N +T K VI KL G +++GIL S D MN + +T+E +DG G+ I
Sbjct: 4 SSPSAYINGITRKPVIVKLNNGSDFRGILASLDERMNIAMENTKEYLDGELVKTYGDAFI 63
Query: 67 RCNN 70
R NN
Sbjct: 64 RGNN 67
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
P L V+ KLK G E++G+L S D +MN L EE+ G + +LG VLI
Sbjct: 10 SRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRRLGVVLI 69
Query: 67 RCNNILYI 74
R +NI+YI
Sbjct: 70 RGDNIVYI 77
>gi|255722679|ref|XP_002546274.1| hypothetical protein CTRG_01056 [Candida tropicalis MYA-3404]
gi|240136763|gb|EER36316.1| hypothetical protein CTRG_01056 [Candida tropicalis MYA-3404]
Length = 102
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
+P FL+ + G V KL G EYKG L + DG+MN L +E ++G T + G+V
Sbjct: 9 KTDPSKFLSDIIGSLVTVKLHNGVEYKGNLQTIDGFMNVVLEDGKESVNGSITKEYGDVF 68
Query: 66 IRCNNILY 73
IR NN +Y
Sbjct: 69 IRGNNGMY 76
>gi|443895494|dbj|GAC72840.1| small nuclear ribonucleoprotein F [Pseudozyma antarctica T-34]
Length = 90
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GKSV +L G +Y+G+L DGYMN L +T E +DG G+ IR
Sbjct: 12 PNDFLKGVIGKSVNVRLNSGIDYQGVLSCLDGYMNIALENTTEYVDGVKKNNYGDAFIRG 71
Query: 69 NN 70
NN
Sbjct: 72 NN 73
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK G E++G+L S D +MN L EE+ G + +LG VLIR +NI+YI
Sbjct: 24 VLIKLKGGREFRGVLNSFDMHMNLVLNDAEELESGESSRRLGVVLIRGDNIVYI 77
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN SVI +LK E++G+L D +MN L EE+ DG K+G V+IR
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEIVRKIGGVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>gi|118577120|ref|YP_876863.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118195641|gb|ABK78559.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 106
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L T K+V +LK EYKG + + D YMN + EE D G V++R
Sbjct: 35 PLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAEEFHDSKVVANYGRVIVRG 94
Query: 69 NNILYIR 75
NN+L+IR
Sbjct: 95 NNVLFIR 101
>gi|328868532|gb|EGG16910.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 95
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G+ V+ KL G EY+GIL DG MN + TEE ++G K G+ +R NN+LYI
Sbjct: 33 GRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNVLYI 89
>gi|164422788|ref|XP_001727995.1| hypothetical protein NCU10352 [Neurospora crassa OR74A]
gi|157069821|gb|EDO64904.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 105
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE I+G G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFVR 72
Query: 68 CNN 70
NN
Sbjct: 73 GNN 75
>gi|357512225|ref|XP_003626401.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|355501416|gb|AES82619.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
Length = 75
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGH 56
MS + +P PFLN LTGK V+ KLKW YK LVS D MN LA+T+ + D
Sbjct: 1 MSAVVVDHPNPFLNKLTGKPVLVKLKWEMGYKSYLVSLDSCMNLLLANTKGLFDSQ 56
>gi|189028861|sp|A6S5C9.2|LSM6_BOTFB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|347826617|emb|CCD42314.1| similar to U6 snRNA-associated Sm-like protein LSm6 [Botryotinia
fuckeliana]
Length = 85
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL +KG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPSSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVR 72
Query: 68 CNNILYIRGAE 78
NN++YI E
Sbjct: 73 GNNVMYISADE 83
>gi|361131665|gb|EHL03317.1| putative U6 snRNA-associated Sm-like protein LSm6 [Glarea
lozoyensis 74030]
Length = 106
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 13 DPSGFLSEIIGSQVTVKLNSGVVYKGELQSVDGYMNIALEKTEEHVNGVKKRSYGDAFVR 72
Query: 68 CNNILYIRGAEEGDEEGEM 86
NN + I ++E EG++
Sbjct: 73 GNNGVRI--SKENSLEGDL 89
>gi|46107150|ref|XP_380634.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1]
Length = 106
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L T E ++G + G+ +R
Sbjct: 13 DPSSFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGQKRREYGDAFVR 72
Query: 68 CNNIL 72
NN++
Sbjct: 73 GNNVM 77
>gi|116206862|ref|XP_001229240.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183321|gb|EAQ90789.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 93
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVR 72
Query: 68 CNN 70
NN
Sbjct: 73 GNN 75
>gi|342889202|gb|EGU88369.1| hypothetical protein FOXB_01168 [Fusarium oxysporum Fo5176]
Length = 77
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L T E ++G + G+ +R
Sbjct: 13 DPSSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGQKRREYGDAFVR 72
Query: 68 CNN 70
NN
Sbjct: 73 GNN 75
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L V+ KLK G E++G+L S D +MN L EE+ G + +LG VLIR
Sbjct: 32 PLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRRLGVVLIRG 91
Query: 69 NNILYI 74
+NI+YI
Sbjct: 92 DNIVYI 97
>gi|393795269|ref|ZP_10378633.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 81
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
T P L T K V +LK EYKG + + D YMN + EE+ DG G
Sbjct: 4 TSSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGKTIANYG 63
Query: 63 EVLIRCNNILYIR 75
V++R NN+L+I+
Sbjct: 64 RVIVRGNNVLFIK 76
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 20 SVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK G E++G L S D +MN L EEI DG +LG VL+R +NI+YI
Sbjct: 24 QVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEIKDGESICRLGVVLVRGDNIVYI 78
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P P LN VI +LK G E++G L D +MN L EEI +G K+G V
Sbjct: 1 MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSV 60
Query: 65 LIRCNNILYIRGAEEGD 81
+IR + ++++ A G+
Sbjct: 61 VIRGDTVVFVSPAPGGE 77
>gi|407463901|ref|YP_006774783.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047089|gb|AFS81841.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 81
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L T K V +LK EYKG + + D YMN + EE+ DG G V++R
Sbjct: 10 PLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGKTIANYGRVIVRG 69
Query: 69 NNILYIR 75
NN+L+I+
Sbjct: 70 NNVLFIK 76
>gi|340343951|ref|ZP_08667083.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519092|gb|EGP92815.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 81
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
T P L T K V +LK EYKG + + D YMN + EE DG G
Sbjct: 4 TSSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEEFHDGKVIANYG 63
Query: 63 EVLIRCNNILYIR 75
V++R NN+L+I+
Sbjct: 64 RVIVRGNNVLFIK 76
>gi|50421459|ref|XP_459280.1| DEHA2D18282p [Debaryomyces hansenii CBS767]
gi|49654947|emb|CAG87454.1| DEHA2D18282p [Debaryomyces hansenii CBS767]
Length = 84
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL+ + G SV +L G EY G L S DGYMN L T+E + G G+V IR
Sbjct: 17 PSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRG 76
Query: 69 NN 70
NN
Sbjct: 77 NN 78
>gi|71033743|ref|XP_766513.1| U6 small nuclear ribonucleoprotein [Theileria parva strain
Muguga]
gi|68353470|gb|EAN34230.1| U6 small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 77
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P ++ +T K V+ KL G ++KG L S D MN + +T E +DG G+ IR
Sbjct: 6 PSAYITSITRKPVLVKLNNGSDFKGTLASLDERMNLAMENTCEFLDGVMVKSYGDAFIRG 65
Query: 69 NNILYI 74
NN+ YI
Sbjct: 66 NNVYYI 71
>gi|258568810|ref|XP_002585149.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
gi|237906595|gb|EEP80996.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
Length = 144
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG SV KL G YK DGYMN L T+E IDG G+V +R
Sbjct: 11 DPSAFLSGITGASVTVKLNSGVVYK------DGYMNIALEKTQEYIDGKLRNSYGDVFVR 64
Query: 68 CNN 70
NN
Sbjct: 65 GNN 67
>gi|189028853|sp|A7F5M4.2|LSM6_SCLS1 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL +KG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>gi|71004746|ref|XP_757039.1| hypothetical protein UM00892.1 [Ustilago maydis 521]
gi|46096843|gb|EAK82076.1| hypothetical protein UM00892.1 [Ustilago maydis 521]
Length = 82
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK+V +L G +Y+G+L DGYMN L T E +DG G+ IR
Sbjct: 15 PNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGDAFIRA 74
Query: 69 NNIL 72
+N L
Sbjct: 75 SNSL 78
>gi|449270153|gb|EMC80868.1| Small nuclear ribonucleoprotein F, partial [Columba livia]
Length = 45
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 45 QLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
+LA+TEE IDG +G LGEVLIRCNN+LYIRG
Sbjct: 2 KLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 34
>gi|169601996|ref|XP_001794420.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
gi|111067960|gb|EAT89080.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
Length = 84
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L +E+ +G G+ +R
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVR 77
Query: 68 CNNILYI 74
NN L++
Sbjct: 78 GNNGLFL 84
>gi|300123335|emb|CBK24608.2| unnamed protein product [Blastocystis hominis]
Length = 79
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F+ + GK VI L G YKGIL S DG++N L EE DG + + +R NNI
Sbjct: 11 FIASVYGKPVIIGLFTGVIYKGILGSLDGFLNVVLEQAEEYNDGKFVARFNDCFLRGNNI 70
Query: 72 LYIRGAEE 79
+YI +E
Sbjct: 71 MYIAPNDE 78
>gi|119872589|ref|YP_930596.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673997|gb|ABL88253.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 80
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ HE +GIL S D ++N L EEIIDG+ K G ++IR N+L+I
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEIIDGNVY-KRGTIVIRGENVLFI 76
>gi|406862548|gb|EKD15598.1| putative U6 snRNA-associated Sm-like protein LSm6 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 173
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G SV KL G YKG L S DGYMN L EE +DG G+ +R
Sbjct: 12 DPSGFLSEIIGSSVTVKLNSGVVYKGELQSIDGYMNLALEKCEEHVDGVKRRSYGDAFVR 71
Query: 68 CNN 70
NN
Sbjct: 72 GNN 74
>gi|403221355|dbj|BAM39488.1| uncharacterized protein TOT_010000943 [Theileria orientalis
strain Shintoku]
Length = 79
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P +++ + K+V+ KL G +YKGIL D MN + T E +DG G+ IR
Sbjct: 6 PSQYISSILRKNVVVKLYNGCDYKGILAGLDERMNLAMEDTAEYLDGKHVKTYGDAFIRG 65
Query: 69 NNILYI 74
NN+ YI
Sbjct: 66 NNVYYI 71
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN V+ +LK G E++GIL D +MN L + EEI +G KLG V+IR
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNIVLENAEEIQNGEVVRKLGSVVIRG 64
Query: 69 NNILYIRGAE 78
+ ++++ +E
Sbjct: 65 DTVVFVSPSE 74
>gi|171184523|ref|YP_001793442.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170933735|gb|ACB38996.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 80
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ HE +GIL S D ++N L EEIIDG+ K G +++R N+L+I
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEIIDGNVY-KRGTIVVRGENVLFI 76
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ HE +G+L S D ++N L EEIIDG+ K G +++R N+L+I
Sbjct: 21 GKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEIIDGNVF-KRGTIVVRGENVLFI 76
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM
1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
TP P L ++V+ +K EY GIL D YMN L + EII+G G
Sbjct: 4 TPANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYD 63
Query: 63 EVLIRCNNILYI 74
VL+R +N++++
Sbjct: 64 RVLVRGDNVIFV 75
>gi|336272335|ref|XP_003350924.1| hypothetical protein SMAC_04229 [Sordaria macrospora k-hell]
Length = 93
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGIL-----------VSTDGYMNCQLASTEEIIDGH 56
+P FL+ + G V KL G YKG L S DGYMN L TEE I+G
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGRLGWGALGGTGELQSVDGYMNIALEKTEEYINGV 72
Query: 57 CTGKLGEVLIRCNNILYI 74
G+ +R NN++YI
Sbjct: 73 KRRSYGDAFVRGNNVMYI 90
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI KLK G ++G L D +MN L +TEEI +G + KLG V++R
Sbjct: 5 PLDILNESLNGPVIVKLKDGRAFRGELQGYDIHMNLVLDNTEEIREGEDSKKLGTVVVRG 64
Query: 69 NNILYI 74
+N++YI
Sbjct: 65 DNVVYI 70
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L + EE+ DG KLG V+IR
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGELQGYDVHMNLVLDNAEELKDGEIVRKLGSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYL 70
>gi|161527598|ref|YP_001581424.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407461586|ref|YP_006772903.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|160338899|gb|ABX11986.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407045208|gb|AFS79961.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 81
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L T K V +LK EYKG + + D YMN + EE+ +G G V++R
Sbjct: 10 PLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHEGKTIANYGRVIVRG 69
Query: 69 NNILYIR 75
NN+L+I+
Sbjct: 70 NNVLFIK 76
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ HE +GIL S D ++N L EEIIDG+ K G +++R N+L+I
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTMVVRGENVLFI 76
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ HE +GIL S D ++N L EEIIDG+ K G +++R N+L+I
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTMVVRGENVLFI 76
>gi|397639780|gb|EJK73758.1| hypothetical protein THAOC_04600 [Thalassiosira oceanica]
Length = 104
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 23/86 (26%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKG-----------------------ILVSTDGYMNC 44
+P FL + G+SV+ +L G +YKG +L DGYMN
Sbjct: 12 SPSDFLKAVLGRSVVVRLNSGTDYKGGKTGEARAASIDSKYSASPLLLGVLACLDGYMNI 71
Query: 45 QLASTEEIIDGHCTGKLGEVLIRCNN 70
+ TEE +DG K G+ IR NN
Sbjct: 72 AMEQTEEYVDGQLKSKYGDCFIRGNN 97
>gi|385303090|gb|EIF47187.1| u6 snrna-associated sm-like protein [Dekkera bruxellensis
AWRI1499]
Length = 81
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
+L+ +T VI KL G EY GIL S DG+MN L E + E+ +R NN+
Sbjct: 16 YLSGITSSPVIVKLNNGFEYHGILSSIDGFMNIVLEKCSEQVGSKVVKNYNELFLRGNNV 75
Query: 72 LYIRGA 77
+YI A
Sbjct: 76 MYISQA 81
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK E++GIL S D +MN L EE+ G +LG VLIR +NI+YI
Sbjct: 22 VLIKLKGEREFRGILKSFDLHMNLVLDDAEELEKGEVLRRLGTVLIRGDNIVYI 75
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN +VI +LK E++G L D +MN L EEI +G K+G V++R
Sbjct: 5 PLDILNNALNTAVIVRLKGAREFRGTLQGYDVHMNLVLDEAEEIKEGEIIRKIGSVVVRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA+ E + DG K G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKIVIRGDNVLAISPTE 74
Query: 79 EG 80
EG
Sbjct: 75 EG 76
>gi|145535682|ref|XP_001453574.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421296|emb|CAK86177.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
F + G++V KL EY G+L + DG MN L EE ++ K G++L+R NN
Sbjct: 10 DFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEYLEQKLINKYGQILLRGNN 69
Query: 71 ILYIRGAEEGDEEGE 85
+LYI ++ E
Sbjct: 70 VLYISAKFNQKQQQE 84
>gi|145508998|ref|XP_001440443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407660|emb|CAK73046.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
F + G++V KL EY G+L + DG MN L EE ++ K G++L+R NN
Sbjct: 10 DFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEYLEQKLINKYGQILLRGNN 69
Query: 71 ILYIRGAEEGDEEGE 85
+LYI ++ E
Sbjct: 70 VLYISAKFNQKQQQE 84
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +L+ E++G L D +MN L + EE+ DG KLG V+IR
Sbjct: 5 PLDILNNALNTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEELNDGEIVRKLGSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG K G+++IR +N+L I +E
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKKYGKIVIRGDNVLAISPSE 74
Query: 79 E 79
E
Sbjct: 75 E 75
>gi|374632978|ref|ZP_09705345.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524462|gb|EHP69339.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 86
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLGEVL 65
NP L + T K V+ KLK G EY G L +DG MN L E+ +G K G VL
Sbjct: 7 NPLKSLRMATNKVVLVKLKDGSEYIGRLEQSDGTMNLVLRDCTELKEGTVDPIAKYGRVL 66
Query: 66 IRCNNILYI 74
IR +NIL+I
Sbjct: 67 IRGSNILFI 75
>gi|294876061|ref|XP_002767532.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239869192|gb|EER00250.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 100
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG----KLGEV 64
P FL + G V +L G +Y G L++ DG+MN + E DG +G + G+
Sbjct: 11 PGDFLREVRGCGVRVRLNDGTDYTGQLLALDGFMNLAMDDAIEFPDGVNSGSEGRRYGQA 70
Query: 65 LIRCNNILYIRGAEEGDEE 83
+IR NN+LYI E EE
Sbjct: 71 VIRGNNVLYISMLERKQEE 89
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ HE +GIL + D ++N L EEIIDG+ K G +++R N+L+I
Sbjct: 21 GKQVLVKLRDSHEIRGILKAFDQHVNLLLDDAEEIIDGNVY-KRGTIVVRGENVLFI 76
>gi|83286035|ref|XP_729985.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489339|gb|EAA21550.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 81
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 22/29 (75%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGI 34
P NPKPFLN L G VI KLKWG EYKGI
Sbjct: 51 PLNPKPFLNSLVGNRVIIKLKWGMEYKGI 79
>gi|440468641|gb|ELQ37792.1| LSM domain-containing protein [Magnaporthe oryzae Y34]
gi|440478854|gb|ELQ59653.1| LSM domain-containing protein [Magnaporthe oryzae P131]
Length = 76
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 31/63 (49%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVR 72
Query: 68 CNN 70
NN
Sbjct: 73 GNN 75
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG K G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKKYGKIVIRGDNVLAISPTE 74
Query: 79 E 79
E
Sbjct: 75 E 75
>gi|330835700|ref|YP_004410428.1| Sm-like ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567839|gb|AEB95944.1| Sm-like ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 87
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLGEVL 65
NP L + T K+V+ KLK G EY G + +DG MN L E+ +G K G VL
Sbjct: 7 NPLKSLRMATNKTVLVKLKDGSEYIGKMEQSDGTMNLVLRDCTEMKEGTADPIAKYGRVL 66
Query: 66 IRCNNILYI 74
IR +N+L++
Sbjct: 67 IRGSNVLFV 75
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L EE+ +G KLG V+IR
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGKLQGYDVHMNLVLDEAEELKEGDIVRKLGSVVIRG 64
Query: 69 NNILYI 74
+NI+Y+
Sbjct: 65 DNIVYV 70
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 7 CNPKPF--LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
N KP L ++V+ +K EY GIL D YMN L + EII+G G +
Sbjct: 10 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRI 69
Query: 65 LIRCNNILYIRGAEEGDEE 83
L+R +N++++ +GD E
Sbjct: 70 LVRGDNVIFV-SPSKGDNE 87
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 7 CNPKPF--LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
N KP L ++V+ +K EY GIL D YMN L + EII+G G +
Sbjct: 6 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRI 65
Query: 65 LIRCNNILYIRGAEEGDEE 83
L+R +N++++ +GD E
Sbjct: 66 LVRGDNVIFV-SPSKGDNE 83
>gi|254570317|ref|XP_002492268.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032066|emb|CAY69988.1| Hypothetical protein PAS_chr3_0060 [Komagataella pastoris GS115]
Length = 86
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MST +P FL+ +TG+ V+ K++ G E G L S DG+MN L +T G T
Sbjct: 1 MSTA-RVDPSEFLSRITGEKVVVKMRDGTECHGALQSIDGFMNVALENTVGKYKGETTKT 59
Query: 61 LGEVLIRCNN 70
G+V IR N
Sbjct: 60 YGDVFIRGTN 69
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
P LN V+ +LK G E++G L D +MN L EEI +G KLG V+I
Sbjct: 2 ARPLDVLNKALKTPVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEIQNGEVVRKLGSVVI 61
Query: 67 RCNNILYI 74
R + ++++
Sbjct: 62 RGDTVVFV 69
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E + DG K G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKIVIRGDNVLAISPTE 74
Query: 79 E 79
E
Sbjct: 75 E 75
>gi|146303015|ref|YP_001190331.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145701265|gb|ABP94407.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 87
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLGEVL 65
NP L + T K V+ KLK G EY G + +DG MN L E+ +G K G VL
Sbjct: 7 NPLKSLRMATNKIVLVKLKDGSEYIGKMEQSDGTMNLVLRDCTEMREGTADPIAKYGRVL 66
Query: 66 IRCNNILYI 74
IR +NIL+I
Sbjct: 67 IRGSNILFI 75
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN V+ +LK G E++GIL D +MN L + EEI G KLG V+IR
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEIQGGEVIRKLGSVVIRG 64
Query: 69 NNILYI 74
+ ++++
Sbjct: 65 DTVVFV 70
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG + G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 74
Query: 79 E 79
E
Sbjct: 75 E 75
>gi|399217445|emb|CCF74332.1| unnamed protein product [Babesia microti strain RI]
Length = 84
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P F+ +T V+ +L G +KGIL D MN + +T+E I+G + G+ I
Sbjct: 4 ASPSSFITSVTRNPVVVRLNNGSNFKGILACLDERMNISMENTKEYINGVLVKEYGDSFI 63
Query: 67 RCNN-------ILYIRGAEEG 80
R NN +LYIR +G
Sbjct: 64 RGNNGKCLVYLVLYIRTDNDG 84
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ + P LN GK V+ +LK GH G LV+ D ++N L + EE D K
Sbjct: 1 MAENVLSRPLDLLNSAKGKMVLVELKNGHAITGKLVAFDVHINVTLENAEEKKDADTLRK 60
Query: 61 LGEVLIRCNNILYI 74
LG V IR + I+ I
Sbjct: 61 LGNVFIRGDTIILI 74
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG + G+++IR +N+L I E
Sbjct: 17 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 76
Query: 79 E 79
E
Sbjct: 77 E 77
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L + EE+ +G K G V+IR
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>gi|242206420|ref|XP_002469066.1| predicted protein [Postia placenta Mad-698-R]
gi|220731931|gb|EED85771.1| predicted protein [Postia placenta Mad-698-R]
Length = 63
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+G+L DGYMN L TEE ++G T + G+ IR
Sbjct: 1 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGAVTNRYGDAFIR 60
Query: 68 CNN 70
NN
Sbjct: 61 GNN 63
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L + EE+ DG K V+IR
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>gi|413947546|gb|AFW80195.1| hypothetical protein ZEAMMB73_084588 [Zea mays]
Length = 43
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 35 LVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
L S D YMN QLA+TEE IDG +G LGE+LIR
Sbjct: 11 LASVDSYMNLQLANTEEYIDGQFSGNLGEILIR 43
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 15 LLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
+L G+ VI LK E +G+L D +MN L EE+ DG T K+G +++R +N++YI
Sbjct: 12 VLNGEPVIVSLKGDRELRGVLQGYDVHMNLVLDKAEEVTDG-ATQKIGTLIVRGDNVIYI 70
>gi|15897150|ref|NP_341755.1| small nuclear riboprotein (snRNP-1) [Sulfolobus solfataricus P2]
gi|227828196|ref|YP_002829976.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830955|ref|YP_002832735.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579833|ref|YP_002838232.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229581507|ref|YP_002839906.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229585425|ref|YP_002843927.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238620387|ref|YP_002915213.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284174395|ref|ZP_06388364.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
gi|284998443|ref|YP_003420211.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|384433662|ref|YP_005643020.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|385773873|ref|YP_005646440.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus HVE10/4]
gi|385776515|ref|YP_005649083.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus REY15A]
gi|13813335|gb|AAK40545.1| Small nuclear riboprotein protein (snRNP-1) [Sulfolobus
solfataricus P2]
gi|227457403|gb|ACP36090.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459992|gb|ACP38678.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228010548|gb|ACP46310.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012223|gb|ACP47984.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228020475|gb|ACP55882.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238381457|gb|ACR42545.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|261601816|gb|ACX91419.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
gi|284446339|gb|ADB87841.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323475263|gb|ADX85869.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus REY15A]
gi|323477988|gb|ADX83226.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus HVE10/4]
Length = 87
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLGEVL 65
NP L + V+ KLK G EY G L TDG MN L EI +G K G VL
Sbjct: 7 NPLKSLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVAKYGRVL 66
Query: 66 IRCNNILYI 74
IR +NIL+I
Sbjct: 67 IRGSNILFI 75
>gi|395646750|ref|ZP_10434610.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
gi|395443490|gb|EJG08247.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
Length = 88
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 14 NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILY 73
+L G+ VI LK GHE +G+L D ++N L EE +DG K G +++R +N++Y
Sbjct: 24 QVLNGQPVIISLKGGHEIRGVLQGYDVHLNLVLDRAEEEVDGAVV-KRGTLIVRGDNVIY 82
Query: 74 I 74
I
Sbjct: 83 I 83
>gi|398395245|ref|XP_003851081.1| hypothetical protein MYCGRDRAFT_74163 [Zymoseptoria tritici
IPO323]
gi|339470960|gb|EGP86057.1| hypothetical protein MYCGRDRAFT_74163 [Zymoseptoria tritici
IPO323]
Length = 98
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYK-GILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL+ + G V KL G YK G L S DGYMN L T+E++DG G+ +
Sbjct: 17 DPSGFLSEIIGAPVTVKLNSGVVYKVGELQSVDGYMNIALEDTKEMVDGKQRRNYGDAFV 76
Query: 67 RCNN 70
R NN
Sbjct: 77 RGNN 80
>gi|396458410|ref|XP_003833818.1| hypothetical protein LEMA_P065790.1 [Leptosphaeria maculans JN3]
gi|312210366|emb|CBX90453.1| hypothetical protein LEMA_P065790.1 [Leptosphaeria maculans JN3]
Length = 106
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILV-----------------STDGYMNCQLASTE 50
+P FL+ + G V KL G YKG+L S DGYMN L
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGIIYKGVLARAQVTFSCLTSRIGELQSVDGYMNIALERCR 77
Query: 51 EIIDGHCTGKLGEVLIRCNNILYI 74
E+ +G T G+ +R NN+ YI
Sbjct: 78 EVSEGRVTRNWGDAFVRGNNVTYI 101
>gi|255717166|ref|XP_002554864.1| KLTH0F15620p [Lachancea thermotolerans]
gi|238936247|emb|CAR24427.1| KLTH0F15620p [Lachancea thermotolerans CBS 6340]
Length = 84
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL----GEV 64
FL+ + G+SV+ KL G Y+G+L S DG+MN L E + G L G+V
Sbjct: 12 SAQFLSNIIGQSVVVKLHNGMLYQGVLESIDGFMNIALNQATEHYETASNGLLHRYDGDV 71
Query: 65 LIRCNNILYIRGA 77
+R +LYI A
Sbjct: 72 FVRGTQVLYISEA 84
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG K G+++IR +N+L I +
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDGEVVKKYGKIVIRGDNVLAISPVD 74
Query: 79 EGDE 82
G E
Sbjct: 75 VGVE 78
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 7 CNPKPFL---NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P+P +L + VI LK G E +GIL D +MN L EE +DG KLG
Sbjct: 1 MTPRPLDILDQVLNRQPVIISLKGGREIRGILQGYDVHMNLVLDKAEEEVDG-AAQKLGT 59
Query: 64 VLIRCNNILYIRGAEE 79
+++R +N++YI + E
Sbjct: 60 LIVRGDNVIYITPSVE 75
>gi|305663921|ref|YP_003860209.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304378490|gb|ADM28329.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 94
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG--HCTGKLGEV 64
P L KS++ K+K G EY G LV TD MN L E DG K G +
Sbjct: 10 ITPMRILRGSMNKSILVKVKEGSEYIGRLVMTDATMNVVLEDATEFSDGGKDVVAKYGRI 69
Query: 65 LIRCNNILYI 74
LIR + IL+I
Sbjct: 70 LIRGSQILFI 79
>gi|403416789|emb|CCM03489.1| predicted protein [Fibroporia radiculosa]
Length = 91
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
FL + GK V+ +L G +Y+G+L DGYMN L TEE +DG T + G+ IR NN
Sbjct: 30 DFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVDGAVTNRYGDAFIRGNN 89
>gi|345326618|ref|XP_003431064.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Ornithorhynchus anatinus]
Length = 54
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
+G+L DGYMN L TEE ++G K G+ IR NN+LYI
Sbjct: 5 EGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 47
>gi|389585081|dbj|GAB67812.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium cynomolgi
strain B]
Length = 77
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
PK F+ L G+ VI +L G ++KGIL D MN L TEE +G + IR
Sbjct: 6 PKDFVESLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGEFIESYYDAFIRG 65
Query: 69 NNILYIRGAEE 79
NN+ YIR ++
Sbjct: 66 NNVFYIRAIDD 76
>gi|116753460|ref|YP_842578.1| like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gi|116664911|gb|ABK13938.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 74
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWG--HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
P + L G + ++K H +GIL S D Y+N L T EI++G T LG V++
Sbjct: 3 PNKKVQSLIGTKIQVEMKGSQRHVLEGILNSVDEYLNLHLLETVEIVNGERTRSLGSVIL 62
Query: 67 RCNNILYIRGAE 78
R NNI+ I AE
Sbjct: 63 RGNNIILISPAE 74
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG K G+++IR +N+L I E
Sbjct: 23 KDVLVILKKGFEFRGKLIGYDIHLNVVLADAEMIQDGEVVKKYGKIVIRGDNVLAISPTE 82
>gi|297527121|ref|YP_003669145.1| hypothetical protein Shell_1145 [Staphylothermus hellenicus DSM
12710]
gi|297256037|gb|ADI32246.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 95
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1 MSTPLP--CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-GHC 57
MS P P P +L + V+ K+K GHEY G L D MN L++ +E D G
Sbjct: 5 MSVPKPKTATPLKYLKSAINQIVLVKIKDGHEYIGTLDMVDHTMNVVLSNCQEYGDNGKP 64
Query: 58 TGKLGEVLIRCNNILYI 74
T + G+VLIR ++I++I
Sbjct: 65 TARYGKVLIRGSHIVFI 81
>gi|15920417|ref|NP_376086.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306116|dbj|BAK54205.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 90
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLGEVL 65
NP L T K V+ KLK G EY G L +DG MN L E +G K G VL
Sbjct: 12 NPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGTAEPVAKYGRVL 71
Query: 66 IRCNNILYI 74
IR +NIL+I
Sbjct: 72 IRGSNILFI 80
>gi|294495451|ref|YP_003541944.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666450|gb|ADE36299.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 75
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEY-KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + L G + ++K H GIL S D YMN L T E+++G LG V++R
Sbjct: 3 PNKKVQKLVGSRIQVEMKGDHSLLDGILKSADDYMNLHLEDTFEMVEGERQRSLGSVVLR 62
Query: 68 CNNILYIRGAEE 79
NNI+ I AE+
Sbjct: 63 GNNIILIVPAEK 74
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G+E++G L+ D ++N LA E I DG K G+++IR +N+L + E
Sbjct: 15 KDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKKYGKIVIRGDNVLALSPVE 74
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK G E++G L D +MN L + EE+ + + KLG +++R
Sbjct: 5 PLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTIIVRG 64
Query: 69 NNILYI 74
+ ++Y+
Sbjct: 65 DTVVYV 70
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK G ++G L D +MN L +TEEI +G K+G V++R
Sbjct: 5 PLDILNESLNSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEEIAEGTAR-KIGAVIVRG 63
Query: 69 NNILYI 74
+N++YI
Sbjct: 64 DNVVYI 69
>gi|159042090|ref|YP_001541342.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920925|gb|ABW02352.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 79
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 13 LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNIL 72
L+ + G +V+ KL+ G +G L + D +MN L TEEIID + K G V+IR + +L
Sbjct: 13 LSSVVGSTVLVKLRDGTTIRGTLKNYDQHMNLLLDDTEEIIDPKTSIKRGMVVIRGDTVL 72
Query: 73 YI 74
++
Sbjct: 73 FV 74
>gi|374327713|ref|YP_005085913.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
gi|356642982|gb|AET33661.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
Length = 57
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
++ KL+ HE +GIL S D ++N L EEIIDG+ K G V++R N+L+I
Sbjct: 1 MLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTVVVRGENVLFI 53
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 20 SVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK-LGEVLIRCNNILYI 74
V+ +LK G E++G+L S D +MN L EE+ DG T K LG VLIR +NI+YI
Sbjct: 23 QVLIELKGGREFRGLLKSFDMHMNLVLNEAEEL-DGLETAKRLGIVLIRGDNIVYI 77
>gi|403372449|gb|EJY86123.1| hypothetical protein OXYTRI_15885 [Oxytricha trifallax]
Length = 89
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 15 LLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIRCNNILY 73
++ GK VI KL G Y+G + DG +N L EE+ DG G+ G++ IR NN+ Y
Sbjct: 1 MIKGKQVIVKLNDGTIYRGTYICLDGNLNTVLEKCEELNKDGRVLGRYGDIFIRGNNVCY 60
Query: 74 I 74
I
Sbjct: 61 I 61
>gi|397779277|ref|YP_006543750.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
gi|396937779|emb|CCJ35034.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
Length = 75
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 7 CNPKPFL---NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P+P +L + VI LK G E +G+L D +MN L EE +DG KLG
Sbjct: 1 MTPRPLDILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEEEMDG-AVQKLGT 59
Query: 64 VLIRCNNILYIRGAEE 79
+++R +N++YI + E
Sbjct: 60 LIVRGDNVIYITPSVE 75
>gi|302348366|ref|YP_003816004.1| small nucleolar RNP protein Sm [Acidilobus saccharovorans 345-15]
gi|302328778|gb|ADL18973.1| Putative small nucleolar RNP protein Sm [Acidilobus
saccharovorans 345-15]
Length = 92
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG-HCTGKLGEVL 65
NP +L + KLK G EY G L+ TD MN L ++ E+ DG +LG++L
Sbjct: 10 VNPLRYLRDAVDSQIYVKLKDGTEYVGQLLVTDSTMNLVLDNSVEVKDGKQIVARLGKIL 69
Query: 66 IRCNNILYI 74
IR + + Y+
Sbjct: 70 IRGSMVQYV 78
>gi|119719646|ref|YP_920141.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524766|gb|ABL78138.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 100
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-GHCTGKLGEVLIRCNNILYI 74
+GK V KLK G EY G L TD MN L +E+ + +LG V IR +N+L++
Sbjct: 11 SGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIRGSNLLFV 69
>gi|330507312|ref|YP_004383740.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928120|gb|AEB67922.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 78
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI KLK G ++G L D +MN + TEE+ +G +G V++R
Sbjct: 11 PLDILNESLNGPVIVKLKDGRVFRGELQGYDIHMNLVMDKTEEVAEGAVARNIGTVIVRG 70
Query: 69 NNILYI 74
+N++YI
Sbjct: 71 DNVVYI 76
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L + EE+ +G K V+IR
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>gi|403377342|gb|EJY88664.1| hypothetical protein OXYTRI_00119 [Oxytricha trifallax]
Length = 89
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 15 LLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIRCNNILY 73
++ GK VI KL G Y+G + DG +N L EE+ DG G+ G++ IR NN+ Y
Sbjct: 1 MIKGKQVIVKLNDGTIYRGTYICLDGNLNTVLEKCEELNKDGRVLGRYGDIFIRGNNVCY 60
Query: 74 I 74
I
Sbjct: 61 I 61
>gi|126466194|ref|YP_001041303.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126015017|gb|ABN70395.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 91
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 MSTPLP--CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHC 57
MS P P P +L + V+ K+K GHEY G L D MN L++ +E DG
Sbjct: 1 MSVPKPKTATPLKYLKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGDDGKP 60
Query: 58 TGKLGEVLIRCNNILYI 74
+ G+VLIR ++I++I
Sbjct: 61 IARYGKVLIRGSHIVFI 77
>gi|210075302|ref|XP_500899.2| YALI0B14773p [Yarrowia lipolytica]
gi|199425179|emb|CAG83150.2| YALI0B14773p [Yarrowia lipolytica CLIB122]
Length = 527
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL-GEVLI 66
+P FL ++GK V ++ G + G+L S DGYM+ L + EE++D G +V I
Sbjct: 10 DPSSFLGEISGKKVNVRVSTGTTFSGVLQSVDGYMSIVLENAEELVDDKVVGIYDDDVFI 69
Query: 67 RCNN 70
R NN
Sbjct: 70 RGNN 73
>gi|253743591|gb|EES99946.1| Small nuclear ribonucleoprotein F, putative [Giardia intestinalis
ATCC 50581]
Length = 107
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDG-HCTGKLGEV 64
P FL G+ V+ +LK G EY G LVS D Y N +L + E+ +G H L +V
Sbjct: 28 VTPGRFLTESIGRKVVVRLKGGQEYTGTLVSYDNYYNLRLKNCIEKSREGRHALSSLKDV 87
Query: 65 LIRCNNI 71
IRC ++
Sbjct: 88 FIRCTSV 94
>gi|83286037|ref|XP_729986.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489340|gb|EAA21551.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 44
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 42 MNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGD 81
MN +L S EE I G G LGE+ +RCNN+LYIR E +
Sbjct: 1 MNIRLTSAEEWIRGEYKGTLGEIFLRCNNVLYIREDNESE 40
>gi|408404417|ref|YP_006862400.1| snRNP Sm-like protein [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365013|gb|AFU58743.1| putative snRNP Sm-like protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 145
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
+ V +LK EYKG + + D YMN L EE G+V+IR NN+L+I+
Sbjct: 83 NRKVAVRLKSEIEYKGRMNNVDSYMNLILTDAEEFNGSDVLANYGKVVIRGNNVLFIKLE 142
Query: 78 EE 79
+E
Sbjct: 143 KE 144
>gi|352683089|ref|YP_004893613.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
gi|350275888|emb|CCC82535.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
Length = 79
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ G+E +GIL S D ++N L EE++D + K G +++R N+L++
Sbjct: 21 GKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVVDNNIF-KRGTMVVRGENVLFV 76
>gi|332796288|ref|YP_004457788.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694023|gb|AEE93490.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 87
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLGEVL 65
NP + K V+ KLK G EY G L TDG MN L E+ +G K G VL
Sbjct: 7 NPLKNIKSAVNKIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTELREGTAEPVAKYGRVL 66
Query: 66 IRCNNILYI 74
IR +N+L+I
Sbjct: 67 IRGSNVLFI 75
>gi|156086636|ref|XP_001610727.1| small nuclear ribonucleoprotein F [Babesia bovis T2Bo]
gi|154797980|gb|EDO07159.1| small nuclear ribonucleoprotein F, putative [Babesia bovis]
Length = 83
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P ++ +T K VI KL G ++G+L S D MN + +T+E DG G+ IR
Sbjct: 6 PSSYIANITRKPVIVKLNNGTRFRGLLSSLDDRMNLAMENTKEYCDGELVKAYGDSFIRG 65
Query: 69 NN 70
NN
Sbjct: 66 NN 67
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIR 75
L K VI LK G E +G+L D +MN L + EE I+G T K G +++R +N++YI
Sbjct: 13 LNQKPVIVSLKGGREIRGVLQGYDVHMNLVLENAEEEING-VTTKAGTLIVRGDNVIYIS 71
Query: 76 GAEE 79
+ E
Sbjct: 72 PSVE 75
>gi|413936988|gb|AFW71539.1| hypothetical protein ZEAMMB73_795769 [Zea mays]
Length = 67
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 33 GILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GIL DGYMN + TEE ++G K G+ IR N++LYI
Sbjct: 16 GILACLDGYMNIAMQQTEEYVNGQLKNKYGDAFIRGNDVLYI 57
>gi|327311460|ref|YP_004338357.1| Small nuclear ribonucleoprotein (snRNP) --like protein
[Thermoproteus uzoniensis 768-20]
gi|326947939|gb|AEA13045.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Thermoproteus uzoniensis 768-20]
Length = 75
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KL+ G+E +GIL S D ++N L EE+ID + K G +++R N+L++
Sbjct: 17 GKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVID-NVILKRGTMVVRGENVLFV 72
>gi|330794780|ref|XP_003285455.1| hypothetical protein DICPUDRAFT_13870 [Dictyostelium purpureum]
gi|325084630|gb|EGC38054.1| hypothetical protein DICPUDRAFT_13870 [Dictyostelium purpureum]
Length = 63
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
F + + V+ KL G EY+GIL DG MN + TEE ++G K G+ +R NN
Sbjct: 2 FFKMCIRRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNN 60
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K V+ +K EY+G+L D ++N L + EEII+G G V++R +N++YI
Sbjct: 17 KPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRGDNVIYI 72
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K V+ +K EY+G+L D ++N L + EEII+G G V++R +N++YI
Sbjct: 17 KPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRGDNVIYI 72
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK G E++G L D +MN L + EE+ + + KLG +++R
Sbjct: 5 PLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLENAEELKENEESRKLGTIIVRG 64
Query: 69 NNILYI 74
+ ++Y+
Sbjct: 65 DTVVYV 70
>gi|435851698|ref|YP_007313284.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
gi|433662328|gb|AGB49754.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
Length = 74
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P ++ L G V ++K H +G+L S D Y+N L T EI +G LG V++R
Sbjct: 3 PNKRVHKLVGSRVQVEMKGDLHLLEGLLNSADDYLNLHLLDTVEISNGEKLRSLGSVVLR 62
Query: 68 CNNILYIRGAEE 79
NNI+ I AEE
Sbjct: 63 GNNIILITPAEE 74
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 14 NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILY 73
+L + V+ LK G E KG+L D +MN L EEI+ G +G ++IR +N++Y
Sbjct: 16 QVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIVQGQAQ-SIGTLIIRGDNVIY 74
Query: 74 I 74
I
Sbjct: 75 I 75
>gi|154308522|ref|XP_001553597.1| hypothetical protein BC1G_08321 [Botryotinia fuckeliana B05.10]
Length = 80
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL +KG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPSSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVR 72
Query: 68 CNN 70
NN
Sbjct: 73 GNN 75
>gi|70606592|ref|YP_255462.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449066813|ref|YP_007433895.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449069085|ref|YP_007436166.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|68567240|gb|AAY80169.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449035321|gb|AGE70747.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449037593|gb|AGE73018.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 87
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC--TGKLGEVL 65
NP L K V+ KLK G EY G L +DG MN L E +G K G VL
Sbjct: 7 NPLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYREGTSDPVAKYGRVL 66
Query: 66 IRCNNILYI 74
IR +NIL+I
Sbjct: 67 IRGSNILFI 75
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK G E++G L D +MN L + EE+ + + KLG +++R
Sbjct: 5 PLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEESKKLGTIIVRG 64
Query: 69 NNILYI 74
+ ++Y+
Sbjct: 65 DTVVYV 70
>gi|156036426|ref|XP_001586324.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980]
gi|154698307|gb|EDN98045.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL +KG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVR 72
Query: 68 CNN 70
NN
Sbjct: 73 GNN 75
>gi|429217215|ref|YP_007175205.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133744|gb|AFZ70756.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 90
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG-HCTGKLGEVL 65
+P +L V +LK G E+ GIL TD MN L + E+ DG K+G++L
Sbjct: 8 ISPMKYLRDALNAQVYVRLKDGSEFVGILKMTDSTMNLILEDSIEVKDGKQVVAKIGKIL 67
Query: 66 IRCNNILYI 74
IR + I YI
Sbjct: 68 IRGSMIQYI 76
>gi|401839675|gb|EJT42789.1| LSM6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 86
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
FL+ + GK+V KL G Y G L S DG+MN L+S E H ++L R NN
Sbjct: 15 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATE----HYESNKSKLLNRFNND 70
Query: 72 LYIRGAE 78
+++RG +
Sbjct: 71 VFLRGTQ 77
>gi|308158937|gb|EFO61495.1| Small nuclear ribonucleoprotein F, putative [Giardia lamblia P15]
Length = 106
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDG-HCTGKLGEVL 65
P FL GK V+ +LK G EY G L+S D Y N +L TE+ +G + + L ++
Sbjct: 28 TPGRFLMENIGKEVVVRLKDGREYTGTLISHDSYYNLRLKDCTEKSREGKYASSSLKDIF 87
Query: 66 IRCNNI 71
IRC ++
Sbjct: 88 IRCTSV 93
>gi|124026985|ref|YP_001012305.1| putative snRNP Sm-like protein [Hyperthermus butylicus DSM 5456]
gi|123977679|gb|ABM79960.1| putative snRNP Sm-like protein [Hyperthermus butylicus DSM 5456]
Length = 93
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL--GE 63
P +P L G+ + KLK G EY G LV+TD MN L E+ G K+ G
Sbjct: 8 PVSPLRVLREAVGRVIFVKLKDGSEYVGKLVATDPTMNLVLDECVELKPGTMERKVKYGR 67
Query: 64 VLIRCNNILYI 74
VLIR ++++Y+
Sbjct: 68 VLIRGSHVVYV 78
>gi|322708894|gb|EFZ00471.1| U6 snRNA-associated protein LSm6 [Metarhizium anisopliae ARSEF
23]
Length = 102
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 19/82 (23%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGI-------------------LVSTDGYMNCQLAS 48
+P FL+ + G VI KL G YKG L S DGYMN L
Sbjct: 16 DPSSFLSDIIGNPVIVKLNSGVVYKGEALPETLPQRPVHDAHERRELQSVDGYMNIALEK 75
Query: 49 TEEIIDGHCTGKLGEVLIRCNN 70
TEE I+G G+ +R NN
Sbjct: 76 TEEYINGKKRRDYGDAFVRGNN 97
>gi|301755276|ref|XP_002913498.1| PREDICTED: putative adenosylhomocysteinase 3-like [Ailuropoda
melanoleuca]
Length = 669
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 22 ICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG-KLGEVLIRC 68
+ K K G EYKG LVS DGY++ QLA+TEE + HC LG + C
Sbjct: 1 MVKPKSGMEYKGYLVSVDGYLSMQLANTEEFLVEHCLDISLGISIFNC 48
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M P LN VI +++ E++G L D +MN L+ EE +DG K
Sbjct: 2 MDMVTKLKPLDVLNKSLRSPVIVRIRGAREFRGTLEGYDLHMNLVLSDAEE-LDGDAIVK 60
Query: 61 --LGEVLIRCNNILYIRGAEEGDEEGE 85
+GE+L+R +N++YI + D E +
Sbjct: 61 ELMGEILVRGDNVVYISPTVKKDAEKD 87
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA + I G T K G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNVVLADAQLIEGGEVTKKYGKIVIRGDNVLAISPVE 74
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G +V+ +L+ G +G+L D +MN L T+E+ID + KLG +++R ++I+ I
Sbjct: 14 VGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDENTQNKLGTIVVRGDSIVMI 71
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 14 NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILY 73
+L + VI LK G E +G+L D +MN L EE+ +G K+G +++R +N++Y
Sbjct: 11 QVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEEVENGQVQ-KVGTLIVRGDNVIY 69
Query: 74 I 74
I
Sbjct: 70 I 70
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
G++V+ KLK E +G L S D ++N L EE+ KLG V+IR +N++ I A
Sbjct: 14 GQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELFPDGQARKLGTVIIRGDNVIIISPA 73
Query: 78 EEG 80
G
Sbjct: 74 SNG 76
>gi|159114826|ref|XP_001707637.1| Small nuclear ribonucleoprotein F, putative [Giardia lamblia ATCC
50803]
gi|157435743|gb|EDO79963.1| Small nuclear ribonucleoprotein F, putative [Giardia lamblia ATCC
50803]
Length = 107
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCT-GKLGEVLI 66
P FL GK V+ +LK G EY G L+S D Y N +L + E+ +G C L ++ I
Sbjct: 30 PGRFLAENIGKEVVVRLKDGREYTGTLISYDSYYNLRLKNCIEKSREGKCALSSLKDMFI 89
Query: 67 RCNNI 71
RC ++
Sbjct: 90 RCTSV 94
>gi|367001911|ref|XP_003685690.1| hypothetical protein TPHA_0E01630 [Tetrapisispora phaffii CBS
4417]
gi|357523989|emb|CCE63256.1| hypothetical protein TPHA_0E01630 [Tetrapisispora phaffii CBS
4417]
Length = 81
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS FL+ + GK V KL G Y G L S DG+MN L++T E + + G
Sbjct: 1 MSAETNSVSSQFLSNIIGKPVNVKLYSGMLYNGKLESIDGFMNIALSNTTEHYENNANGM 60
Query: 61 L----GEVLIRCNNILYI 74
L +V +R ++YI
Sbjct: 61 LRRYENDVFLRGTQVMYI 78
>gi|315426676|dbj|BAJ48302.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315428002|dbj|BAJ49591.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485412|dbj|BAJ51066.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 77
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 10 KPFLNLL--TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
KP L+ K V LK Y+G +V DGYMN L E + T +VLIR
Sbjct: 6 KPLTTLMRQINKPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGDSKTAGYPKVLIR 65
Query: 68 CNNILYIRGAEE 79
NNI+YI AE+
Sbjct: 66 GNNIMYIIFAEK 77
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G+ ++ +LK G Y G LVS D +MN L EE+I DG KL E
Sbjct: 3 PLSLLTTAKGQPMLIELKNGDTYNGRLVSADTWMNVNL---EEVICTSRDGDRFWKLKEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N+I Y+R +E
Sbjct: 60 YIRGNSIKYLRIPDE 74
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 10 KPF--LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLI 66
+PF LN + + V+ +LK +G + S D +MN L + EE+ +G KLG +L+
Sbjct: 5 RPFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELDANGELKAKLGTILL 64
Query: 67 RCNNILYI 74
R NI+++
Sbjct: 65 RGGNIIFV 72
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P ++ K V+ LK G E++G L+ D ++N LA I DG + G+++IR
Sbjct: 4 RPLDVIHRSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQDGEEVKRYGKIVIR 63
Query: 68 CNNILYIRGAE 78
+N+L I E
Sbjct: 64 GDNVLAISPVE 74
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK E +G+L S D +MN L+ +EEI KLG ++IR +N++ I
Sbjct: 17 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILI 70
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK E +G+L S D +MN L+ +EEI KLG ++IR +N++ I
Sbjct: 22 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILI 75
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P ++ + V+ LK G E++G L+ D ++N LA + I DG + G++++R
Sbjct: 4 RPLDIIHRSLDRDVLVLLKKGGEFRGKLIGYDIHLNVVLADADYIQDGEVVKRYGKIVVR 63
Query: 68 CNNILYI 74
+N+L I
Sbjct: 64 GDNVLAI 70
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK E +G+L S D +MN L+ +EEI KLG ++IR +N++ I
Sbjct: 20 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILI 73
>gi|298675778|ref|YP_003727528.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298288766|gb|ADI74732.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 74
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P ++ L G V ++K H+ +G+L S D Y+N L + EI +G LG V++R
Sbjct: 3 PNKKVHKLLGSKVQVEMKGDLHQLEGVLESVDDYLNLHLVESVEIANGERLRSLGSVVLR 62
Query: 68 CNNILYIRGAEE 79
NNI+ + E+
Sbjct: 63 GNNIVLLAPVED 74
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 9 PKPFLNL-LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P L+L L + VI LK G E +G+L D +MN L EE +G K+G +++R
Sbjct: 5 PLDILDLVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEETENGQVV-KVGTLIVR 63
Query: 68 CNNILYI 74
+N++YI
Sbjct: 64 GDNVIYI 70
>gi|403215083|emb|CCK69583.1| hypothetical protein KNAG_0C04820 [Kazachstania naganishii CBS
8797]
Length = 84
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL----GEV 64
FL + GK V KL G Y G L S DG+MN L+ST E + G L +V
Sbjct: 12 SSQFLGHIIGKPVHVKLHSGMLYSGTLESIDGFMNVALSSTTEHYENKENGLLHRYQSDV 71
Query: 65 LIRCNNILYI 74
+R +LYI
Sbjct: 72 FLRGTQVLYI 81
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST-EEIIDGHCTGKLGEVLIR 67
P LN G+ ++ +LK G + G L + D YMN L + DG +L E IR
Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62
Query: 68 CNNILYIRGAEE-----GDEEGEMRE 88
NNI Y+R +E ++ + RE
Sbjct: 63 GNNIKYLRIQDEVLSQVAKQQAQQRE 88
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ KLK E +G+L S D +MN L+ +EEI K+G ++IR +N++ I
Sbjct: 14 GSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGSGKKIGTIVIRGDNVILI 70
>gi|336476743|ref|YP_004615884.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM 4017]
gi|335930124|gb|AEH60665.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 102
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + L G + ++K H +G+L S D Y+N L T EI DG LG V++R
Sbjct: 32 PNKKVQKLIGSKIQVEMKGDLHILEGVLKSADDYLNLHLVDTVEISDGERLRSLGSVVLR 91
Query: 68 CNNILYIRGAE 78
NNI+ + E
Sbjct: 92 GNNIILVTPIE 102
>gi|307354786|ref|YP_003895837.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307158019|gb|ADN37399.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 75
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
L K VI LK G E +GIL D +MN L + EE I+G + G +++R +N++YI
Sbjct: 13 LNQKPVIVSLKGGREIRGILQGYDVHMNLVLENAEEEINGVIKNQ-GTLIVRGDNVIYI 70
>gi|298713466|emb|CBJ27021.1| Sm-like protein LSm6 [Ectocarpus siliculosus]
Length = 125
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST 49
+P FL + G+ V+ KL G +Y+G+LV DGYMN + T
Sbjct: 74 SPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
>gi|388583911|gb|EIM24212.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 126
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIR 67
P LN K ++ +LK G + G L++ D YMN L + DG KL E +R
Sbjct: 3 PLTLLNGAQNKPLLVELKSGETFNGHLIACDNYMNLTLKQVFQTNADGERFWKLPECYLR 62
Query: 68 CNNILYIRGAEE 79
N I YIR A+E
Sbjct: 63 GNTIKYIRVADE 74
>gi|73671030|ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri
str. Fusaro]
gi|72398192|gb|AAZ72465.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 74
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
+G L S D YMN L T EI+ G LG V++R NNI+ I EE
Sbjct: 27 EGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNIILITPIEE 74
>gi|223478369|ref|YP_002582798.1| snRNP Sm-like protein [Thermococcus sp. AM4]
gi|240103795|ref|YP_002960104.1| small nuclear ribonucleoprotein [Thermococcus gammatolerans EJ3]
gi|259495715|sp|C5A1H1.1|RUXX_THEGJ RecName: Full=Putative snRNP Sm-like protein
gi|214033595|gb|EEB74422.1| hypothetical snRNP Sm-like protein [Thermococcus sp. AM4]
gi|239911349|gb|ACS34240.1| Small nuclear ribonucleoprotein (snRNP)-like protein, Sm-like
protein [Thermococcus gammatolerans EJ3]
Length = 76
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K V+ LK G E++G L+ D ++N LA + I DG G++++R +N+L I
Sbjct: 15 KDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDGEVVKSYGKIVVRGDNVLAI 70
>gi|340502115|gb|EGR28832.1| lsm6 protein, putative [Ichthyophthirius multifiliis]
Length = 57
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCN 69
G+ V KL G EY G+L + DG MN L EE + K GE+ IR +
Sbjct: 2 GRLVSVKLHNGSEYVGVLATFDGLMNVVLQQAEEFENSELKNKYGEIFIRVS 53
>gi|91772246|ref|YP_564938.1| small ribonucleoprotein [Methanococcoides burtonii DSM 6242]
gi|91711261|gb|ABE51188.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 65
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 16 LTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
+ G V ++K H +G L S D Y+N L T EI DG LG V++R NNI+ I
Sbjct: 1 MIGSKVQVEMKGDQHILEGTLQSADDYLNLHLVDTTEIADGQRLRSLGSVVLRGNNIILI 60
>gi|375082287|ref|ZP_09729353.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
gi|374743044|gb|EHR79416.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
Length = 76
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA + I DG G+++IR +N+L I E
Sbjct: 15 KEVLVILKRGAEFRGRLIGYDIHLNVVLADAQLIEDGEPKKNYGKIVIRGDNVLAISPVE 74
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
G V+ KLK +E +G L S D ++N L EEI + T KLG ++IR + +L I A
Sbjct: 14 GSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYEDGRTRKLGTIVIRGDTVLLISPA 73
Query: 78 E 78
+
Sbjct: 74 Q 74
>gi|288930748|ref|YP_003434808.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288892996|gb|ADC64533.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 74
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYK--GILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
P + L GK V ++K G E G L S D YMN L++ E DG LG++++
Sbjct: 3 PNQMVKSLIGKEVRVEMK-GEESSLVGRLESVDDYMNLHLSNAYEYKDGEKIRVLGDIVL 61
Query: 67 RCNNILYIRGAEE 79
R NNI+ I+ EE
Sbjct: 62 RGNNIVLIQPFEE 74
>gi|156844203|ref|XP_001645165.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
gi|189028754|sp|A7TK72.1|LSM6_VANPO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|156115823|gb|EDO17307.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 83
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
FL + GK V KL G YKG L S DG+MN L++T E + + +L R N
Sbjct: 15 FLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESNA-----HMLKRYEND 69
Query: 72 LYIRGAE 78
+++RG +
Sbjct: 70 VFLRGTQ 76
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G +V+ KLK +G L S D +MN L ++EE++ T K+G ++IR +N++ +
Sbjct: 18 GSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRKVGTIIIRGDNVILV 74
>gi|452819748|gb|EME26801.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Galdieria
sulphuraria]
Length = 110
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G+ V+ +LK G Y G LV+ D +MN L E++ +G K+ E+
Sbjct: 4 PLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNL---REVVWTSREGDRFWKIAEI 60
Query: 65 LIRCNNILYIRGAEE 79
+R N + Y+R EE
Sbjct: 61 YVRGNTVKYLRVPEE 75
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G +V+ KLK +G L S D +MN L ++EEI++ T K+G ++IR +N++ +
Sbjct: 14 GSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMNDGSTRKVGTIVIRGDNVILV 70
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK E +G L S D +MN L+ +EEI KLG ++IR +N++ I
Sbjct: 17 VLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILI 70
>gi|452819749|gb|EME26802.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Galdieria
sulphuraria]
Length = 127
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G+ V+ +LK G Y G LV+ D +MN L E++ +G K+ E+
Sbjct: 4 PLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNL---REVVWTSREGDRFWKIAEI 60
Query: 65 LIRCNNILYIRGAEE 79
+R N + Y+R EE
Sbjct: 61 YVRGNTVKYLRVPEE 75
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 14 NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILY 73
+L + VI LK G E +G+L D +MN L EE I+G + +G +++R +N++Y
Sbjct: 11 QVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVLDKAEE-IEGGQSRSVGTLIVRGDNVIY 69
Query: 74 I 74
I
Sbjct: 70 I 70
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ KLK E +G+L S D +MN L+ +EEI K+G ++IR +N++ I
Sbjct: 17 GNLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGGGKKMGTIVIRGDNVILI 73
>gi|296812049|ref|XP_002846362.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
gi|238841618|gb|EEQ31280.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
Length = 126
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTG 59
M P P LN G ++ +LK G G LV+ D +MN L + +G
Sbjct: 1 MVRAAPALPLGLLNAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFF 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
+L EV +R NNI Y+R EE
Sbjct: 61 RLPEVYVRGNNIKYLRVPEE 80
>gi|21228485|ref|NP_634407.1| small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gi|20906968|gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 33 GILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
G L S D YMN L T EI+ G LG V++R NNI+ I E+
Sbjct: 28 GTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNIILITPVED 74
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ KLK E +G+L S D +MN L+ +EEI K+G ++IR +N++ I
Sbjct: 13 VGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGEGKKMGTIVIRGDNVILI 70
>gi|410080163|ref|XP_003957662.1| hypothetical protein KAFR_0E03760 [Kazachstania africana CBS 2517]
gi|372464248|emb|CCF58527.1| hypothetical protein KAFR_0E03760 [Kazachstania africana CBS 2517]
Length = 124
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
FL+ + GK V KL G Y G+L S DG+MN LA E H K +L + N+
Sbjct: 55 FLSDIIGKPVNVKLHSGMLYTGLLQSIDGFMNVALAQVTE----HYESKENGLLTKYNSD 110
Query: 72 LYIRGAE 78
+++RG +
Sbjct: 111 VFLRGTQ 117
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 20 SVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
SV+ K+K E KGIL S D ++N L EE ++G + LG VL+R +N++ + A
Sbjct: 22 SVLVKMKGNREVKGILTSYDQHLNLILEKAEE-LEGKVSRPLGLVLLRGDNVIAVSPA 78
>gi|145592526|ref|YP_001154528.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005495|ref|YP_005261167.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145284294|gb|ABP51876.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160948|gb|AFA40560.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 86
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-GHCTGKLGEVLI 66
+P L + K ++ KLK G KG+L + DG MN L S E+ + G + G +++
Sbjct: 12 SPIKVLTKMLNKEIVAKLKGGVAIKGVLTAYDGCMNLVLDSAAELDNSGEPKTRYGRIVV 71
Query: 67 RCNNILYIRGAE 78
R + ++Y+ E
Sbjct: 72 RGSQVIYVSALE 83
>gi|444314597|ref|XP_004177956.1| hypothetical protein TBLA_0A06450 [Tetrapisispora blattae CBS
6284]
gi|387510995|emb|CCH58437.1| hypothetical protein TBLA_0A06450 [Tetrapisispora blattae CBS
6284]
Length = 78
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL----GEVLIR 67
FL+ + G+ V KL G Y+G L S DG+MN L++ E + G L EV +R
Sbjct: 9 FLSSIIGRPVSVKLHSGMLYQGKLESIDGFMNVALSNATEHYENSNNGLLHKYPNEVFVR 68
Query: 68 CNNILYI 74
+LYI
Sbjct: 69 GTQVLYI 75
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
K+V+ KLK G E +G L S D ++N L + EE I G T +LG +++R +N++ + A
Sbjct: 15 KNVLVKLKGGREIRGQLKSYDYHLNLVLENAEE-IRGTRTRQLGTIIVRGDNVILVSPA 72
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G +V+ KLK +G L S D +MN L ++EEI++ T K+G ++IR +N++ +
Sbjct: 20 GSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMNDGSTRKVGTIVIRGDNVILV 76
>gi|320100411|ref|YP_004176003.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319752763|gb|ADV64521.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 93
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGKLGEV 64
P +P L G+ ++ ++K G+EY G L DG MN L+ TE +G T + G +
Sbjct: 10 PPSPMKVLKSAEGQIILVRIKGGYEYIGTLDLIDGTMNIVLSDCTEYSSEGKPTSRYGRI 69
Query: 65 LIRCNNILYI 74
+IR +++ +I
Sbjct: 70 IIRGSHVEFI 79
>gi|20090273|ref|NP_616348.1| Sm protein [Methanosarcina acetivorans C2A]
gi|19915270|gb|AAM04828.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 74
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
+G L S D YMN L T EI+ G LG V++R NNI+ I E+
Sbjct: 27 EGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNNIILITPVED 74
>gi|315425168|dbj|BAJ46838.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 66
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V LK Y+G +V DGYMN L E + T +VLIR NNI+YI AE
Sbjct: 6 KPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGDSKTAGYPKVLIRGNNIMYIIFAE 65
Query: 79 E 79
+
Sbjct: 66 K 66
>gi|254167717|ref|ZP_04874567.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
gi|197623245|gb|EDY35810.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
Length = 53
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 25 LKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
+K EY+G+L D ++N L + EEII+G G V++R +N++YI
Sbjct: 1 MKGNKEYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRGDNVIYI 50
>gi|237842601|ref|XP_002370598.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|211968262|gb|EEB03458.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|221502719|gb|EEE28439.1| small nuclear ribonucleoprotein sm, putative [Toxoplasma gondii
VEG]
Length = 214
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA-STEEIIDGHCTGKLGEVLIR 67
P L + ++ +LK G Y G+L S DG+MN L S DG KL E IR
Sbjct: 4 PLTLLRAAQNRPMMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGERFWKLSECYIR 63
Query: 68 CNNILYIRGAEE 79
N + YIR +E
Sbjct: 64 GNMVKYIRLQDE 75
>gi|452210905|ref|YP_007491019.1| snRNP Sm -like protein, Archaeal [Methanosarcina mazei Tuc01]
gi|452100807|gb|AGF97747.1| snRNP Sm -like protein, Archaeal [Methanosarcina mazei Tuc01]
Length = 56
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
+G L S D YMN L T EI+ G LG V++R NNI+ I E+
Sbjct: 9 EGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNIILITPVED 56
>gi|386002990|ref|YP_005921289.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357211046|gb|AET65666.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 65
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
+G L S D Y+N L T EI+DG LG V++R NNI+ I E
Sbjct: 19 EGTLNSVDDYLNLHLQETVEIVDGERARSLGSVILRGNNIILISPVE 65
>gi|308812352|ref|XP_003083483.1| putative Sm protein F (ISS) [Ostreococcus tauri]
gi|116055364|emb|CAL58032.1| putative Sm protein F (ISS) [Ostreococcus tauri]
Length = 173
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 35/99 (35%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYK--------GILVSTDGYMNCQLASTE-------- 50
+P FL + GK+V+ +L G +Y+ G+L DGYMN + TE
Sbjct: 53 VSPSDFLRAIEGKTVLVRLNSGADYRGARSRRSIGVLACLDGYMNIAMEQTEDSTTRARR 112
Query: 51 -------------------EIIDGHCTGKLGEVLIRCNN 70
E ++G K G+ IR NN
Sbjct: 113 VGRARDATRLTMACTLDAQEYVNGQLKNKYGDAFIRGNN 151
>gi|50308123|ref|XP_454062.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636738|sp|Q6CPS7.1|LSM6_KLULA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|49643197|emb|CAG99149.1| KLLA0E02575p [Kluyveromyces lactis]
Length = 80
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL----GEVLIR 67
FL + GK V KL G Y+G L S DG+MN ++ E + G L EV +R
Sbjct: 11 FLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFLR 70
Query: 68 CNNILYI 74
+ +LYI
Sbjct: 71 GSQVLYI 77
>gi|159041439|ref|YP_001540691.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920274|gb|ABW01701.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 86
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI--IDGHCTGKLGE 63
P L ++ KSV+ KLK G G L D MN L EE+ + G+
Sbjct: 9 SVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQVIVRYGK 68
Query: 64 VLIRCNNILYI 74
VLIR N +LY+
Sbjct: 69 VLIRGNQVLYV 79
>gi|395833472|ref|XP_003789756.1| PREDICTED: LOW QUALITY PROTEIN: protein MB21D1 [Otolemur
garnettii]
Length = 718
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
G SV+ K G +Y+G+L TDGY+N L TEE ++G K
Sbjct: 2 GWSVVVKSNSGVDYRGVLARTDGYVNTALEETEEYVNGEVKNK 44
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA I +G + G+++IR +N+L I E
Sbjct: 15 KDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQEGEEVKRYGKIVIRGDNVLAISPVE 74
>gi|392579756|gb|EIW72883.1| hypothetical protein TREMEDRAFT_24586, partial [Tremella
mesenterica DSM 1558]
Length = 104
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIR 67
P LN GK ++ +LK G + G LV D +MN L + DG K+ EV I+
Sbjct: 2 PLTLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEVFIK 61
Query: 68 CNNILYIRGAE 78
N I Y R A+
Sbjct: 62 GNIIKYFRIAD 72
>gi|156936952|ref|YP_001434748.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156565936|gb|ABU81341.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 91
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII--DGHCTGKLGEVL 65
NP +L V+ +LK G+EY G LV TD MN L E+ G K G ++
Sbjct: 14 NPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSPETGEPVAKYGRIM 73
Query: 66 IRCNNILYI 74
IR + +L+I
Sbjct: 74 IRGSYVLFI 82
>gi|363752525|ref|XP_003646479.1| hypothetical protein Ecym_4639 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890114|gb|AET39662.1| hypothetical protein Ecym_4639 [Eremothecium cymbalariae
DBVPG#7215]
Length = 85
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 1 MSTPL----PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGH 56
MST + + FL+ + GK V KL G Y+G L S DG+MN LA E +
Sbjct: 1 MSTTVQDTTATSSATFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVSLAGAMEYYEVE 60
Query: 57 CTGKL----GEVLIRCNNILYI 74
+ + +V +R +LYI
Sbjct: 61 SSSVIHKYESDVFLRGTQVLYI 82
>gi|189028862|sp|Q6FYB6.2|LSM6_CANGA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 79
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL-----GEVLI 66
FL+ + GK V KL G Y G+L S DG+MN L+ T E + H L +V +
Sbjct: 10 FLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYE-HPNNNLLKKYASDVFL 68
Query: 67 RCNNILYIRGA 77
R ++YI A
Sbjct: 69 RGTQVMYISEA 79
>gi|365982027|ref|XP_003667847.1| hypothetical protein NDAI_0A04480 [Naumovozyma dairenensis CBS
421]
gi|343766613|emb|CCD22604.1| hypothetical protein NDAI_0A04480 [Naumovozyma dairenensis CBS
421]
Length = 83
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL----GEVLIR 67
FL+ + GK V KL G Y G L S DG+MN L++T E + G L +V +R
Sbjct: 14 FLSNIIGKPVNVKLYSGMLYNGRLESIDGFMNVALSNTTEHYENSSNGLLKSYNSDVFLR 73
Query: 68 CNNILYI 74
++YI
Sbjct: 74 GTQVMYI 80
>gi|401413718|ref|XP_003886306.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
gi|325120726|emb|CBZ56281.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
Length = 98
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA-STEEIIDGHCTGKLGEVLIR 67
P L + ++ +LK G Y G+L + DG+MN L S DG KL E IR
Sbjct: 4 PLTLLRAAQNRPMMVELKSGETYSGLLANCDGFMNLHLKDSVCTSKDGERFWKLTECYIR 63
Query: 68 CNNILYIRGAEE 79
N + YIR EE
Sbjct: 64 GNMVKYIRLQEE 75
>gi|118431273|ref|YP_874866.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|116062596|dbj|BAF34765.1| putative small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 94
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG--HCTGKLGEV 64
NP +L + KLK G EY G LV+TD MN L E+ D K+G V
Sbjct: 10 VNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRV 69
Query: 65 LIRCNNILYI 74
LI+ + + +I
Sbjct: 70 LIKGSMVEFI 79
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ KLK E +G L S D +MN L+ + EI + + K+G ++IR +N++ I
Sbjct: 13 VGSLVLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEIQNNNDEKKMGTIVIRGDNVILI 70
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST-EEIIDGHCTGKLGEVLIR 67
P LN G+ ++ +LK G + G L D YMN L + + +G ++ E IR
Sbjct: 3 PLTLLNAAQGRPILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKFFRMPECYIR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVQDE 74
>gi|45185890|ref|NP_983606.1| ACR204Cp [Ashbya gossypii ATCC 10895]
gi|74694815|sp|Q75BR7.1|LSM6_ASHGO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|44981680|gb|AAS51430.1| ACR204Cp [Ashbya gossypii ATCC 10895]
gi|374106813|gb|AEY95722.1| FACR204Cp [Ashbya gossypii FDAG1]
Length = 85
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M P + FL+ + GK V KL G Y+G L S DG+MN L E +
Sbjct: 5 MQGPAVTSSSTFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPV 64
Query: 61 L----GEVLIRCNNILYI 74
+ +V +R ++YI
Sbjct: 65 IHRYESDVFLRGTQVMYI 82
>gi|330507733|ref|YP_004384161.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928541|gb|AEB68343.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 56
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
+G+L S D Y+N L T E+I G T LG V++R NNI+ I E
Sbjct: 10 EGVLNSVDEYLNLHLLETVELIGGEKTRSLGSVILRGNNIILISPVE 56
>gi|296241945|ref|YP_003649432.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296094529|gb|ADG90480.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 91
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGKLGEV 64
P +P L G+ V+ K+K G+EY G L D MN +++ TE DG + G++
Sbjct: 8 PQSPFKILKSSEGQIVLVKIKGGYEYVGNLDLIDNTMNVVMSNCTEYSKDGKPVARYGKL 67
Query: 65 LIRCNNILYI 74
+IR ++I YI
Sbjct: 68 IIRGSHIQYI 77
>gi|147919071|ref|YP_687199.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
gi|110622595|emb|CAJ37873.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
Length = 74
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHE-YKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + L G+ V ++K +G LVS D Y+N L T E+ G LG V++R
Sbjct: 3 PNKKVQALIGQKVQVEMKGEKNILEGTLVSADDYLNLHLVDTTEVAAGQKLRTLGSVVLR 62
Query: 68 CNNILYIRGAEE 79
NNI+ + +E
Sbjct: 63 GNNIILLNPIKE 74
>gi|366988705|ref|XP_003674120.1| hypothetical protein NCAS_0A11810 [Naumovozyma castellii CBS
4309]
gi|342299983|emb|CCC67739.1| hypothetical protein NCAS_0A11810 [Naumovozyma castellii CBS
4309]
Length = 83
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL----GEVLIR 67
FL+ + GK V KL G Y G L S DG+MN L+S E + G L +V +R
Sbjct: 14 FLSNIIGKPVNVKLYSGMLYNGRLESIDGFMNVALSSATEHYENASNGLLRTYNSDVFLR 73
Query: 68 CNNILYI 74
++YI
Sbjct: 74 GTQVMYI 80
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA-STEEIIDGHCTGKLGEVLIR 67
P L G+ ++ +LK G Y G+L + D +MN + + DG KL E IR
Sbjct: 4 PMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIR 63
Query: 68 CNNILYIR 75
N++ Y+R
Sbjct: 64 GNHVKYLR 71
>gi|82617313|emb|CAI64218.1| small nuclear riboprotein-like protein [uncultured archaeon]
Length = 73
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 9 PKPFLNLLTGKSVICKLKW-GHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + + G V ++K H +G L S D Y+N + T EI DG LG V++R
Sbjct: 3 PTKKVQSMIGSRVQVEMKGDAHILEGELESVDDYLNLHMLDTVEIADGERLRSLGSVVLR 62
Query: 68 CNNILYIRGAE 78
NNI+ I E
Sbjct: 63 GNNIILIVPVE 73
>gi|378756222|gb|EHY66247.1| hypothetical protein NERG_00943 [Nematocida sp. 1 ERTm2]
Length = 69
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
FL L GK V ++ G+ YKGIL D MN L + I+D C +VLIRC+N
Sbjct: 8 SFLPSLAGKRVAVRISTGYIYKGILAGYDDRMNVLL--KKCILDAVCN----KVLIRCSN 61
Query: 71 ILYI 74
I+ I
Sbjct: 62 IVSI 65
>gi|345560998|gb|EGX44114.1| hypothetical protein AOL_s00210g95 [Arthrobotrys oligospora ATCC
24927]
Length = 145
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L + G ++ +LK G G LVS D +MN L +E+I DG +L E
Sbjct: 3 PLTLLTTVQGHPLLVELKNGETLNGHLVSCDTWMNLTL---KEVIQTSPDGETFHRLPEA 59
Query: 65 LIRCNNILYIRGAEE 79
+R NNI Y+R +E
Sbjct: 60 YVRGNNIKYLRVPDE 74
>gi|48477742|ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
gi|48430390|gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 82
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K+++ +K Y G L D YMN L++ E I+G G ++L+R +NI+++
Sbjct: 21 KNIMVDVKGNRTYSGTLEGYDIYMNVVLSNVSETINGENKGVFEKMLVRGDNIIFV 76
>gi|302309610|ref|XP_002999513.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049225|emb|CAR57997.1| unnamed protein product [Candida glabrata]
Length = 115
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL-----GEVLI 66
FL+ + GK V KL G Y G+L S DG+MN L+ T E + H L +V +
Sbjct: 46 FLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYE-HPNNNLLKKYASDVFL 104
Query: 67 RCNNILYIRGA 77
R ++YI A
Sbjct: 105 RGTQVMYISEA 115
>gi|18312096|ref|NP_558763.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159526|gb|AAL62945.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 85
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLI 66
+P L + K +I +LK G KG+L + DG MN L E+ G + G ++I
Sbjct: 11 SPIKVLTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVI 70
Query: 67 RCNNILYIRGAE 78
R + ++Y+ +E
Sbjct: 71 RGSQVIYVSTSE 82
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 20 SVICKLKWGHEYKGILVSTDGYMNCQL---ASTEEIIDGHCTGKLGEVLIRCNNILYIR 75
S++ +LK G Y G+L+ DG+MN L ST + DG ++ E +R NNI YIR
Sbjct: 15 SIMVELKNGETYSGMLIGVDGFMNLVLNNVISTSK--DGQRFFRMSECYLRGNNIKYIR 71
>gi|410669462|ref|YP_006921833.1| small ribonucleoprotein [Methanolobus psychrophilus R15]
gi|409168590|gb|AFV22465.1| small ribonucleoprotein [Methanolobus psychrophilus R15]
Length = 56
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 29 HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
H +G L S D YMN L T EI +G LG V++R NNI+ +
Sbjct: 6 HLLEGTLSSADDYMNLHLVDTVEIANGERLRSLGSVVLRGNNIILV 51
>gi|390981143|pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
gi|390981144|pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
gi|390981145|pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
gi|390981146|pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
gi|390981147|pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
gi|390981148|pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
gi|390981149|pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
gi|390981150|pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
gi|390981151|pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
gi|390981152|pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
gi|390981153|pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
gi|390981154|pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
gi|390981155|pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
gi|390981156|pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
gi|390981157|pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
gi|390981158|pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
gi|390981159|pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
gi|390981160|pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
gi|390981161|pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
gi|390981162|pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
gi|390981163|pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
gi|390981164|pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
gi|390981165|pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
gi|390981166|pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKL 61
P P LN G+ ++ +LK G + G L + D Y N L E+I DG +L
Sbjct: 14 PXLPLTLLNATQGRPILVELKNGETFNGHLENCDNYXNLTL---REVIRTXPDGDKFFRL 70
Query: 62 GEVLIRCNNILYIRGAEE-----GDEEGEMRE 88
E IR NNI Y+R +E ++ + RE
Sbjct: 71 PECYIRGNNIKYLRIQDEVLSQVAKQQAQQRE 102
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P L VI +LK G +G LVS DG++N L E ID +LG VLIR
Sbjct: 2 RPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVE-IDEDSEVRLGRVLIR 60
Query: 68 CNNILYIRGAEEG 80
+++ I AE G
Sbjct: 61 GDSVTLISPAEVG 73
>gi|170291026|ref|YP_001737842.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175106|gb|ACB08159.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 80
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 20 SVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE-VLIRCNNILYI--RG 76
SV+ LK G +GIL S D ++N L + EEI++G+ KLG+ VLIR +N++ I +
Sbjct: 15 SVLVILKNGVYVRGILKSYDNHLNLILDNAEEIMEGNAK-KLGKRVLIRGDNVIAISTQK 73
Query: 77 AEEGDEE 83
E G+EE
Sbjct: 74 IEIGEEE 80
>gi|386875165|ref|ZP_10117354.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807044|gb|EIJ66474.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 79
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ +L+ +G L+ D +MN L + E+I +G T KLG++L+R +NIL + E
Sbjct: 18 KVVLLRLRNTKTVQGTLIDFDIHMNLTLDNAEDISEGK-TEKLGKILLRGDNILAVSLPE 76
Query: 79 E 79
+
Sbjct: 77 D 77
>gi|315051216|ref|XP_003174982.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
gi|311340297|gb|EFQ99499.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
Length = 124
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 6 PLGLLNAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVR 65
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 66 GNNIKYLRVPEE 77
>gi|383320207|ref|YP_005381048.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379321577|gb|AFD00530.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 74
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHE-YKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + L G+ + ++K +G LVS D Y+N L T EI G LG V++R
Sbjct: 3 PNKKVQSLIGQKIQVEMKGEKNILEGTLVSADDYLNLHLVDTAEIQGGQKLRTLGSVVLR 62
Query: 68 CNNILYIRGAEE 79
NNI+ + +E
Sbjct: 63 GNNIILLNPVKE 74
>gi|346325131|gb|EGX94728.1| U6 snRNA-associated Sm-like protein LSM4, putative [Cordyceps
militaris CM01]
Length = 163
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LV+ D +MN L + +G +L EV ++
Sbjct: 38 PLGLLNAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLTQVVQTSPEGDKFMRLKEVYVK 97
Query: 68 CNNILYIRGAEE 79
NNI Y+R AEE
Sbjct: 98 GNNIKYLRVAEE 109
>gi|257076591|ref|ZP_05570952.1| small nuclear ribonucleoprotein [Ferroplasma acidarmanus fer1]
Length = 84
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 9 PKPFLNLLTG--KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
PKP L K+++ +K Y GIL D YMN L + E I+ G +L+
Sbjct: 11 PKPMETLKNSLEKNIMIDVKGNRMYSGILEGYDIYMNLVLKNATETINNENKGTFSMMLL 70
Query: 67 RCNNILYI 74
R +NI+++
Sbjct: 71 RGDNIIFV 78
>gi|254585029|ref|XP_002498082.1| ZYRO0G01804p [Zygosaccharomyces rouxii]
gi|238940976|emb|CAR29149.1| ZYRO0G01804p [Zygosaccharomyces rouxii]
Length = 115
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL- 61
T + FL+ + G++V KL G Y+G L S DG+MN L+S +E + G L
Sbjct: 36 TMAKIDSSQFLSTIIGQNVHVKLHSGMLYRGRLESIDGFMNVALSSAKEHYETGENGLLR 95
Query: 62 ---GEVLIRCNNILYI 74
+V +R ++YI
Sbjct: 96 TYPTDVFLRGTQVMYI 111
>gi|301108303|ref|XP_002903233.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
gi|262097605|gb|EEY55657.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
Length = 82
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG K+ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNL---REVICTSKDGDRFWKMPEC 59
Query: 65 LIRCNNILYIRGAEEGDEEGEMR 87
IR N I YIR E + + + R
Sbjct: 60 YIRGNTIKYIRVPNEVNSQRQRR 82
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA-STEEIIDGHCTGKLGEVLIR 67
P L G+ ++ +LK G Y G+L + D +MN + + DG KL E IR
Sbjct: 4 PMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIR 63
Query: 68 CNNILYIR 75
N+I Y+R
Sbjct: 64 GNHIKYLR 71
>gi|340344218|ref|ZP_08667350.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519359|gb|EGP93082.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 76
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K ++ +L+ +G L D +MN L E+I DG T KLG++L+R +NIL + +
Sbjct: 15 KVILLRLRNNKSVRGNLQDFDVHMNLTLEDAEDISDGK-TVKLGKILLRGDNILAVSLPD 73
Query: 79 E 79
E
Sbjct: 74 E 74
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA-STEEIIDGHCTGKLGEVLIR 67
P L G+ ++ +LK G Y G+L + D +MN + + DG KL E IR
Sbjct: 4 PMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIR 63
Query: 68 CNNILYIR 75
N+I Y+R
Sbjct: 64 GNHIKYLR 71
>gi|347522706|ref|YP_004780276.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459588|gb|AEM38024.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 92
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P +P L + ++ KLK G EY G L TDG MN L+ E+ K
Sbjct: 1 MSQQRPASPLRVLREARNRVILVKLKDGSEYIGKLELTDGTMNLILSDCVEVDSETMEPK 60
Query: 61 L--GEVLIRCNNILYI 74
+ G VLIR + ++++
Sbjct: 61 VKYGRVLIRGSMVVFV 76
>gi|328774253|gb|EGF84290.1| hypothetical protein BATDEDRAFT_85018 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P LN G ++ +LK G + G LV+ D YMN L E+I DG K+ E+
Sbjct: 3 PLSLLNKAQGHPMLIELKNGDTFNGHLVNCDPYMNVNL---REVIRTSADGEKFWKIPEI 59
Query: 65 LIRCNNILYIRGAEE 79
IR + I Y+R +E
Sbjct: 60 YIRGSTIKYLRVPDE 74
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ KLK E +G L S D ++N L EEI + T KLG ++IR + ++ I
Sbjct: 14 GDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIRENGSTRKLGTIVIRGDTVILI 70
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K V+ KLK G +G L+ D +MN L S+EEI T LG +++R +N++ I
Sbjct: 16 KVVLIKLKGGKAIRGNLLGFDQHMNLLLESSEEIPVEGETRTLGTIVVRGDNVVII 71
>gi|268324345|emb|CBH37933.1| conserved hypothetical protein, containing LSM domain [uncultured
archaeon]
Length = 74
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
+GIL S D Y+N L+S EI +G LG V++R NN++ I +E
Sbjct: 27 EGILTSVDDYLNLHLSSASEIQNGVRKRLLGSVILRGNNVVLINPMKE 74
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ KLK E +G L S D ++N L EEI + T KLG ++IR + ++ I
Sbjct: 14 GDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIKEDGSTRKLGTIVIRGDTVILI 70
>gi|307594229|ref|YP_003900546.1| Sm ribonucleoprotein core-like protein [Vulcanisaeta distributa
DSM 14429]
gi|307549430|gb|ADN49495.1| Sm ribonucleoprotein core-like protein [Vulcanisaeta distributa
DSM 14429]
Length = 81
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG--HCTGKLGE 63
P P L L GK V +LK +GILV+ D MN + EE+ + K G
Sbjct: 4 PQQPMKTLQKLVGKHVTIRLKNNKVLRGILVNYDDCMNLIIDEGEELDQKGENVVVKYGR 63
Query: 64 VLIRCNNILYIRGAE 78
++IR ILYI E
Sbjct: 64 LVIRGTQILYITSEE 78
>gi|282164085|ref|YP_003356470.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282156399|dbj|BAI61487.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 74
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHE-YKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + L G+ + ++K +G LVS D Y+N + T EI G LG V++R
Sbjct: 3 PNKKVQALVGQKIQVEMKGEKNILEGTLVSADDYLNLHMVDTTEIQGGQKLRTLGSVVLR 62
Query: 68 CNNILYIRGAEE 79
NNI+ + +E
Sbjct: 63 GNNIILLNPLKE 74
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ K K +G L S D ++N L EEI+ T KLG V+IR + ++ I
Sbjct: 14 GKQVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTVVIRGDTVVLI 70
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LVS D YMN L + DG +L E +R
Sbjct: 3 PLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|390937928|ref|YP_006401666.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
gi|390191035|gb|AFL66091.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
Length = 93
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGKLGEV 64
P +P L G+ V+ ++K G EY G L D MN L+ TE DG T + G++
Sbjct: 10 PPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYSGDGRPTSRYGKI 69
Query: 65 LIRCNNILYI 74
+IR +++ +I
Sbjct: 70 IIRGSHVEFI 79
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ K+K +G L S D ++N L EEI +G T KLG V+IR + +++I
Sbjct: 14 GNIVLIKIKDDITLRGKLRSYDQHLNIVLDDVEEIGEGGSTRKLGTVVIRGDTVVFI 70
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K+V+ KLK +G L+ D +MN L EEI+ + LG +++R +N++ I
Sbjct: 16 KTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSDGDSNSLGSLVVRGDNVVMI 71
>gi|432331010|ref|YP_007249153.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432137719|gb|AGB02646.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 78
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 28 GHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G + +G LV+ D Y+N + T E +D LG V+IR NNIL I
Sbjct: 28 GRKLQGRLVAVDEYLNIHMDETIEYVDNQRGRSLGTVVIRGNNILTI 74
>gi|327311719|ref|YP_004338616.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
gi|326948198|gb|AEA13304.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
Length = 86
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGE 63
LP +P L+ + K V+ +LK +GIL D MN L EE+ +G K G
Sbjct: 10 LP-SPLKVLSKMVNKVVVARLKGDVVVRGILSIYDSCMNLVLDEAEELDKNGATKMKYGR 68
Query: 64 VLIRCNNILYIRGAEEG 80
+LIR + I+YI E
Sbjct: 69 ILIRGSQIIYISSEEAA 85
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG--- 59
+PLP + LN G ++ +LK G G LV+ D +MN L +E++ G
Sbjct: 115 SPLPLS---LLNTAQGHPMLVELKNGETLNGHLVNCDTWMNLTL---KEVVQTSPEGDKF 168
Query: 60 -KLGEVLIRCNNILYIRGAEE 79
+L E +R NNI Y+R +E
Sbjct: 169 FRLAECYVRGNNIKYLRVPDE 189
>gi|52548448|gb|AAU82297.1| small nuclear riboprotein-like protein [uncultured archaeon
GZfos13E1]
Length = 74
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEY-KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + L G+ V ++K +G+L S D Y+N L+ E+ +G LG V++R
Sbjct: 3 PNKRVQSLVGRMVHVEMKGERSVLEGVLTSVDDYLNLHLSGANELENGERRRLLGSVVVR 62
Query: 68 CNNILYI 74
NN++ I
Sbjct: 63 GNNVVLI 69
>gi|357458899|ref|XP_003599730.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|357474717|ref|XP_003607643.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|358345437|ref|XP_003636784.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355488778|gb|AES69981.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355502719|gb|AES83922.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355508698|gb|AES89840.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
Length = 196
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 32 KGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
+ IL DGYMN + TEE ++G K G+ IR NN
Sbjct: 132 ESILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 170
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 14 NLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG-HCTGKLGEVLIRCNNIL 72
+L + VI LK G E +G+L D +MN L EE +G + T LG +++R +N++
Sbjct: 11 QVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEE--EGENGTVSLGTLIVRGDNVI 68
Query: 73 YIRGAEE 79
YI + E
Sbjct: 69 YISPSVE 75
>gi|218883408|ref|YP_002427790.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
gi|218765024|gb|ACL10423.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGKLGEV 64
P +P L G+ V+ ++K G EY G L D MN L+ TE DG T + G++
Sbjct: 10 PPSPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDGRPTSRYGKI 69
Query: 65 LIRCNNILYI 74
+IR +++ +I
Sbjct: 70 IIRGSHVEFI 79
>gi|154151155|ref|YP_001404773.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153999707|gb|ABS56130.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 78
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 16 LTGKSVICKLK-WGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
L +I ++K G + +G LV+ D Y+N + T E ++ LG V+IR NNIL I
Sbjct: 15 LVDSKIIVEIKDEGRKLQGRLVAVDEYLNIHMDETIEFVNNERGRSLGTVVIRGNNILTI 74
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK G +G L+ D +MN L S+EEI + LG +++R +N++ I
Sbjct: 18 VLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPTEGNSKSLGTIVVRGDNVVMI 71
>gi|323334029|gb|EGA75414.1| Lsm6p [Saccharomyces cerevisiae AWRI796]
Length = 131
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG----HCTGKLGEVLIR 67
FL+ + GK+V KL G Y G L S DG+MN L+S E + +V +R
Sbjct: 52 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLR 111
Query: 68 CNNILYI 74
++YI
Sbjct: 112 GTQVMYI 118
>gi|325968481|ref|YP_004244673.1| Like-Sm ribonucleoprotein, core [Vulcanisaeta moutnovskia 768-28]
gi|323707684|gb|ADY01171.1| Like-Sm ribonucleoprotein, core [Vulcanisaeta moutnovskia 768-28]
Length = 81
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG--HCTGKLGE 63
P P L L GK V +LK +G+LV+ D MN + EE+ + K G
Sbjct: 4 PQQPMKTLQKLVGKHVTIRLKNNKVLRGVLVNYDDCMNLIIDEGEELDQKGENVVVKYGR 63
Query: 64 VLIRCNNILYIRGAE 78
++IR +LYI E
Sbjct: 64 LVIRGTQVLYITSEE 78
>gi|189197851|ref|XP_001935263.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187981211|gb|EDU47837.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIR 67
P L TG ++ +LK G G+LV+ D +MN L + DG KL E+ +R
Sbjct: 3 PLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMKLPEIYVR 62
Query: 68 CNNILYIRGAEE 79
+ I Y+R +E
Sbjct: 63 GSTIKYLRVPDE 74
>gi|386875950|ref|ZP_10118098.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
gi|386806240|gb|EIJ65711.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
Length = 46
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 37 STDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIR 75
+ D YMN + EE+ DG G V++R NN+L+I+
Sbjct: 3 NVDSYMNLIMTDAEELHDGKTIANYGRVIVRGNNVLFIK 41
>gi|242809941|ref|XP_002485479.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716104|gb|EED15526.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 118
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|255946281|ref|XP_002563908.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588643|emb|CAP86759.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 13 LNLLT---GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRC 68
L LLT G ++ +LK G G LV+ D +MN L + +G +L EV IR
Sbjct: 4 LGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYIRG 63
Query: 69 NNILYIRGAEE 79
NNI Y+R EE
Sbjct: 64 NNIKYLRVPEE 74
>gi|849199|gb|AAB64814.1| Ydr378cp [Saccharomyces cerevisiae]
gi|259145616|emb|CAY78880.1| Lsm6p [Saccharomyces cerevisiae EC1118]
gi|323338113|gb|EGA79347.1| Lsm6p [Saccharomyces cerevisiae Vin13]
gi|323349129|gb|EGA83360.1| Lsm6p [Saccharomyces cerevisiae Lalvin QA23]
gi|365766176|gb|EHN07675.1| Lsm6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392300496|gb|EIW11587.1| Lsm6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 123
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG----HCTGKLGEVLIR 67
FL+ + GK+V KL G Y G L S DG+MN L+S E + +V +R
Sbjct: 52 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLR 111
Query: 68 CNNILYI 74
++YI
Sbjct: 112 GTQVMYI 118
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 1 MSTPLPCN-PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS +P + L G+ V+ KL+ G +G L S D ++N L EE +
Sbjct: 1 MSQHIPTDTAHKILAESLGQMVLIKLRGGKSVRGKLRSYDLHLNIVLDDAEEELSDGSWR 60
Query: 60 KLGEVLIRCNNILYI 74
KLG VLIR N++ I
Sbjct: 61 KLGTVLIRGENVVVI 75
>gi|425765914|gb|EKV04555.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum PHI26]
gi|425779249|gb|EKV17325.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum Pd1]
Length = 121
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV IR
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYIR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
N +N SV KLK G KG+L S D ++N L + EE+ + + LG VL+
Sbjct: 8 TNTFKVMNEYLNASVYVKLKGGEGVKGVLKSFDQHLNLVLENAEELTE-RGSRSLGTVLV 66
Query: 67 RCNNILYI 74
R ++I+ I
Sbjct: 67 RGDSIVAI 74
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L+ G ++ +LK G G LVS D YMN L + +G +L E +R
Sbjct: 3 PLGLLHAAQGHPMLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|328862497|gb|EGG11598.1| hypothetical protein MELLADRAFT_31042 [Melampsora larici-populina
98AG31]
Length = 108
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTE-EIIDGHCTGKLGEVLIR 67
P L+ GK ++ +LK G + G L+ +D +MN + DG KL E IR
Sbjct: 2 PLALLHGAQGKPMLVELKNGETFNGHLIQSDNFMNLTMREVYLTSSDGEKFWKLSECYIR 61
Query: 68 CNNILYIR 75
N I YIR
Sbjct: 62 GNTIKYIR 69
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ K K +G L S D ++N L EEI+ T KLG ++IR + ++ I
Sbjct: 14 GKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTIVIRGDTVVLI 70
>gi|268834043|ref|NP_001161373.1| small nuclear ribonucleoprotein polypeptide G isoform 1 [Danio
rerio]
gi|268834149|ref|NP_001004660.2| small nuclear ribonucleoprotein polypeptide G isoform 2 [Danio
rerio]
Length = 76
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + T E+ G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNT 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D YMN L + DG +L E +R
Sbjct: 3 PLGLLTAAQGHPMLVELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|327401554|ref|YP_004342393.1| Sm ribonucleoprotein-like protein [Archaeoglobus veneficus SNP6]
gi|327317062|gb|AEA47678.1| Like-Sm ribonucleoprotein core [Archaeoglobus veneficus SNP6]
Length = 74
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYK--GILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
P + L GK++ ++K G E G L S D YMN +++ E +G LG +++
Sbjct: 3 PNQMVRSLVGKTIRVEMK-GEESDLVGRLESVDDYMNIYMSNAVEYKNGEKLRNLGNLVL 61
Query: 67 RCNNILYIRGAEE 79
R NN++ I+ EE
Sbjct: 62 RGNNVILIQPFEE 74
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LVS D YMN L + +G +L E +R
Sbjct: 3 PLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|352682842|ref|YP_004893366.1| hypothetical protein TTX_1667 [Thermoproteus tenax Kra 1]
gi|350275641|emb|CCC82288.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Thermoproteus tenax Kra 1]
Length = 86
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-GHCTGKLGE 63
LP +P L+ + K V+ +LK +G+L D MN L + EE+ G+ + G
Sbjct: 10 LP-SPLKVLSKMVNKVVVARLKGDVVVRGVLSIYDSCMNLVLDNAEELDKVGNAKMRYGR 68
Query: 64 VLIRCNNILYIRGAEEG 80
+LIR + I+YI E
Sbjct: 69 ILIRGSQIIYISSEEAA 85
>gi|258597219|ref|XP_001347757.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
gi|254832602|gb|AAN35670.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L + V+ +LK G Y G LV D +MN + + II DG K+ E
Sbjct: 4 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKN---IICTSKDGDKFWKISEC 60
Query: 65 LIRCNNILYIRGAEEGDEEG 84
+R N+I YIR ++ E+
Sbjct: 61 YVRGNSIKYIRVQDQAIEQA 80
>gi|300175666|emb|CBK20977.2| unnamed protein product [Blastocystis hominis]
Length = 108
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGKLGEVLIR 67
P L+ G +VI +L G +Y+G LV + MNCQL + T DG + KL V IR
Sbjct: 6 PIKLLHEGEGNTVIVELTNGEKYRGHLVRAEDNMNCQLTNVTMRARDGKLS-KLENVYIR 64
Query: 68 CNNILYI 74
+ + Y+
Sbjct: 65 GSRVRYV 71
>gi|355700149|gb|AES01356.1| LSM4-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 153
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 2 STPLPCN---PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----D 54
++PLP + P L ++ +LK G Y G LVS D +MN L E+I D
Sbjct: 8 ASPLPADNMLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL---REVICTSRD 64
Query: 55 GHCTGKLGEVLIRCNNILYIRGAEE 79
G ++ E IR + I Y+R +E
Sbjct: 65 GDKFWRMPECYIRGSTIKYLRIPDE 89
>gi|51858986|gb|AAH81512.1| Zgc:103688 [Danio rerio]
gi|182890240|gb|AAI65520.1| Zgc:103688 protein [Danio rerio]
Length = 76
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + T E+ G
Sbjct: 1 MSEAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNT 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|319401867|ref|NP_001187842.1| small nuclear ribonucleoprotein g [Ictalurus punctatus]
gi|308324118|gb|ADO29194.1| small nuclear ribonucleoprotein g [Ictalurus punctatus]
Length = 76
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + + EI G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVVDDSIEISAGGQQNS 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|212537193|ref|XP_002148752.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068494|gb|EEA22585.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
Length = 170
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 55 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVR 114
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 115 GNNIKYLRVPEE 126
>gi|301108373|ref|XP_002903268.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
gi|262097640|gb|EEY55692.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
Length = 79
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG K+ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNL---REVICTSKDGDRFWKMPEC 59
Query: 65 LIRCNNILYIRGAEEGDEE 83
IR N I YIR E + +
Sbjct: 60 YIRGNTIKYIRVPNEVNSQ 78
>gi|325968287|ref|YP_004244479.1| Sm ribonucleoprotein-like protein [Vulcanisaeta moutnovskia
768-28]
gi|323707490|gb|ADY00977.1| Like-Sm ribonucleoprotein core [Vulcanisaeta moutnovskia 768-28]
Length = 72
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K ++ KL+ G E +G+LV D ++N L +TEE I+ K G ++IR + +L+I
Sbjct: 14 KVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEE-INPKGGVKSGLMIIRGDTVLFI 68
>gi|145549786|ref|XP_001460572.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428402|emb|CAK93175.1| unnamed protein product [Paramecium tetraurelia]
Length = 128
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 11 PFLNLLTGK--SVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LLT K V+ ++K G Y G L D +MN +L + + DG+ + E+LI+
Sbjct: 6 PLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNAKLTNVKHTSKDGNSFHGIKELLIK 65
Query: 68 CNNILYIR 75
N+I Y R
Sbjct: 66 GNSIKYFR 73
>gi|326470583|gb|EGD94592.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326484638|gb|EGE08648.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 121
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|82795247|ref|NP_010666.2| Lsm6p [Saccharomyces cerevisiae S288c]
gi|189028755|sp|A6ZYX7.1|LSM6_YEAS7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|189047098|sp|Q06406.2|LSM6_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|151942351|gb|EDN60707.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190404686|gb|EDV07953.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|285811396|tpg|DAA12220.1| TPA: Lsm6p [Saccharomyces cerevisiae S288c]
Length = 86
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG----HCTGKLGEVLIR 67
FL+ + GK+V KL G Y G L S DG+MN L+S E + +V +R
Sbjct: 15 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLR 74
Query: 68 CNNILYI 74
++YI
Sbjct: 75 GTQVMYI 81
>gi|327304028|ref|XP_003236706.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326462048|gb|EGD87501.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 121
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|302881905|ref|XP_003039863.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
gi|256720730|gb|EEU34150.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
Length = 125
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LVS D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLREVVQTSPEGDKFVRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK G +G L+ D +MN L S+EEI + LG +++R +N++ I
Sbjct: 18 VLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPVEGNSKSLGTIVVRGDNVVMI 71
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
GK V+ KLK G +G L D +MN L + EI++ + LG +++R +N++ I
Sbjct: 15 GKVVLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEILEEGKSNDLGTIVVRGDNVVII 71
>gi|323305462|gb|EGA59206.1| Lsm6p [Saccharomyces cerevisiae FostersB]
gi|323355542|gb|EGA87363.1| Lsm6p [Saccharomyces cerevisiae VL3]
Length = 123
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG----HCTGKLGEVLIR 67
FL+ + GK+V KL G Y G L S DG+MN L+S E + +V +R
Sbjct: 52 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNNDVFLR 111
Query: 68 CNNILYI 74
++YI
Sbjct: 112 GTQVMYI 118
>gi|46121885|ref|XP_385496.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1]
Length = 154
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LVS D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA----STEEIIDGHCTGKLGEV 64
P L G ++ +LK G Y G LVS D +MN L +++ DG ++ E
Sbjct: 3 PLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPEC 62
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 63 YIRGNTIKYLRVPDE 77
>gi|452001361|gb|EMD93821.1| hypothetical protein COCHEDRAFT_1154389 [Cochliobolus
heterostrophus C5]
Length = 134
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIR 67
P L TG ++ +LK G G+LV+ D +MN L + DG +L E+ +R
Sbjct: 3 PLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVR 62
Query: 68 CNNILYIRGAEE 79
+ I Y+R +E
Sbjct: 63 GSTIKYLRVPDE 74
>gi|451849184|gb|EMD62488.1| hypothetical protein COCSADRAFT_221383 [Cochliobolus sativus
ND90Pr]
Length = 141
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIR 67
P L TG ++ +LK G G+LV+ D +MN L + DG +L E+ +R
Sbjct: 3 PLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVR 62
Query: 68 CNNILYIRGAEE 79
+ I Y+R +E
Sbjct: 63 GSTIKYLRVPDE 74
>gi|408393268|gb|EKJ72533.1| hypothetical protein FPSE_07170 [Fusarium pseudograminearum
CS3096]
Length = 139
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LVS D +MN L + +G +L EV ++
Sbjct: 18 PLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVK 77
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 78 GNNIKYLRVPDE 89
>gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]
Length = 153
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG K+ E
Sbjct: 5 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNL---REVICTSKDGDRFWKMPEC 61
Query: 65 LIRCNNILYIRGAEE 79
IR N I YIR E
Sbjct: 62 YIRGNTIKYIRVPNE 76
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQL----ASTEEIIDGHCTGKLGEV 64
P L G ++ +LK G Y G LVS D +MN L +++ DG ++ E
Sbjct: 3 PLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPEC 62
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 63 YIRGNTIKYLRVPDE 77
>gi|347837957|emb|CCD52529.1| hypothetical protein [Botryotinia fuckeliana]
Length = 122
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LVS D +MN L + DG +L E+ ++
Sbjct: 4 PLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVK 63
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 64 GNNIKYLRMPDE 75
>gi|225684632|gb|EEH22916.1| U6 snRNP-associated protein Lsm4 [Paracoccidioides brasiliensis
Pb03]
gi|226286829|gb|EEH42342.1| small nuclear ribonucleoprotein [Paracoccidioides brasiliensis
Pb18]
Length = 124
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|67540086|ref|XP_663817.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
gi|40738809|gb|EAA57999.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
Length = 775
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG----KLG 62
C P L G ++ +LK G G L + D +MN L E++ G KL
Sbjct: 11 CLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLIL---REVVQTSPEGDRFFKLP 67
Query: 63 EVLIRCNNILYIRGAEE 79
EV +R NNI Y+R EE
Sbjct: 68 EVYVRGNNIKYLRIPEE 84
>gi|308321244|gb|ADO27774.1| small nuclear ribonucleoprotein g [Ictalurus furcatus]
Length = 76
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + + EI G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVVDDSIEISAGGQQNP 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|295674033|ref|XP_002797562.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280212|gb|EEH35778.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 124
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|410930990|ref|XP_003978880.1| PREDICTED: small nuclear ribonucleoprotein G-like [Takifugu
rubripes]
gi|47207638|emb|CAF90891.1| unnamed protein product [Tetraodon nigroviridis]
Length = 76
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + T E+ G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVVDETLEMGPGGQQSS 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|145510436|ref|XP_001441151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408390|emb|CAK73754.1| unnamed protein product [Paramecium tetraurelia]
Length = 128
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 11 PFLNLLTGK--SVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LLT K V+ ++K G Y G L D +MN +L + + DG+ + E+LI+
Sbjct: 6 PLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNVKLTNVKHTSKDGNSFHGIKELLIK 65
Query: 68 CNNILYIR 75
N+I Y R
Sbjct: 66 GNSIKYFR 73
>gi|284413738|ref|NP_001165121.1| small nuclear ribonucleoprotein polypeptide G [Xenopus laevis]
gi|114107958|gb|AAI23340.1| MGC154809 protein [Xenopus laevis]
Length = 76
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + K+ G + +GIL D +MN L + EI
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKINGGRQVQGILRGFDPFMNLVLDESTEISGSGNQNS 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|367013088|ref|XP_003681044.1| hypothetical protein TDEL_0D02490 [Torulaspora delbrueckii]
gi|359748704|emb|CCE91833.1| hypothetical protein TDEL_0D02490 [Torulaspora delbrueckii]
Length = 82
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGKL----GE 63
FL+ + GK V KL G Y G L S DG+MN L+ TE +GH G L +
Sbjct: 10 SSQFLSEIIGKPVNVKLHSGMLYSGRLESIDGFMNVALSKVTEHYENGH-NGLLRNYNTD 68
Query: 64 VLIRCNNILYI 74
V +R ++YI
Sbjct: 69 VFLRGTQVMYI 79
>gi|384254045|gb|EIE27519.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 117
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 11 PFLNLLTGKS--VICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L L T + V+ +LK G Y G +V D +MN L E+I DG ++ E
Sbjct: 3 PLLLLKTAQKHPVLVELKNGETYNGHMVQCDSWMNVHL---REVICTSKDGDRFWRIPET 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|156034609|ref|XP_001585723.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980]
gi|154698643|gb|EDN98381.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 122
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LVS D +MN L + DG +L E+ ++
Sbjct: 4 PLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVK 63
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 64 GNNIKYLRMPDE 75
>gi|307596528|ref|YP_003902845.1| Sm ribonucleoprotein-like protein [Vulcanisaeta distributa DSM
14429]
gi|307551729|gb|ADN51794.1| Like-Sm ribonucleoprotein core [Vulcanisaeta distributa DSM
14429]
Length = 77
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77
K ++ KL+ G E +G+LV D ++N L +TEE ++ K G ++IR + +L+I A
Sbjct: 18 KVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEE-VNPKGGVKGGLMIIRGDTVLFISPA 75
>gi|256273052|gb|EEU08010.1| Lsm6p [Saccharomyces cerevisiae JAY291]
gi|349577428|dbj|GAA22597.1| K7_Lsm6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 86
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG----HCTGKLGEVLIR 67
FL+ + GK+V KL G Y G L S DG+MN L+S E + +V +R
Sbjct: 15 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNNDVFLR 74
Query: 68 CNNILYI 74
++YI
Sbjct: 75 GTQVMYI 81
>gi|126460705|ref|YP_001056983.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250426|gb|ABO09517.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 86
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGE 63
LP +P L + K V+ +LK G KG+L + D MN L E+ G + G
Sbjct: 10 LP-SPIKVLTKMLNKEVVARLKGGIAVKGVLTAYDSCMNLVLDDAAELDRSGEPVTRYGR 68
Query: 64 VLIRCNNILYIRGAE 78
+++R + ++Y+ +
Sbjct: 69 IVVRGSQVIYVSAID 83
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|330827552|ref|XP_003291838.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
gi|325077961|gb|EGC31640.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
Length = 78
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
P L L K + KL +GIL D +MN L T E++ ++G VLIR N+
Sbjct: 9 PDLTRLLDKKLNVKLNGNRTVQGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVLIRGNS 68
Query: 71 ILYIRGAE 78
I+ + E
Sbjct: 69 IILMEPLE 76
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK +G L+ D +MN L S+EEI + LG +++R +N++ I
Sbjct: 14 VLIKLKGSKTIRGTLLGFDQHMNLLLDSSEEIPAEGDSKSLGTIVVRGDNVVMI 67
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|342870013|gb|EGU73372.1| hypothetical protein FOXB_16133 [Fusarium oxysporum Fo5176]
Length = 127
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LVS D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|294463283|gb|ADE77177.1| unknown [Picea sitchensis]
Length = 146
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLRTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|225563373|gb|EEH11652.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus G186AR]
Length = 124
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|154281997|ref|XP_001541811.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
gi|150411990|gb|EDN07378.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
Length = 124
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|340376985|ref|XP_003387011.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Amphimedon queenslandica]
Length = 125
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L ++ +LK G Y G LVS D +MN QL +E+I DG K+ E
Sbjct: 5 PLSLLKAAQDNPMLVELKNGETYNGHLVSCDNWMNIQL---KEVICTSRDGDRFWKMPEC 61
Query: 65 LIRCNNILYIRGAEE 79
IR + I Y+R +E
Sbjct: 62 FIRGSMIKYLRIPDE 76
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3657 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 3713
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 3714 YIRGNTIKYLRVPDE 3728
>gi|302831786|ref|XP_002947458.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
gi|300267322|gb|EFJ51506.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
Length = 140
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L +V+ +LK G Y G L D +MN L+ E+I DG K+ E
Sbjct: 3 PLSLLKTAQRHAVLVELKNGETYNGYLQQCDTWMNLHLS---EVICTSKDGQRFFKMPEA 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I YI EE
Sbjct: 60 YIRGNTIKYISVPEE 74
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|169606003|ref|XP_001796422.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
gi|111065978|gb|EAT87098.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
Length = 187
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIRCNN 70
L TG ++ +LK G G+LV+ D +MN L + DG +L E+ +R +
Sbjct: 66 LLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGST 125
Query: 71 ILYIRGAEE 79
I Y+R +E
Sbjct: 126 IKYLRVPDE 134
>gi|66811318|ref|XP_639367.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74854860|sp|Q54RX0.1|RUXG_DICDI RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|60468000|gb|EAL66011.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 85
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
P L L K + KL GIL D +MN L T E++ ++G V+IR N+
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNS 68
Query: 71 ILYIRGAE 78
IL + E
Sbjct: 69 ILLMEPLE 76
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|154311062|ref|XP_001554861.1| hypothetical protein BC1G_06649 [Botryotinia fuckeliana B05.10]
Length = 690
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LVS D +MN L + DG +L E+ ++
Sbjct: 4 PLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVK 63
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 64 GNNIKYLRMPDE 75
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 16 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 72
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 73 YIRGNTIKYLRVPDE 87
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|221220698|gb|ACM09010.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|221221936|gb|ACM09629.1| Small nuclear ribonucleoprotein G [Salmo salar]
Length = 76
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G + +G+L D +MN + E+ G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRQVQGVLRGFDPFMNLVMDDCLEMAPGGIQNT 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L K V LK G LV D YMN L EE +G K+G+V+IR
Sbjct: 5 PMKMLEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDDAEE--NGEVQRKIGKVIIRG 62
Query: 69 NNILYI 74
+N++ I
Sbjct: 63 SNVVRI 68
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
+R N I Y+R +E
Sbjct: 60 YVRGNTIKYLRVPDE 74
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ PL + FLN K + LK +G LV D YMN L TEE + T +
Sbjct: 1 MTLPLKM-LENFLN----KRISLLLKDNRVLEGKLVGYDDYMNMVLMDTEEKTE-EMTRR 54
Query: 61 LGEVLIRCNNIL 72
LG V++R NN++
Sbjct: 55 LGTVILRGNNVV 66
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 49 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 105
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 106 YIRGNTIKYLRVPDE 120
>gi|367022520|ref|XP_003660545.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
gi|347007812|gb|AEO55300.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
Length = 128
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LV D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|284413736|ref|NP_001165120.1| small nuclear ribonucleoprotein polypeptide G [Xenopus (Silurana)
tropicalis]
gi|138519693|gb|AAI35835.1| LOC100125174 protein [Xenopus (Silurana) tropicalis]
Length = 76
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + EI G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVIDECTEISGGGHQNT 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G KL EV IR
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFKLPEVYIR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
G V+ KL+ +G L S D ++N L EEI T KLG ++IR +N++ I
Sbjct: 14 GSIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSDGSTRKLGTLVIRGDNVVLI 70
>gi|440638708|gb|ELR08627.1| hypothetical protein GMDG_03318 [Geomyces destructans 20631-21]
Length = 124
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LVS D +MN L + +G +L EV ++
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDKFFRLAEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii
IFO 4308]
Length = 121
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L S D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLASCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|156098332|ref|XP_001615198.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium vivax Sal-1]
gi|148804072|gb|EDL45471.1| U6 snRNA associated Sm-like protein Lsm4, putative [Plasmodium
vivax]
Length = 127
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L + V+ +LK G Y G LV D +MN + + II DG K+ E
Sbjct: 4 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKN---IICTSKDGDKFWKISEC 60
Query: 65 LIRCNNILYIRGAEEGDEEG 84
+R N++ YIR ++ ++
Sbjct: 61 YVRGNSVKYIRVQDQAIDQA 80
>gi|307107546|gb|EFN55788.1| hypothetical protein CHLNCDRAFT_22901 [Chlorella variabilis]
Length = 132
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L V+ +LK G Y G +V D +MN L E+I DG ++ E
Sbjct: 3 PLVLLKTAAAHPVLIELKNGETYNGHMVQCDTWMNIHL---REVICTSKDGDRFWRMPEA 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|240275971|gb|EER39484.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325093332|gb|EGC46642.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 124
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L EV +R
Sbjct: 3 PLGLLAAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
V+ KLK +G L+ D +MN L S+EEI + LG +++R +N++ I
Sbjct: 18 VLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGDSKSLGSIVVRGDNVVMI 71
>gi|291244885|ref|XP_002742321.1| PREDICTED: small nuclear ribonucleoprotein polypeptide G-like
[Saccoglossus kowalevskii]
Length = 77
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G + G+L D +MN + + E I G +
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRQVTGVLRGYDPFMNLVMDESVEEISGGEKHQ 56
Query: 61 LGEVLIRCNNILYI 74
+G V+IR N+I+ +
Sbjct: 57 IGMVVIRGNSIIML 70
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ +
Sbjct: 3 PLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPDC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi
strain H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L + V+ +LK G Y G LV D +MN + + II DG K+ E
Sbjct: 4 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKN---IICTSKDGDKFWKISEC 60
Query: 65 LIRCNNILYIRGAEEGDEEG 84
+R N++ YIR +E ++
Sbjct: 61 YVRGNSVKYIRVQDEAIDQA 80
>gi|213513524|ref|NP_001134580.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|209734434|gb|ACI68086.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|303659717|gb|ADM15968.1| Small nuclear ribonucleoprotein G [Salmo salar]
Length = 76
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G + +G+L D +MN + E+ G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRQVQGVLRGFDPFMNLVMDDCLEMAPGGIQNT 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGLVVIRGNSIIMLEALER 75
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIRCNNILYI 74
V+ KLK +G L+ D +MN L S+EEI +G G LG +++R +N++ I
Sbjct: 18 VLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKG-LGSIVVRGDNVVMI 71
>gi|432328294|ref|YP_007246438.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135003|gb|AGB04272.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 72
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ PL + F+N K + LK +G LV D YMN L TEE + T +
Sbjct: 1 MTMPLKM-LENFMN----KRISLLLKDNRVLEGKLVGFDDYMNMVLMDTEEKTE-EMTRR 54
Query: 61 LGEVLIRCNNILYI 74
LG V++R NN++ +
Sbjct: 55 LGTVILRGNNVVRM 68
>gi|414876858|tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|391341871|ref|XP_003745250.1| PREDICTED: uncharacterized protein LOC100904769 [Metaseiulus
occidentalis]
Length = 196
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHC 57
T LP +P L ++ +LK G Y G LVS D +MN L E+I +G
Sbjct: 79 QTKLPLSP---LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLG---EVICKSREGDK 132
Query: 58 TGKLGEVLIRCNNILYIRGAEE 79
++ E +RCN I + R +E
Sbjct: 133 VWRIPECYVRCNTIRFPRIPDE 154
>gi|219124066|ref|XP_002182333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406294|gb|EEC46234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 135
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G +V+ D +MN L +++I DG KL
Sbjct: 3 PLTLLRAANGSPILVELKGGDTYNGRVVNCDTFMNMNL---QDVICTSADGEHFSKLPSC 59
Query: 65 LIRCNNILYIR 75
IR ++I Y+R
Sbjct: 60 YIRGSSIKYLR 70
>gi|320590330|gb|EFX02773.1| bar domain containing protein [Grosmannia clavigera kw1407]
Length = 1158
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L+ G ++ +LK G G LV D +MN L + DG ++ EV ++
Sbjct: 367 PLGLLSAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLKGVVQTSPDGDSFMRIPEVYVK 426
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 427 GNNIKYLRVPDE 438
>gi|20260282|gb|AAM13039.1| unknown protein [Arabidopsis thaliana]
gi|22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana]
Length = 129
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLFKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|156395605|ref|XP_001637201.1| predicted protein [Nematostella vectensis]
gi|156224311|gb|EDO45138.1| predicted protein [Nematostella vectensis]
Length = 137
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L ++ +LK G Y G LVS D +MN L E+I DG K+ E
Sbjct: 4 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDTWMNINL---REVICTSRDGDKFWKIPEC 60
Query: 65 LIRCNNILYIRGAEE 79
+R +NI Y+R +E
Sbjct: 61 YVRGSNIKYLRIPDE 75
>gi|440790083|gb|ELR11371.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 136
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P + G +V +LK G Y+G L T+ MNCQ+A+ + DG T L +V IR
Sbjct: 6 PIKVFHEAKGHTVTIELKTGEVYRGQLGDTEDNMNCQMANIQYTARDGRVT-NLEQVYIR 64
Query: 68 CNNILYI 74
+ I ++
Sbjct: 65 GSKIRFM 71
>gi|121715750|ref|XP_001275484.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
gi|119403641|gb|EAW14058.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG----KLGEV 64
P L G ++ +LK G G L + D +MN L +E++ G +L EV
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLIL---KEVVQASPEGDRFFRLPEV 59
Query: 65 LIRCNNILYIRGAEE 79
IR NNI Y+R EE
Sbjct: 60 YIRGNNIKYLRIPEE 74
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G+ ++ +LK G Y G L S D +MN L +E+I DG ++ E
Sbjct: 661 PLTLLKTSCGRPMLVELKNGETYNGTLASCDTWMNVHL---KEVICTSKDGDRFWRMEEC 717
Query: 65 LIRCNNILYI 74
+R N I Y+
Sbjct: 718 YVRGNTIKYV 727
>gi|395841395|ref|XP_003793525.1| PREDICTED: uncharacterized protein LOC100954411 [Otolemur
garnettii]
Length = 186
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 1 MSTPLPCNPK---PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC 57
+S LP NP+ L L +I KL G +GIL D +MN + E+
Sbjct: 104 LSADLPLNPEVPASVLLKLLFPFIIVKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ 163
Query: 58 TGKLGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 164 QNNIGMVVIRGNSIIMLEALER 185
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L V+ +LK G Y G L D +MN L+ E+I DG K+ E
Sbjct: 3 PLSLLKTAQRHGVLVELKNGETYNGYLQHCDTWMNLHLS---EVICTSKDGQRFFKMPEA 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I YI EE
Sbjct: 60 YIRGNTIKYISVPEE 74
>gi|358382645|gb|EHK20316.1| hypothetical protein TRIVIDRAFT_68894 [Trichoderma virens Gv29-8]
Length = 129
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LV D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|323309683|gb|EGA62891.1| Lsm6p [Saccharomyces cerevisiae FostersO]
Length = 119
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEE 51
FL+ + GK+V KL G Y G L S DG+MN L+S E
Sbjct: 52 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATE 91
>gi|428164901|gb|EKX33911.1| hypothetical protein GUITHDRAFT_98209 [Guillardia theta CCMP2712]
Length = 125
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTE-EIIDGHCTGKLGEVLIRCNNILYIRGAEE 79
++ +LK G Y GILV+ D +MN L DG K+ E IR NNI Y+R +E
Sbjct: 1 MLVELKNGETYNGILVNCDIWMNLSLRDVVCTSRDGDKFWKIPECYIRGNNIKYLRVPDE 60
>gi|340383285|ref|XP_003390148.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Amphimedon queenslandica]
Length = 93
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L ++ +LK G Y G LVS D +MN QL +E+I DG K+ E
Sbjct: 5 PLSLLKAAQDNPMLVELKNGETYNGHLVSCDNWMNIQL---KEVICTSRDGERFWKMPEC 61
Query: 65 LIRCNNILYIRGAEE 79
IR + Y+R +E
Sbjct: 62 FIRGSMTKYLRIPDE 76
>gi|357519603|ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|358394136|gb|EHK43537.1| hypothetical protein TRIATDRAFT_266952 [Trichoderma atroviride
IMI 206040]
Length = 130
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LV D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|374327633|ref|YP_005085833.1| Sm-like protein [Pyrobaculum sp. 1860]
gi|356642902|gb|AET33581.1| Sm-like protein [Pyrobaculum sp. 1860]
Length = 67
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIRCNNILYIRGA 77
K ++ +LK G +G+L + DG MN L E+ G + G +++R + ++Y+
Sbjct: 4 KEIVARLKGGVAVRGVLTAYDGCMNLVLDDAAELDKSGEPVTRYGRIVVRGSQVIYVSTG 63
Query: 78 E 78
E
Sbjct: 64 E 64
>gi|449443839|ref|XP_004139683.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 88
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L G ++ +LK G Y G LVS D +MN L +E+I CT K G+ R
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVSCDTWMNVHL---KEVI---CTSKDGDRFWRM 56
Query: 69 NNILYIRG 76
N Y+RG
Sbjct: 57 ANC-YVRG 63
>gi|261195536|ref|XP_002624172.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239588044|gb|EEQ70687.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239610465|gb|EEQ87452.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 124
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L E+ +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEMYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|378734306|gb|EHY60765.1| hypothetical protein HMPREF1120_08709 [Exophiala dermatitidis
NIH/UT8656]
Length = 135
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L E +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDRFWRLPEAYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRVPEE 74
>gi|340517649|gb|EGR47892.1| predicted protein [Trichoderma reesei QM6a]
Length = 152
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LV D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|197127872|gb|ACH44370.1| putative small nuclear ribonucleoprotein polypeptide G
[Taeniopygia guttata]
Length = 76
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + E+ G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAAGGQQNN 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|449457365|ref|XP_004146419.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 138
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L G ++ +LK G Y G LV+ D +MN L E+I CT K G+ R
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVI---CTSKDGDRFWRV 56
Query: 69 NNILYIRGAEEGDEEGEMR 87
+NI+ ++ EE + R
Sbjct: 57 SNIISSLVIDKVQEETKSR 75
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 121
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G +L EV IR
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|440900234|gb|ELR51419.1| Small nuclear ribonucleoprotein G [Bos grunniens mutus]
Length = 76
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K V KL G +GIL D +MN + E+
Sbjct: 1 MSKAHPPKLKKFMD----KKVSLKLNGGRHVQGILQGFDPFMNLVIDECVEMATSGQQNN 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E+
Sbjct: 57 IGMVVIRGNSIIMLEALEQ 75
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG + E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDRFWRTPEC 59
Query: 65 LIRCNNILYIRGAEE 79
IR N I Y+R +E
Sbjct: 60 YIRGNTIKYLRVPDE 74
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L + V+ +LK G Y G LV D +MN + + II DG K+ E
Sbjct: 31 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHM---KNIICTSKDGDKFWKISEC 87
Query: 65 LIRCNNILYIRGAEEGDEEG 84
+R N++ YIR ++ ++
Sbjct: 88 YVRGNSVKYIRVQDQAIDQA 107
>gi|317147119|ref|XP_001821897.2| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 123
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G +L EV IR
Sbjct: 5 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIR 64
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 65 GNNIKYLRIPEE 76
>gi|126133080|ref|XP_001383065.1| hypothetical protein PICST_54497 [Scheffersomyces stipitis CBS
6054]
gi|126094890|gb|ABN65036.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 147
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST-EEIIDGHCTGKLGEVLIR 67
P L K ++ +LK G G LV+ D +MN L + +G K+ EV IR
Sbjct: 3 PLYLLTAAKTKQILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYIR 62
Query: 68 CNNILYIRGAEE 79
N+I Y+R EE
Sbjct: 63 GNHIKYLRLPEE 74
>gi|168067143|ref|XP_001785484.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662891|gb|EDQ49691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 77
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
P L K + KL G G+L D +MN L +T E I+G ++G V+IR N+
Sbjct: 8 PDLKKYMDKKLNIKLNAGRNVVGVLRGFDQFMNLVLDNTVE-INGADRNEIGMVVIRGNS 66
Query: 71 ILYIRGAE 78
++ I E
Sbjct: 67 VVMIEALE 74
>gi|407920870|gb|EKG14049.1| Protein-tyrosine phosphatase receptor/non-receptor type
[Macrophomina phaseolina MS6]
Length = 1134
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRCNNILYIRGAEE 79
++ +LK G G LV+ D +MN L + DG +L EV IR NNI Y+R +E
Sbjct: 1 MLVELKNGETLNGHLVNCDNWMNLTLKEVVQTSPDGDRFWRLPEVYIRGNNIKYLRVPDE 60
>gi|238496529|ref|XP_002379500.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|220694380|gb|EED50724.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|391868822|gb|EIT78031.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 121
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G +L EV IR
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|426230288|ref|XP_004009208.1| PREDICTED: uncharacterized protein LOC101110507, partial [Ovis
aries]
Length = 207
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKL 61
P P L ++ +LK G Y G LVS D +MN L E+I DG ++
Sbjct: 4 PVLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINL---REVICTSRDGDKFWRM 60
Query: 62 GEVLIRCNNILYIRGAEE 79
E IR + I Y+R +E
Sbjct: 61 PECYIRGSTIKYLRIPDE 78
>gi|327349106|gb|EGE77963.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 167
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D +MN L + +G +L E+ +R
Sbjct: 46 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILREVVQTSPEGDRFFRLPEMYVR 105
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 106 GNNIKYLRVPEE 117
>gi|259479587|tpe|CBF69945.1| TPA: U6 snRNA-associated Sm-like protein LSM4, putative
(AFU_orthologue; AFUA_2G12020) [Aspergillus nidulans
FGSC A4]
Length = 119
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G KL EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|118101457|ref|XP_001233287.1| PREDICTED: uncharacterized protein LOC771344 isoform 1 [Gallus
gallus]
gi|126303310|ref|XP_001372569.1| PREDICTED: small nuclear ribonucleoprotein G-like [Monodelphis
domestica]
gi|395507378|ref|XP_003758002.1| PREDICTED: small nuclear ribonucleoprotein G [Sarcophilus
harrisii]
gi|387018738|gb|AFJ51487.1| Sm protein G [Crotalus adamanteus]
Length = 76
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + E+ G
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNN 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALER 75
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G +L EV IR
Sbjct: 15 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIR 74
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 75 GNNIKYLRIPEE 86
>gi|345778417|ref|XP_003431727.1| PREDICTED: uncharacterized protein LOC100682645 [Canis lupus
familiaris]
Length = 181
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
P L K + KL G +GIL D +MN + E+ +G V+IR NN
Sbjct: 112 PKLKKFMDKKLSLKLNDGRHVQGILQGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNN 171
Query: 71 ILYIRGAEE 79
I+ + G E
Sbjct: 172 IIMLEGLER 180
>gi|284161893|ref|YP_003400516.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284011890|gb|ADB57843.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 75
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P + L GK + ++K +E G+L D YMN L + E +G LG +++R
Sbjct: 3 PNQMVRSLVGKMIRVEMKGEENELVGVLEGVDDYMNLCLTNAMECKNGEKIRNLGTIVLR 62
Query: 68 CNNILYIR 75
NNI+ I+
Sbjct: 63 GNNIVIIQ 70
>gi|367045678|ref|XP_003653219.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
gi|347000481|gb|AEO66883.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
Length = 127
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G ++ +LK G G LV D +MN L + +G +L EV ++
Sbjct: 3 PLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDRFMRLPEVYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|380477058|emb|CCF44358.1| small nuclear ribonucleoprotein [Colletotrichum higginsianum]
Length = 170
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG----KLGEVLIR 67
LN G ++ +LK G G LV D +MN L +E++ G K+ EV ++
Sbjct: 45 LLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTL---KEVVQTSPEGDKFVKIPEVYVK 101
Query: 68 CNNILYIRGAEE 79
NNI Y+R ++
Sbjct: 102 GNNIKYLRVPDD 113
>gi|167516422|ref|XP_001742552.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779176|gb|EDQ92790.1| predicted protein [Monosiga brevicollis MX1]
Length = 115
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGKLGEVLIR 67
P L + ++ +LK G Y G L D YMN + T DG K+ E IR
Sbjct: 3 PLSLLRAASNHMMLVELKNGETYNGHLSKCDNYMNITMRDVTLTSKDGDRFWKMPECYIR 62
Query: 68 CNNILYIRGAEE 79
NNI ++R +E
Sbjct: 63 GNNIKFLRIPDE 74
>gi|313241313|emb|CBY33589.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L ++ +LK G Y G LV+ D +MN QL E+I DG ++ E
Sbjct: 3 PLSLLKTAVNHPMLVELKNGETYNGHLVNCDNWMNLQL---REVICTSRDGDHFWRMNEC 59
Query: 65 LIRCNNILYIRGAEE 79
+R + I Y+R +E
Sbjct: 60 YVRGSTIKYLRIPDE 74
>gi|313236950|emb|CBY12197.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L ++ +LK G Y G LV+ D +MN QL E+I DG ++ E
Sbjct: 3 PLSLLKTAVNHPMLVELKNGETYNGHLVNCDNWMNLQL---REVICTSRDGDHFWRMNEC 59
Query: 65 LIRCNNILYIRGAEE 79
+R + I Y+R +E
Sbjct: 60 YVRGSTIKYLRIPDE 74
>gi|435850907|ref|YP_007312493.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
gi|433661537|gb|AGB48963.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
Length = 71
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L EE+ + T KLG V+IR
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGNLQGYDVHMNLVLEEAEELRE-GETRKLGTVIIRG 63
Query: 69 NNILYI 74
+N++Y+
Sbjct: 64 DNVVYV 69
>gi|389631277|ref|XP_003713291.1| sm snRNP core protein Smg1 [Magnaporthe oryzae 70-15]
gi|351645624|gb|EHA53484.1| sm snRNP core protein Smg1 [Magnaporthe oryzae 70-15]
gi|440466674|gb|ELQ35928.1| sm snRNP core protein Smg1 [Magnaporthe oryzae Y34]
gi|440476979|gb|ELQ58129.1| sm snRNP core protein Smg1 [Magnaporthe oryzae P131]
Length = 88
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P+P L K V +L + G++ D ++N L E DG K+G V+IR
Sbjct: 4 PQPELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEEKDGGEKVKIGTVVIRG 63
Query: 69 NNILYIRGAE 78
N+++ + E
Sbjct: 64 NSVVMLEAME 73
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G LV+ D YMN L + +G +L E +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKFFRLPECYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|341886102|gb|EGT42037.1| CBN-SNR-1 protein [Caenorhabditis brenneri]
Length = 136
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P L+ G +V + G Y+G L+ + MNCQLA T + +L V IR
Sbjct: 7 PIKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLAETIVTFRDGRSHQLENVFIRG 66
Query: 69 NNILYI 74
N I ++
Sbjct: 67 NKIRFM 72
>gi|145232181|ref|XP_001399544.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus niger CBS
513.88]
gi|134056455|emb|CAL00622.1| unnamed protein product [Aspergillus niger]
Length = 121
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|119481265|ref|XP_001260661.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|146322938|ref|XP_755534.2| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus fumigatus
Af293]
gi|119408815|gb|EAW18764.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|129558535|gb|EAL93496.2| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus Af293]
Length = 119
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|402079351|gb|EJT74616.1| glycine rich protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 141
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P LN G +++ +LK G G LV D +MN + + +G +L E+ ++
Sbjct: 3 PLGLLNAAQGHAMMVELKNGETLNGHLVMCDTWMNLTMKEVVQTSPEGDKFMRLPEIYVK 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R +E
Sbjct: 63 GNNIKYLRVPDE 74
>gi|402861349|ref|XP_003895059.1| PREDICTED: small nuclear ribonucleoprotein G-like [Papio anubis]
Length = 76
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P K F++ K + KL G +GIL D +MN + E+
Sbjct: 1 MSKAHPPELKKFMD----KKLSLKLNGGRRVQGILQGFDPFMNLVIDECVEMAISGQQNN 56
Query: 61 LGEVLIRCNNILYIRGAEE 79
+G V+IR NNI+ + E
Sbjct: 57 IGMVVIRGNNIIMLEALER 75
>gi|195655461|gb|ACG47198.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----DGHCTGKLGEV 64
P L G ++ +LK G Y G LV+ D +MN L E+I DG ++ E
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL---REVICTSKDGDKFWRMPEC 59
Query: 65 LIRCNNILYIRGAEE 79
R N I Y+R +E
Sbjct: 60 YXRGNTIKYLRVPDE 74
>gi|350634474|gb|EHA22836.1| hypothetical protein ASPNIDRAFT_127789 [Aspergillus niger ATCC
1015]
Length = 118
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 67
P L G ++ +LK G G L + D +MN L + +G +L EV +R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 68 CNNILYIRGAEE 79
NNI Y+R EE
Sbjct: 63 GNNIKYLRIPEE 74
>gi|340505820|gb|EGR32114.1| small nuclear ribonucleoprotein, putative [Ichthyophthirius
multifiliis]
Length = 85
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNN 70
P L GK ++ L +G++ D YMN L + +E+I +G+ ++R N+
Sbjct: 16 PDLQKYNGKRLLVYLNGKRRVQGVVKGHDNYMNIVLENAQELIGKDKVNNIGKAVVRGNS 75
Query: 71 IL 72
I+
Sbjct: 76 II 77
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,475,507,589
Number of Sequences: 23463169
Number of extensions: 52065834
Number of successful extensions: 99370
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 98345
Number of HSP's gapped (non-prelim): 1034
length of query: 88
length of database: 8,064,228,071
effective HSP length: 58
effective length of query: 30
effective length of database: 6,703,364,269
effective search space: 201100928070
effective search space used: 201100928070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)