BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6372
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosophila melanogaster
GN=SmF PE=3 SV=2
Length = 88
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 73/88 (82%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS +P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE+I+G TG
Sbjct: 1 MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LYI+G E+ DEEGEMR+
Sbjct: 61 LGEVLIRCNNVLYIKGMEDDDEEGEMRD 88
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F OS=Arabidopsis
thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 61/78 (78%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFLN LTGK+VI KLKWG EYKG L S D YMN QL +TEE IDG TG LGE+
Sbjct: 4 IPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEI 63
Query: 65 LIRCNNILYIRGAEEGDE 82
LIRCNN+LY+RG E +E
Sbjct: 64 LIRCNNVLYVRGVPEDEE 81
>sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3
SV=1
Length = 86
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=2
SV=1
Length = 86
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1
SV=1
Length = 86
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3
SV=2
Length = 86
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIRCNNILYIRGA 77
LIRCNN+LYIRG
Sbjct: 63 LIRCNNVLYIRGV 75
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F OS=Caenorhabditis
elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 62/82 (75%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK V+CKLKWG EYKG+LV+ D YMN QLA EE IDG+ G
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60
Query: 61 LGEVLIRCNNILYIRGAEEGDE 82
LGE+LIRCNN+LY+ G + +E
Sbjct: 61 LGEILIRCNNVLYVGGVDGENE 82
>sp|O59734|RUXF_SCHPO Small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smf1 PE=1 SV=1
Length = 78
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 53/70 (75%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFL L GK V+ +LKWG EYKG L S D YMN QL + EE++DG TG LGE+
Sbjct: 4 VPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEI 63
Query: 65 LIRCNNILYI 74
LIRCNN+L++
Sbjct: 64 LIRCNNVLWV 73
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum
GN=snrpf PE=3 SV=1
Length = 91
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
MS PKPFL L GK + +LKWG EY+GIL S D YMN QLA+TEE IDG G
Sbjct: 1 MSKIEALAPKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKG 60
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LGEVLIRCNN+L++RG ++
Sbjct: 61 PLGEVLIRCNNVLFVRGIDD 80
>sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B2O8.190 PE=3 SV=1
Length = 90
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+PFL L V +LKWG EY G LVS D YMN QL+ T+E I+ TG LG+
Sbjct: 4 VPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQ 63
Query: 64 VLIRCNNILYIRGAEEGDEEGEMR 87
VLIRCNN+LYI+ A+E + G+++
Sbjct: 64 VLIRCNNVLYIKKADEAETSGDVK 87
>sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX3 PE=1 SV=1
Length = 86
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
+S P NPKPFL L V KLK+ EY+G LVSTD Y N QL EE + G G
Sbjct: 7 ISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHG 66
Query: 60 KLGEVLIRCNNILYIR 75
LGE+ IRCNN+LYIR
Sbjct: 67 TLGEIFIRCNNVLYIR 82
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK VI +L G +Y+G+L DGYMN L TEE ++G T + G+ IR
Sbjct: 27 SPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIR 86
Query: 68 CNNILYIRGAE 78
NN+LYI AE
Sbjct: 87 GNNVLYISAAE 97
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm6 PE=1 SV=1
Length = 75
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+ +P FLN + GK V+ +L G +YKGIL DGYMN L TEE ++G T G+
Sbjct: 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 60
Query: 65 LIRCNNILYIRGAEE 79
IR NN+LY+ ++
Sbjct: 61 FIRGNNVLYVSALDD 75
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6
PE=3 SV=1
Length = 80
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6
PE=1 SV=1
Length = 80
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 69 NNILYI 74
NN+LYI
Sbjct: 68 NNVLYI 73
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis
(strain RS) GN=LSM6 PE=3 SV=1
Length = 80
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG SV KL G YKG L S DGYMN L T+E ++G G+V +R
Sbjct: 11 DPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 39/67 (58%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ +TG V KL G YKG L S DGYMN L TEE +DG G+ +R
Sbjct: 11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L +EE +DG G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2
Length = 80
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
+P FL + G SV KL G EY+G L + DGYMN L + +E+ID T G+V +
Sbjct: 10 IDPSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDVFL 69
Query: 67 RCNNILYI 74
R NN+LYI
Sbjct: 70 RGNNVLYI 77
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G Y+G L S DGYMN L +EE +DG G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIR 70
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 71 GNNVLYI 77
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L ++E +DG G+ IR
Sbjct: 10 DPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIR 69
Query: 68 CNNILYI 74
NN+LYI
Sbjct: 70 GNNVLYI 76
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL+ + G SV +L G EY G L S DGYMN L T+E + G G+V IR
Sbjct: 17 PSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRG 76
Query: 69 NNILYIRGA 77
NN+LYI A
Sbjct: 77 NNVLYISEA 85
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE I+G G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L TEE ++G G+ +R
Sbjct: 13 DPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2
Length = 85
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P FL + GK+V +L G +Y+G+L DGYMN L T E +DG G+ IR
Sbjct: 15 PNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGDAFIRG 74
Query: 69 NNILYIRGAEE 79
NN++YI E+
Sbjct: 75 NNVMYITALEK 85
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 21 VICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
VI KLK E++G+L S D +MN L EE+ DG T +LG VLIR +NI+YI
Sbjct: 26 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 79
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVR 72
Query: 68 CNNILYIRGA 77
NN++YI +
Sbjct: 73 GNNVMYIAAS 82
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
F + G+ V+ KL G EY+GIL DG MN + TEE ++G K G+ +R NN+
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNV 79
Query: 72 LYI 74
LYI
Sbjct: 80 LYI 82
>sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=LSM6 PE=3
SV=2
Length = 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G V KL G YKG L S DGYMN L +E+ +G G+ +R
Sbjct: 18 DPSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVR 77
Query: 68 CNNILYI 74
NN+ YI
Sbjct: 78 GNNVTYI 84
>sp|A8NHT8|LSM6_COPC7 U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=LSM6 PE=3 SV=2
Length = 95
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + GK V+ +L G +Y+GIL DGYMN + TEE ++G + G+ IR
Sbjct: 23 SPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAFIR 82
Query: 68 CNNILYIRGAE 78
NN+LYI E
Sbjct: 83 GNNVLYISADE 93
>sp|P0CR24|LSM6_CRYNJ U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=LSM6 PE=3 SV=1
Length = 88
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P+ +P FL + GK V ++ G +Y G+L DGYMN L EE T G+
Sbjct: 12 PVSGSPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGD 71
Query: 64 VLIRCNNILYIRGAEE 79
+R NN+LYI E+
Sbjct: 72 CFLRGNNVLYISALED 87
>sp|P0CR25|LSM6_CRYNB U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=LSM6 PE=3 SV=1
Length = 88
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
P+ +P FL + GK V ++ G +Y G+L DGYMN L EE T G+
Sbjct: 12 PVSGSPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGD 71
Query: 64 VLIRCNNILYIRGAEE 79
+R NN+LYI E+
Sbjct: 72 CFLRGNNVLYISALED 87
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN SVI +LK E++G+L D +MN L EE+ DG K+G V+IR
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEIVRKIGGVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia
fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2
Length = 85
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL +KG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPSSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVR 72
Query: 68 CNNILYIRGAE 78
NN++YI E
Sbjct: 73 GNNVMYISADE 83
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P P LN VI +LK G E++G L D +MN L EEI +G K+G V
Sbjct: 1 MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSV 60
Query: 65 LIRCNNILYIRGAEEGD 81
+IR + ++++ A G+
Sbjct: 61 VIRGDTVVFVSPAPGGE 77
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL+ + G VI KL +KG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVR 72
Query: 68 CNNILYI 74
NN++YI
Sbjct: 73 GNNVMYI 79
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLG 62
TP P L ++V+ +K EY GIL D YMN L + EII+G G
Sbjct: 4 TPANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYD 63
Query: 63 EVLIRCNNILYI 74
VL+R +N++++
Sbjct: 64 RVLVRGDNVIFV 75
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3
SV=1
Length = 76
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA+ E + DG K G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKIVIRGDNVLAISPTE 74
Query: 79 EG 80
EG
Sbjct: 75 EG 76
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 7 CNPKPF--LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
N KP L ++V+ +K EY GIL D YMN L + EII+G G +
Sbjct: 6 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRI 65
Query: 65 LIRCNNILYIRGAEEGDEE 83
L+R +N++++ +GD E
Sbjct: 66 LVRGDNVIFV-SPSKGDNE 83
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E + DG K G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKIVIRGDNVLAISPTE 74
Query: 79 E 79
E
Sbjct: 75 E 75
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG + G+++IR +N+L I E
Sbjct: 15 KDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 74
Query: 79 E 79
E
Sbjct: 75 E 75
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L + EE+ +G K G V+IR
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L + EE+ DG K V+IR
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G E++G L+ D ++N LA E I DG K G+++IR +N+L I +
Sbjct: 15 KDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDGEVVKKYGKIVIRGDNVLAISPVD 74
Query: 79 EGDE 82
G E
Sbjct: 75 VGVE 78
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78
K V+ LK G+E++G L+ D ++N LA E I DG K G+++IR +N+L + E
Sbjct: 15 KDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKKYGKIVIRGDNVLALSPVE 74
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK G E++G L D +MN L + EE+ + + KLG +++R
Sbjct: 5 PLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTIIVRG 64
Query: 69 NNILYI 74
+ ++Y+
Sbjct: 65 DTVVYV 70
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68
P LN VI +LK E++G L D +MN L + EE+ +G K V+IR
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRG 64
Query: 69 NNILYI 74
+N++Y+
Sbjct: 65 DNVVYV 70
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST-EEIIDGHCTGKLGEVLIR 67
P LN G+ ++ +LK G + G L + D YMN L + DG +L E IR
Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62
Query: 68 CNNILYIRGAEE-----GDEEGEMRE 88
NNI Y+R +E ++ + RE
Sbjct: 63 GNNIKYLRIQDEVLSQVAKQQAQQRE 88
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYI 74
K V+ LK G E++G L+ D ++N LA + I DG G++++R +N+L I
Sbjct: 15 KDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDGEVVKSYGKIVVRGDNVLAI 70
>sp|A7TK72|LSM6_VANPO U6 snRNA-associated Sm-like protein LSm6 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=LSM6 PE=3
SV=1
Length = 83
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
FL + GK V KL G YKG L S DG+MN L++T E + + +L R N
Sbjct: 15 FLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESNA-----HMLKRYEND 69
Query: 72 LYIRGAE 78
+++RG +
Sbjct: 70 VFLRGTQ 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,759,576
Number of Sequences: 539616
Number of extensions: 1279722
Number of successful extensions: 2294
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2223
Number of HSP's gapped (non-prelim): 78
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)