Query psy6372
Match_columns 88
No_of_seqs 101 out of 1063
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 00:48:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_F Small nuclear ribonucle 100.0 1.5E-32 5.2E-37 169.8 10.9 86 1-88 1-86 (86)
2 1i4k_A Putative snRNP SM-like 99.9 6.7E-27 2.3E-31 141.1 11.0 75 7-81 3-77 (77)
3 1d3b_A Protein (small nuclear 99.9 6.9E-27 2.4E-31 141.0 10.2 73 6-78 3-75 (75)
4 1h64_1 SnRNP SM-like protein; 99.9 1.1E-26 3.7E-31 139.7 10.6 73 7-79 3-75 (75)
5 1th7_A SnRNP-2, small nuclear 99.9 1.1E-26 3.6E-31 141.7 8.9 77 3-79 4-80 (81)
6 4emk_B U6 snRNA-associated SM- 99.9 9.9E-27 3.4E-31 140.1 8.6 73 7-79 3-75 (75)
7 1ljo_A Archaeal SM-like protei 99.9 3.3E-26 1.1E-30 138.2 10.7 73 7-79 4-77 (77)
8 1i8f_A Putative snRNP SM-like 99.9 2.4E-26 8.1E-31 140.2 9.8 74 5-79 8-81 (81)
9 4emh_A Probable U6 snRNA-assoc 99.9 3.2E-26 1.1E-30 146.1 9.0 80 3-82 11-91 (105)
10 1n9r_A SMF, small nuclear ribo 99.9 4.5E-26 1.5E-30 142.6 9.4 77 3-79 16-93 (93)
11 1mgq_A SM-like protein; LSM, R 99.9 2.8E-25 9.5E-30 136.1 11.1 73 4-76 11-83 (83)
12 3s6n_G Small nuclear ribonucle 99.9 2.2E-25 7.6E-30 134.5 7.8 71 9-79 5-75 (76)
13 3bw1_A SMX4 protein, U6 snRNA- 99.9 1E-24 3.5E-29 136.9 10.8 77 7-83 9-92 (96)
14 4emk_A U6 snRNA-associated SM- 99.9 1.7E-24 6E-29 135.7 10.7 74 5-78 17-91 (94)
15 2y9a_D Small nuclear ribonucle 99.9 1.2E-24 4.2E-29 142.7 10.2 77 6-82 3-79 (126)
16 1b34_A Protein (small nuclear 99.9 1.8E-24 6E-29 140.5 9.9 73 8-80 2-74 (119)
17 4emg_A Probable U6 snRNA-assoc 99.9 3.8E-24 1.3E-28 133.7 10.2 78 1-78 1-92 (93)
18 1d3b_B Protein (small nuclear 99.9 1.2E-24 4.1E-29 134.9 7.8 77 6-82 2-88 (91)
19 2fwk_A U6 snRNA-associated SM- 99.9 3.8E-24 1.3E-28 139.2 7.1 78 5-82 25-117 (121)
20 3s6n_E Small nuclear ribonucle 99.9 5.5E-24 1.9E-28 132.9 6.8 76 4-79 12-92 (92)
21 4emk_C U6 snRNA-associated SM- 99.9 2.5E-23 8.7E-28 134.1 9.4 76 7-82 22-104 (113)
22 1b34_B Protein (small nuclear 99.9 4.9E-22 1.7E-26 128.7 8.8 75 6-80 25-115 (118)
23 3pgw_B SM B; protein-RNA compl 99.8 4.3E-21 1.5E-25 136.2 9.9 73 7-79 3-85 (231)
24 1m5q_A SMAP3, small nuclear ri 99.8 3.3E-21 1.1E-25 126.9 8.2 70 10-83 2-71 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.2 2.7E-11 9.3E-16 74.5 6.6 69 8-83 8-77 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.4 0.002 7E-08 39.4 8.3 66 15-80 10-85 (88)
27 2ylb_A Protein HFQ; RNA-bindin 97.3 0.0004 1.4E-08 41.3 5.0 57 9-78 10-68 (74)
28 1u1s_A HFQ protein; SM-like ba 97.3 0.00054 1.8E-08 41.5 5.0 37 10-47 9-47 (82)
29 3sb2_A Protein HFQ; SM-like, R 97.3 0.00056 1.9E-08 41.1 5.0 65 1-78 1-67 (79)
30 3ahu_A Protein HFQ; SM-like mo 97.2 0.00054 1.8E-08 41.1 4.4 36 10-45 13-50 (78)
31 2y90_A Protein HFQ; RNA-bindin 97.1 0.00065 2.2E-08 42.8 4.3 38 9-47 10-49 (104)
32 3hfo_A SSR3341 protein; HFQ, S 97.1 0.0021 7.1E-08 37.8 6.1 65 1-76 1-68 (70)
33 3hfn_A ASL2047 protein; HFQ, S 97.0 0.0035 1.2E-07 37.0 6.5 65 1-76 3-70 (72)
34 1kq1_A HFQ, HOST factor for Q 97.0 0.0055 1.9E-07 36.5 7.3 36 10-45 9-46 (77)
35 4a53_A EDC3; RNA binding prote 96.9 0.0027 9.1E-08 41.1 5.8 57 13-80 7-65 (125)
36 2fb7_A SM-like protein, LSM-14 96.8 0.0037 1.3E-07 38.7 5.7 70 9-78 10-89 (95)
37 2vc8_A Enhancer of mRNA-decapp 96.7 0.0081 2.8E-07 36.4 6.6 63 14-79 5-69 (84)
38 2qtx_A Uncharacterized protein 96.3 0.009 3.1E-07 35.1 5.1 34 12-45 17-52 (71)
39 1y96_B Gemin7, SIP3, GEM-assoc 96.3 0.023 8E-07 34.4 6.8 63 10-77 21-84 (85)
40 1ycy_A Conserved hypothetical 96.2 0.035 1.2E-06 32.1 7.1 61 11-76 9-69 (71)
41 1ib8_A Conserved protein SP14. 93.4 0.06 2.1E-06 35.8 3.1 44 2-46 85-135 (164)
42 3rux_A BIRA bifunctional prote 92.3 0.29 9.9E-06 34.6 5.6 34 16-49 222-255 (270)
43 1sg5_A ORF, hypothetical prote 89.6 0.21 7.3E-06 30.0 2.3 38 1-38 1-45 (86)
44 1bia_A BIRA bifunctional prote 89.4 0.89 3E-05 32.6 5.9 48 16-68 271-318 (321)
45 2eay_A Biotin [acetyl-COA-carb 89.4 0.32 1.1E-05 33.5 3.5 47 16-68 186-232 (233)
46 2ej9_A Putative biotin ligase; 88.4 1.4 4.6E-05 30.4 6.1 32 16-48 190-221 (237)
47 2xk0_A Polycomb protein PCL; t 86.5 1.1 3.7E-05 26.0 3.9 39 3-41 4-42 (69)
48 2rm4_A CG6311-PB, DM EDC3; enh 86.3 4.2 0.00014 25.1 8.5 62 14-78 8-71 (103)
49 2e12_A SM-like motif, hypothet 81.0 1.9 6.5E-05 26.4 3.5 18 18-35 28-45 (101)
50 2dxu_A Biotin--[acetyl-COA-car 78.1 1.8 6.1E-05 29.8 3.1 30 17-48 188-217 (235)
51 2qqr_A JMJC domain-containing 74.8 4.1 0.00014 25.8 3.9 24 16-39 7-30 (118)
52 3rkx_A Biotin-[acetyl-COA-carb 74.2 4.2 0.00014 29.3 4.3 32 16-48 277-308 (323)
53 4hcz_A PHD finger protein 1; p 73.3 6.6 0.00023 21.9 4.1 25 17-41 6-30 (58)
54 3bfm_A Biotin protein ligase-l 72.5 5.6 0.00019 27.1 4.5 28 16-48 192-219 (235)
55 4gop_A Putative uncharacterize 65.5 3.3 0.00011 25.7 1.9 38 1-47 1-38 (114)
56 2eqj_A Metal-response element- 64.9 12 0.00041 21.3 4.1 25 17-41 16-40 (66)
57 2pi2_E Replication protein A 1 61.9 2.9 0.0001 27.1 1.2 25 1-25 26-50 (142)
58 3kdf_A Replication protein A 1 59.9 3.4 0.00012 25.9 1.2 24 1-24 5-28 (121)
59 3fb9_A Uncharacterized protein 59.5 18 0.00062 21.7 4.4 31 11-41 18-52 (90)
60 2e5p_A Protein PHF1, PHD finge 56.7 21 0.00071 20.4 4.1 25 17-41 12-36 (68)
61 2m0o_A PHD finger protein 1; t 53.2 7.4 0.00025 22.9 1.8 26 16-41 28-53 (79)
62 4a8c_A Periplasmic PH-dependen 50.2 26 0.00089 25.8 4.9 31 19-49 88-118 (436)
63 1ky9_A Protease DO, DEGP, HTRA 49.7 26 0.0009 26.0 4.9 31 19-49 111-141 (448)
64 3by7_A Uncharacterized protein 47.0 47 0.0016 20.2 5.9 56 22-79 7-77 (100)
65 3kl9_A PEPA, glutamyl aminopep 45.9 17 0.00059 26.3 3.3 25 14-38 95-119 (355)
66 2e5q_A PHD finger protein 19; 45.6 20 0.00068 20.2 2.8 25 17-41 10-34 (63)
67 1nh2_D Transcription initiatio 43.4 59 0.002 20.4 5.4 28 27-54 57-87 (121)
68 3uby_A DNA-3-methyladenine gly 42.9 38 0.0013 23.4 4.4 34 9-42 16-49 (219)
69 3stj_A Protease DEGQ; serine p 41.6 37 0.0013 24.3 4.4 31 19-49 88-118 (345)
70 3tee_A Flagella basal BODY P-r 39.6 20 0.00067 24.4 2.6 23 15-37 168-190 (219)
71 1x4r_A PARP14 protein; WWE dom 39.6 1.9 6.6E-05 26.5 -2.3 19 32-50 34-52 (99)
72 3sti_A Protease DEGQ; serine p 37.5 41 0.0014 22.9 4.0 31 19-49 88-118 (245)
73 3pv2_A DEGQ; trypsin fold, PDZ 37.1 36 0.0012 25.3 3.8 31 19-49 102-132 (451)
74 3lgi_A Protease DEGS; stress-s 36.5 57 0.0019 21.6 4.5 30 19-48 77-106 (237)
75 3tjo_A Serine protease HTRA1; 36.1 58 0.002 21.6 4.5 32 18-49 86-117 (231)
76 3j21_c 50S ribosomal protein L 36.0 51 0.0017 19.6 3.7 36 11-46 33-68 (87)
77 1lcy_A HTRA2 serine protease; 33.9 61 0.0021 22.7 4.5 31 19-49 71-101 (325)
78 1te0_A Protease DEGS; two doma 33.9 62 0.0021 22.5 4.5 31 19-49 66-96 (318)
79 1y8t_A Hypothetical protein RV 32.3 61 0.0021 22.5 4.3 31 19-49 64-94 (324)
80 1nvp_D Transcription initiatio 31.8 90 0.0031 19.1 5.3 28 27-54 53-83 (108)
81 3frn_A Flagellar protein FLGA; 30.7 38 0.0013 24.2 2.9 23 15-37 237-260 (278)
82 3num_A Serine protease HTRA1; 29.0 1E+02 0.0034 21.5 5.0 30 19-48 70-99 (332)
83 1zq1_A Glutamyl-tRNA(Gln) amid 28.8 43 0.0015 25.3 3.1 39 10-48 4-53 (438)
84 2p5z_X Type VI secretion syste 28.3 75 0.0026 23.5 4.3 28 13-40 58-96 (491)
85 1o9y_A HRCQ2; secretory protei 28.2 87 0.003 17.8 4.0 34 15-48 46-79 (84)
86 1sqr_A 50S ribosomal protein L 27.4 72 0.0024 19.3 3.4 37 11-47 33-69 (95)
87 3qo6_A Protease DO-like 1, chl 27.2 85 0.0029 22.2 4.3 30 19-48 77-106 (348)
88 2equ_A PHD finger protein 20-l 26.8 92 0.0031 17.6 4.1 25 17-41 12-36 (74)
89 2xdp_A Lysine-specific demethy 26.3 92 0.0032 19.5 3.9 24 16-39 66-89 (123)
90 4fln_A Protease DO-like 2, chl 25.0 73 0.0025 24.6 3.8 30 19-48 97-127 (539)
91 3uep_A YSCQ-C, type III secret 24.9 1E+02 0.0034 18.1 3.7 34 16-49 51-84 (96)
92 2w5e_A Putative serine proteas 23.2 1.5E+02 0.0051 18.8 4.8 26 19-46 43-68 (163)
93 2vpu_A TET3, 354AA long hypoth 23.0 72 0.0025 23.0 3.3 22 14-36 99-120 (354)
94 3mkv_A Putative amidohydrolase 22.4 1.4E+02 0.0047 19.3 4.4 38 43-80 5-43 (426)
95 3dgp_B RNA polymerase II trans 21.8 32 0.0011 19.7 0.9 13 29-41 2-14 (71)
96 3qii_A PHD finger protein 20; 21.6 1.3E+02 0.0046 17.6 4.0 26 16-41 23-48 (85)
97 3qx1_A FAS-associated factor 1 21.4 84 0.0029 17.5 2.8 22 19-40 8-29 (84)
98 2wr8_A Putative uncharacterize 20.4 97 0.0033 21.7 3.4 19 28-46 171-189 (259)
No 1
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=100.00 E-value=1.5e-32 Score=169.78 Aligned_cols=86 Identities=77% Similarity=1.226 Sum_probs=71.6
Q ss_pred CCCCCCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCCC
Q psy6372 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEG 80 (88)
Q Consensus 1 m~~~~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~~ 80 (88)
|| .|..|++||++++|++|+|+|+||+.|+|+|.+||+|||++|+||.+..+++..+.++.++|||++|+||.++|++
T Consensus 1 ms--~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 1 MS--LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp ----CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CC--cCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 55 5889999999999999999999999999999999999999999999988887789999999999999999999999
Q ss_pred CccccccC
Q psy6372 81 DEEGEMRE 88 (88)
Q Consensus 81 ~~~~~~~~ 88 (88)
+++|+|||
T Consensus 79 ~~~~~~~~ 86 (86)
T 3s6n_F 79 EEDGEMRE 86 (86)
T ss_dssp --------
T ss_pred cccccccC
Confidence 99999997
No 2
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.95 E-value=6.7e-27 Score=141.07 Aligned_cols=75 Identities=35% Similarity=0.507 Sum_probs=69.6
Q ss_pred CCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCCCC
Q psy6372 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGD 81 (88)
Q Consensus 7 ~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~~~ 81 (88)
..|+++|++++|++|+|+|+||+.|+|+|.+||+|||++|+||.++..+...+.++.++|||++|++|.++|+.|
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~~ 77 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGGE 77 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC---
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCCC
Confidence 479999999999999999999999999999999999999999999988888899999999999999999998753
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.94 E-value=6.9e-27 Score=141.00 Aligned_cols=73 Identities=25% Similarity=0.398 Sum_probs=68.3
Q ss_pred CCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCC
Q psy6372 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78 (88)
Q Consensus 6 ~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d 78 (88)
...|++||++++|++|+|+|++|++|+|+|.+||+|||++|+||+++..++..++++.+||||++|+||++||
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 3679999999999999999999999999999999999999999999965556899999999999999999997
No 4
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.94 E-value=1.1e-26 Score=139.66 Aligned_cols=73 Identities=34% Similarity=0.493 Sum_probs=68.6
Q ss_pred CCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 7 ~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
..|+++|++++|++|+|+|+||+.|+|+|.+||+|||++|+||.++..+...+.+|.++|||++|++|.++||
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 4799999999999999999999999999999999999999999999888888999999999999999999875
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.94 E-value=1.1e-26 Score=141.66 Aligned_cols=77 Identities=31% Similarity=0.372 Sum_probs=70.7
Q ss_pred CCCCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 3 ~~~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
+..+..|+++|++++|++|+|+|+||+.|+|+|.+||+|||++|+||.|+..+...+.+|.++|||++|++|.++|+
T Consensus 4 ~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 4 NFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp CTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred cccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 44468899999999999999999999999999999999999999999999777778999999999999999999874
No 6
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.94 E-value=9.9e-27 Score=140.08 Aligned_cols=73 Identities=44% Similarity=0.773 Sum_probs=68.5
Q ss_pred CCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 7 ~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
..|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||.+..+++..+++|.++|||++|+||++.|+
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 75 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD 75 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC--
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecCC
Confidence 6899999999999999999999999999999999999999999999888788999999999999999998764
No 7
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.94 E-value=3.3e-26 Score=138.18 Aligned_cols=73 Identities=29% Similarity=0.437 Sum_probs=68.6
Q ss_pred CCcHHHHhhcCCCEEEEEEcCc-cEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 7 CNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 7 ~~p~~~L~~~i~k~V~V~L~~g-~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
..|+++|++++|++|+|+|++| ++|+|+|.+||+|||++|+||.|+..++..+.+|.++|||++|++|.++|+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 3799999999999999999999 999999999999999999999999888889999999999999999999885
No 8
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.94 E-value=2.4e-26 Score=140.19 Aligned_cols=74 Identities=32% Similarity=0.351 Sum_probs=68.3
Q ss_pred CCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 5 ~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
.+..|+.+|.+++|++|+|+|+||+.|.|+|.+||+|||++|+||.|+ ++...+.++.++|||++|++|.++|.
T Consensus 8 ~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~dg 81 (81)
T 1i8f_A 8 CFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVPG 81 (81)
T ss_dssp --CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC-
T ss_pred cccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCCC
Confidence 468999999999999999999999999999999999999999999999 66678999999999999999998873
No 9
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.93 E-value=3.2e-26 Score=146.14 Aligned_cols=80 Identities=34% Similarity=0.471 Sum_probs=56.0
Q ss_pred CCCCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEe-cCeeeeeeceEEEeCCcEEEEEcCCCCC
Q psy6372 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRCNNILYIRGAEEGD 81 (88)
Q Consensus 3 ~~~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~~~~v~IrG~~I~~I~~~d~~~ 81 (88)
|.-|..|+.||++++|++|+|+|++|++|+|+|.+||+|||++|+||++.. +++..+.++.++|||++|+||.+||+..
T Consensus 11 ~~~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~ 90 (105)
T 4emh_A 11 SQDPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVL 90 (105)
T ss_dssp ---------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC-----
T ss_pred cCCCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHh
Confidence 456889999999999999999999999999999999999999999999984 5556889999999999999999999876
Q ss_pred c
Q psy6372 82 E 82 (88)
Q Consensus 82 ~ 82 (88)
+
T Consensus 91 d 91 (105)
T 4emh_A 91 S 91 (105)
T ss_dssp -
T ss_pred h
Confidence 4
No 10
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.93 E-value=4.5e-26 Score=142.60 Aligned_cols=77 Identities=52% Similarity=0.861 Sum_probs=64.5
Q ss_pred CCCCCCcHHHHhhcCCCEEEEEEcCc-cEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 3 TPLPCNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 3 ~~~~~~p~~~L~~~i~k~V~V~L~~g-~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
...+..|+++|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++.+++..+.+|.++|||++|+||.++++
T Consensus 16 ~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~~ 93 (93)
T 1n9r_A 16 AMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELPN 93 (93)
T ss_dssp ----------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECCC
T ss_pred ccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCCC
Confidence 45678899999999999999999999 999999999999999999999999888888999999999999999998874
No 11
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.93 E-value=2.8e-25 Score=136.05 Aligned_cols=73 Identities=41% Similarity=0.490 Sum_probs=69.1
Q ss_pred CCCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEc
Q psy6372 4 PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 76 (88)
Q Consensus 4 ~~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~ 76 (88)
.++..|+.+|++++|++|+|+|+||+.|+|+|.+||+|||++|+||.|+..+...+.+|.++|||++|++|++
T Consensus 11 ~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 11 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp CCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred ccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 4567899999999999999999999999999999999999999999999888889999999999999999974
No 12
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.92 E-value=2.2e-25 Score=134.52 Aligned_cols=71 Identities=28% Similarity=0.398 Sum_probs=53.5
Q ss_pred cHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 9 p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
|.++|++++|++|+|+|+||+.|+|+|.+||+|||++|+||.|+..++..+.+|.++|||++|++|++.|.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 67899999999999999999999999999999999999999998766678999999999999999998874
No 13
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-24 Score=136.91 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=67.2
Q ss_pred CCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEec-------CeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-------GHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 7 ~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~-------~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
..|+.+|.+++|++|+|+|++|+.|.|+|.+||+|||++|+||.|.+. +...+.+|.++|||++|++|.++++
T Consensus 9 ~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~ 88 (96)
T 3bw1_A 9 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSE 88 (96)
T ss_dssp CCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-
T ss_pred hhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCc
Confidence 579999999999999999999999999999999999999999999853 3467899999999999999999888
Q ss_pred CCcc
Q psy6372 80 GDEE 83 (88)
Q Consensus 80 ~~~~ 83 (88)
++|.
T Consensus 89 ~~d~ 92 (96)
T 3bw1_A 89 DDDG 92 (96)
T ss_dssp ----
T ss_pred cccc
Confidence 7553
No 14
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.92 E-value=1.7e-24 Score=135.73 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=67.1
Q ss_pred CCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEe-cCeeeeeeceEEEeCCcEEEEEcCC
Q psy6372 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRCNNILYIRGAE 78 (88)
Q Consensus 5 ~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~~~~v~IrG~~I~~I~~~d 78 (88)
....|+.+|.+++|++|+|+|++|+.|+|+|.+||+|||++|+||+|+. +++..+.+|.++|||++|++|.+..
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC
T ss_pred ccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCC
Confidence 3467999999999999999999999999999999999999999999997 6667899999999999999999653
No 15
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.92 E-value=1.2e-24 Score=142.66 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=70.2
Q ss_pred CCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCCCCc
Q psy6372 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 82 (88)
Q Consensus 6 ~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~~~~ 82 (88)
...|+.||++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+....+++.+||||++|+||++||+...
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~ 79 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKN 79 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSS
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccc
Confidence 36899999999999999999999999999999999999999999998644458899999999999999999987643
No 16
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.91 E-value=1.8e-24 Score=140.47 Aligned_cols=73 Identities=26% Similarity=0.292 Sum_probs=69.0
Q ss_pred CcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCCC
Q psy6372 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEG 80 (88)
Q Consensus 8 ~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~~ 80 (88)
.|+.||++++|++|+|+|+||++|.|+|.+||+|||++|+||+|+..+.....++.+||||++|+||.+||+-
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l 74 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSL 74 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEecccc
Confidence 5899999999999999999999999999999999999999999997666788999999999999999999873
No 17
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.91 E-value=3.8e-24 Score=133.73 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=65.4
Q ss_pred CC-CCCCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEec-----C--------eeeeeeceEEE
Q psy6372 1 MS-TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-----G--------HCTGKLGEVLI 66 (88)
Q Consensus 1 m~-~~~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----~--------~~~~~~~~v~I 66 (88)
|| +.....|+.+|+.++|++|+|+|++|+.|+|+|.+||+|||++|+||.|++. + ...+.+|.++|
T Consensus 1 m~~~~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~i 80 (93)
T 4emg_A 1 MESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFV 80 (93)
T ss_dssp --------CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEE
T ss_pred CCcccccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEE
Confidence 44 3456799999999999999999999999999999999999999999999853 2 24789999999
Q ss_pred eCCcEEEEEcCC
Q psy6372 67 RCNNILYIRGAE 78 (88)
Q Consensus 67 rG~~I~~I~~~d 78 (88)
||++|++|.+|-
T Consensus 81 RG~nVv~I~p~~ 92 (93)
T 4emg_A 81 RGDSVILIAPPR 92 (93)
T ss_dssp CGGGEEEEECCC
T ss_pred CCCeEEEEEecC
Confidence 999999999863
No 18
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.91 E-value=1.2e-24 Score=134.86 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEe----------cCeeeeeeceEEEeCCcEEEEE
Q psy6372 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----------DGHCTGKLGEVLIRCNNILYIR 75 (88)
Q Consensus 6 ~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~----------~~~~~~~~~~v~IrG~~I~~I~ 75 (88)
|.+|.++|.+++|++|+|+|+||+.|.|+|.+||+|||++|+||.|++ .+...+.+|.++|||++|++|.
T Consensus 2 ~~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~ 81 (91)
T 1d3b_B 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMT 81 (91)
T ss_dssp -----CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEE
T ss_pred CCChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEE
Confidence 457889999999999999999999999999999999999999999964 2346889999999999999999
Q ss_pred cCCCCCc
Q psy6372 76 GAEEGDE 82 (88)
Q Consensus 76 ~~d~~~~ 82 (88)
+++....
T Consensus 82 ~~~~~~~ 88 (91)
T 1d3b_B 82 VEGPPPK 88 (91)
T ss_dssp EEECCC-
T ss_pred cCCCCCC
Confidence 8876654
No 19
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.90 E-value=3.8e-24 Score=139.19 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=68.2
Q ss_pred CCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEec----------Cee-----eeeeceEEEeCC
Q psy6372 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID----------GHC-----TGKLGEVLIRCN 69 (88)
Q Consensus 5 ~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~----------~~~-----~~~~~~v~IrG~ 69 (88)
....|+.+|.++++++|+|+|++|+.|.|+|.+||+||||+|+||+|++. +.. .+.+|+++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 55799999999999999999999999999999999999999999999862 323 688999999999
Q ss_pred cEEEEEcCCCCCc
Q psy6372 70 NILYIRGAEEGDE 82 (88)
Q Consensus 70 ~I~~I~~~d~~~~ 82 (88)
+|++|.+.++.++
T Consensus 105 nVv~I~~~~~~~~ 117 (121)
T 2fwk_A 105 NVAMLVPGGDPDS 117 (121)
T ss_dssp GEEEEESSSCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999998877654
No 20
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.90 E-value=5.5e-24 Score=132.94 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=67.9
Q ss_pred CCCCCcHHHHhhcCCCEEEEEE----cCccEEEEEEEEecCCcceEEcceEEEe-cCeeeeeeceEEEeCCcEEEEEcCC
Q psy6372 4 PLPCNPKPFLNLLTGKSVICKL----KWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRCNNILYIRGAE 78 (88)
Q Consensus 4 ~~~~~p~~~L~~~i~k~V~V~L----~~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~~~~v~IrG~~I~~I~~~d 78 (88)
+.+..|+++|.++++++|+|++ ++|++|.|+|.+||+|||++|+||.|.. +++..+.+|.++|||++|++|.++|
T Consensus 12 ~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 12 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp --CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred eeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 3478899999999999999999 9999999999999999999999999985 4556889999999999999999876
Q ss_pred C
Q psy6372 79 E 79 (88)
Q Consensus 79 ~ 79 (88)
+
T Consensus 92 ~ 92 (92)
T 3s6n_E 92 N 92 (92)
T ss_dssp -
T ss_pred C
Confidence 3
No 21
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.90 E-value=2.5e-23 Score=134.12 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=57.5
Q ss_pred CCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecC-------eeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG-------HCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 7 ~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
..|...|.+++|++|+|+|++|+.|.|+|.+||+||||+|+||.|++.+ ...+.+|.++|||++|++|.++|.
T Consensus 22 ke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 22 KESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ----------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred cchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 3466789999999999999999999999999999999999999998532 357899999999999999999987
Q ss_pred CCc
Q psy6372 80 GDE 82 (88)
Q Consensus 80 ~~~ 82 (88)
.+|
T Consensus 102 ~ee 104 (113)
T 4emk_C 102 SEE 104 (113)
T ss_dssp ---
T ss_pred ccc
Confidence 775
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.87 E-value=4.9e-22 Score=128.66 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCCcHHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecC--------------eeeeeeceEEEeCC
Q psy6372 6 PCNPKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG--------------HCTGKLGEVLIRCN 69 (88)
Q Consensus 6 ~~~p~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~~~~v~IrG~ 69 (88)
...|+++|..++ +++|+|+|++|+.|.|+|.+||+|||++|+||.|++.. ...+.+|.+||||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 458999999999 59999999999999999999999999999999987421 01457999999999
Q ss_pred cEEEEEcCCCC
Q psy6372 70 NILYIRGAEEG 80 (88)
Q Consensus 70 ~I~~I~~~d~~ 80 (88)
+|++|.+++..
T Consensus 105 nVv~I~~~~~~ 115 (118)
T 1b34_B 105 SVIVVLRNPLI 115 (118)
T ss_dssp GEEEEEECCCC
T ss_pred EEEEEEeCchh
Confidence 99999988763
No 23
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.85 E-value=4.3e-21 Score=136.19 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=66.1
Q ss_pred CCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEec----------CeeeeeeceEEEeCCcEEEEEc
Q psy6372 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID----------GHCTGKLGEVLIRCNNILYIRG 76 (88)
Q Consensus 7 ~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~----------~~~~~~~~~v~IrG~~I~~I~~ 76 (88)
.++..+|++++||+|+|+|+|||+|.|+|.+||+||||+|+||+|++. +++.++++++||||++|++|.+
T Consensus 3 v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isv 82 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82 (231)
T ss_pred cCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEe
Confidence 467899999999999999999999999999999999999999999752 2468899999999999999997
Q ss_pred CCC
Q psy6372 77 AEE 79 (88)
Q Consensus 77 ~d~ 79 (88)
.+.
T Consensus 83 e~p 85 (231)
T 3pgw_B 83 EGP 85 (231)
T ss_pred cCC
Confidence 654
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.85 E-value=3.3e-21 Score=126.89 Aligned_cols=70 Identities=30% Similarity=0.350 Sum_probs=64.1
Q ss_pred HHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCCCCcc
Q psy6372 10 KPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDEE 83 (88)
Q Consensus 10 ~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~~~~~ 83 (88)
.++|++++|++|+|+|+||+.|+|+|.+||+|||++|+||.+. . .+.+|.++|||++|++|.++|+..+-
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~-~---~~~lg~v~IRG~nI~~I~~~d~~~d~ 71 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNK-A---GEKFNRVFIMYRYIVHIDSTERRIDM 71 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECT-T---CCEEEEEEECGGGEEEEEECCCCCCH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEE-c---CCEeceEEEeCCeEEEEEcCCcccCH
Confidence 4689999999999999999999999999999999999999987 2 36889999999999999999987543
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.23 E-value=2.7e-11 Score=74.54 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=59.2
Q ss_pred CcHHHHhhcCCCEEEEEEcCccEEEEEEEEec-CCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCCCCcc
Q psy6372 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDEE 83 (88)
Q Consensus 8 ~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~~~~~ 83 (88)
.|. .|++++||.|.|+|.||++|+|.|.+|| ...|++|.|+. . ...+..++|.|..|..|.+.++.++.
T Consensus 8 ~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~---~---~~~~~~~iI~G~aI~eI~v~~~~~~~ 77 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFL---E---DGSMSVTGIMGHAVQTVETMNEGDHR 77 (86)
T ss_dssp CHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEEC---T---TSCEEEEEECGGGEEEEEEEECCCHH
T ss_pred CHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeecc---c---CCeEEEEEEecceEEEEEEecchhHH
Confidence 444 7899999999999999999999999999 88999999992 2 24457899999999999887776654
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.35 E-value=0.002 Score=39.38 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=54.3
Q ss_pred hcCCCEEEEEEcCccEEEEEEEEec-CCcceEEcceEEE-ecC--------eeeeeeceEEEeCCcEEEEEcCCCC
Q psy6372 15 LLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEI-IDG--------HCTGKLGEVLIRCNNILYIRGAEEG 80 (88)
Q Consensus 15 ~~i~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~d~~e~-~~~--------~~~~~~~~v~IrG~~I~~I~~~d~~ 80 (88)
.++|++|.+..+.+-.|.|+|..+| +..-+.|.|+..+ .+| ....-++.+..||+.|.-+.+-+..
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~~ 85 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNNH 85 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEeccC
Confidence 4799999999999999999999999 5678999999875 221 1344678999999999999877654
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.35 E-value=0.0004 Score=41.26 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=44.5
Q ss_pred cHHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCC
Q psy6372 9 PKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78 (88)
Q Consensus 9 p~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d 78 (88)
=-.||+.+. +.+|+|.|.||..++|++.+||+|+ +.|++. ...+|.=..|.+|.+..
T Consensus 10 Qd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~~------------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 10 QDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKNT------------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEESS------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEECC------------ceEEEEeeeEEEEeEcc
Confidence 356888887 7899999999999999999999998 444421 24577777788877654
No 28
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.27 E-value=0.00054 Score=41.49 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=31.7
Q ss_pred HHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceEEc
Q psy6372 10 KPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLA 47 (88)
Q Consensus 10 ~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~ 47 (88)
-.||+.+. +.+|+|-|.||..++|.+.+||+|+ +.|+
T Consensus 9 d~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~ 47 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 47 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceE-EEEe
Confidence 46788775 7889999999999999999999999 4444
No 29
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.27 E-value=0.00056 Score=41.13 Aligned_cols=65 Identities=26% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCCCCCCcHHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCC
Q psy6372 1 MSTPLPCNPKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 78 (88)
Q Consensus 1 m~~~~~~~p~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d 78 (88)
|+++....--.||..+. ..+|+|.|.||..++|++.+||+|+ +.|+ +++ ..+|.=..|.+|.+..
T Consensus 1 m~~~~~nlQd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~-VlL~------~g~------~qLIYKhAISTI~P~~ 67 (79)
T 3sb2_A 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYV-VLLR------NTV------TQMVYKHAISTVVPAR 67 (79)
T ss_dssp -----CTTHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE------SSS------EEEEEGGGEEEEEESS
T ss_pred CCccccchHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEE------CCc------eEEEEeeeEEEEeecC
Confidence 55554444467888885 5669999999999999999999998 4443 232 3466677777776543
No 30
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.18 E-value=0.00054 Score=41.12 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=31.5
Q ss_pred HHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceE
Q psy6372 10 KPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQ 45 (88)
Q Consensus 10 ~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlv 45 (88)
-.||+.+. +.+|+|-|.||..++|.+.+||+|+=+.
T Consensus 13 d~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL 50 (78)
T 3ahu_A 13 DQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLL 50 (78)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 46888886 8899999999999999999999998443
No 31
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.09 E-value=0.00065 Score=42.78 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=31.7
Q ss_pred cHHHHhhcCC--CEEEEEEcCccEEEEEEEEecCCcceEEc
Q psy6372 9 PKPFLNLLTG--KSVICKLKWGHEYKGILVSTDGYMNCQLA 47 (88)
Q Consensus 9 p~~~L~~~i~--k~V~V~L~~g~~~~G~L~~~D~~mNlvL~ 47 (88)
=-.||+.+.. .+|+|.|.||..++|++.+||+|+ +.|+
T Consensus 10 Qd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~-VlL~ 49 (104)
T 2y90_A 10 QDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 49 (104)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 3468888864 489999999999999999999998 4444
No 32
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=97.08 E-value=0.0021 Score=37.79 Aligned_cols=65 Identities=25% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCCCCCCCc-HHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEc
Q psy6372 1 MSTPLPCNP-KPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 76 (88)
Q Consensus 1 m~~~~~~~p-~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~ 76 (88)
|+.--+..| ...|+.++ ..+|.|+|.+|..+.|++..+|+++ +.|.+.. + ...+|.-..|.||.+
T Consensus 1 m~~fdt~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c-l~L~~~~----~------~~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 1 MSRFDSGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG-LGLVDDS----E------RSTIVRLAAIAYITP 68 (70)
T ss_dssp ----CCSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEECTT----C------CEEEEEGGGEEEEEE
T ss_pred CCcccCCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE-EEEEcCC----C------CeEEEEeeeeEEEee
Confidence 666667777 46788886 6889999999999999999999998 4443321 1 234677777777764
No 33
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=96.98 E-value=0.0035 Score=36.98 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=44.1
Q ss_pred CCCCCCCCc-HHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEc
Q psy6372 1 MSTPLPCNP-KPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 76 (88)
Q Consensus 1 m~~~~~~~p-~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~ 76 (88)
||.--+..| ...|+.++ .++|.|+|.+|..+.|++.-+|+++ +.|.+... ..++|.-..|.||.+
T Consensus 3 ~~~fdt~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~~~----------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 3 ITEFDTSLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIADENS----------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp ------CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC-------------CEEEEEGGGEEEEEE
T ss_pred ccccCCCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEcCCC----------CeEEEEeeeeEEEEe
Confidence 444445556 46788886 5779999999999999999999998 44443321 246777888888865
No 34
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.96 E-value=0.0055 Score=36.53 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.5
Q ss_pred HHHHhhcC--CCEEEEEEcCccEEEEEEEEecCCcceE
Q psy6372 10 KPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQ 45 (88)
Q Consensus 10 ~~~L~~~i--~k~V~V~L~~g~~~~G~L~~~D~~mNlv 45 (88)
-.||+.+. +.+|+|.|.||-.++|++.+||+|+=+.
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL 46 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSL 46 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 35888887 8899999999999999999999998443
No 35
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.88 E-value=0.0027 Score=41.08 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=43.0
Q ss_pred HhhcCCCEEEEEEcCccEEEEEEEEecCCcceEE--cceEEEecCeeeeeeceEEEeCCcEEEEEcCCCC
Q psy6372 13 LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQL--ASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEG 80 (88)
Q Consensus 13 L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL--~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~~ 80 (88)
+..++|..|.|+|++|..++|++..+|.. +|+| ++|.... .-|+...|.-+.+.+-.
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~~s~----------~~I~asdI~DLkVl~~~ 65 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLANDST----------KSIVTKDIKDLRILPKN 65 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEETTTEE----------EEEEGGGEEEEEECCSC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEecccccccc----------ceeecccccceeeeecc
Confidence 46789999999999999999999999844 4666 8885321 16777777766655443
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.79 E-value=0.0037 Score=38.68 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=52.6
Q ss_pred cHHHHhhcCCCEEEEEEcCccEEEEEEEEec-CCcceEEcceEEE-ecC--------eeeeeeceEEEeCCcEEEEEcCC
Q psy6372 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEI-IDG--------HCTGKLGEVLIRCNNILYIRGAE 78 (88)
Q Consensus 9 p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~d~~e~-~~~--------~~~~~~~~v~IrG~~I~~I~~~d 78 (88)
|..--..++|++|.+..+.+-.|.|+|..+| +..-+.|.|+..+ .+| ....-++.+..||+.|.-+.+-+
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 3444567899999999999999999999999 5678999998864 221 13446789999999999887643
No 37
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.70 E-value=0.0081 Score=36.38 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=51.5
Q ss_pred hhcCCCEEEEEEcCcc-EEEEEEEEecCC-cceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcCCC
Q psy6372 14 NLLTGKSVICKLKWGH-EYKGILVSTDGY-MNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 14 ~~~i~k~V~V~L~~g~-~~~G~L~~~D~~-mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
.+++|+.|.++-+++- .|+|.|..+|.. -||.|.++. .+|- +.....|.+++.-|.-+.+.+-
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f--~NG~-~~~s~eVtls~~DI~~L~ii~~ 69 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF--HNGV-KCLVPEVTFRAGDITELKILEI 69 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE--ETTE-ECSSSEEEEEGGGCSEEEEEEC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh--hCCC-CCCCcEEEEEecChhheEEEec
Confidence 4689999999999998 999999999965 789999994 4664 4555779999998877765443
No 38
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.34 E-value=0.009 Score=35.12 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.0
Q ss_pred HHhhc--CCCEEEEEEcCccEEEEEEEEecCCcceE
Q psy6372 12 FLNLL--TGKSVICKLKWGHEYKGILVSTDGYMNCQ 45 (88)
Q Consensus 12 ~L~~~--i~k~V~V~L~~g~~~~G~L~~~D~~mNlv 45 (88)
||+.+ -+.+|+|-|.||..++|.+.+||+|+=+.
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 44444 46789999999999999999999998443
No 39
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.26 E-value=0.023 Score=34.41 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=49.3
Q ss_pred HHHHhhcCCCEEEEEEcCccEEEEEEEEec-CCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEcC
Q psy6372 10 KPFLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGA 77 (88)
Q Consensus 10 ~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~~ 77 (88)
+.+|..+.|++|.+.+.++.+..|++.++| ...|+..++-+ +.=| .++.-.+|+.-|.++...
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-TPiG----v~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-TPIG----VQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-CTTC----CEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-CCcc----cchhhhhhcCCEEEEEec
Confidence 457788899999999999999999999999 55777655544 2112 356789999999988753
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=96.24 E-value=0.035 Score=32.12 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=43.1
Q ss_pred HHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeCCcEEEEEc
Q psy6372 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 76 (88)
Q Consensus 11 ~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG~~I~~I~~ 76 (88)
..|....|++|-+.......++|+|..||.-. +.|+|++... |+ +-..++++=+.|-.|.+
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~-GN---k~k~liv~idDinWimL 69 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI-GN---RGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT-EE---EEEEEEEEGGGEEEEEE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh-cc---ccceeEEEeccceEEEe
Confidence 57888899999999999999999999999987 7889999762 22 22355666666655544
No 41
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=93.41 E-value=0.06 Score=35.77 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCCCCCcHH---HHhhcCCCEEEEEE----cCccEEEEEEEEecCCcceEE
Q psy6372 2 STPLPCNPKP---FLNLLTGKSVICKL----KWGHEYKGILVSTDGYMNCQL 46 (88)
Q Consensus 2 ~~~~~~~p~~---~L~~~i~k~V~V~L----~~g~~~~G~L~~~D~~mNlvL 46 (88)
||+...-|+. -+..++|+.|.|+| .+.+.++|+|.++|+.. ++|
T Consensus 85 SSPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l 135 (164)
T 1ib8_A 85 TSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 135 (164)
T ss_dssp ECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred eCCCCCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCCE-EEE
Confidence 6676677764 45577999999999 34599999999999753 444
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=92.30 E-value=0.29 Score=34.62 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=30.4
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
.+|++|++.+.+|..+.|+..++|+...|+++..
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 3699999999889999999999999999998654
No 43
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=89.56 E-value=0.21 Score=30.03 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=30.3
Q ss_pred CCCCCCCCcHH-------HHhhcCCCEEEEEEcCccEEEEEEEEe
Q psy6372 1 MSTPLPCNPKP-------FLNLLTGKSVICKLKWGHEYKGILVST 38 (88)
Q Consensus 1 m~~~~~~~p~~-------~L~~~i~k~V~V~L~~g~~~~G~L~~~ 38 (88)
||...+..|.. .+....+.+++|+|+||..+.|+....
T Consensus 1 m~~~~~Y~pI~Cd~yD~LElAc~~~~~l~l~l~dGe~~~g~a~D~ 45 (86)
T 1sg5_A 1 MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDL 45 (86)
T ss_dssp CCCCCCCCSSCCSSHHHHHHHHTTTTCEEEECTTTCCEEESSCEE
T ss_pred CCCCCCceeechhhhhHHHHHHHcCCeEEEEEeCCCEEEEEEEee
Confidence 77778888863 556678999999999999999965543
No 44
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=89.45 E-value=0.89 Score=32.56 Aligned_cols=48 Identities=19% Similarity=0.040 Sum_probs=34.7
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeC
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG 68 (88)
..|++|++...+ ..+.|+..++|+...|+++.... ......|.|.+|+
T Consensus 271 ~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~~g----~~~~~~Gev~~r~ 318 (321)
T 1bia_A 271 FINRPVKLIIGD-KEIFGISRGIDKQGALLLEQDGI----IKPWMGGEISLRS 318 (321)
T ss_dssp TTTSEEEEEETT-EEEEEEEEEECTTSCEEEEETTE----EEEESSCEEEEC-
T ss_pred hcCCEEEEEECC-cEEEEEEEEECCCCeEEEEECCC----EEEEEeeeEEEec
Confidence 379999998764 57999999999999999864321 1234446676664
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=89.41 E-value=0.32 Score=33.53 Aligned_cols=47 Identities=19% Similarity=0.041 Sum_probs=33.8
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCCcceEEcceEEEecCeeeeeeceEEEeC
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 68 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~~v~IrG 68 (88)
.+|++|++...++ +.|+..++|+...|+++.... ......|.|.+|+
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G----~~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEG----IKEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEETTE----EEEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEECCC----eEEEEEeEEEEec
Confidence 3799999987655 999999999999999864321 1233446677664
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=88.36 E-value=1.4 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.004 Sum_probs=28.4
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
.+|++|++...++..+.|+..++|+...|+ +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 379999999988877999999999999998 53
No 47
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=86.49 E-value=1.1 Score=25.99 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCCCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 3 TPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 3 ~~~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
+..|..|..-..--+|..|.++-.||+.|-|+++.....
T Consensus 4 ~pp~~a~~pa~~~~~geDVL~rw~DG~fYLGtIVd~~~~ 42 (69)
T 2xk0_A 4 APPVAAPSPAVTYALQEDVFIKCNDGRFYLGTIIDQTSD 42 (69)
T ss_dssp SCSSSSSCCCCCCCTTCEEEEECTTSCEEEEEEEEECSS
T ss_pred CCCCCCCCcccccccCCeEEEEecCCCEEEEEEEecCCc
Confidence 344445544444457999999999999999999666543
No 48
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=86.34 E-value=4.2 Score=25.09 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=48.7
Q ss_pred hhcCCCEEEEEEcCcc-EEEEEEEEecCCcceEEcceEEEecCe-eeeeeceEEEeCCcEEEEEcCC
Q psy6372 14 NLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGH-CTGKLGEVLIRCNNILYIRGAE 78 (88)
Q Consensus 14 ~~~i~k~V~V~L~~g~-~~~G~L~~~D~~mNlvL~d~~e~~~~~-~~~~~~~v~IrG~~I~~I~~~d 78 (88)
.+++|+.|.|.-.+.- .|+|.+..+|+ -+++|.++.. +|- -+.....|.++..-|..+.+.+
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr--NGiplk~~~~EVtLsa~DI~~L~IIe 71 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR--NGVPLRKQNAEVVLKCTDIRSIDLIE 71 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE--TTEECSCSSSCEEEETTTEEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh--cCcCcCCCCceEEEEecchhheeeec
Confidence 3789999999999986 99999999996 4499998875 342 1345678899999888775543
No 49
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=81.01 E-value=1.9 Score=26.35 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=16.5
Q ss_pred CCEEEEEEcCccEEEEEE
Q psy6372 18 GKSVICKLKWGHEYKGIL 35 (88)
Q Consensus 18 ~k~V~V~L~~g~~~~G~L 35 (88)
..+|+++|.+|+.+.||+
T Consensus 28 q~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTV 45 (101)
T ss_dssp TCEEEEEETTSCEEEEEE
T ss_pred eeEEEEEEcCCCeEeeee
Confidence 368999999999999997
No 50
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=78.06 E-value=1.8 Score=29.84 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 17 i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
+|++|++...++ +.|+..++|+...|+++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998776 999999999999999865
No 51
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=74.82 E-value=4.1 Score=25.77 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.9
Q ss_pred cCCCEEEEEEcCccEEEEEEEEec
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTD 39 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D 39 (88)
.+|.+|..+-+||+.|+|++.+..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 379999999999999999998876
No 52
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=74.15 E-value=4.2 Score=29.25 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=26.9
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
.+|++|++... +..+.|+..++|+...|++++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 47999999865 568999999999999999863
No 53
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=73.29 E-value=6.6 Score=21.90 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 17 TGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 17 i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
.|..|.+.-.||+.|-||+..+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 5889999999999999999999865
No 54
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=72.48 E-value=5.6 Score=27.07 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.5
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
.+|++|++ +| +.|+..++|+...|.++.
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 37999999 45 999999999999999864
No 55
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=65.52 E-value=3.3 Score=25.69 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCCCCCCcHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEc
Q psy6372 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA 47 (88)
Q Consensus 1 m~~~~~~~p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~ 47 (88)
|++..|-.--+.|++++|++|++. |++.+++. .-++|.
T Consensus 1 m~~~tpRVn~~~L~~~~g~~Vriv--------GkV~~~~g-~~~~l~ 38 (114)
T 4gop_A 1 MEKPTPLINSSMLGQYVGQTVRIV--------GKVHKVTG-NTLLMQ 38 (114)
T ss_dssp CCCCCCEECTTTGGGGTTSEEEEE--------EEEEEEET-TEEEEE
T ss_pred CCCCCceECHHHHHhhCCCeEEEE--------EEEeeeCC-CEEEEE
Confidence 888888888899999999999864 66777776 334443
No 56
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=64.86 E-value=12 Score=21.33 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 17 TGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 17 i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
+|..|+..-.||+.|-|++..++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 6889999999999999999999974
No 57
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=61.95 E-value=2.9 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=20.1
Q ss_pred CCCCCCCCcHHHHhhcCCCEEEEEE
Q psy6372 1 MSTPLPCNPKPFLNLLTGKSVICKL 25 (88)
Q Consensus 1 m~~~~~~~p~~~L~~~i~k~V~V~L 25 (88)
||+..|-.--+.|.+++||+|++.-
T Consensus 26 m~~~~pRVN~s~L~~fvGk~VriVG 50 (142)
T 2pi2_E 26 MDLPRSRINAGMLAQFIDKPVCFVG 50 (142)
T ss_dssp GGSCCEEECGGGGGGSTTCEEEEEE
T ss_pred ccCCcceECHHHHHhhCCCEEEEEE
Confidence 5666666777999999999998753
No 58
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=59.90 E-value=3.4 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.4
Q ss_pred CCCCCCCCcHHHHhhcCCCEEEEE
Q psy6372 1 MSTPLPCNPKPFLNLLTGKSVICK 24 (88)
Q Consensus 1 m~~~~~~~p~~~L~~~i~k~V~V~ 24 (88)
|++..|-.--+.|.+++||+|++.
T Consensus 5 m~~p~pRVn~s~L~~fvgk~Vriv 28 (121)
T 3kdf_A 5 MDLPRSRINAGMLAQFIDKPVCFV 28 (121)
T ss_dssp GGSCCEEECGGGGGGGTTCEEEEE
T ss_pred ccCCcceECHHHHHhhCCCeEEEE
Confidence 667777777899999999999875
No 59
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=59.55 E-value=18 Score=21.73 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHhhcCCCEEEEEEcCcc----EEEEEEEEecCC
Q psy6372 11 PFLNLLTGKSVICKLKWGH----EYKGILVSTDGY 41 (88)
Q Consensus 11 ~~L~~~i~k~V~V~L~~g~----~~~G~L~~~D~~ 41 (88)
..|.+.+|++|.++.+.|| +-.|+|...=+.
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~etYPS 52 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVYPS 52 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEECSS
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEecCc
Confidence 4688899999999999994 678998876543
No 60
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.65 E-value=21 Score=20.44 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 17 TGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 17 i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
.|+.|...-.||..|-|++..+|.+
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5889999999999999999999964
No 61
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=53.19 E-value=7.4 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.375 Sum_probs=23.7
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
..|.-|.+.-+||+.|-|+++.+|..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 47999999999999999999999964
No 62
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=50.16 E-value=26 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.3
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.|.+.+|+.+.+++.+.|...+|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5799999999999999999999988877554
No 63
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=49.69 E-value=26 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.|.+.+|+.+.+++.++|...+|-+-..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999988876544
No 64
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=46.98 E-value=47 Score=20.24 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=40.2
Q ss_pred EEEEcCccEEEEEEEEecCCcceEEcceEEEec-----Ce----------eeeeeceEEEeCCcEEEEEcCCC
Q psy6372 22 ICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-----GH----------CTGKLGEVLIRCNNILYIRGAEE 79 (88)
Q Consensus 22 ~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----~~----------~~~~~~~v~IrG~~I~~I~~~d~ 79 (88)
.++|++|..+.|.+..-|+. +.++|+....+ |+ ....-+.++||-+.|.++.-+.+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 57899999999999976553 77888876531 11 11234678999999999986654
No 65
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=45.95 E-value=17 Score=26.27 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=20.4
Q ss_pred hhcCCCEEEEEEcCccEEEEEEEEe
Q psy6372 14 NLLTGKSVICKLKWGHEYKGILVST 38 (88)
Q Consensus 14 ~~~i~k~V~V~L~~g~~~~G~L~~~ 38 (88)
+.+.+++|+|.+++|+.+.|++-..
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCCEEEEEEeCc
Confidence 4568999999999999999998654
No 66
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.55 E-value=20 Score=20.21 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 17 TGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 17 i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
.|..|...-.||+.|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5889999999999999999999954
No 67
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=43.41 E-value=59 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=20.9
Q ss_pred CccEEEEEE---EEecCCcceEEcceEEEec
Q psy6372 27 WGHEYKGIL---VSTDGYMNCQLASTEEIID 54 (88)
Q Consensus 27 ~g~~~~G~L---~~~D~~mNlvL~d~~e~~~ 54 (88)
+...+.|.| ..||+.|.++|+|+....+
T Consensus 57 sk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 57 SKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred cCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 345566666 5689999999999997643
No 68
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=42.88 E-value=38 Score=23.36 Aligned_cols=34 Identities=26% Similarity=0.575 Sum_probs=28.6
Q ss_pred cHHHHhhcCCCEEEEEEcCccEEEEEEEEecCCc
Q psy6372 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYM 42 (88)
Q Consensus 9 p~~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~m 42 (88)
+..+=++++|+.+.-++.+|..+.|.++....|+
T Consensus 16 ~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 16 AVPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 3455578999999999999999999999988775
No 69
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=41.56 E-value=37 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=26.3
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.|.+.+|+.+.+++.++|....|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4688999999999999999999888766443
No 70
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=39.63 E-value=20 Score=24.45 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=19.7
Q ss_pred hcCCCEEEEEEcCccEEEEEEEE
Q psy6372 15 LLTGKSVICKLKWGHEYKGILVS 37 (88)
Q Consensus 15 ~~i~k~V~V~L~~g~~~~G~L~~ 37 (88)
..+|..|+|.+..|+.+.|++.+
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEECCCCCEEEEEEec
Confidence 35789999999999999998764
No 71
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.56 E-value=1.9 Score=26.53 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=16.9
Q ss_pred EEEEEEecCCcceEEcceE
Q psy6372 32 KGILVSTDGYMNCQLASTE 50 (88)
Q Consensus 32 ~G~L~~~D~~mNlvL~d~~ 50 (88)
.|++++||...|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4678999999999999887
No 72
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=37.55 E-value=41 Score=22.85 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=25.6
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
.++.|.+.+|+.+.+++...|....|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4689999999999999999999887766443
No 73
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=37.07 E-value=36 Score=25.31 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=26.7
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.|.+.+|+.+.+++.++|...+|-|-..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4689999999999999999999988876544
No 74
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=36.50 E-value=57 Score=21.61 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=25.7
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
..+.|.+.+|+.+.+++..+|....|-|-.
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~ 106 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLK 106 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEE
Confidence 578999999999999999999887776643
No 75
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=36.12 E-value=58 Score=21.60 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 18 GKSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 18 ~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
...+.|.+.+|+.+.+++..+|....|-|-..
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 36799999999999999999999877766433
No 76
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=36.01 E-value=51 Score=19.62 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=29.7
Q ss_pred HHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEE
Q psy6372 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQL 46 (88)
Q Consensus 11 ~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 46 (88)
+.-.-++||+|.-..++|+.+.|++..--.....+.
T Consensus 33 ~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvVr 68 (87)
T 3j21_c 33 EEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVR 68 (87)
T ss_dssp HHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSCEE
T ss_pred HHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeEE
Confidence 445678999999999999999999998777766663
No 77
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=33.92 E-value=61 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=26.1
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.|.+.+|+.+.+++.++|....|-|-..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 5789999999999999999998877766443
No 78
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=33.87 E-value=62 Score=22.49 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=26.1
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.|.+.+|+.+.+++..+|...+|-|-..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 4689999999999999999998888776443
No 79
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=32.27 E-value=61 Score=22.51 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=26.3
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.|.+.+|+.+.+++..+|...+|-|-..
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4899999999999999999998888776433
No 80
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=31.78 E-value=90 Score=19.11 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=20.7
Q ss_pred CccEEEEEE---EEecCCcceEEcceEEEec
Q psy6372 27 WGHEYKGIL---VSTDGYMNCQLASTEEIID 54 (88)
Q Consensus 27 ~g~~~~G~L---~~~D~~mNlvL~d~~e~~~ 54 (88)
+...+.|.| ..||+.+.+.|+|+.....
T Consensus 53 sk~sfKG~L~tYrfcDnVWTf~lkd~~fk~~ 83 (108)
T 1nvp_D 53 NRVNFRGSLNTYRFCDNVWTFVLNDVEFREV 83 (108)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred cCCeEeeccCCccccCcEEEEEEeceEEEec
Confidence 335556655 5789999999999997643
No 81
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=30.67 E-value=38 Score=24.24 Aligned_cols=23 Identities=13% Similarity=-0.001 Sum_probs=18.1
Q ss_pred hcCCCEEEEE-EcCccEEEEEEEE
Q psy6372 15 LLTGKSVICK-LKWGHEYKGILVS 37 (88)
Q Consensus 15 ~~i~k~V~V~-L~~g~~~~G~L~~ 37 (88)
...|..|+|. +.+|+.++|++.+
T Consensus 237 Ga~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 237 GYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp BCTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEEec
Confidence 4579999999 9999999999863
No 82
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=29.00 E-value=1e+02 Score=21.53 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=26.0
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
..+.|.+.+|+.+.+++..+|....|-|-.
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~ 99 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIK 99 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEE
Confidence 578999999999999999999888776643
No 83
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=28.83 E-value=43 Score=25.27 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHhhc---CCCEEEEEEcCc---cEEEEEEEE-ec----CCcceEEcc
Q psy6372 10 KPFLNLL---TGKSVICKLKWG---HEYKGILVS-TD----GYMNCQLAS 48 (88)
Q Consensus 10 ~~~L~~~---i~k~V~V~L~~g---~~~~G~L~~-~D----~~mNlvL~d 48 (88)
..+|.+. .|.+|+|+..+| ..|.|+|.- .. ++.=|.|+|
T Consensus 4 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (438)
T 1zq1_A 4 DEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLEN 53 (438)
T ss_dssp HHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETT
T ss_pred HHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccC
Confidence 3566655 499999999998 899999993 33 445455554
No 84
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=28.33 E-value=75 Score=23.49 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=22.4
Q ss_pred HhhcCCCEEEEEEcC----------c-cEEEEEEEEecC
Q psy6372 13 LNLLTGKSVICKLKW----------G-HEYKGILVSTDG 40 (88)
Q Consensus 13 L~~~i~k~V~V~L~~----------g-~~~~G~L~~~D~ 40 (88)
|..++|+++.|.+.. . +.+.|.+..+..
T Consensus 58 l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~~ 96 (491)
T 2p5z_X 58 PESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKH 96 (491)
T ss_dssp GGGTTTCEEEEEECC----------CCEEEEEEEEEEEE
T ss_pred HHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEEE
Confidence 467899999999942 2 789999988864
No 85
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=28.18 E-value=87 Score=17.80 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=25.5
Q ss_pred hcCCCEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 15 LLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 15 ~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
...+.+|.+...+-..++|.+..+++++=+.+.+
T Consensus 46 ~~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~ 79 (84)
T 1o9y_A 46 GISPGHATLCHGEQVVAEGELVDVEGRLGLQITR 79 (84)
T ss_dssp SSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEE
Confidence 4456788888888888888888888776665543
No 86
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=27.41 E-value=72 Score=19.27 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHhhcCCCEEEEEEcCccEEEEEEEEecCCcceEEc
Q psy6372 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLA 47 (88)
Q Consensus 11 ~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~ 47 (88)
+.-.-++||+|.-.-+.++.+.|++..-=.....+..
T Consensus 33 ~~a~fYlGKrvayvyka~rviwGKVtR~HGnsGvVrA 69 (95)
T 1sqr_A 33 EEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRA 69 (95)
T ss_dssp HHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEEE
T ss_pred HHHHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEEEE
Confidence 3456679999999999999999999988777666643
No 87
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=27.17 E-value=85 Score=22.17 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=25.8
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEEcc
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d 48 (88)
..+.|.+.+|+.+.+++.++|....|-|-.
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLk 106 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLR 106 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEE
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEE
Confidence 578999999999999999999887776643
No 88
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.78 E-value=92 Score=17.59 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 17 TGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 17 i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
+|..+...-.||.-|.+++.+++..
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 5888888888999999999999864
No 89
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=26.28 E-value=92 Score=19.53 Aligned_cols=24 Identities=21% Similarity=0.244 Sum_probs=21.3
Q ss_pred cCCCEEEEEEcCccEEEEEEEEec
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTD 39 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D 39 (88)
..|..|.|.-.+|..|.|++.+.-
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEeEEEeeee
Confidence 368899999999999999999874
No 90
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=25.00 E-value=73 Score=24.57 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=25.1
Q ss_pred CEEEEEEc-CccEEEEEEEEecCCcceEEcc
Q psy6372 19 KSVICKLK-WGHEYKGILVSTDGYMNCQLAS 48 (88)
Q Consensus 19 k~V~V~L~-~g~~~~G~L~~~D~~mNlvL~d 48 (88)
..|.|.+. +|+.|.+++.+.|....|-|-.
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 46888885 8999999999999988876643
No 91
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=24.89 E-value=1e+02 Score=18.15 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=25.3
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCCcceEEcce
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~ 49 (88)
..+.+|.|...+-..++|.+..+++++=+.+.+.
T Consensus 51 ~~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~i 84 (96)
T 3uep_A 51 PVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 84 (96)
T ss_dssp ESSCEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 3467777877777888888888888776666553
No 92
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=23.20 E-value=1.5e+02 Score=18.77 Aligned_cols=26 Identities=12% Similarity=-0.087 Sum_probs=21.0
Q ss_pred CEEEEEEcCccEEEEEEEEecCCcceEE
Q psy6372 19 KSVICKLKWGHEYKGILVSTDGYMNCQL 46 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~~mNlvL 46 (88)
..+.|.+ +|+.+..++. .|+...|-|
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAl 68 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAF 68 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEE
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEE
Confidence 5678888 9999999999 887666554
No 93
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=23.03 E-value=72 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=18.0
Q ss_pred hhcCCCEEEEEEcCccEEEEEEE
Q psy6372 14 NLLTGKSVICKLKWGHEYKGILV 36 (88)
Q Consensus 14 ~~~i~k~V~V~L~~g~~~~G~L~ 36 (88)
+.+.+++|+|.+++|. +.|++-
T Consensus 99 ~~~~~~~v~i~t~~g~-~~Gvi~ 120 (354)
T 2vpu_A 99 ETLVAQRIRFFTEKGE-RYGVVG 120 (354)
T ss_dssp GGGTTCEEEEEETTEE-EEEEEC
T ss_pred ccccCCEEEEEcCCCc-EEEEEc
Confidence 5678999999999997 459874
No 94
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=22.41 E-value=1.4e+02 Score=19.32 Aligned_cols=38 Identities=11% Similarity=-0.156 Sum_probs=24.7
Q ss_pred ceEEcceEEEec-CeeeeeeceEEEeCCcEEEEEcCCCC
Q psy6372 43 NCQLASTEEIID-GHCTGKLGEVLIRCNNILYIRGAEEG 80 (88)
Q Consensus 43 NlvL~d~~e~~~-~~~~~~~~~v~IrG~~I~~I~~~d~~ 80 (88)
.++|+|+..... +.....-..+.|++..|..|......
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~~~~ 43 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIK 43 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESSCCC
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCCCCC
Confidence 467888876522 22233335799999999999754433
No 95
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=21.81 E-value=32 Score=19.71 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=10.4
Q ss_pred cEEEEEEEEecCC
Q psy6372 29 HEYKGILVSTDGY 41 (88)
Q Consensus 29 ~~~~G~L~~~D~~ 41 (88)
+-++|.|..||+-
T Consensus 2 ~A~kGvLi~CDpa 14 (71)
T 3dgp_B 2 RARKGALVQCDPS 14 (71)
T ss_dssp EEEEEEEEECCHH
T ss_pred CceeEEEEEcCHH
Confidence 3578999999974
No 96
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=21.61 E-value=1.3e+02 Score=17.63 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=23.5
Q ss_pred cCCCEEEEEEcCccEEEEEEEEecCC
Q psy6372 16 LTGKSVICKLKWGHEYKGILVSTDGY 41 (88)
Q Consensus 16 ~i~k~V~V~L~~g~~~~G~L~~~D~~ 41 (88)
.+|.+|...-.|++.|-+++.+++..
T Consensus 23 ~vGd~VlArW~D~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 23 QINEQVLACWSDCRFYPAKVTAVNKD 48 (85)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT
T ss_pred ccCCEEEEEeCCCCEeeEEEEEECCC
Confidence 37999999999999999999999985
No 97
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=21.38 E-value=84 Score=17.54 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=17.9
Q ss_pred CEEEEEEcCccEEEEEEEEecC
Q psy6372 19 KSVICKLKWGHEYKGILVSTDG 40 (88)
Q Consensus 19 k~V~V~L~~g~~~~G~L~~~D~ 40 (88)
.+|.|.+.||+.+.+++..-|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 4789999999999998876543
No 98
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=20.38 E-value=97 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.7
Q ss_pred ccEEEEEEEEecCCcceEE
Q psy6372 28 GHEYKGILVSTDGYMNCQL 46 (88)
Q Consensus 28 g~~~~G~L~~~D~~mNlvL 46 (88)
+..++|.+.-+|.|-|+..
T Consensus 171 ~~~i~g~V~~iD~FGN~iT 189 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVIL 189 (259)
T ss_dssp TTEEEEEEEEECTTCCEEE
T ss_pred CCeEEEEEEEEcccCChhh
Confidence 5678999999999999974
Done!