RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6372
(88 letters)
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2
complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Length = 86
Score = 117 bits (294), Expect = 2e-36
Identities = 66/88 (75%), Positives = 72/88 (81%), Gaps = 2/88 (2%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS PL NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G
Sbjct: 1 MSLPL--NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGH 58
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
LGEVLIRCNN+LYIRG EE +E+GEMRE
Sbjct: 59 LGEVLIRCNNVLYIRGVEEEEEDGEMRE 86
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F;
heptamer, translation; 2.80A {Saccharomyces cerevisiae}
SCOP: b.38.1.1 PDB: 1n9s_A
Length = 93
Score = 112 bits (281), Expect = 2e-34
Identities = 41/80 (51%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKW-GHEYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
+S P NPKPFL L V KLK+ EY+G LVSTD Y N QL EE + G G
Sbjct: 14 ISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHG 73
Query: 60 KLGEVLIRCNNILYIRGAEE 79
LGE+ IRCNN+LYIR
Sbjct: 74 TLGEIFIRCNNVLYIRELPN 93
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_B
Length = 75
Score = 107 bits (270), Expect = 5e-33
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
+P FLN + GK V+ +L G +YKGIL DGYMN L TEE ++G T G+
Sbjct: 2 DSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAF 61
Query: 66 IRCNNILYIRGAEE 79
IR NN+LY+ ++
Sbjct: 62 IRGNNVLYVSALDD 75
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A
{Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Length = 75
Score = 100 bits (251), Expect = 5e-30
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P ++ K V+ LK G E++G L+ D ++N LA E I DG + G+++IR
Sbjct: 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIR 63
Query: 68 CNNILYIRGAEE 79
+N+L I EE
Sbjct: 64 GDNVLAISPTEE 75
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding
protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP:
b.38.1.1 PDB: 1i5l_A*
Length = 77
Score = 100 bits (250), Expect = 7e-30
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P P LN VI +LK G E++G L D +MN L EEI +G K+G V+
Sbjct: 2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVV 61
Query: 66 IRCNNILYIRGAEEG 80
IR + ++++ A G
Sbjct: 62 IRGDTVVFVSPAPGG 76
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA
decay, PRE-mRNA splicing, LSM proteins, RNA BI protein;
2.20A {Schizosaccharomyces pombe}
Length = 105
Score = 98.7 bits (246), Expect = 6e-29
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS-TEEIIDGHCTGK 60
+ P P LN G+ ++ +LK G + G L + D YMN L + DG +
Sbjct: 10 HSQDPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFR 69
Query: 61 LGEVLIRCNNILYIRGAEE 79
L E IR NNI Y+R +E
Sbjct: 70 LPECYIRGNNIKYLRIQDE 88
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein;
1.70A {Methanothermobacterthermautotrophicus} SCOP:
b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Length = 83
Score = 97.0 bits (242), Expect = 1e-28
Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL 61
P L VI KLK E++G+L S D +MN L EE+ DG T +L
Sbjct: 9 QRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRL 68
Query: 62 GEVLIRCNNILYI 74
G VLIR +NI+YI
Sbjct: 69 GTVLIRGDNIVYI 81
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein,
SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus
solfataricus} SCOP: b.38.1.1
Length = 81
Score = 93.9 bits (234), Expect = 3e-27
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
M+ L V+ KLK E +G+L S D +MN L+ +EEI K
Sbjct: 3 MNFL-AETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKK 61
Query: 61 LGEVLIRCNNILYIRGAE 78
LG ++IR +N++ I +
Sbjct: 62 LGTIVIRGDNVILISPLQ 79
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA
binding protein, unknown F; 1.95A {Archaeoglobus
fulgidus} SCOP: b.38.1.1
Length = 77
Score = 93.1 bits (232), Expect = 4e-27
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 8 NPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLI 66
P + + GK + ++K ++ G L D YMN L + E LGE+++
Sbjct: 5 LPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVL 64
Query: 67 RCNNILYIRGAEE 79
R NN++ I+ EE
Sbjct: 65 RGNNVVLIQPQEE 77
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers
form 35-stranded beta-sheet I heptamer, structural
genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1
PDB: 1lnx_A*
Length = 81
Score = 92.8 bits (231), Expect = 7e-27
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 1 MST---PLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHC 57
M++ L GK V+ KL+ HE +GIL S D ++N L EEIIDG+
Sbjct: 1 MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNV 60
Query: 58 TGKLGEVLIRCNNILYIRGAE 78
K G +++R N+L+I
Sbjct: 61 Y-KRGTMVVRGENVLFISPVP 80
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing,
core snRNP domain, systemic lupus eryth SLE, RNA
binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP:
b.38.1.1
Length = 75
Score = 77.8 bits (192), Expect = 5e-21
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS +P L+ G V C+ G Y+G L+ + MNCQ+++ +
Sbjct: 1 MSIGVP---IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQ 57
Query: 61 LGEVLIRCNNILYIR 75
L +V IR I ++
Sbjct: 58 LEQVYIRGCKIRFLI 72
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing,
spliceosome, core snRNP domain, systemi erythematosus,
SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP:
b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B
3pgw_X* 3s6n_A
Length = 119
Score = 78.5 bits (193), Expect = 8e-21
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 71
FL L+ ++V +LK G + G + D MN L + + + +L + IR NNI
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 72 LYIR 75
Y
Sbjct: 66 RYFI 69
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex,
PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM
site, SM fold, heteromeric heptameric ring; 3.60A {Homo
sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Length = 126
Score = 78.2 bits (192), Expect = 1e-20
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS +P L+ G V C+ G Y+G L+ + MNCQ+++ +
Sbjct: 1 MSIGVP---IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQ 57
Query: 61 LGEVLIRCNNILYIRGAEE 79
L +V IR + I ++ +
Sbjct: 58 LEQVYIRGSKIRFLILPDM 76
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2
complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Length = 76
Score = 70.4 bits (173), Expect = 4e-18
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P P L K + KL G +GIL D +MN + E+
Sbjct: 1 MSKAHP----PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN 56
Query: 61 LGEVLIRCNNILYIRGAE 78
+G V+IR N+I+ + E
Sbjct: 57 IGMVVIRGNSIIMLEALE 74
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_C
Length = 113
Score = 54.2 bits (130), Expect = 2e-11
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 13 LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGH-------CTGKLGEVL 65
L+ + + G + GIL D MN L EE + KLG V+
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 66 IRCNNILYIRGAEEGDEE 83
+R ++ I +G EE
Sbjct: 88 VRGTTLVLI-APMDGSEE 104
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_A
Length = 94
Score = 53.3 bits (128), Expect = 3e-11
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTG 59
MS + P ++ G ++ +K E+ G LV D Y+N L E T
Sbjct: 15 MSMTIL--PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTE 72
Query: 60 KLGEVLIRCNNILYI 74
K E+L+ N + +
Sbjct: 73 KHSEMLLNGNGMCML 87
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA
decay, LSM proteins, RNA binding protein; 2.70A
{Schizosaccharomyces pombe}
Length = 93
Score = 52.1 bits (125), Expect = 1e-10
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 2 STPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG-- 59
S P + L + V KL+ E G L + D ++N L EEI+
Sbjct: 3 SAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEET 62
Query: 60 -----------KLGEVLIRCNNILYI 74
+ +R ++++ I
Sbjct: 63 DKDKALKTIRKHYEMLFVRGDSVILI 88
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3;
RNA-binding protein, SM protein, ring, HOMO octamer,
mRNA processing; 2.50A {Saccharomyces cerevisiae}
Length = 96
Score = 47.8 bits (114), Expect = 4e-09
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-------DGHCTGK 60
P L L + V KL+ G L + D + N L+ E I +
Sbjct: 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERR 69
Query: 61 LGEVLIRCNNILYIRGAEEGDEEGEMRE 88
V IR + + I E+ +
Sbjct: 70 CEMVFIRGDTVTLI---STPSEDDDGAV 94
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2
complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Length = 92
Score = 47.5 bits (113), Expect = 6e-09
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI-IDGHCTGKLGEVLIRCNN 70
+L + V + +G ++ D YMN L EEI +LG ++++ +N
Sbjct: 24 YLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDN 83
Query: 71 ILYI 74
I +
Sbjct: 84 ITLL 87
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics,
structural genomics consortium, SGC, DNA binding
protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1
PDB: 3pgg_A
Length = 121
Score = 43.8 bits (103), Expect = 3e-07
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTG--------- 59
P ++ G + +K E+ G+L D Y+N L +E
Sbjct: 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKL 88
Query: 60 ------KLGEVLIRCNNILYI 74
+L +L+ NN+ +
Sbjct: 89 KRVMVNRLETILLSGNNVAML 109
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP,
splicing, core snRNP domain, systemic lupus eryth SLE,
RNA binding protein; HET: CIT; 2.00A {Homo sapiens}
SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Length = 91
Score = 38.7 bits (90), Expect = 2e-05
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 13 LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----------DGHCTGKLG 62
+ + C L+ G + G + D +MN L +E + LG
Sbjct: 9 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLG 68
Query: 63 EVLIRCNNILYI 74
VL+R N++ +
Sbjct: 69 LVLLRGENLVSM 80
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing,
spliceosome, core snRNP domain, systemi erythematosus,
SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP:
b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y*
3s6n_B
Length = 118
Score = 30.7 bits (69), Expect = 0.027
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 15 LLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI--- 71
+ V+ + + G + + D + N L + +E+ G+ + N
Sbjct: 36 VKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRY 95
Query: 72 ---LYIRG 76
+++RG
Sbjct: 96 ISKMFLRG 103
>2ksk_A Sugarcane defensin 5; csalphabeta motif, antimicrobial protein;
NMR {Saccharum officinarum}
Length = 71
Score = 25.6 bits (55), Expect = 1.2
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 22 ICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
ICK + HEYKG + + +E G C G+
Sbjct: 8 ICKSR-SHEYKGRCIQDMDCNAACVKESESYTGGFCNGR 45
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 25.8 bits (57), Expect = 1.6
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 46 LASTEEIIDGHCTGKL-GEVLIR 67
+A+ E DG TG++ G R
Sbjct: 135 IATDPEYRDGRYTGRIEGTPSFR 157
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex,
RNA binding protein; 2.00A {Homo sapiens}
Length = 86
Score = 24.7 bits (53), Expect = 2.7
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTD 39
MS + P + + + K V +EYKG +++TD
Sbjct: 1 MSEWMKKGPLEWQDYI-YKEVRVTASEKNEYKGWVLTTD 38
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 24.9 bits (55), Expect = 4.5
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 37 STDGYMNCQLASTEEIIDG 55
+ Y++ L +E G
Sbjct: 161 AGGNYLSSLLVGSEARRHG 179
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 24.5 bits (54), Expect = 5.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 41 YMNCQLASTEEIIDG 55
Y+N LA+ E DG
Sbjct: 187 YVNSILANQEATADG 201
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 24.5 bits (54), Expect = 5.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 41 YMNCQLASTEEIIDG 55
Y+N LA E + G
Sbjct: 164 YVNSALAKMEAVAAG 178
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 24.1 bits (53), Expect = 5.5
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 63 EVLIRCNNILYIRGAEEGDEEGEMR 87
+ + N L I E E G
Sbjct: 51 KARVSGQNELIIEAEREITEPGVKY 75
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate geranyltransferase, thermus
thermophilus structural genomics; 2.20A {Thermus
thermophilus} SCOP: b.81.4.1 c.68.1.20
Length = 337
Score = 24.0 bits (53), Expect = 8.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 9 PKPFLNLLTGKS 20
PKPFL L GK+
Sbjct: 25 PKPFLPLFEGKT 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.140 0.437
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,405,824
Number of extensions: 71243
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 31
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)