Query psy6373
Match_columns 199
No_of_seqs 161 out of 475
Neff 3.6
Searched_HMMs 29240
Date Sat Aug 17 00:50:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xhb_A Polypeptide N-acetylgal 100.0 3.1E-29 1.1E-33 220.7 7.0 117 2-118 199-315 (472)
2 2ffu_A Ppgalnact-2, polypeptid 99.9 5.5E-29 1.9E-33 222.1 5.9 118 1-118 230-347 (501)
3 2d7i_A Polypeptide N-acetylgal 99.9 3E-28 1E-32 223.6 7.1 115 2-118 279-393 (570)
4 2z86_A Chondroitin synthase; G 99.1 1.2E-10 4.2E-15 105.6 5.8 61 5-65 274-334 (625)
5 2fy7_A Beta-1,4-galactosyltran 98.8 8E-10 2.7E-14 95.0 2.3 58 5-62 172-234 (287)
6 2nxv_A ATP synthase subunits r 98.7 1.1E-08 3.9E-13 83.7 6.0 85 3-99 149-233 (249)
7 4fix_A UDP-galactofuranosyl tr 98.7 2.2E-08 7.7E-13 94.9 7.8 90 3-95 361-450 (657)
8 3bcv_A Putative glycosyltransf 98.3 2.5E-07 8.5E-12 72.3 3.8 51 7-58 171-222 (240)
9 3lw6_A FI08434P, beta-4-galact 98.3 2.3E-07 7.8E-12 82.3 3.6 51 5-55 156-206 (287)
10 2z86_A Chondroitin synthase; G 98.0 1.6E-05 5.4E-10 72.2 7.7 93 4-102 518-610 (625)
11 1qg8_A Protein (spore coat pol 97.6 3.2E-05 1.1E-09 61.0 3.5 56 5-63 154-216 (255)
12 3a21_A Putative secreted alpha 97.5 4.3E-06 1.5E-10 78.3 -4.2 38 80-119 423-460 (614)
13 4hg6_A Cellulose synthase subu 97.1 0.00038 1.3E-08 67.0 5.3 56 4-62 314-369 (802)
14 3l7i_A Teichoic acid biosynthe 95.9 0.0014 4.8E-08 61.5 0.0 54 7-62 152-206 (729)
15 3ckj_A Putative uncharacterize 93.9 0.028 9.6E-07 47.5 2.6 48 8-60 214-263 (329)
16 3f1y_A Mannosyl-3-phosphoglyce 74.3 1.3 4.5E-05 39.2 2.1 48 8-60 259-308 (387)
17 2bo4_A Mannosylglycerate synth 55.6 19 0.00065 32.2 5.8 47 9-56 164-212 (397)
18 3iz5_v 60S acidic ribosomal pr 20.5 21 0.00073 27.4 0.0 14 126-139 91-104 (113)
No 1
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.95 E-value=3.1e-29 Score=220.70 Aligned_cols=117 Identities=58% Similarity=1.178 Sum_probs=99.9
Q ss_pred CCCceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeeeccCCCCCCCCCCchhhhhh
Q psy6373 2 QRTPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNVFARN 81 (199)
Q Consensus 2 ~rsP~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR~~~PY~~p~g~~~~i~RN 81 (199)
+++|+++|++|+|+|++|.++|+||++|.+||+||+||++|+|+||+++.++||++|+|+++...||..+.+....+.+|
T Consensus 199 ~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~~~~n 278 (472)
T 1xhb_A 199 VRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKN 278 (472)
T ss_dssp EECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEEEEEC------------CHHHHHH
T ss_pred ccCccccceeEEEEHHHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEccCcEEEEEccCcCCCCCCcchhhHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999876655678999
Q ss_pred HHHHHHhhhccccceeecccCCCCCCCCCCCcccccC
Q psy6373 82 TRRAAEVWMDNYKHYYYAEVPLAKTIPFGETLNLENG 118 (199)
Q Consensus 82 ~lRvAEVWmDEYK~~fY~~~P~~~~id~GDISe~k~~ 118 (199)
.+|++++|||+|+++||.++|.++.+++|||++++.+
T Consensus 279 ~~r~~~~W~d~~~~~~~~~~p~~~~~~~g~~~~~~~l 315 (472)
T 1xhb_A 279 NRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGL 315 (472)
T ss_dssp HHHHHHHHCGGGGHHHHHTSTTGGGSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCCCHHHHHHH
Confidence 9999999999999999999999899999999988654
No 2
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.95 E-value=5.5e-29 Score=222.12 Aligned_cols=118 Identities=75% Similarity=1.365 Sum_probs=110.4
Q ss_pred CCCCceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeeeccCCCCCCCCCCchhhhh
Q psy6373 1 MQRTPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNVFAR 80 (199)
Q Consensus 1 p~rsP~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR~~~PY~~p~g~~~~i~R 80 (199)
|+++|.++|++++|+|++|.+||+||++|.+||+||+||++|+|+||+++.++||++|.|++|..+||.+|.+......+
T Consensus 230 ~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r~~~~~~~~~~~~~~~~~ 309 (501)
T 2ffu_A 230 PIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFAR 309 (501)
T ss_dssp CEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCCSSCCSCCTTCHHHHHHH
T ss_pred cccCccccceEEEEEHHHHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEccCcEEEEEccCcCCCcCCccchhHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999998765566789
Q ss_pred hHHHHHHhhhccccceeecccCCCCCCCCCCCcccccC
Q psy6373 81 NTRRAAEVWMDNYKHYYYAEVPLAKTIPFGETLNLENG 118 (199)
Q Consensus 81 N~lRvAEVWmDEYK~~fY~~~P~~~~id~GDISe~k~~ 118 (199)
|..|++++|||+|+.+||.++|.++.+++||||+++.+
T Consensus 310 n~~r~~~~w~d~~~~~~y~~~p~~~~~~~g~~~~r~~l 347 (501)
T 2ffu_A 310 NTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLEL 347 (501)
T ss_dssp HHHHHHHHHCGGGHHHHHHHCGGGGGCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccccCCccchHHHHHH
Confidence 99999999999999999999999999999999998654
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.94 E-value=3e-28 Score=223.61 Aligned_cols=115 Identities=49% Similarity=1.012 Sum_probs=107.9
Q ss_pred CCCceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeeeccCCCCCCCCCCchhhhhh
Q psy6373 2 QRTPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNVFARN 81 (199)
Q Consensus 2 ~rsP~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR~~~PY~~p~g~~~~i~RN 81 (199)
+++|+++|++|+|+|++|.+||+||++|.+||+||+||++|+|+||+++.++||++|+|++|...||..|.. ..+.+|
T Consensus 279 ~~~~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r~~~~~~~~~~--~~~~~n 356 (570)
T 2d7i_A 279 FESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAG--VSLARN 356 (570)
T ss_dssp EECSSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCCSSCCSCCCSS--CCHHHH
T ss_pred eecccccceEEEEEHHHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEEEccCeEEEEEccccCCCCCCch--hhhHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999988753 568899
Q ss_pred HHHHHHhhhccccceeecccCCCCCCCCCCCcccccC
Q psy6373 82 TRRAAEVWMDNYKHYYYAEVPLAKTIPFGETLNLENG 118 (199)
Q Consensus 82 ~lRvAEVWmDEYK~~fY~~~P~~~~id~GDISe~k~~ 118 (199)
.+|++++|||+|+.+||.++|.++.+++||||+++.|
T Consensus 357 ~~r~~~~W~d~~~~~~y~~~p~~~~~~~g~~~~r~~l 393 (570)
T 2d7i_A 357 LKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKL 393 (570)
T ss_dssp HHHHHHHHCGGGHHHHHTTCGGGTTSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccCCccchHHHHHH
Confidence 9999999999999999999998899999999988654
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.06 E-value=1.2e-10 Score=105.59 Aligned_cols=61 Identities=23% Similarity=0.458 Sum_probs=57.2
Q ss_pred ceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeeeccC
Q psy6373 5 PMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFRKR 65 (199)
Q Consensus 5 P~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR~~ 65 (199)
+.+.|++++++|+.|.++||||+.|..||+||+||++|+|.+|+++.++|++.|.|..+..
T Consensus 274 ~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~~~~ 334 (625)
T 2z86_A 274 RFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEGAMAYHQEPPG 334 (625)
T ss_dssp GGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECGGGCEEEECCC-
T ss_pred eEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcccchhhccCCcc
Confidence 4588999999999999999999999999999999999999999999999999999997653
No 5
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.83 E-value=8e-10 Score=95.04 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=48.8
Q ss_pred ceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEE-----EeecceEEeee
Q psy6373 5 PMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLE-----IVPCSRVGHVF 62 (199)
Q Consensus 5 P~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~-----ivPCSRVgHif 62 (199)
+.+.||+++++|+.|.++||||+.|.+||+||+||++|++..|.++. +.|++.+.|..
T Consensus 172 ~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~ 234 (287)
T 2fy7_A 172 VQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSR 234 (287)
T ss_dssp TTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---
T ss_pred CceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCC
Confidence 35679999999999999999999999999999999999999999998 45555555543
No 6
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=98.74 E-value=1.1e-08 Score=83.73 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=67.3
Q ss_pred CCceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeeeccCCCCCCCCCCchhhhhhH
Q psy6373 3 RTPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNVFARNT 82 (199)
Q Consensus 3 rsP~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR~~~PY~~p~g~~~~i~RN~ 82 (199)
+++.+.|++++++|+. +||||+.+..|..+|+||++|++..|.++.++|. .|.|..+... .....++.
T Consensus 149 ~v~~~~g~~~~~rr~~---~~gFDe~~~~~~~~D~Dl~~R~~~~G~~~~~~p~-~v~H~~~~~~--------~~~~~~~~ 216 (249)
T 2nxv_A 149 RVESLDECFLLMRRLK---PVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDF-HLHHYGRAIA--------DENFHRLR 216 (249)
T ss_dssp EEEEECTTEEEEETTB---CCCCCSSCCSSSSHHHHHHHHHHHTTCEEEECCC-CCEECCCCCC--------SHHHHHHH
T ss_pred EcCeeeeEeeEEEHhh---hCCCCCCCCCcceehhHHHHHHHHcCCeEEEecc-EEEECCCCCC--------hHHHHHHH
Confidence 4567789999999999 8899998888888999999999999999999995 5888653221 23456788
Q ss_pred HHHHHhhhccccceeec
Q psy6373 83 RRAAEVWMDNYKHYYYA 99 (199)
Q Consensus 83 lRvAEVWmDEYK~~fY~ 99 (199)
.++...|-.-+....+.
T Consensus 217 ~~~~~k~~~~~~~~~~~ 233 (249)
T 2nxv_A 217 QEMAQKYRRWFPGRILH 233 (249)
T ss_dssp HHHHHHHTTTSTTCEEE
T ss_pred HHHHHHHhhhCCcceee
Confidence 88888998766654443
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.70 E-value=2.2e-08 Score=94.91 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=69.0
Q ss_pred CCceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeeeccCCCCCCCCCCchhhhhhH
Q psy6373 3 RTPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNVFARNT 82 (199)
Q Consensus 3 rsP~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR~~~PY~~p~g~~~~i~RN~ 82 (199)
.++.+.|++++|+|+.|.++|+|| .+++++ ||+||++|++..|.++.++|.+.|.|......+-..| -......||.
T Consensus 361 ~v~~~~g~~~lirr~v~~~vGgfd-~~F~~~-ED~Dl~lR~~~~G~ki~~~p~a~V~H~~~~~~~~~s~-~r~Yy~~RN~ 437 (657)
T 4fix_A 361 DVDYNGWWTCMIPRQVAEELGQPL-PLFIKW-DDADYGLRAAEHGYPTVTLPGAAIWHMAWSDKDDAID-WQAYFHLRNR 437 (657)
T ss_dssp CCSBCCTTEEEEEHHHHHHHCSCC-SCSSSS-HHHHHHHHHHHTTCCEEEEEEEEEEECCSSSSCCTTS-THHHHHHHHH
T ss_pred eccccchhHhHhhHHHHHHhCCCh-hHhccC-cHHHHHHHHHHcCCeEEEECCEEEEEcCcCccccccH-HHHHHHHHHH
Confidence 345678999999999999999999 566664 9999999999999999999999999964322211111 1224567999
Q ss_pred HHHHHhhhccccc
Q psy6373 83 RRAAEVWMDNYKH 95 (199)
Q Consensus 83 lRvAEVWmDEYK~ 95 (199)
+.++..+..-...
T Consensus 438 l~~~~k~~~~~~~ 450 (657)
T 4fix_A 438 LVVAAMHWDGPKA 450 (657)
T ss_dssp HHHHHHHCCSCGG
T ss_pred HHHHHHhCCcchh
Confidence 9998888765433
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=98.35 E-value=2.5e-07 Score=72.32 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=43.1
Q ss_pred eccceEEEehhHHhHhc-CCCccCccCCcccchhhhhhhhcCCcEEEeecceE
Q psy6373 7 IAGGLFSIDRKYFEKLG-KYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRV 58 (199)
Q Consensus 7 maGGlFAI~R~~F~eLG-GfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRV 58 (199)
++|++++++|+.|.++| +||+.+..+ +||++|++|++..|+++.++|...+
T Consensus 171 ~~~~~~~~rr~~~~~~g~~f~~~~~~~-~eD~~~~~r~~~~g~~i~~~~~~~~ 222 (240)
T 3bcv_A 171 VSAKVVLYRRNLIEKKHLRFVSERILP-SEDLIFNVDVLANSNIVCVLPQTFY 222 (240)
T ss_dssp HTCSCEEEEHHHHHHTTCCCCCTTTCT-THHHHHHHHHHTTCSCEEECC----
T ss_pred cchhheeeeHHHHHHcCCccCCCCCcc-CCCHHHHHHHHHhCCEEEEECCCeE
Confidence 45788999999999999 999998755 5999999999999999999998733
No 9
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=98.33 E-value=2.3e-07 Score=82.31 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=46.4
Q ss_pred ceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeec
Q psy6373 5 PMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPC 55 (199)
Q Consensus 5 P~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPC 55 (199)
....||++|++|+.|..+||||+.|.+||+||.||+.|++..|..+.-.+.
T Consensus 156 ~~~~GGv~a~~re~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~~ 206 (287)
T 3lw6_A 156 DNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQN 206 (287)
T ss_dssp TTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCSS
T ss_pred CCccccEEeccHHHHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCCC
Confidence 346799999999999999999999999999999999999999998866543
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=97.96 E-value=1.6e-05 Score=72.17 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=64.9
Q ss_pred CceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeeeccCCCCCCCCCCchhhhhhHH
Q psy6373 4 TPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNVFARNTR 83 (199)
Q Consensus 4 sP~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR~~~PY~~p~g~~~~i~RN~l 83 (199)
...+.|++++++|+.|.++|+||+.|. ++||.||++|++.+| .+.++|...+.|..+... -+ ........++.+
T Consensus 518 ~~~~~~~~~~~~r~~~~~~ggfd~~~~--~~eD~dl~~r~~~~g-~~~~~~~~~~~~r~h~~~-~s--~~~~~~~~~~~~ 591 (625)
T 2z86_A 518 SAMICHHFRMFTARAWNLTEGFNESIS--NAVDYDMYLKLSEVG-PFKHINKICYNRVLHGEN-TS--IKKLDIQKENHF 591 (625)
T ss_dssp TSCCCCSCEEEEHHHHTTTTCCCSSCS--SCHHHHHHHHHTTTS-CEEEEEEEEEEEECC-----C--CSSHHHHHHHHH
T ss_pred hcccCCceEEEEHHHHHHhCCCCCccC--ChHHHHHHHHHHHhC-CEEEeCCcEEEEEECCCc-cc--hhhHHHHHHHHH
Confidence 345678889999999999999999997 469999999999998 999999876554433221 11 112233456778
Q ss_pred HHHHhhhccccceeecccC
Q psy6373 84 RAAEVWMDNYKHYYYAEVP 102 (199)
Q Consensus 84 RvAEVWmDEYK~~fY~~~P 102 (199)
++...++..+.-..|...|
T Consensus 592 ~~~~~~l~~~~~~~~~~~~ 610 (625)
T 2z86_A 592 KVVNESLSRLGIKKYKYSP 610 (625)
T ss_dssp HHHHHHTTTTTCCSEEEEE
T ss_pred HHHHHHHHHcCCchhhcCc
Confidence 8888888775544333333
No 11
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=97.61 E-value=3.2e-05 Score=60.96 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=47.3
Q ss_pred ceeccceEEEehhHHhHhc-CC------CccCccCCcccchhhhhhhhcCCcEEEeecceEEeeec
Q psy6373 5 PMIAGGLFSIDRKYFEKLG-KY------DMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVFR 63 (199)
Q Consensus 5 P~maGGlFAI~R~~F~eLG-Gf------DeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHifR 63 (199)
..+.|++++++|+.|.++| +| |+.+ +.+||.+|++|++..| .+.++|...+.|..+
T Consensus 154 ~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~--~~~eD~~~~~r~~~~g-~~~~~~~~~~~~r~~ 216 (255)
T 1qg8_A 154 CAIDHCSVMHRYSVLEKVKEKFGSYWDESPAF--YRIGDARFFWRVNHFY-PFYPLDEELDLNYIT 216 (255)
T ss_dssp TTSCGGGEEEETHHHHHHHHHHSSSSCCCGGG--STTHHHHHHHHHTTTC-CBEEEEEEEEEEEEC
T ss_pred CCCccceEEEEHHHHHhhcccccccccCCccc--chHHHHHHHHHHHHhC-CEEEecCcEEEEEEc
Confidence 4567888999999999999 89 6665 5679999999999985 799999988877654
No 12
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=97.45 E-value=4.3e-06 Score=78.29 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=34.5
Q ss_pred hhHHHHHHhhhccccceeecccCCCCCCCCCCCcccccCC
Q psy6373 80 RNTRRAAEVWMDNYKHYYYAEVPLAKTIPFGETLNLENGG 119 (199)
Q Consensus 80 RN~lRvAEVWmDEYK~~fY~~~P~~~~id~GDISe~k~~~ 119 (199)
+|..|+|+||||+||.+||. .| ..++++||||++++|-
T Consensus 423 ~N~~R~aeVwmD~~k~~~~~-~P-~~~~~~gdvs~~~~Lr 460 (614)
T 3a21_A 423 TSSARTATLQVNGQTATTVS-FP-PTGASAGTVSVEVSLS 460 (614)
T ss_dssp SSSCEEEEEEETTSCCEEEE-EC-CCCSSCEEEEEEEEEC
T ss_pred CCCCceEEEEECCceeEEEe-cC-CCCCCccceeEEEecc
Confidence 79999999999999999997 57 5688999999999885
No 13
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=97.15 E-value=0.00038 Score=66.97 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=50.4
Q ss_pred CceeccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeee
Q psy6373 4 TPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVF 62 (199)
Q Consensus 4 sP~maGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHif 62 (199)
.+...|++++++|+.|.++||||+... +||.+|++|++..|.++.++|.+.+.|..
T Consensus 314 ~~~~~G~~~~~Rr~al~~vGgf~~~~~---~ED~~l~~rl~~~G~ri~~~~~~~~~~~~ 369 (802)
T 4hg6_A 314 GAFFCGSAAVLRRRALDEAGGFAGETI---TEDAETALEIHSRGWKSLYIDRAMIAGLQ 369 (802)
T ss_dssp CCCCCSSSEEEEHHHHHHHTTCCCSSS---SHHHHHHHHHHTTTCCEEECCCCCEEECC
T ss_pred CceecccchhhhHHHHHHcCCcCCCCc---chHHHHHHHHHHcCCeEEEecCCEEEecC
Confidence 456789999999999999999998764 59999999999999999999999998864
No 14
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=95.86 E-value=0.0014 Score=61.47 Aligned_cols=54 Identities=0% Similarity=-0.145 Sum_probs=0.0
Q ss_pred eccceEEEehhHHhHhc-CCCccCccCCcccchhhhhhhhcCCcEEEeecceEEeee
Q psy6373 7 IAGGLFSIDRKYFEKLG-KYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHVF 62 (199)
Q Consensus 7 maGGlFAI~R~~F~eLG-GfDeGm~iwGGEdiELS~RvWlCGG~i~ivPCSRVgHif 62 (199)
..++.++++|+.|.++| +||+++.. +||++|++|+...|.++.++|...+.|..
T Consensus 152 ~~~~~~~~rr~~l~~~gl~fde~~~~--~ED~d~~~rl~~~g~~i~~~~~~~~~~yr 206 (729)
T 3l7i_A 152 QSACNIIFRTAIVRAHHIRFNENLNT--YVDWSFVLEYMKYVNKFVRIFNFPFYFRG 206 (729)
T ss_dssp ---------------------------------------------------------
T ss_pred cchhheeeeHHHHHHcCCCcCCCCCc--ccCHHHHHHHHHhcCCEEEecCcEEEEEE
Confidence 35667899999999999 99999853 69999999999999999999555565543
No 15
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=93.86 E-value=0.028 Score=47.47 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=37.5
Q ss_pred ccceEEEehhHHhHhcCCCccCccCCcccchhhhhhhh-cCC-cEEEeecceEEe
Q psy6373 8 AGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQ-CGG-SLEIVPCSRVGH 60 (199)
Q Consensus 8 aGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvWl-CGG-~i~ivPCSRVgH 60 (199)
.||+++++|+.|.++| ||+++ ++|+||.+|+.. +|. .|..+|.....|
T Consensus 214 ~~g~~~~rr~~l~~i~-f~~~~----~~D~~l~~r~~~~~g~~~i~~v~~~~r~h 263 (329)
T 3ckj_A 214 LGGEYAATRELLTSVP-FAPGY----GVEIGLLVDTFDRLGLDAIAQVNLGVREH 263 (329)
T ss_dssp TCSCEEEEHHHHTTSC-BCCGG----GHHHHHHHHHHHHHCGGGEEEEEEEECEE
T ss_pred CccceeeeHHHHHhCC-CCCCC----cccHHHHHHHHHhcCCccEeeecceEEec
Confidence 5778999999999998 88764 399999999987 454 377777654444
No 16
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=74.34 E-value=1.3 Score=39.18 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=38.5
Q ss_pred ccceEEEehhHHhHhcCCCccCccCCcccchhhhhhh-hcCCc-EEEeecceEEe
Q psy6373 8 AGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVW-QCGGS-LEIVPCSRVGH 60 (199)
Q Consensus 8 aGGlFAI~R~~F~eLGGfDeGm~iwGGEdiELS~RvW-lCGG~-i~ivPCSRVgH 60 (199)
.+|.++++|+.|..| .|++ .| +.++||.++++ .+|.. |.-||-....|
T Consensus 259 ~sG~~a~rR~~l~~i-~f~~---gy-g~e~ell~~~~~~~G~~~I~eVpi~~~~h 308 (387)
T 3f1y_A 259 LAGEFVADRELFCSI-PFLT---GY-AVETGIMIDVLKKVGLGAMAQVDLGERQN 308 (387)
T ss_dssp TCSCEEEEHHHHTTS-CEEC---ST-THHHHHHHHHHHHHCGGGEEEEEEEECCC
T ss_pred ccccEEEEHHHHHhC-CCCC---Cc-chHHHHHHHHHHhcCCCeEEEEecceeec
Confidence 377899999999999 6864 47 47899999985 56876 99999776544
No 17
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=55.64 E-value=19 Score=32.20 Aligned_cols=47 Identities=23% Similarity=0.206 Sum_probs=36.9
Q ss_pred cceEEEehhHHhHhcCCC--ccCccCCcccchhhhhhhhcCCcEEEeecc
Q psy6373 9 GGLFSIDRKYFEKLGKYD--MAMSVWGGENLEISFRVWQCGGSLEIVPCS 56 (199)
Q Consensus 9 GGlFAI~R~~F~eLGGfD--eGm~iwGGEdiELS~RvWlCGG~i~ivPCS 56 (199)
+|.|+++|+.+..+...+ +....|| -++||.+++...|.+|.-||..
T Consensus 164 sG~~a~~R~vl~~l~~~~~~~~~~~fg-~eiel~~~a~~~G~rI~EVpig 212 (397)
T 2bo4_A 164 GGELLMRREVAAMLYEDERVRRRSDWG-IDTLYTFVTVQQGVSIYECYIP 212 (397)
T ss_dssp CCCEEEEHHHHHHHHHCHHHHTCCSTT-HHHHHHHHHHHTTCCEEEEECT
T ss_pred cccEEEeHHHHHHHhhhcccCcCCCcc-hHHHHHHHHHHcCCEEEEEECc
Confidence 578999999999984321 1445674 6999999999999999888854
No 18
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=20.52 E-value=21 Score=27.38 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHH
Q psy6373 126 EEKEKKKEEEEEEE 139 (199)
Q Consensus 126 ~~~~~~~~~~~~~~ 139 (199)
+++|+|+||+||++
T Consensus 91 ~~~e~k~ee~EEsD 104 (113)
T 3iz5_v 91 SKKEEKVVEKEESD 104 (113)
T ss_dssp --------------
T ss_pred hhhhhhcccccccc
Confidence 33444444444433
Done!