RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6373
         (199 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score =  132 bits (332), Expect = 3e-38
 Identities = 68/109 (62%), Positives = 84/109 (77%)

Query: 2   QRTPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHV 61
            RTP +AGGLFSIDR YF+++G YD  M +WGGENLEISFR+WQCGG+LEIV CS VGHV
Sbjct: 192 VRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHV 251

Query: 62  FRKRHPYTFPGGSGNVFARNTRRAAEVWMDNYKHYYYAEVPLAKTIPFG 110
           FRK  PYTFPGG+G +  +N RR AEVWMD +K+++Y   P    + +G
Sbjct: 252 FRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYG 300


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
           {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 10/131 (7%), Positives = 19/131 (14%), Gaps = 47/131 (35%)

Query: 9   GGLFSIDRKYFEKL-------GKYDMAMSVW-----------------GGENLEISFR-- 42
           GG   + R+    L        + D  +                            +   
Sbjct: 163 GGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGL 222

Query: 43  -------------VWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSG---NVFARNTRRAA 86
                        +      +   P           HP+  P             T    
Sbjct: 223 DDLRTMLVECFAAIQSLQHEVVGQPAIHRQ-----EHPHRVPVHIAERVGYDVEATLHRL 277

Query: 87  EVWMDNYKHYY 97
                  +   
Sbjct: 278 MQHWTPRQVEL 288


>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score = 31.5 bits (71), Expect = 0.043
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 5   PMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCG 47
               GG+ ++ ++ F  +  +       GGE+ +I  R+   G
Sbjct: 156 VQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRG 198


>d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 151

 Score = 25.9 bits (56), Expect = 2.7
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 125 EEEKEKKKEEEEEEEQSRGGNRAL---RPSTYTRHRHQTSFIDQEVAYMKMTSKKYRMGE 181
            + K + K++ E     +G +  +   + ST TR   +T F         +T++   +G 
Sbjct: 28  ADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGV 87

Query: 182 DEEEKEEEGT 191
           +E   +    
Sbjct: 88  NESLTDTARV 97


>d1j8ra_ b.2.3.3 (A:) PapG adhesin receptor-binding domain
           {Escherichia coli [TaxId: 562]}
          Length = 196

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 8/59 (13%)

Query: 61  VFRKRHPYTFPGGSGNVFARNTR----RAAEVWMDNYKHYYYAEVPLAKTIPFGETLNL 115
           +F+   P   P G  +V    T       A      +K  Y     +AKT+P    +  
Sbjct: 135 IFKVALPADLPLGDYSVKIPYTSGMQRHFASYLGARFKIPY----NVAKTLPRENEMLF 189


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 25.7 bits (56), Expect = 3.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 122 EEEEEEKEKKKEEEEEEEQSR 142
            E EE+  + K  +E+ E+ R
Sbjct: 311 RETEEKMRRAKLAKEKAEKER 331


>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
           cedar (Juniperus ashei) [TaxId: 13101]}
          Length = 346

 Score = 25.8 bits (56), Expect = 3.7
 Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 9/82 (10%)

Query: 2   QRTPMIAGGLFSIDRKYFEKLGKYDMAMSVWGGENLEISFRVWQCGGSLEIVPCSRVGHV 61
           QR P    GL  +    ++    Y +  S       E        G S      S    V
Sbjct: 228 QRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSE--------GNSFTAPSESYKKEV 279

Query: 62  FRKRHPYTFPGGSGNVFARNTR 83
             KR     P    N   R+TR
Sbjct: 280 T-KRIGCESPSACANWVWRSTR 300


>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId:
          2336]}
          Length = 299

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 27 MAMSVW--GGENLEISFRVWQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGNVFARNTRR 84
          M + +   G  N++I  +V       +     + G   +      FPGG G   A    +
Sbjct: 1  MFLVISVVGSSNIDIVLKV-------DHFT--KPGETQKAIEMNVFPGGKGANQAVTVAK 51


>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 24.5 bits (53), Expect = 8.0
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 53  VPCSRVGHVFRKRHPYTFPGGSGNVFARNTRRAAEVWMDN 92
           V     G +FR  +      G+GN +A+         +D+
Sbjct: 76  VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDS 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 806,362
Number of extensions: 38802
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 24
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.4 bits)