Query psy6374
Match_columns 305
No_of_seqs 213 out of 1274
Neff 3.2
Searched_HMMs 29240
Date Sat Aug 17 00:51:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_X 60S ribosomal protein L 100.0 7.1E-63 2.4E-67 421.1 12.7 139 167-305 4-142 (142)
2 3iz5_X 60S ribosomal protein L 100.0 4.9E-63 1.7E-67 426.0 10.4 144 162-305 8-152 (152)
3 4a17_R RPL23A, 60S ribosomal p 100.0 1.3E-61 4.3E-66 416.5 10.6 143 162-305 5-150 (150)
4 2zkr_s 60S ribosomal protein L 100.0 2.4E-59 8.3E-64 404.4 8.9 145 161-305 12-156 (156)
5 3bbo_V Ribosomal protein L23; 100.0 3.6E-44 1.2E-48 318.5 4.0 111 189-305 84-194 (198)
6 3j21_T 50S ribosomal protein L 100.0 9.6E-40 3.3E-44 258.2 10.6 86 220-305 1-86 (86)
7 1vq8_S 50S ribosomal protein L 100.0 1.4E-36 4.9E-41 239.5 9.5 84 222-305 2-85 (85)
8 3tve_T 50S ribosomal protein L 100.0 9.7E-31 3.3E-35 208.7 7.0 78 221-300 1-91 (92)
9 2zjr_Q 50S ribosomal protein L 100.0 2.2E-30 7.5E-35 207.7 7.0 81 220-302 1-94 (95)
10 3r8s_T 50S ribosomal protein L 100.0 8.2E-30 2.8E-34 203.7 7.0 77 218-294 3-92 (93)
11 2dhg_A TRNA selenocysteine ass 73.1 9.9 0.00034 27.7 6.3 55 244-299 12-68 (104)
12 1owx_A Lupus LA protein, SS-B, 68.5 4.1 0.00014 33.3 3.6 56 242-302 17-76 (121)
13 1x5p_A Negative elongation fac 55.5 24 0.00081 25.5 5.4 51 244-299 16-66 (97)
14 2do4_A Squamous cell carcinoma 55.0 18 0.00063 26.1 4.7 52 246-299 22-75 (100)
15 3md3_A Nuclear and cytoplasmic 54.7 25 0.00086 26.6 5.6 53 245-299 4-58 (166)
16 2ywk_A Putative RNA-binding pr 54.2 28 0.00095 24.7 5.5 49 249-299 24-74 (95)
17 2e44_A Insulin-like growth fac 53.6 45 0.0015 23.7 6.6 54 243-299 17-71 (96)
18 2do0_A HnRNP M, heterogeneous 52.9 21 0.00071 26.3 4.8 53 245-299 19-73 (114)
19 1x4g_A Nucleolysin TIAR; struc 49.7 55 0.0019 24.0 6.7 52 243-299 25-78 (109)
20 3q2s_C Cleavage and polyadenyl 48.6 32 0.0011 29.6 5.9 56 244-300 71-130 (229)
21 1ywx_A 30S ribosomal protein S 48.6 31 0.0011 27.7 5.4 68 231-302 6-80 (102)
22 2cph_A RNA binding motif prote 46.8 27 0.00093 25.3 4.5 52 249-302 23-78 (107)
23 2dnh_A Bruno-like 5, RNA bindi 46.1 26 0.00089 25.4 4.3 54 244-299 16-73 (105)
24 2hvz_A Splicing factor, argini 45.3 34 0.0012 24.7 4.8 50 246-299 5-54 (101)
25 3nmr_A Cugbp ELAV-like family 45.0 33 0.0011 26.2 4.9 54 244-299 98-153 (175)
26 2g1d_A 30S ribosomal protein S 44.2 30 0.001 27.6 4.6 65 234-302 9-81 (98)
27 2cq2_A Hypothetical protein LO 43.9 34 0.0012 27.2 5.0 51 245-300 27-81 (114)
28 2lxi_A RNA-binding protein 10; 43.5 16 0.00055 26.6 2.8 50 248-298 8-60 (91)
29 1whw_A Hypothetical protein ri 42.8 27 0.00093 25.0 4.0 54 244-299 9-67 (99)
30 2d9o_A DNAJ (HSP40) homolog, s 42.7 30 0.001 26.5 4.4 45 251-299 27-71 (100)
31 3beg_B Splicing factor, argini 42.6 24 0.00084 26.6 3.8 52 242-299 17-68 (115)
32 1xn9_A 30S ribosomal protein S 42.4 43 0.0015 26.8 5.4 66 233-302 8-80 (101)
33 2v94_A RPS24, 30S ribosomal pr 42.0 44 0.0015 27.0 5.4 64 235-302 18-89 (107)
34 2adc_A Polypyrimidine tract-bi 41.4 28 0.00096 29.0 4.3 49 249-300 159-207 (229)
35 2dgp_A Bruno-like 4, RNA bindi 41.3 30 0.001 25.1 4.1 54 244-299 14-72 (106)
36 3s7r_A Heterogeneous nuclear r 40.5 55 0.0019 22.8 5.2 54 244-299 12-70 (87)
37 2dis_A Unnamed protein product 40.4 45 0.0015 24.3 4.9 55 243-300 8-70 (109)
38 2xzm_P RPS24E; ribosome, trans 40.4 83 0.0029 27.0 7.1 57 243-302 19-83 (149)
39 3d2w_A TAR DNA-binding protein 39.2 23 0.00078 25.7 3.1 51 242-296 12-62 (89)
40 1x4a_A Splicing factor, argini 38.5 30 0.001 25.4 3.7 49 249-299 30-78 (109)
41 2cqc_A Arginine/serine-rich sp 37.4 49 0.0017 23.3 4.5 53 245-299 19-74 (95)
42 2cq4_A RNA binding motif prote 37.4 46 0.0016 24.6 4.6 54 244-299 28-84 (114)
43 1x4c_A Splicing factor, argini 37.0 34 0.0012 25.3 3.8 48 245-298 19-66 (108)
44 1qm9_A Polypyrimidine tract-bi 36.4 34 0.0012 27.3 3.9 54 244-300 121-176 (198)
45 4a8x_A RNA-binding protein wit 36.3 38 0.0013 23.4 3.8 53 246-300 9-65 (88)
46 2fy1_A RNA-binding motif prote 36.2 32 0.0011 26.1 3.6 54 244-299 8-65 (116)
47 2xs2_A Deleted in azoospermia- 36.0 89 0.003 22.4 5.9 54 245-300 11-68 (102)
48 2rs2_A Musashi-1, RNA-binding 35.9 38 0.0013 25.3 3.9 53 246-300 30-85 (109)
49 3ex7_B RNA-binding protein 8A; 35.8 37 0.0013 25.5 3.9 54 244-299 23-81 (126)
50 2cpz_A CUG triplet repeat RNA- 35.7 70 0.0024 23.6 5.4 53 245-299 29-84 (115)
51 1s79_A Lupus LA protein; RRM, 35.6 52 0.0018 24.7 4.7 53 244-298 14-68 (103)
52 2dha_A FLJ20171 protein; RRM d 35.3 25 0.00086 27.8 3.0 57 242-298 22-84 (123)
53 1x5s_A Cold-inducible RNA-bind 35.2 50 0.0017 23.7 4.4 54 244-299 13-71 (102)
54 2err_A Ataxin-2-binding protei 34.9 26 0.00089 26.1 2.9 56 243-300 29-87 (109)
55 2d9p_A Polyadenylate-binding p 34.6 43 0.0015 24.2 3.9 52 245-299 19-72 (103)
56 3mdf_A Peptidyl-prolyl CIS-tra 34.2 45 0.0015 23.0 3.8 54 244-299 8-66 (85)
57 4fxv_A ELAV-like protein 1; RN 34.0 61 0.0021 23.9 4.8 53 245-299 23-78 (99)
58 2jvr_A Nucleolar protein 3; RN 33.9 47 0.0016 25.7 4.3 47 249-298 36-83 (111)
59 2dnm_A SRP46 splicing factor; 33.7 59 0.002 23.4 4.6 54 245-300 15-73 (103)
60 2adc_A Polypyrimidine tract-bi 33.2 90 0.0031 25.9 6.2 53 243-299 34-89 (229)
61 1p27_B RNA-binding protein 8A; 33.2 67 0.0023 23.2 4.8 54 244-299 24-82 (106)
62 1why_A Hypothetical protein ri 33.1 64 0.0022 23.0 4.7 50 245-299 21-70 (97)
63 3k9o_B Ubiquitin, UBB+1; E2-25 32.7 55 0.0019 23.8 4.3 36 242-277 11-46 (96)
64 2kt5_A RNA and export factor-b 32.6 45 0.0015 25.1 3.9 54 243-298 35-92 (124)
65 2f3j_A RNA and export factor b 32.2 50 0.0017 27.3 4.4 55 243-299 88-146 (177)
66 2i2y_A Fusion protein consists 32.0 44 0.0015 26.0 3.8 47 249-299 81-127 (150)
67 4f25_A Polyadenylate-binding p 31.8 49 0.0017 24.9 4.0 54 243-298 7-61 (115)
68 1u6f_A Tcubp1, RNA-binding pro 31.6 67 0.0023 24.4 4.8 55 244-300 43-102 (139)
69 3ulh_A THO complex subunit 4; 31.5 74 0.0025 23.0 4.8 55 243-299 29-87 (107)
70 2cpf_A RNA binding motif prote 31.3 71 0.0024 22.7 4.6 54 245-300 9-68 (98)
71 1wi8_A EIF-4B, eukaryotic tran 31.3 29 0.001 25.3 2.5 51 245-298 17-73 (104)
72 3s8s_A Histone-lysine N-methyl 31.1 59 0.002 24.7 4.3 53 244-298 9-64 (110)
73 1wez_A HnRNP H', FTP-3, hetero 30.8 33 0.0011 25.5 2.9 47 249-298 23-71 (102)
74 3a9j_A Ubiquitin; protein comp 30.8 67 0.0023 21.7 4.2 36 242-277 10-45 (76)
75 4dwf_A HLA-B-associated transc 30.6 84 0.0029 22.5 4.9 36 242-277 15-50 (90)
76 2dgw_A Probable RNA-binding pr 30.5 54 0.0019 23.1 3.8 46 249-297 18-65 (91)
77 2cq3_A RNA-binding protein 9; 30.5 48 0.0017 23.9 3.6 53 245-299 17-72 (103)
78 2cqb_A Peptidyl-prolyl CIS-tra 29.2 40 0.0014 24.3 2.9 49 249-299 20-71 (102)
79 2dnz_A Probable RNA-binding pr 28.8 62 0.0021 22.8 3.9 53 245-299 7-64 (95)
80 2cqg_A TDP-43, TAR DNA-binding 28.7 1E+02 0.0035 22.1 5.2 49 249-299 23-74 (103)
81 2hgm_A HNRPF protein, heteroge 28.5 41 0.0014 26.9 3.1 55 244-299 43-101 (126)
82 3phx_B Ubiquitin-like protein 28.0 90 0.0031 21.8 4.6 36 242-277 14-49 (79)
83 2hzc_A Splicing factor U2AF 65 27.8 1E+02 0.0034 21.2 4.8 50 245-297 10-68 (87)
84 1x4h_A RNA-binding protein 28; 27.8 71 0.0024 23.2 4.2 50 249-300 23-75 (111)
85 1ndd_A NEDD8, protein (ubiquit 27.8 81 0.0028 21.3 4.2 36 242-277 10-45 (76)
86 2dh8_A DAZ-associated protein 27.8 70 0.0024 23.1 4.1 49 249-299 24-75 (105)
87 3n3k_B Ubiquitin; hydrolase, p 27.7 70 0.0024 22.4 4.0 36 242-277 13-48 (85)
88 2g4b_A Splicing factor U2AF 65 27.6 2E+02 0.0069 21.8 7.0 56 243-300 96-154 (172)
89 2yh0_A Splicing factor U2AF 65 27.5 1.5E+02 0.0051 23.1 6.2 55 244-300 115-174 (198)
90 1x5o_A RNA binding motif, sing 27.3 50 0.0017 24.3 3.2 47 249-297 33-81 (114)
91 1wf0_A TDP-43, TAR DNA-binding 27.1 23 0.00078 25.0 1.3 45 248-296 12-56 (88)
92 2dnn_A RNA-binding protein 12; 26.6 41 0.0014 25.9 2.7 51 245-298 18-72 (109)
93 2dnq_A RNA-binding protein 4B; 26.4 81 0.0028 22.2 4.2 44 249-299 16-59 (90)
94 2cqd_A RNA-binding region cont 26.4 79 0.0027 23.3 4.2 49 248-298 24-75 (116)
95 2ghp_A U4/U6 snRNA-associated 26.2 59 0.002 27.6 3.9 50 249-299 125-176 (292)
96 4hcn_B Polyubiquitin, ubiquiti 26.1 71 0.0024 23.7 3.9 36 242-277 32-67 (98)
97 3mtn_B UBA80, ubcep1, ubiquiti 26.0 91 0.0031 21.7 4.3 36 242-277 13-48 (85)
98 3v6c_B Ubiquitin; structural g 25.7 88 0.003 22.7 4.3 36 242-277 27-62 (91)
99 3dbh_I NEDD8; cell cycle, acti 25.6 76 0.0026 22.4 3.9 36 242-277 22-57 (88)
100 2dgt_A RNA-binding protein 30; 25.0 74 0.0025 22.5 3.7 49 244-299 11-61 (92)
101 2dng_A Eukaryotic translation 24.9 56 0.0019 23.7 3.1 52 244-298 16-72 (103)
102 2voo_A Lupus LA protein; RNA-b 24.9 1.2E+02 0.004 25.2 5.5 53 246-300 114-168 (193)
103 2cqi_A Nucleolysin TIAR; RNA r 24.7 1.2E+02 0.0042 21.7 4.9 54 243-298 15-71 (103)
104 4fbj_B NEDD8; effector-HOST ta 24.4 82 0.0028 22.9 3.9 36 242-277 10-45 (88)
105 4eew_A Large proline-rich prot 24.3 1.3E+02 0.0043 21.5 4.9 37 241-277 26-62 (88)
106 2yh0_A Splicing factor U2AF 65 24.2 1.7E+02 0.0059 22.8 6.0 52 245-299 8-68 (198)
107 3u5c_Y RP50, 40S ribosomal pro 23.8 1.4E+02 0.0049 25.1 5.7 62 237-302 16-85 (135)
108 1x5u_A Splicing factor 3B subu 23.6 83 0.0028 22.6 3.8 50 249-300 23-75 (105)
109 2qfj_A FBP-interacting repress 23.5 1E+02 0.0035 24.4 4.7 51 248-300 132-185 (216)
110 3pgw_S U1-70K; protein-RNA com 22.8 97 0.0033 29.4 5.1 53 245-299 106-161 (437)
111 3sde_A Paraspeckle component 1 22.8 83 0.0028 26.7 4.2 51 249-301 104-156 (261)
112 1fxl_A Paraneoplastic encephal 22.7 1.3E+02 0.0044 22.6 4.9 52 246-299 7-61 (167)
113 1wh3_A 59 kDa 2'-5'-oligoadeny 22.6 98 0.0033 21.9 4.0 36 242-277 17-52 (87)
114 1wx7_A Ubiquilin 3; ubiquitin- 22.5 1.3E+02 0.0044 22.6 4.8 35 243-277 27-61 (106)
115 1qm9_A Polypyrimidine tract-bi 22.4 80 0.0027 25.0 3.8 50 245-298 5-57 (198)
116 2dzi_A Ubiquitin-like protein 22.2 1.1E+02 0.0039 21.0 4.2 36 242-277 17-52 (81)
117 3md1_A Nuclear and cytoplasmic 22.1 1.3E+02 0.0043 20.5 4.4 54 245-300 5-61 (83)
118 2dgv_A HnRNP M, heterogeneous 22.0 1.2E+02 0.0043 21.0 4.4 48 249-299 16-65 (92)
119 2bwf_A Ubiquitin-like protein 21.9 1.2E+02 0.004 20.7 4.2 36 242-277 13-48 (77)
120 1oo0_B CG8781-PA, drosophila Y 21.8 91 0.0031 22.7 3.8 54 244-299 27-85 (110)
121 1whx_A Hypothetical protein ri 21.7 90 0.0031 23.4 3.8 50 244-298 11-62 (111)
122 3ns6_A Eukaryotic translation 21.4 56 0.0019 23.9 2.5 45 252-298 23-70 (100)
123 3zzp_A TS9, ribosomal protein 21.3 51 0.0018 24.8 2.3 28 240-267 41-70 (77)
124 2lkz_A RNA-binding protein 5; 21.0 56 0.0019 24.4 2.5 57 243-299 10-70 (95)
125 1cqm_A Ribosomal protein S6; a 20.5 1.5E+02 0.0052 22.7 4.9 33 245-277 6-44 (101)
126 2g4b_A Splicing factor U2AF 65 20.3 1.4E+02 0.0049 22.7 4.7 51 245-298 8-67 (172)
127 1h2v_Z 20 kDa nuclear CAP bind 20.1 1.3E+02 0.0044 23.4 4.5 56 243-300 39-99 (156)
128 3n9u_C Cleavage and polyadenyl 20.1 1.7E+02 0.0059 23.5 5.4 53 245-298 59-115 (156)
129 2ghp_A U4/U6 snRNA-associated 20.0 1.2E+02 0.004 25.7 4.6 51 246-298 213-270 (292)
No 1
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=100.00 E-value=7.1e-63 Score=421.09 Aligned_cols=139 Identities=53% Similarity=0.841 Sum_probs=120.3
Q ss_pred hHHHHHHhhhhhcccCCCceeeeecccccCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCCeEE
Q psy6374 167 VKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLV 246 (305)
Q Consensus 167 kaKAlKAkKaVlKG~hs~k~kKirts~~F~rPkTl~l~R~PKyprks~prrnklD~yaIIK~PLtTEKAmKkiEdnNtlV 246 (305)
++|||+|+|+||||+|||+++++|||++||||+||+|+|+|+|||+|+|+||+||+|+||++||+||++|+++|+||+||
T Consensus 4 ~~ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kld~~~IIk~PliTEKa~~~~E~~N~~v 83 (142)
T 3u5e_X 4 SAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILV 83 (142)
T ss_dssp ------------------CCCCCCSCSCCCCCCCCCCCCCCSSCSSSSCCCCTTCHHHHEEEECCCHHHHHHHHHHCEEE
T ss_pred hhHHHHHHHHHhccCCcccccccccCccccCccccccccCCCCCcccCCCCCCCCHHHhhhcCCcCHHHHHHHHhCCEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhhhCCC
Q psy6374 247 FIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 305 (305)
Q Consensus 247 FiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANKIGii 305 (305)
|+||++|||+||++|||+||||+|.+|||||+|+|||||||+|.+|||||||||+||||
T Consensus 84 F~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkigii 142 (142)
T 3u5e_X 84 FQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142 (142)
T ss_dssp EEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHHTCC
T ss_pred EEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999998
No 2
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=100.00 E-value=4.9e-63 Score=426.01 Aligned_cols=144 Identities=65% Similarity=0.951 Sum_probs=121.3
Q ss_pred cchhhhH-HHHHHhhhhhcccCCCceeeeecccccCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhh
Q psy6374 162 NEQGQVK-KALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIE 240 (305)
Q Consensus 162 ~~a~aka-KAlKAkKaVlKG~hs~k~kKirts~~F~rPkTl~l~R~PKyprks~prrnklD~yaIIK~PLtTEKAmKkiE 240 (305)
+.+++++ |||+|+|+||||+|||+++++|||++||||+||+|+|+|+|||+|+|+||+||+|+||++||+||++|+++|
T Consensus 8 ~~a~aka~ka~kakkavlkg~~~~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~kmd~~~IIk~PliTEKa~~~~E 87 (152)
T 3iz5_X 8 KKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIE 87 (152)
T ss_dssp -----------------------CCCHHHHHHHHHTCSSCCCCCCCCCCCCSSCCCCCCCCCCCSEEEECCSHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhccccccccccccCcccccCccccccccCCCCCcccCCCCCcCcHHHHHhhCCcCHHHHHHHH
Confidence 4566777 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhhhCCC
Q psy6374 241 DNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 305 (305)
Q Consensus 241 dnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANKIGii 305 (305)
+||+|||+||++|||+||++|||+||||+|.+|||||+|+|||||||+|.+|||||||||+||||
T Consensus 88 ~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnkiGii 152 (152)
T 3iz5_X 88 DNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152 (152)
T ss_dssp HHSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGGCCC
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 3
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=100.00 E-value=1.3e-61 Score=416.54 Aligned_cols=143 Identities=46% Similarity=0.663 Sum_probs=117.3
Q ss_pred cchhhhHHHHHHhhhhhcccCCCceeeeecccccCCCCcccCCCCCCCCCCCCCCCC---CCCccccccccccchhhhhh
Q psy6374 162 NEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRN---RMDAFNIIKYPLTTESAMKK 238 (305)
Q Consensus 162 ~~a~akaKAlKAkKaVlKG~hs~k~kKirts~~F~rPkTl~l~R~PKyprks~prrn---klD~yaIIK~PLtTEKAmKk 238 (305)
..+++++|||+|+|+||||+| |+++++|||++||||+||+|+|+|+|||+|+|+|| +||+|+||++||+||++|++
T Consensus 5 ~~~~ak~ka~kakkavlkg~~-~~~~k~~~s~~f~~pktl~l~r~pkyp~ks~p~~~~~~kld~y~IIk~PliTEKa~~~ 83 (150)
T 4a17_R 5 NKTQAVNKAKNTAKVAKKGSS-ITKHKTYTGVRFFRPKTLQLAKAPKYSRTVRAHLKVSGHLDNHSVVKTPLTTEKAMKK 83 (150)
T ss_dssp --------------------------CCCSSSBCCCCCCCCCCCCCSSCSSHHHHTTCCCCCCHHHHEEEECCSHHHHHH
T ss_pred cchhHHHHHHHHHHHHhccCC-CCcceecCCccccCccccccccCCCCCCcccCCCCccccCCHHHhhhccccCHHHHHH
Confidence 457788899999999999998 57799999999999999999999999999999999 99999999999999999999
Q ss_pred hhcCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhhhCCC
Q psy6374 239 IEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 305 (305)
Q Consensus 239 iEdnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANKIGii 305 (305)
+|+||+|||+||++|||+||++|||+||||+|.+|||||+|+|||||||+|.+|||||||||+||||
T Consensus 84 ~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnkiGii 150 (150)
T 4a17_R 84 MEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKIGLI 150 (150)
T ss_dssp HHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHHTCC
T ss_pred HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 4
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.4e-59 Score=404.42 Aligned_cols=145 Identities=70% Similarity=0.992 Sum_probs=77.7
Q ss_pred CcchhhhHHHHHHhhhhhcccCCCceeeeecccccCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhh
Q psy6374 161 KNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIE 240 (305)
Q Consensus 161 ~~~a~akaKAlKAkKaVlKG~hs~k~kKirts~~F~rPkTl~l~R~PKyprks~prrnklD~yaIIK~PLtTEKAmKkiE 240 (305)
.+.++++++||+|+++||+|+|+|+.+++|||++|+||+||+|+|+|+|||+|+|+||+||+|+||++||+||++|+++|
T Consensus 12 ~p~~~~~~ka~kakk~v~kg~~~~~~~k~~~s~~f~~pktl~l~r~pkyprks~p~~~kmd~~~iIk~PliTEKa~~~~E 91 (156)
T 2zkr_s 12 PPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 91 (156)
T ss_dssp ----------------------------------------------------------------CEEEECCSHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhccCCccceeeccccccCCCcccccccCCCCCcccCCCcccCCHHHhHhcccccHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhhhCCC
Q psy6374 241 DNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 305 (305)
Q Consensus 241 dnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANKIGii 305 (305)
+||+|||+||++|||+||++|||+||||+|.+|||||+++|||||||+|.+||++|||+|+||||
T Consensus 92 ~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~kiGii 156 (156)
T 2zkr_s 92 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156 (156)
T ss_dssp HHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC---
T ss_pred hCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 5
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.6e-44 Score=318.54 Aligned_cols=111 Identities=41% Similarity=0.744 Sum_probs=84.4
Q ss_pred eecccccCCCCcccCCCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhcCCeEEEEEeeCCCHHHHHHHHHHHhCC
Q psy6374 189 IRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDI 268 (305)
Q Consensus 189 irts~~F~rPkTl~l~R~PKyprks~prrnklD~yaIIK~PLtTEKAmKkiEdnNtlVFiVDvkANK~QIKqAVKKLYdV 268 (305)
+|+|++|+||+||+|+|+|+|||+ +||+|+||++||+||++|+++|+||+|||+||++|||+|||+|||+||||
T Consensus 84 ~~~s~~F~rPktl~l~r~pKyprk------kMd~ydIIk~PvITEKAmkliE~nNkyvF~Vd~kANK~QIKqAVEkLFdV 157 (198)
T 3bbo_V 84 TTEEAATSQPKTSKKAKKLKYPRR------ILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGV 157 (198)
T ss_dssp --------------------------------CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCC
T ss_pred cccceeeCCCcccccccCCCCccc------cCCHhheeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999998 79999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhhhCCC
Q psy6374 269 NVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 305 (305)
Q Consensus 269 kVaKVNTLIrpdG~KKAyV~LapDyDALDVANKIGii 305 (305)
+|.+|||||+++|||||||+|.+||++|||+|+||||
T Consensus 158 KV~kVNTln~~gg~KKAyVtLaeG~~AID~anKIGii 194 (198)
T 3bbo_V 158 KVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIF 194 (198)
T ss_dssp CEEECCCEEETTTEEECCEEECTTTCTTTHHHHCCCC
T ss_pred ceeEEEeeEcCCCeEEEEEEeCCCCchHHHHHhcccc
Confidence 9999999999999999999999999999999999997
No 6
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.6e-40 Score=258.18 Aligned_cols=86 Identities=47% Similarity=0.791 Sum_probs=83.4
Q ss_pred CCccccccccccchhhhhhhhcCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 220 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 220 lD~yaIIK~PLtTEKAmKkiEdnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
||||+||++||+||++|+++|++|+|+|+||++|||+|||+|||+||||+|.+|||||+|+|||||||+|.+||+|||||
T Consensus 1 md~~~iIk~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp --CCCCEEECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred CChHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCC
Q psy6374 300 NKIGII 305 (305)
Q Consensus 300 NKIGii 305 (305)
|+||||
T Consensus 81 ~kigi~ 86 (86)
T 3j21_T 81 ARLGLF 86 (86)
T ss_dssp HHSSCC
T ss_pred HhhccC
Confidence 999997
No 7
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=100.00 E-value=1.4e-36 Score=239.47 Aligned_cols=84 Identities=43% Similarity=0.623 Sum_probs=80.2
Q ss_pred ccccccccccchhhhhhhhcCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhhh
Q psy6374 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 301 (305)
Q Consensus 222 ~yaIIK~PLtTEKAmKkiEdnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVANK 301 (305)
||+||++|++||++|+++|++|+|+|+||++|||+|||+|||+||||+|.+|||||+++|||||||+|.+||+||||+|+
T Consensus 2 ~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred CcceeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q psy6374 302 IGII 305 (305)
Q Consensus 302 IGii 305 (305)
||||
T Consensus 82 ig~~ 85 (85)
T 1vq8_S 82 IGVF 85 (85)
T ss_dssp C---
T ss_pred hCCC
Confidence 9997
No 8
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=99.96 E-value=9.7e-31 Score=208.67 Aligned_cols=78 Identities=32% Similarity=0.484 Sum_probs=74.4
Q ss_pred CccccccccccchhhhhhhhcCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-------------CCeeeEEE
Q psy6374 221 DAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-------------DGKKKAYV 287 (305)
Q Consensus 221 D~yaIIK~PLtTEKAmKkiEdnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-------------dG~KKAyV 287 (305)
|||+||++||+||++|.++|+ |+|+|+||++|||+|||+|||+||||+|.+|||||++ +|||||||
T Consensus 1 ~~~~iI~~P~iTEKa~~~~e~-n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~V 79 (92)
T 3tve_T 1 TAYDVILAPVLSEKAYAGFAE-GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIV 79 (92)
T ss_dssp CHHHHEEEECCSHHHHTTTTT-TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEE
T ss_pred ChhheecccccCHHHHHHhhC-CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEE
Confidence 789999999999999999998 9999999999999999999999999999999999998 68999999
Q ss_pred EcCCCCcHHHHhh
Q psy6374 288 RLARDYDALDVAN 300 (305)
Q Consensus 288 ~LapDyDALDVAN 300 (305)
+|.+| +.||+++
T Consensus 80 tL~~g-~~Id~f~ 91 (92)
T 3tve_T 80 QVAPG-QKIEALE 91 (92)
T ss_dssp EECTT-CCCTTTC
T ss_pred EcCCC-CcccCCC
Confidence 99999 5699864
No 9
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=99.96 E-value=2.2e-30 Score=207.66 Aligned_cols=81 Identities=28% Similarity=0.466 Sum_probs=75.9
Q ss_pred CCccccccccccchhhhhhhhcCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-------------CeeeEE
Q psy6374 220 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-------------GKKKAY 286 (305)
Q Consensus 220 lD~yaIIK~PLtTEKAmKkiEdnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-------------G~KKAy 286 (305)
||+|+||++|++||++|.++|+|| |+|+||++|||+|||+|||+||||+|.+|||||+++ +|||||
T Consensus 1 m~~~~iI~~PviTEKs~~~~e~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAi 79 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMERGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAI 79 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTTTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEE
T ss_pred CChHhceeccccCHHHHHHHHCCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEE
Confidence 799999999999999999999865 999999999999999999999999999999999986 699999
Q ss_pred EEcCCCCcHHHHhhhh
Q psy6374 287 VRLARDYDALDVANKI 302 (305)
Q Consensus 287 V~LapDyDALDVANKI 302 (305)
|+|.+||+ ||+++.+
T Consensus 80 VtL~~g~~-id~~~~~ 94 (95)
T 2zjr_Q 80 VRLAEGQS-IEALAGQ 94 (95)
T ss_dssp EECCSSCC-CSSTTTC
T ss_pred EEeCCCCe-eecccCC
Confidence 99999999 9998753
No 10
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=99.96 E-value=8.2e-30 Score=203.66 Aligned_cols=77 Identities=35% Similarity=0.508 Sum_probs=73.5
Q ss_pred CCCCccccccccccchhhhhhhhcCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-------------CCeee
Q psy6374 218 NRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-------------DGKKK 284 (305)
Q Consensus 218 nklD~yaIIK~PLtTEKAmKkiEdnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-------------dG~KK 284 (305)
|..++|+||++||+||++|.++|++|+|+|+||++|||+|||+|||+||||+|.+|||||++ +||||
T Consensus 3 ~~~~~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KK 82 (93)
T 3r8s_T 3 REERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKK 82 (93)
T ss_dssp CHHHHHHHEEEECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSSSCCBCCCEEE
T ss_pred chhhHHhhhhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCCccccCCCcEE
Confidence 34679999999999999999999999999999999999999999999999999999999987 78999
Q ss_pred EEEEcCCCCc
Q psy6374 285 AYVRLARDYD 294 (305)
Q Consensus 285 AyV~LapDyD 294 (305)
|||+|.+||+
T Consensus 83 AiVtL~~g~~ 92 (93)
T 3r8s_T 83 AYVTLKEGQN 92 (93)
T ss_dssp EEEECCSCCC
T ss_pred EEEEcCCcCC
Confidence 9999999986
No 11
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.14 E-value=9.9 Score=27.66 Aligned_cols=55 Identities=9% Similarity=0.144 Sum_probs=39.2
Q ss_pred eEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHh
Q psy6374 244 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVA 299 (305)
-||--+....+..+|++.+...|| .|..|..+..+.|.- -+||++....+|....
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 12 LFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHH
Confidence 344445667899999999999777 467888776655543 4899998776655443
No 12
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.53 E-value=4.1 Score=33.27 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=41.3
Q ss_pred CCeEEEEE--eeC-CCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCC-CCcHHHHhhhh
Q psy6374 242 NNTLVFIV--HLQ-ANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLAR-DYDALDVANKI 302 (305)
Q Consensus 242 nNtlVFiV--Dvk-ANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~Lap-DyDALDVANKI 302 (305)
.|.++|+- ... .++.+|+..|.. || +|..|+... |..-+||++.. ..+|.+.+.++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~-~G-~V~~Vd~~~---g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSN-HG-EIKWIDFVR---GAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCS-SC-CEEEEECCT---TCSEEEEEESSCHHHHHHHHHHT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHh-cC-CEEEEEEec---CCCEEEEEECCChHHHHHHHHHh
Confidence 35677776 555 789999999987 77 687777654 33469999998 56778777654
No 13
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.50 E-value=24 Score=25.51 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=33.4
Q ss_pred eEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
+-+|+-+...+..+|++.+.. || .|..|.+ .+..|+ +||++....+|....
T Consensus 16 ~~l~V~n~~~t~~~l~~~F~~-~G-~i~~v~i-~~~~g~--afV~f~~~~~a~~Ai 66 (97)
T 1x5p_A 16 NTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSM-DPPRNC--AFVTYEKMESADQAV 66 (97)
T ss_dssp SEEEEECSSCCHHHHHHHHTT-TS-CEEEEEE-ETTTTE--EEEEESSHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHhh-CC-CEEEEEe-cCCCCE--EEEEECCHHHHHHHH
Confidence 345666778888888887766 44 4556654 355565 899887666554433
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.96 E-value=18 Score=26.09 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=35.1
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHh
Q psy6374 246 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 246 VFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVA 299 (305)
|--+....+..+|++.+.. || .|..|..+..++|. --+||++....+|....
T Consensus 22 v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 22 ISGLPFSCTKEELEEICKA-HG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp EESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHH
Confidence 3334567888999888876 55 47777777665554 34899998766655443
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=54.70 E-value=25 Score=26.56 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=38.7
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.++. || .|..|..+..++|.- -+||++....+|....
T Consensus 4 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 4 YVGNLDKAITEDILKQYFQV-GG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIAL 58 (166)
T ss_dssp EEEEEETTCCHHHHHHHHGG-GS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHH
T ss_pred EECCCCCcCCHHHHHHHHHh-cC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHH
Confidence 55567788999999998876 56 588888877666543 4999998777655544
No 16
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=54.20 E-value=28 Score=24.68 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=35.4
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVA 299 (305)
++...+..+|++.+.. || .|..|..+..++|. --+||++....+|....
T Consensus 24 lp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 24 LEARVREEILYELFLQ-AG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp CCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 4566899999998877 55 57778777666553 25999998877765543
No 17
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.63 E-value=45 Score=23.69 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=36.0
Q ss_pred CeEEEEEeeCCCHHHHHHHHHHHhCCceeeEE-eeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 243 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVN-TLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 243 NtlVFiVDvkANK~QIKqAVKKLYdVkVaKVN-TLIrpdG~KKAyV~LapDyDALDVA 299 (305)
.-||--+....+..+|++.+.. || .|..|. .+..+.... +||++....+|....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~i~~~~~~~~-afV~f~~~~~a~~Ai 71 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQ-YG-VVESCEQVNTDSETAV-VNVTYSSKDQARQAL 71 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHH-HS-CEEEEEEECCSSSSEE-EEEEESSHHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHh-cC-CeEEEEEeecCCCCCE-EEEEECCHHHHHHHH
Confidence 4566667788999999999986 45 366664 333333333 999998776655443
No 18
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.90 E-value=21 Score=26.35 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.7
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.+.. || .|..|..+..++|. --+||++....+|....
T Consensus 19 ~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 19 FVANLDYKVGWKKLKEVFSM-AG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp EEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHH
Confidence 33345566788888887775 45 57777777666553 25889888766655443
No 19
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.66 E-value=55 Score=24.01 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=36.0
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
++-+|+- +...+..+|++.+.. || .|..|..+. ..|+ +||++....+|....
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~-~~g~--afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSP-FG-QIMEIRVFP-EKGY--SFVRFSTHESAAHAI 78 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHH-HS-CEEEEEEET-TTTE--EEEEESSHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeC-CCCE--EEEEECCHHHHHHHH
Confidence 3444554 457899999999986 67 577776553 3454 999998776665544
No 20
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=48.64 E-value=32 Score=29.63 Aligned_cols=56 Identities=9% Similarity=0.183 Sum_probs=40.2
Q ss_pred eEEEEEeeCCCHHHHHHHHHHHhCC-ceeeEEeeeCC-CCee--eEEEEcCCCCcHHHHhh
Q psy6374 244 TLVFIVHLQANKHHIKAAVKKMYDI-NVAKVNTLIRP-DGKK--KAYVRLARDYDALDVAN 300 (305)
Q Consensus 244 tlVFiVDvkANK~QIKqAVKKLYdV-kVaKVNTLIrp-dG~K--KAyV~LapDyDALDVAN 300 (305)
-||--++...+..+|++.|.. ||+ .|..|.++... .|.- =+||.+....+|.....
T Consensus 71 lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 344445567999999999965 786 89999887754 3332 39999998877665443
No 21
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=48.58 E-value=31 Score=27.73 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=43.0
Q ss_pred cchhhhhhhhcCCeEEEEEeeC---CCHHHHHHHHHHHhCCceeeEEe--eeCC--CCeeeEEEEcCCCCcHHHHhhhh
Q psy6374 231 TTESAMKKIEDNNTLVFIVHLQ---ANKHHIKAAVKKMYDINVAKVNT--LIRP--DGKKKAYVRLARDYDALDVANKI 302 (305)
Q Consensus 231 tTEKAmKkiEdnNtlVFiVDvk---ANK~QIKqAVKKLYdVkVaKVNT--LIrp--dG~KKAyV~LapDyDALDVANKI 302 (305)
+.+....++.. .+++|.|.-. -+|.+|+..+-++|+++..-|-. +..- .|.=..|..+ ||.+|.+.++
T Consensus 6 ~~~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 80 (102)
T 1ywx_A 6 ISDRNNPLLQR-REIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI---YNDEKAMATI 80 (102)
T ss_dssp EEEEEETTTTE-EEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHS
T ss_pred EEeeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 34445556654 5788866432 58999999999999997643322 2222 2444455544 6778888765
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.79 E-value=27 Score=25.30 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=35.0
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCC--CC--eeeEEEEcCCCCcHHHHhhhh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRP--DG--KKKAYVRLARDYDALDVANKI 302 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrp--dG--~KKAyV~LapDyDALDVANKI 302 (305)
+....+..+|++.+.. || .|..|..+..+ .| .--+||++....+|......+
T Consensus 23 lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 23 IPFQANQREIRELFST-FG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHc-cC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 4567889999998877 56 57777766542 22 124999998777766554443
No 23
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=46.13 E-value=26 Score=25.40 Aligned_cols=54 Identities=17% Similarity=0.392 Sum_probs=36.6
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVA 299 (305)
+-+|+ +....+..+|++.+.. ||. |..|..+..++|.- -+||++....+|....
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 73 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQP-FGV-IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAI 73 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTT-TSC-EEEEEEEECSSSCEEEEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCC-eEEEEEEECCCCCcCcEEEEEeCCHHHHHHHH
Confidence 33455 4567888999888875 453 77888777666532 4899998776655443
No 24
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=45.26 E-value=34 Score=24.68 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=33.6
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 246 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 246 VFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
|--+....+..+|++.+..+ | .|..|..+..+.|+ +||++....+|....
T Consensus 5 V~nLp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~g~--afV~f~~~~~a~~A~ 54 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYY-G-PLRTVWIARNPPGF--AFVEFEDPRDAEDAV 54 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHH-C-CCSEEEEESSSSSE--EEEECSSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc-C-CeEEEEEeeCCCCE--EEEEECCHHHHHHHH
Confidence 33445678999999998874 5 46666655444454 999998766655443
No 25
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=45.02 E-value=33 Score=26.25 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=39.0
Q ss_pred eEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeee--EEEEcCCCCcHHHHh
Q psy6374 244 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKK--AYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KK--AyV~LapDyDALDVA 299 (305)
-||--++...+..+|++.+.. ||. |..|..+..++|.-+ +||++....+|....
T Consensus 98 l~v~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFSS-FGQ-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred EEEcCCCCcCCHHHHHHHHHh-CCC-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 344445667899999999876 554 778888777776544 999998777665543
No 26
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=44.25 E-value=30 Score=27.59 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=40.7
Q ss_pred hhhhhhhcCCeEEEEEee----CCCHHHHHHHHHHHhCCceeeEEe--eeCC--CCeeeEEEEcCCCCcHHHHhhhh
Q psy6374 234 SAMKKIEDNNTLVFIVHL----QANKHHIKAAVKKMYDINVAKVNT--LIRP--DGKKKAYVRLARDYDALDVANKI 302 (305)
Q Consensus 234 KAmKkiEdnNtlVFiVDv----kANK~QIKqAVKKLYdVkVaKVNT--LIrp--dG~KKAyV~LapDyDALDVANKI 302 (305)
....++.. .+++|.|.- .-+|.+|+..+-++|+++..-|=. +..- .|.=..|..+ ||.+|.+.++
T Consensus 9 ~~N~LL~R-ke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I---Yds~e~~kk~ 81 (98)
T 2g1d_A 9 RDNPILKR-KEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI---YADKPSAMLY 81 (98)
T ss_dssp EECSSSCE-EEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE---ESHHHHHHHH
T ss_pred eecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 33445543 578886644 459999999999999986543322 1111 2344444444 7888888765
No 27
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.89 E-value=34 Score=27.22 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=35.7
Q ss_pred EEEE----EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhh
Q psy6374 245 LVFI----VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 245 lVFi----VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVAN 300 (305)
.+|+ .+...+..+|++.+++ || .|..|... ...| =+||++....||.+-..
T Consensus 27 ~L~V~Ng~L~~~~te~~L~~~F~~-fG-~v~~v~i~-~~rg--faFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 27 SLVVANGGLGNGVSRNQLLPVLEK-CG-LVDALLMP-PNKP--YSFARYRTTEESKRAYV 81 (114)
T ss_dssp EEEEETCTGGGTCCHHHHHHHHHH-HS-CEEEEECC-TTCS--CEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHh-cC-CeEEEEEe-CCCC--EEEEEECCHHHHHHHHH
Confidence 3466 4567899999999987 68 67777543 2234 49999987777665443
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=43.53 E-value=16 Score=26.62 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=35.9
Q ss_pred EEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHH
Q psy6374 248 IVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 248 iVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~K--KAyV~LapDyDALDV 298 (305)
-+....+..+|++.++. ||..|..|..+..+. |.- =|||++....+|...
T Consensus 8 nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~A 60 (91)
T 2lxi_A 8 MLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW 60 (91)
T ss_dssp TCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 35677999999999987 687788887765432 221 299999877766544
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.85 E-value=27 Score=25.01 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=35.2
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CCe--eeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG~--KKAyV~LapDyDALDVA 299 (305)
+-+|+ ++...+..+|++.+.. || .|..|..+..+ .|. --+||++....+|....
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 67 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSA-YG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHH
Confidence 34455 4557899999998876 55 56677665443 222 24999998776655543
No 30
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.67 E-value=30 Score=26.49 Aligned_cols=45 Identities=20% Similarity=0.109 Sum_probs=33.0
Q ss_pred eCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 251 LQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 251 vkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
...+..+|++.|.+ || .|..|+.+.++.|+ +||.+....+|.+..
T Consensus 27 ~~~te~~L~~~F~~-~G-~V~~v~i~~~~rGf--aFVeF~~~~~A~~Ai 71 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YG-EVLNLVLSSKKPGT--AVVEFATVKAAELAV 71 (100)
T ss_dssp CSCCHHHHHHHHHT-TS-CEEEEEEESSSSSE--EEEEESCHHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEccCCCCE--EEEEECCHHHHHHHH
Confidence 46789999988876 56 47777776556675 999998776665543
No 31
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=42.57 E-value=24 Score=26.64 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
+.-||--+....+..+|++.|.. || .|..|+++. +|+ +||.+....+|....
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~--~g~--afV~f~~~~~a~~Ai 68 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYR--DGT--GVVEFVRKEDMTYAV 68 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGG-GS-CEEEEEECT--TSE--EEEEESSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEec--CCE--EEEEECCHHHHHHHH
Confidence 34455556667888888888775 45 466666543 364 889888766554433
No 32
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=42.38 E-value=43 Score=26.75 Aligned_cols=66 Identities=15% Similarity=0.351 Sum_probs=41.2
Q ss_pred hhhhhhhhcCCeEEEEEeeC---CCHHHHHHHHHHHhCCceeeE--EeeeCC--CCeeeEEEEcCCCCcHHHHhhhh
Q psy6374 233 ESAMKKIEDNNTLVFIVHLQ---ANKHHIKAAVKKMYDINVAKV--NTLIRP--DGKKKAYVRLARDYDALDVANKI 302 (305)
Q Consensus 233 EKAmKkiEdnNtlVFiVDvk---ANK~QIKqAVKKLYdVkVaKV--NTLIrp--dG~KKAyV~LapDyDALDVANKI 302 (305)
+....++.. .+++|.|.-. -+|.+|+..+-++|+++..-| -.+..- .|.=..|..+ ||.+|.+.++
T Consensus 8 ~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I---Yds~e~akk~ 80 (101)
T 1xn9_A 8 DKKNPLLNR-RELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL---YEDADRMKQV 80 (101)
T ss_dssp EEEETTTTE-EEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE---CSCHHHHHHH
T ss_pred eeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 334455553 5788866533 589999999999999875433 222222 3444455544 6778888765
No 33
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=41.96 E-value=44 Score=27.03 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=41.1
Q ss_pred hhhhhhcCCeEEEEEee----CCCHHHHHHHHHHHhCCceeeEEe--eeCC--CCeeeEEEEcCCCCcHHHHhhhh
Q psy6374 235 AMKKIEDNNTLVFIVHL----QANKHHIKAAVKKMYDINVAKVNT--LIRP--DGKKKAYVRLARDYDALDVANKI 302 (305)
Q Consensus 235 AmKkiEdnNtlVFiVDv----kANK~QIKqAVKKLYdVkVaKVNT--LIrp--dG~KKAyV~LapDyDALDVANKI 302 (305)
...++.. .+++|.|.- .-+|.+|+..+-++|+++..-|-. +..- .|.=..|..+ ||.+|.+.++
T Consensus 18 ~N~LL~R-ke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I---Yds~e~akk~ 89 (107)
T 2v94_A 18 ENKLIGR-KEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY---YYDKDRMLYI 89 (107)
T ss_dssp EETTTTE-EEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE---ESSHHHHHHH
T ss_pred ecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---ECCHHHHHhh
Confidence 3445553 578886654 357999999999999996554422 2222 2444455544 6778888765
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=41.42 E-value=28 Score=29.04 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=36.4
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVAN 300 (305)
++...+..+|++.+.. ||+.|..|..+-+..| -+||++....+|....+
T Consensus 159 lp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~g--~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 159 IPPSVSEEDLKVLFSS-NGGVVKGFKFFQKDRK--MALIQMGSVEEAVQALI 207 (229)
T ss_dssp CCTTCCHHHHHHHHHT-TSCCEEEEEECSSSTT--CEEEEESSHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHH-cCCCeeEEEEEECCCc--EEEEEECCHHHHHHHHH
Confidence 4556899999998877 5878888877544445 59999988777665544
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=41.31 E-value=30 Score=25.08 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=35.2
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVA 299 (305)
+-+|+ +....+..+|++.+..+ | .|..|..+..+. |. --+||++....+|....
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~-G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEF-G-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHH-S-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-C-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 34455 44578999999999884 5 466777665433 11 24999998766655443
No 36
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=40.52 E-value=55 Score=22.78 Aligned_cols=54 Identities=15% Similarity=0.339 Sum_probs=36.4
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~K--KAyV~LapDyDALDVA 299 (305)
+-+|+ ++...+..+|++.+.. || .|..|..+..++ |.- =+||++....+|....
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTK-FG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHHH
Confidence 33455 5567899999988865 55 677887776553 332 3999998776655433
No 37
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.44 E-value=45 Score=24.28 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=36.3
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeee------CCCCeeeEEEEcCCCCcHHHHhh
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLI------RPDGKKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLI------rpdG~KKAyV~LapDyDALDVAN 300 (305)
++-+|+- ....+..+|++.+.. ||-.|..|..+. +..| -+||++....+|.....
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g--~afV~f~~~~~A~~A~~ 70 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRG--FAFVEYESHRAAAMARR 70 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCC--EEEEEESSHHHHHHHHT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCc--EEEEEecCHHHHHHHHH
Confidence 3444554 456899999999988 454477776552 2234 49999987766655444
No 38
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=40.40 E-value=83 Score=27.03 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=37.8
Q ss_pred CeEEEEEee----CCCHHHHHHHHHHHhCCceeeEEe--eeCC--CCeeeEEEEcCCCCcHHHHhhhh
Q psy6374 243 NTLVFIVHL----QANKHHIKAAVKKMYDINVAKVNT--LIRP--DGKKKAYVRLARDYDALDVANKI 302 (305)
Q Consensus 243 NtlVFiVDv----kANK~QIKqAVKKLYdVkVaKVNT--LIrp--dG~KKAyV~LapDyDALDVANKI 302 (305)
.+++|.|.- .-+|.+|+..+-++|+++..-|=+ +..- .|.=..|..+ ||.+|.+.++
T Consensus 19 kE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I---YDs~e~aKk~ 83 (149)
T 2xzm_P 19 RQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV---YDNQQYLLKY 83 (149)
T ss_dssp EEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE---ESCHHHHHHH
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE---eCCHHHHHhh
Confidence 578886644 678999999999999996544422 2222 2444455544 6778887765
No 39
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=39.20 E-value=23 Score=25.73 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=37.9
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHH
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDAL 296 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDAL 296 (305)
++-||--+..+.+..+|++.+.+ || .|..|+.+....|+ +||++....+|.
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~-~G-~i~~v~i~~~srGf--aFV~F~~~~~A~ 62 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQ-YG-EVVDVFIPKPFRAF--AFVTFADDKVAQ 62 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCSSCCSE--EEEEESCHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEeeCCCCE--EEEEECCHHHHH
Confidence 34455556678899999998887 66 47788877666676 999998766654
No 40
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.52 E-value=30 Score=25.38 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=30.1
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
+....+..+|++.|.. || .|..|.........--+||++....+|....
T Consensus 30 Lp~~~t~~~l~~~F~~-~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 30 LPPDIRTKDIEDVFYK-YG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCTTCCHHHHHHHHGG-GS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHH
Confidence 4456788888888877 44 3555555332222235899988776655443
No 41
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.39 E-value=49 Score=23.28 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=35.6
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.+.. || .|..|..+..+. |. --+||++....+|....
T Consensus 19 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 19 GVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp EEESCCSSCCHHHHHHHHHT-TS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHH
Confidence 44445667899999998877 56 477777766544 22 25999998766655443
No 42
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.35 E-value=46 Score=24.59 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=35.9
Q ss_pred eEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVA 299 (305)
-||--+....+..+|++.|.. || .|..|..+..++ |. --+||++....+|....
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 28 VFCMQLAARIRPRDLEDFFSA-VG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 344445667899999988866 55 577777765443 21 24999998777765543
No 43
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.03 E-value=34 Score=25.31 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=30.2
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHH
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDV 298 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDV 298 (305)
||--+....+..+|++.|.. || .|..|+++. +|+ +||++....+|...
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~~~i~~--~g~--afV~f~~~~~a~~A 66 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYR--DGT--GVVEFVRKEDMTYA 66 (108)
T ss_dssp EEESCCSSCCHHHHHHHHGG-GS-CEEEEEEET--TTE--EEEEESSHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEec--CCE--EEEEECCHHHHHHH
Confidence 33334556788888887765 45 466666543 364 88888766555443
No 44
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=36.42 E-value=34 Score=27.28 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=37.6
Q ss_pred eEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHhh
Q psy6374 244 TLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 244 tlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVAN 300 (305)
..+|+- ....+..+|++.+.. ||..|..|..+-...| -+||++....+|.....
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~~~g--~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQKDRK--MALIQMGSVEEAVQALI 176 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEESSTTSS--CEEEECSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeCCCc--EEEEEeCCHHHHHHHHH
Confidence 334544 456899999999987 5777888876543444 59999987776655443
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=36.27 E-value=38 Score=23.42 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=35.2
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCC----eeeEEEEcCCCCcHHHHhh
Q psy6374 246 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG----KKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 246 VFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG----~KKAyV~LapDyDALDVAN 300 (305)
|--++...+..+|++.+.. || .|..|..+..++. .--+||++....+|.....
T Consensus 9 V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFST-YG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp EECCCTTCCHHHHHHHHHT-TS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 3345667899999998876 55 5666766554421 2259999987777655443
No 46
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=36.16 E-value=32 Score=26.12 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=35.9
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVA 299 (305)
.-+|+ ++...+..+|++.+.. ||. |..|..+....|. --+||++....+|....
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai 65 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGK-HGP-ISEVLLIKDRTSKSRGFAFITFENPADAKNAA 65 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHT-SSC-CSEEEEECSTTTTCCCEEEEECSSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 33455 4456899999998887 453 6777776654332 24999998776655443
No 47
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=35.97 E-value=89 Score=22.43 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=37.1
Q ss_pred EEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHhh
Q psy6374 245 LVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 245 lVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVAN 300 (305)
-+|+ +....+..+|++.+.. || .|..|..+..+.|. --+||.+....+|.....
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 11 TVFVGGIDVRMDETEIRSFFAR-YG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 3454 4557899999998866 55 56777777655543 248999998877655433
No 48
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=35.85 E-value=38 Score=25.28 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=35.1
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHhh
Q psy6374 246 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 246 VFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVAN 300 (305)
|--++...+..+|++.|.. || .|..|+.+..++ |. --+||++....+|.....
T Consensus 30 V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 30 IGGLSWQTTQEGLREYFGQ-FG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp EESCCTTCCHHHHHHHHTT-TS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHc-cC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3335668899999988876 55 467777665442 21 149999987766655443
No 49
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=35.82 E-value=37 Score=25.48 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=34.9
Q ss_pred eEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CC--eeeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG--~KKAyV~LapDyDALDVA 299 (305)
+-+|+- ....+..+|++.|.. || .|..|..+..+ .| .--+||++....+|....
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 444554 457889999998876 56 56677665543 12 124999998776655443
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=35.71 E-value=70 Score=23.60 Aligned_cols=53 Identities=9% Similarity=0.177 Sum_probs=33.5
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CCee--eEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG~K--KAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.|.. || .|..|..+..+ .|.- -+||++....+|....
T Consensus 29 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (115)
T 2cpz_A 29 FIYHLPQEFGDQDLLQMFMP-FG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 84 (115)
T ss_dssp EEESCCSSCCHHHHHHHHGG-GS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHH
Confidence 33335567888898888875 44 25666666554 2322 3899988766655444
No 51
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.64 E-value=52 Score=24.73 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=36.6
Q ss_pred eEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHH
Q psy6374 244 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 244 tlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDV 298 (305)
-||--+....+..+|++.+.. || .|..|+.+..++|.- =+||++....+|...
T Consensus 14 lfV~~Lp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~A 68 (103)
T 1s79_A 14 VYIKGFPTDATLDDIKEWLED-KG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF 68 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-SS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHhh-cC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHH
Confidence 444455678999999998876 67 578888776544221 399999876665443
No 52
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.29 E-value=25 Score=27.77 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=40.0
Q ss_pred CCeEEEEE--eeCCCHHHHHHHHHHHhCC--ceeeEEeeeCCCCee--eEEEEcCCCCcHHHH
Q psy6374 242 NNTLVFIV--HLQANKHHIKAAVKKMYDI--NVAKVNTLIRPDGKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 242 nNtlVFiV--DvkANK~QIKqAVKKLYdV--kVaKVNTLIrpdG~K--KAyV~LapDyDALDV 298 (305)
++..+|+= .-.++..+|++.|+.+..| .|..|..+...+|.- -+||.+....||...
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 34555654 4479999999999986555 377888776666543 499999877665543
No 53
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.18 E-value=50 Score=23.73 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=35.2
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-C--eeeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G--~KKAyV~LapDyDALDVA 299 (305)
.-+|+ ++...+..+|++.+..+ | .|..|..+..+. | .--+||++....+|....
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~-G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKY-G-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHH-S-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhc-C-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHH
Confidence 33455 45578999999999875 4 356666655432 1 125999998776665544
No 54
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.91 E-value=26 Score=26.15 Aligned_cols=56 Identities=11% Similarity=0.237 Sum_probs=36.1
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCC-eeeEEEEcCCCCcHHHHhh
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-KKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG-~KKAyV~LapDyDALDVAN 300 (305)
++-+|+- ....+..+|++.+.. || .|..|..+...++ .--+||++....+|.....
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGG-TC-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred CCEEEEECCCCcCCHHHHHHHHHh-cC-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 3444554 457889999988876 45 4666766544332 2249999998777655443
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.56 E-value=43 Score=24.20 Aligned_cols=52 Identities=10% Similarity=0.243 Sum_probs=31.9
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.+.. || .|..|..+.. .|.- -+||++....+|....
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFSP-FG-TITSAKVMME-GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp EEECCCTTCCHHHHHHTTTT-TS-CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHH
Confidence 33334556788888877765 45 3667766654 4332 4888887665554443
No 56
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=34.17 E-value=45 Score=22.99 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=35.1
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CCee--eEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG~K--KAyV~LapDyDALDVA 299 (305)
+-+|+ +....+..+|++.+.. || .|..|..+..+ .|.. -+||++....+|....
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 66 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGG-GS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHhc-cC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHH
Confidence 33455 4457899999998876 56 56677665442 3332 3999998776655443
No 57
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=34.00 E-value=61 Score=23.94 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=36.3
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~K--KAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.+.. || .|..|..+..+. |.- =+||++....+|....
T Consensus 23 fV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 78 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSS-IG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHHH
Confidence 33345678999999999876 56 577887766443 433 3899998776665443
No 58
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=33.92 E-value=47 Score=25.73 Aligned_cols=47 Identities=6% Similarity=0.079 Sum_probs=32.0
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeee-CCCCeeeEEEEcCCCCcHHHH
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLI-RPDGKKKAYVRLARDYDALDV 298 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLI-rpdG~KKAyV~LapDyDALDV 298 (305)
+..+.+..+|++.+.. ||..|..|.... ++.|+ +||.+....||..-
T Consensus 36 Lp~~~te~dL~~~F~~-~G~~v~~v~i~~~~~rGf--aFV~F~~~e~A~~A 83 (111)
T 2jvr_A 36 LPEGCSWQDLKDLARE-NSLETTFSSVNTRDFDGT--GALEFPSEEILVEA 83 (111)
T ss_dssp SSCCCCHHHHHHHHHH-HTCCCSEEECSSCSSSCC--EEEEESSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-hCCeeEEEEEEcCCCCCE--EEEEECCHHHHHHH
Confidence 4456889999998887 575566666532 34564 99999876665443
No 59
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.73 E-value=59 Score=23.45 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=35.3
Q ss_pred EEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHhh
Q psy6374 245 LVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 245 lVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVAN 300 (305)
-+|+- ....+..+|++.+.. || .|..|..+..+. |. --+||++....+|.....
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 15 TLKVDNLTYRTSPDSLRRVFEK-YG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 34554 456889999888876 45 466776665433 21 249999998877665543
No 60
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=33.24 E-value=90 Score=25.89 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=37.3
Q ss_pred CeEEEEEee---CCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 243 NTLVFIVHL---QANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 243 NtlVFiVDv---kANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
+.-+|+-+. ..+..+|++.++. ||. |..|..+....|+ +||++....+|....
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~-~G~-i~~v~i~~~~~g~--afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLAM 89 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHH-HTC-EEEEEECCTTSCC--EEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-CCC-eEEEEEEECCCCE--EEEEECCHHHHHHHH
Confidence 344566554 6799999998876 554 7777777665565 999998776655443
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=33.21 E-value=67 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=35.6
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVA 299 (305)
+-+|+ +....+..+|++.+.. || .|..|..+..+. |. --+||++....+|....
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 82 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 82 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHH
Confidence 34455 4556899999988876 45 577777765543 32 24999998776655443
No 62
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.08 E-value=64 Score=23.05 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=31.2
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.+.. || .|..|..+. ..| -+||++....+|....
T Consensus 21 ~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~~~~-~~g--~afV~f~~~~~A~~A~ 70 (97)
T 1why_A 21 WVGGLGPNTSLAALAREFDR-FG-SIRTIDHVK-GDS--FAYIQYESLDAAQAAC 70 (97)
T ss_dssp EEECCCSSCCHHHHHHHHHT-TS-CEEEEEECS-SSC--CEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeC-CCC--EEEEEECCHHHHHHHH
Confidence 33335567788888888776 45 355665442 234 5899988766655443
No 63
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=32.73 E-value=55 Score=23.76 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 467889999999999999999999999998886654
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=32.61 E-value=45 Score=25.09 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=35.7
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHH
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDV 298 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDV 298 (305)
++-+|+- ....+..+|++.+.. || .|..|..+..+.|. --+||++....+|...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 92 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKA 92 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHT-TS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 3445654 456899999998887 55 46677766544332 2599999876665543
No 65
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=32.24 E-value=50 Score=27.25 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=36.7
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHh
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVA 299 (305)
++-+||- +...+..+|++.|.. || .|..|..+..+.|. --|||.+....+|....
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai 146 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAM 146 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHH-TS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHH
Confidence 4555664 456899999999988 55 45677665544332 24999998776655443
No 66
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=31.99 E-value=44 Score=26.01 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=34.1
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
++...+..+|++.|.. || .|..|..+..+.|+ +||++....+|....
T Consensus 81 l~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~--afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 81 LGNNGNKTELERAFGY-YG-PLRSVWVARNPPGF--AFVEFEDPRDAADAV 127 (150)
T ss_dssp CCSCCSCHHHHHHHHH-HS-CEEEEEECSSSCSE--EEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-hC-CEEEEEEeeCCCcE--EEEEECCHHHHHHHH
Confidence 4567889999999987 56 57777776555565 999998776655443
No 67
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=31.83 E-value=49 Score=24.87 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=36.1
Q ss_pred CeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee-eEEEEcCCCCcHHHH
Q psy6374 243 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK-KAYVRLARDYDALDV 298 (305)
Q Consensus 243 NtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K-KAyV~LapDyDALDV 298 (305)
|-||=-++...+..+|++.+.. || .|..|.++...++.| =+||++....+|...
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGSKGYGFVHFETQEAAERA 61 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHhc-cC-CEEEEEEeecCCCCCceEEEEECCHHHHHHH
Confidence 3444446667899999998876 56 477777766544322 389999876665443
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=31.63 E-value=67 Score=24.44 Aligned_cols=55 Identities=7% Similarity=0.249 Sum_probs=38.1
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHhh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVAN 300 (305)
+-+|+ ++...+..+|++.|.. || .|..|..+..++ |. --+||++....+|.....
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 102 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFER-YG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIA 102 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHH-HS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34455 5567899999999988 45 477888776554 32 249999987776655443
No 69
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=31.48 E-value=74 Score=22.99 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=36.9
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHh
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVA 299 (305)
+.-+|+- ....+..+|++.|.. || .|..|..+..+.|.- -+||++....+|....
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 87 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAE-FG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAM 87 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHH
Confidence 4455654 456889999988876 55 466777776655532 5899998766655443
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.27 E-value=71 Score=22.72 Aligned_cols=54 Identities=9% Similarity=0.182 Sum_probs=35.7
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC--C----eeeEEEEcCCCCcHHHHhh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD--G----KKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd--G----~KKAyV~LapDyDALDVAN 300 (305)
||--+....+..+|++.+.. || .|..|..+..++ | .--+||++....+|.....
T Consensus 9 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~ 68 (98)
T 2cpf_A 9 FIKNLNFSTTEETLKGVFSK-VG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 68 (98)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHH
Confidence 33345567899999999876 45 466777665443 2 2359999987766655443
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.27 E-value=29 Score=25.26 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=34.9
Q ss_pred EEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC--Cee--eEEEEcCCCCcHHHH
Q psy6374 245 LVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD--GKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 245 lVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd--G~K--KAyV~LapDyDALDV 298 (305)
-+|+ +....+..+|++.+.. || |..|..+..++ |.- -+||.+....+|...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 17 TAFLGNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHTTT-SC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHH-CC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 3444 4567899999988876 57 88888776553 221 499999876665443
No 72
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=31.11 E-value=59 Score=24.65 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=35.1
Q ss_pred eEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHH
Q psy6374 244 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 244 tlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~K--KAyV~LapDyDALDV 298 (305)
-||.-++...+..+|++.+.+ || .|..|+.+..+. |.- =+||++....+|...
T Consensus 9 lfV~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~A 64 (110)
T 3s8s_A 9 VTFARLNDNVRETFLKDMCRK-YG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKET 64 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHH
Confidence 445556667888888888765 55 577888776554 322 388888866665443
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.84 E-value=33 Score=25.54 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=33.6
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHH
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDV 298 (305)
+...++..+|++.+.. |++ ..|..+..++|.- -+||.+....+|...
T Consensus 23 Lp~~~te~~l~~~F~~-~G~--~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 71 (102)
T 1wez_A 23 LPYRATENDIYNFFSP-LNP--MRVHIEIGPDGRVTGEADVEFATHEDAVAA 71 (102)
T ss_dssp CCTTCCHHHHHHSSCS-CCC--SEEEEEESSSSCEEEEEEEECSSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-cCc--eEEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 4557889999887776 673 3888877766644 499999977765543
No 74
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=30.82 E-value=67 Score=21.72 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|...+++.+.....+.
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 457889999999999999999999999988877654
No 75
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=30.56 E-value=84 Score=22.53 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 468899999999999999999999999998876544
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.50 E-value=54 Score=23.09 Aligned_cols=46 Identities=4% Similarity=0.196 Sum_probs=32.6
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHH
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALD 297 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALD 297 (305)
+....+..+|++.+..+ .|..|..+...+|. --|||.+....+|..
T Consensus 18 Lp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 18 APFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp CCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCCCHHHHHHHHhhC---CceEEEEEECCCCCCceEEEEEECCHHHHHH
Confidence 45678999999988875 56777777665553 259999986655443
No 77
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.50 E-value=48 Score=23.92 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=32.7
Q ss_pred EEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCC-eeeEEEEcCCCCcHHHHh
Q psy6374 245 LVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-KKKAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG-~KKAyV~LapDyDALDVA 299 (305)
-+|+- ....+..+|++.+.. || .|..|..+..+++ .--+||++....+|....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGG-TS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHH
Confidence 33443 446788888887776 44 4666766654433 225899988766655443
No 78
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.16 E-value=40 Score=24.26 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=30.9
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVA 299 (305)
+....+..+|++.+.. || .|..|..+..+. |. --+||++....+|....
T Consensus 20 Lp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2cqb_A 20 LAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71 (102)
T ss_dssp CCSSCCHHHHHHHHTT-TS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHhhc-cC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 5567888888888877 44 456666554322 21 24899888666655443
No 79
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.78 E-value=62 Score=22.80 Aligned_cols=53 Identities=9% Similarity=0.271 Sum_probs=34.3
Q ss_pred EEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-C--eeeEEEEcCCCCcHHHHh
Q psy6374 245 LVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G--~KKAyV~LapDyDALDVA 299 (305)
-+|+- +...+..+|++.+.. || .|..|..+..++ | .--+||++....+|....
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 64 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEP-FG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 33544 456889999988876 45 477777665443 1 125999998776655443
No 80
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.67 E-value=1e+02 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=33.2
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~K--KAyV~LapDyDALDVA 299 (305)
+....+..+|++.+.. || .|..|..+..+. |.- -+||++....+|....
T Consensus 23 lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 23 LPWKTTEQDLKEYFST-FG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCSSCCHHHHHHHHGG-GS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHH
Confidence 4567889999988876 55 477777766543 322 4899998766655443
No 81
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=28.54 E-value=41 Score=26.86 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=37.1
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHh
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVA 299 (305)
..+|+ +...++..+|++.|..+ +|....|.++..++|.- -+||.+....||....
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 44566 45578999999988875 54323777766554421 4999999887765543
No 82
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=27.96 E-value=90 Score=21.76 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
.+++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 468889999999999999999999999998875543
No 83
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=27.85 E-value=1e+02 Score=21.24 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=35.1
Q ss_pred EEEEEeeCCCHHHHHHHHHHHh---CC------ceeeEEeeeCCCCeeeEEEEcCCCCcHHH
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMY---DI------NVAKVNTLIRPDGKKKAYVRLARDYDALD 297 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLY---dV------kVaKVNTLIrpdG~KKAyV~LapDyDALD 297 (305)
||--++...+..+|++.+..+. |+ .|..|.++ +..|+ +||.+....+|..
T Consensus 10 ~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~--afV~f~~~~~a~~ 68 (87)
T 2hzc_A 10 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNF--AFLEFRSVDETTQ 68 (87)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSE--EEEEESSHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcE--EEEEcCCHHHHHH
Confidence 3344556789999999998863 65 67777765 33454 9999987666543
No 84
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.85 E-value=71 Score=23.17 Aligned_cols=50 Identities=12% Similarity=0.323 Sum_probs=33.0
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-C--eeeEEEEcCCCCcHHHHhh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G--~KKAyV~LapDyDALDVAN 300 (305)
+....+..+|++.|.. || .|..|..+..+. | .--+||++....+|.....
T Consensus 23 Lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 23 LSFDSEEEALGEVLQQ-FG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHH
Confidence 4557899999998876 55 466776664432 1 1249999987766555443
No 85
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=27.77 E-value=81 Score=21.28 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.3
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|...+++.+.....+.
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 457889999999999999999999999988877654
No 86
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.75 E-value=70 Score=23.11 Aligned_cols=49 Identities=8% Similarity=0.161 Sum_probs=34.4
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVA 299 (305)
++...+..+|++.|.. || .|..|.++..+. |. --+||++....+|....
T Consensus 24 lp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQ-YG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHH
Confidence 4457889999998877 55 577888776543 22 24999999877765443
No 87
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=27.68 E-value=70 Score=22.36 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 467889999999999999999999999998886554
No 88
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=27.61 E-value=2e+02 Score=21.79 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=39.1
Q ss_pred CeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CCee--eEEEEcCCCCcHHHHhh
Q psy6374 243 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVAN 300 (305)
Q Consensus 243 NtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG~K--KAyV~LapDyDALDVAN 300 (305)
.-||--+....+..+|++.+.. || .|..|..+..+ +|.- -+||++....+|.....
T Consensus 96 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 96 KLFIGGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred EEEEEcCCCcCCHHHHHHHHHh-cC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 3444445667899999999986 55 46777777664 4433 39999998887766544
No 89
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=27.48 E-value=1.5e+02 Score=23.13 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=38.0
Q ss_pred eEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CC--eeeEEEEcCCCCcHHHHhh
Q psy6374 244 TLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVAN 300 (305)
Q Consensus 244 tlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG--~KKAyV~LapDyDALDVAN 300 (305)
.-+|+- ....+..+|++.+.. || .|..|..+..+ .| .--+||++....+|.....
T Consensus 115 ~~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 115 HKLFIGGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHT-BS-CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH-cC-CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 344554 456899999999987 55 46778777654 33 2349999998887765543
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.31 E-value=50 Score=24.31 Aligned_cols=47 Identities=13% Similarity=0.288 Sum_probs=28.1
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHH
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALD 297 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALD 297 (305)
+....+..+|++.+.. || .|..|..+..+.|.- -+||++....+|..
T Consensus 33 lp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~ 81 (114)
T 1x5o_A 33 LPLSMDEQELENMLKP-FG-QVISTRILRDSSGTSRGVGFARMESTEKCEA 81 (114)
T ss_dssp CCTTCCHHHHHHTTTT-TS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCcceEEEEEECCHHHHHH
Confidence 4456777777776655 34 466666665544432 37888876555443
No 91
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.05 E-value=23 Score=25.04 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=31.7
Q ss_pred EEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHH
Q psy6374 248 IVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDAL 296 (305)
Q Consensus 248 iVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDAL 296 (305)
-+....+..+|++.+.. || .|..|+.+....|+ +||.+....+|.
T Consensus 12 nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~g~--afV~f~~~~~a~ 56 (88)
T 1wf0_A 12 RCTGDMTEDELREFFSQ-YG-DVMDVFIPKPFRAF--AFVTFADDQIAQ 56 (88)
T ss_dssp SCCSSSCHHHHHHHSTT-TS-CCCEEECCSSCCSC--CEEECSCHHHHH
T ss_pred CCCCCCCHHHHHHHHHH-cC-CeeEEEEecCCCCE--EEEEECCHHHHH
Confidence 35667889999887765 45 36777766555565 999998766653
No 92
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.58 E-value=41 Score=25.86 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=35.3
Q ss_pred EEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHH
Q psy6374 245 LVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 245 lVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDV 298 (305)
.+|+ +.-.++..+|++.++.+ .|..|..+..++|.- -+||.+....||...
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 72 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 72 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTTCCCCSEEEEECSSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCCCCCCeEEEEEECCHHHHHHH
Confidence 3455 45578999999988875 467787776555432 499999877665543
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.41 E-value=81 Score=22.17 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=29.6
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
+....+..+|++.+.. || .|..|..+ .|+ +||++....+|....
T Consensus 16 lp~~~t~~~l~~~F~~-~G-~i~~v~~~---~g~--afV~f~~~~~A~~A~ 59 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQ-YG-KVLECDII---KNY--GFVHIEDKTAAEDAI 59 (90)
T ss_dssp CCSSCCHHHHHHHHHT-SS-CEEEEEEE---TTE--EEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-CC-CEEEEEEE---CCE--EEEEECCHHHHHHHH
Confidence 4556888888888876 45 45666554 454 899998766655443
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.39 E-value=79 Score=23.34 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=32.1
Q ss_pred EEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHH
Q psy6374 248 IVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDV 298 (305)
Q Consensus 248 iVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDV 298 (305)
-++...+..+|++.|.. ||. |..|.++..+. |. --+||++....+|...
T Consensus 24 nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 24 GLPYHTTDASLRKYFEG-FGD-IEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CCCSSCCHHHHHHHHHT-TSC-EEEEEESCCSSSCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh-CCC-eeEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 34567899999998876 553 66777665432 21 1499999866665443
No 95
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=26.25 E-value=59 Score=27.62 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=33.8
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVA 299 (305)
+....+..+|.+.+.. ||+.|..|..+...+|. --+||.+....+|....
T Consensus 125 lp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp CCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHH
Confidence 4457899999999988 78788888877654332 23999998776655543
No 96
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=26.06 E-value=71 Score=23.74 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=31.2
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
.+++.|.|+...+=.++|+.|+..++|.+.....+.
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 468889999999999999999999999998876553
No 97
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=26.05 E-value=91 Score=21.67 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 468889999999999999999999999998876553
No 98
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=25.69 E-value=88 Score=22.70 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+||.+.....+.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 468889999999999999999999999998876554
No 99
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=25.59 E-value=76 Score=22.37 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.1
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 468899999999999999999999999988775543
No 100
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.98 E-value=74 Score=22.50 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=31.2
Q ss_pred eEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
+-+|+- +...+..+|++.+.. || .|..|..+ .| -+||++....+|....
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~v~~~---~~--~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEE-YG-PVIECDIV---KD--YAFVHMERAEDAVEAI 61 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHT-TS-CCCEEEEC---SS--EEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEE---CC--EEEEEECCHHHHHHHH
Confidence 444553 456788888888877 55 35566554 22 5889888666655443
No 101
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.93 E-value=56 Score=23.65 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=35.7
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHH
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDV 298 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDV 298 (305)
.-+|+ +....+..+|++.+..+ + |..|..+..++ |. =-+||++....+|...
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~-g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDL-S--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTS-C--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhC-C--ceEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 34455 45578999999988875 6 88888876653 22 2499999876665443
No 102
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=24.87 E-value=1.2e+02 Score=25.24 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=35.0
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHhh
Q psy6374 246 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVAN 300 (305)
Q Consensus 246 VFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVAN 300 (305)
|--+....+..+|++.+.. ||- |..|..+...+|.- =+||.+....+|.....
T Consensus 114 V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~ 168 (193)
T 2voo_A 114 IKGFPTDATLDDIKEWLED-KGQ-VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 168 (193)
T ss_dssp EECCCTTCCHHHHHHHHTT-SCC-EEEEEEEECTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ecCCCCcCCHHHHHHHHhc-CCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 3334567889999888876 563 77777665444432 48999987766655443
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.73 E-value=1.2e+02 Score=21.69 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=34.9
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCCC-eeeEEEEcCCCCcHHHH
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-KKKAYVRLARDYDALDV 298 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG-~KKAyV~LapDyDALDV 298 (305)
++-+|+- ....+..+|++.+.. || .|..|..+...++ .--+||++....+|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQ-IG-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 71 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHH-HS-CEEEEEEECCCCSSCCEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCCEEEEEECCHHHHHHH
Confidence 4445664 456899999999877 45 4667766554332 22599999876665443
No 104
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.35 E-value=82 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.2
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
.+++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 568889999999999999999999999998876544
No 105
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=24.26 E-value=1.3e+02 Score=21.48 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=31.8
Q ss_pred cCCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 241 DNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 241 dnNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
+.+++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 26 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 26 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3568889999999999999999999999998875543
No 106
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=24.17 E-value=1.7e+02 Score=22.76 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=37.2
Q ss_pred EEEEEeeCCCHHHHHHHHHHH---hCC------ceeeEEeeeCCCCeeeEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKM---YDI------NVAKVNTLIRPDGKKKAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKL---YdV------kVaKVNTLIrpdG~KKAyV~LapDyDALDVA 299 (305)
||--+....+..+|++.+..+ +|+ .|..+++. +..|+ +||.+....+|....
T Consensus 8 ~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~--afV~F~~~~~A~~Al 68 (198)
T 2yh0_A 8 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNF--AFLEFRSVDETTQAM 68 (198)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTE--EEEEESCSHHHHHHG
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCE--EEEEeCCHHHHHHHH
Confidence 344466789999999999886 265 67777764 45565 999999877765543
No 107
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=23.81 E-value=1.4e+02 Score=25.11 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=39.2
Q ss_pred hhhhcCCeEEEEEee----CCCHHHHHHHHHHHhCCceeeE--EeeeCC--CCeeeEEEEcCCCCcHHHHhhhh
Q psy6374 237 KKIEDNNTLVFIVHL----QANKHHIKAAVKKMYDINVAKV--NTLIRP--DGKKKAYVRLARDYDALDVANKI 302 (305)
Q Consensus 237 KkiEdnNtlVFiVDv----kANK~QIKqAVKKLYdVkVaKV--NTLIrp--dG~KKAyV~LapDyDALDVANKI 302 (305)
.++.. .+++|.|.- ..+|.||+..+-++|+++..-| --+... .|.=..|..+ ||.+|.+.++
T Consensus 16 ~LL~R-ke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I---Yds~d~akk~ 85 (135)
T 3u5c_Y 16 PLLAR-KQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV---YNSVAEAKKF 85 (135)
T ss_dssp GGGTE-EEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE---ESSHHHHHHH
T ss_pred cCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE---eCCHHHHHhc
Confidence 44543 578887754 3679999999999999864333 333322 2333444444 6778887664
No 108
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.60 E-value=83 Score=22.63 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=33.1
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHhh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVAN 300 (305)
++...+..+|++.+.. || .|..|..+..+. |. --+||++....+|.....
T Consensus 23 lp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 23 LDEKVSEPLLWELFLQ-AG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHH
Confidence 4557889999988877 45 567777665442 21 149999987766655443
No 109
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=23.53 E-value=1e+02 Score=24.43 Aligned_cols=51 Identities=16% Similarity=0.336 Sum_probs=35.9
Q ss_pred EEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHhh
Q psy6374 248 IVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 248 iVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVAN 300 (305)
-++...+..+|++.+.. || .|..|..+..+. |. --+||++....+|.....
T Consensus 132 nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 132 SVHQDLSDDDIKSVFEA-FG-KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp CCCTTCCHHHHHHHHTT-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHhc-cC-CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 35556899999998876 56 677888776542 22 259999987777665543
No 110
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=22.79 E-value=97 Score=29.42 Aligned_cols=53 Identities=13% Similarity=0.318 Sum_probs=33.1
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CCee--eEEEEcCCCCcHHHHh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG~K--KAyV~LapDyDALDVA 299 (305)
||--+....+..+|.+.|.. || .|..|+++..+ .|.- -+||.+....+|....
T Consensus 106 fV~nL~~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 161 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFEV-YG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAY 161 (437)
T ss_pred EEeCCCCCCCHHHHHHHHHH-cC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHH
Confidence 33334556888999998887 55 46667665442 2221 3899998766654443
No 111
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=22.76 E-value=83 Score=26.74 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=37.2
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCee--eEEEEcCCCCcHHHHhhh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVANK 301 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~K--KAyV~LapDyDALDVANK 301 (305)
++...+..+|++.+.. || .|..|..+...+|.- -+||.+....+|......
T Consensus 104 l~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 104 LSPVVSNELLEQAFSQ-FG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4456789999998865 67 788888877766643 489999877776555444
No 112
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=22.66 E-value=1.3e+02 Score=22.56 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=35.5
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCC-CCe--eeEEEEcCCCCcHHHHh
Q psy6374 246 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 246 VFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrp-dG~--KKAyV~LapDyDALDVA 299 (305)
|--+....+..+|++.+.. || .|..|..+..+ .|. --+||++....+|....
T Consensus 7 v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 61 (167)
T 1fxl_A 7 VNYLPQNMTQEEFRSLFGS-IG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61 (167)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHH
Confidence 3335667899999988876 56 57788777655 332 34899998766655443
No 113
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.59 E-value=98 Score=21.89 Aligned_cols=36 Identities=3% Similarity=0.069 Sum_probs=31.0
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+++.+.....+.
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 357889999999999999999999999988877654
No 114
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.50 E-value=1.3e+02 Score=22.61 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=30.2
Q ss_pred CeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 243 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 243 NtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
+++.|.|+...+=.++|+.|+..++|.+.....+.
T Consensus 27 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 27 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp CEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 35788999999999999999999999988877654
No 115
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=22.36 E-value=80 Score=25.04 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=34.6
Q ss_pred EEEEEe--e-CCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHH
Q psy6374 245 LVFIVH--L-QANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDV 298 (305)
Q Consensus 245 lVFiVD--v-kANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDV 298 (305)
-+|+-+ . ..+..+|++.+.. ||. |..|..+....|+ +||.+....+|...
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~-~G~-i~~v~i~~~~~g~--afV~f~~~~~a~~A 57 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLA 57 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHT-TCC-CSEEECSTTCSSC--CEEECTTTHHHHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHh-cCC-EEEEEEEeCCCCE--EEEEECCHHHHHHH
Confidence 345544 4 6799999988876 554 7777776655564 99999877665543
No 116
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.18 E-value=1.1e+02 Score=21.03 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=30.9
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.+.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 17 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 17 GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 357888999999999999999999999988777654
No 117
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=22.06 E-value=1.3e+02 Score=20.51 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=35.0
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHhh
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVAN 300 (305)
||--++...+..+|++.+.. || .|..|..+..+. |. --+||++....+|.....
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKD-FP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTT-ST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 34445567888899888765 55 577777665532 32 248999987766655443
No 118
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=21.96 E-value=1.2e+02 Score=21.04 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=31.7
Q ss_pred EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCe--eeEEEEcCCCCcHHHHh
Q psy6374 249 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 249 VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~--KKAyV~LapDyDALDVA 299 (305)
+....+..+|++.+.. || .|..|..+.. .|. --+||++....+|....
T Consensus 16 lp~~~t~~~l~~~f~~-~G-~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~ 65 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNE-CG-HVLYADIKME-NGKSKGCGVVKFESPEVAERAC 65 (92)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEES-SSCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEEcc-CCCcceEEEEEECCHHHHHHHH
Confidence 4557889999998887 44 4666665542 332 24899998766655443
No 119
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=21.93 E-value=1.2e+02 Score=20.73 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCeEEEEEeeCCCHHHHHHHHHHHhCCceeeEEeee
Q psy6374 242 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277 (305)
Q Consensus 242 nNtlVFiVDvkANK~QIKqAVKKLYdVkVaKVNTLI 277 (305)
..++.|.|+...+=.++|+.|+..+|+.+.....+.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 347888899999999999999999999988877654
No 120
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=21.79 E-value=91 Score=22.69 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=34.0
Q ss_pred eEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHh
Q psy6374 244 TLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVA 299 (305)
Q Consensus 244 tlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVA 299 (305)
+-+|+- ....+..+|++.+.. || .|..|..+..+. |. -=+||++....+|....
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai 85 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCD-YG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 85 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGG-GS-CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 444554 456889999988876 45 466676654432 21 24999998776655443
No 121
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.69 E-value=90 Score=23.36 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=32.5
Q ss_pred eEEEE--EeeCCCHHHHHHHHHHHhCCceeeEEeeeCCCCeeeEEEEcCCCCcHHHH
Q psy6374 244 TLVFI--VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDV 298 (305)
Q Consensus 244 tlVFi--VDvkANK~QIKqAVKKLYdVkVaKVNTLIrpdG~KKAyV~LapDyDALDV 298 (305)
+-+|+ +....+..+|++.|.. || .|..|..+ +..|+ |||.+....+|...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~-~~~g~--afV~f~~~~~A~~A 62 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSR-FG-SLGRVLLP-EGGIT--AIVEFLEPLEARKA 62 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECC-SSSSC--EEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEe-CCCCE--EEEEeCCHHHHHHH
Confidence 34454 4567889999998886 66 45555533 33454 99999876665443
No 122
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=21.36 E-value=56 Score=23.91 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHhCCceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHH
Q psy6374 252 QANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 252 kANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~K--KAyV~LapDyDALDV 298 (305)
..+..+|++.+.. || .|..|..+..+. |.- =+||++....+|...
T Consensus 23 ~~~~~~L~~~F~~-~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~A 70 (100)
T 3ns6_A 23 PVLKKALTSLFSK-AG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKI 70 (100)
T ss_dssp HHHHHHHHHHHHT-TS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHh-cC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 3456677777765 56 677888776554 322 389999876655443
No 123
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.33 E-value=51 Score=24.80 Aligned_cols=28 Identities=0% Similarity=0.096 Sum_probs=22.0
Q ss_pred hcCCeE--EEEEeeCCCHHHHHHHHHHHhC
Q psy6374 240 EDNNTL--VFIVHLQANKHHIKAAVKKMYD 267 (305)
Q Consensus 240 EdnNtl--VFiVDvkANK~QIKqAVKKLYd 267 (305)
++.|.| +||++++.+-.|++..|+++-+
T Consensus 41 d~~r~YE~m~Il~P~l~ee~~~~~vek~~~ 70 (77)
T 3zzp_A 41 TTPGRYEVNIVLNPNLDQSQLQNEKEIIQR 70 (77)
T ss_dssp SSTTEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 334444 8999999999999999988643
No 124
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=21.04 E-value=56 Score=24.38 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=38.9
Q ss_pred CeE-EEEEeeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHHh
Q psy6374 243 NTL-VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVA 299 (305)
Q Consensus 243 Ntl-VFiVDvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~K--KAyV~LapDyDALDVA 299 (305)
||| |--++...+..+|++.++.+=.+.|..|..+..+. |.- =+||++....+|....
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHH
Confidence 443 34466779999999999875456888887765432 211 3999999877765544
No 125
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=20.46 E-value=1.5e+02 Score=22.73 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=26.4
Q ss_pred EEEEEeeCCCHHHHHHHHHHH------hCCceeeEEeee
Q psy6374 245 LVFIVHLQANKHHIKAAVKKM------YDINVAKVNTLI 277 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKL------YdVkVaKVNTLI 277 (305)
++||++++.+..|++..++.+ .|-.|.+|..+=
T Consensus 6 ~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG 44 (101)
T 1cqm_A 6 VNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILG 44 (101)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 789999999999999888876 466677776543
No 126
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=20.31 E-value=1.4e+02 Score=22.66 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=36.8
Q ss_pred EEEEEeeCCCHHHHHHHHHHH---hCC------ceeeEEeeeCCCCeeeEEEEcCCCCcHHHH
Q psy6374 245 LVFIVHLQANKHHIKAAVKKM---YDI------NVAKVNTLIRPDGKKKAYVRLARDYDALDV 298 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKL---YdV------kVaKVNTLIrpdG~KKAyV~LapDyDALDV 298 (305)
||--+....+..+|++.+..+ +|+ .|..+++. +..|+ +||.+....+|...
T Consensus 8 ~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~--afV~f~~~~~A~~A 67 (172)
T 2g4b_A 8 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNF--AFLEFRSVDETTQA 67 (172)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTE--EEEEESSHHHHHHH
T ss_pred EEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCE--EEEEeCCHHHHHHH
Confidence 444467789999999999986 264 67777764 44565 99999877665543
No 127
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=20.12 E-value=1.3e+02 Score=23.44 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=37.6
Q ss_pred CeEEEEE--eeCCCHHHHHHHHHHHhCCceeeEEeeeCCC-Ce--eeEEEEcCCCCcHHHHhh
Q psy6374 243 NTLVFIV--HLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 300 (305)
Q Consensus 243 NtlVFiV--DvkANK~QIKqAVKKLYdVkVaKVNTLIrpd-G~--KKAyV~LapDyDALDVAN 300 (305)
++-+||- ....+..+|++.|.. || .|..|.++..+. |. --+||++....+|.....
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSK-SG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4455665 456899999998876 45 377887776554 22 258999987766655443
No 128
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=20.10 E-value=1.7e+02 Score=23.48 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=37.3
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCC-ceeeEEeeeCCC-Cee--eEEEEcCCCCcHHHH
Q psy6374 245 LVFIVHLQANKHHIKAAVKKMYDI-NVAKVNTLIRPD-GKK--KAYVRLARDYDALDV 298 (305)
Q Consensus 245 lVFiVDvkANK~QIKqAVKKLYdV-kVaKVNTLIrpd-G~K--KAyV~LapDyDALDV 298 (305)
||--+....+..+|++.|.. ||+ .|..|..+..+. |.- =+||.+....+|...
T Consensus 59 fVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~A 115 (156)
T 3n9u_C 59 YVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKL 115 (156)
T ss_dssp EEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 33344557999999999976 675 899999876643 322 399999876665443
No 129
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=20.01 E-value=1.2e+02 Score=25.72 Aligned_cols=51 Identities=10% Similarity=0.236 Sum_probs=33.8
Q ss_pred EEEE--eeC-CCHHHHHHHHHHHhCCceeeEEeeeCCC--Ceee--EEEEcCCCCcHHHH
Q psy6374 246 VFIV--HLQ-ANKHHIKAAVKKMYDINVAKVNTLIRPD--GKKK--AYVRLARDYDALDV 298 (305)
Q Consensus 246 VFiV--Dvk-ANK~QIKqAVKKLYdVkVaKVNTLIrpd--G~KK--AyV~LapDyDALDV 298 (305)
+|+- +.. .+..+|++.+.. || .|..|..+..++ |.-+ +||++....+|...
T Consensus 213 l~v~nlp~~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 213 IMIRNLSTELLDENLLRESFEG-FG-SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp EEEEEECTTTCCHHHHHHHHGG-GS-CEEEEECCSCCC---CCCEEEEEEESSHHHHHHH
T ss_pred EEEECCCcccCCHHHHHHHHhc-cC-CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH
Confidence 4444 445 889999999887 55 566777665544 4333 99999876665543
Done!