RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6374
(305 letters)
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 145 bits (368), Expect = 2e-43
Identities = 88/142 (61%), Positives = 102/142 (71%)
Query: 164 QGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAF 223
+ KK K K K G + RK+RTSVRF RP+T R PKY RR P ++D +
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKY 63
Query: 224 NIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK 283
+IIKYPLTTE AMKKIEDNNTLVFIV +ANK IK AV+K+YD+ V KVNTLI PDG K
Sbjct: 64 SIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK 123
Query: 284 KAYVRLARDYDALDVANKIGII 305
KAY+RL+ D DALDVANKIGII
Sbjct: 124 KAYIRLSPDVDALDVANKIGII 145
>gnl|CDD|237750 PRK14548, PRK14548, 50S ribosomal protein L23P; Provisional.
Length = 84
Score = 107 bits (269), Expect = 2e-29
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 281
++IIKYPL TE AM IE N L FIV +A K IK AV++++D+ V KVNTLI P G
Sbjct: 1 PYSIIKYPLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG 60
Query: 282 KKKAYVRLARDYDALDVANKIGII 305
+KKAYV+LA +YDA ++A+++G+
Sbjct: 61 EKKAYVKLAEEYDAEEIASRLGVF 84
>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23. This model
describes the archaeal ribosomal protein L23P and
rigorously excludes the bacterial counterpart L23. In
order to capture every known instance of archaeal L23P,
the trusted cutoff is set lower than a few of the
highest scoring eukaryotic cytosolic ribosomal
counterparts [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 77
Score = 95.4 bits (238), Expect = 4e-25
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 229 PLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVR 288
PL TE AM IE N L FIV +A K IK AV+K++D+ V KVNTLI P G+KKAYV+
Sbjct: 1 PLVTEKAMNLIEKENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVK 60
Query: 289 LARDYDALDVANKIGII 305
LA +Y A ++A+++G+
Sbjct: 61 LAEEYAAEEIASRLGVF 77
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal
structure and biogenesis].
Length = 94
Score = 78.8 bits (195), Expect = 1e-18
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 281
+++IK P+ TE AM +E N VFIV A K IKAAV++++ + V KVNTL
Sbjct: 1 LYDVIKSPVVTEKAMLLMEKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60
Query: 282 KKKAYVR---LARDYDALDVANKIGI 304
K+A V+ L +DY V K G
Sbjct: 61 TKRAGVKRIGLRKDYKKAYVTLKEGQ 86
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed.
Length = 92
Score = 64.3 bits (158), Expect = 2e-13
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 223 FNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP--- 279
+++IK P+ TE + +E N VF V A K IKAAV+K++ + V VNTL
Sbjct: 1 YDVIKRPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60
Query: 280 ----------DGKKKAYVRLA 290
KKA V LA
Sbjct: 61 KRFGRRIGKRSDWKKAIVTLA 81
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 68.1 bits (166), Expect = 1e-12
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 7/145 (4%)
Query: 9 ATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAA--AGQASGSAGDKPAAAKKDAKKAPEK 66
+ R+++ + E+KP + + ++ A +A + + A EK
Sbjct: 910 SARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEK 969
Query: 67 KAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK-PAQKGVLKKAGAKSTPGV 125
A +K + KK A +AA KK KKA KKA A K A+K KK AK P
Sbjct: 970 VAEAVRKTVRRSVKKAAATRAAMKKKVA-KKAPAKKAAAKKAAAKKAAAKKKVAKKAPA- 1027
Query: 126 KKNVPKKALPVKKGALKPKKGVPAK 150
K V +K KK A KP + +
Sbjct: 1028 -KKVARKPAA-KKAAKKPARKAAGR 1050
Score = 55.8 bits (134), Expect = 1e-08
Identities = 41/102 (40%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
++ A EK E +K +A + A KK AKKAP KKAA K AA
Sbjct: 957 QQAATAVASGIEKVAEAVRKTVRR-SVKKAAATRAAMKKKVAKKAPAKKAAAKK----AA 1011
Query: 79 AKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAK 120
AKK A KK A K P K A +K A K A+K K AG K
Sbjct: 1012 AKKAAAKKKVAKKAPAKKVA--RKPAAKKAAKKPARKAAGRK 1051
Score = 52.3 bits (125), Expect = 1e-07
Identities = 35/84 (41%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 26 KKTTEKKPEEKKKPAAAGQASGSAG-DKPAAAKK------DAKKAPEKKAAGDKKPAAAA 78
+ K K AAA +A+ K A AKK AKKA KK K PA
Sbjct: 971 AEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKV 1030
Query: 79 AKKPADKKAAAAKKPTDKKAGDKK 102
A+KPA KK AAKKP K AG K
Sbjct: 1031 ARKPAAKK--AAKKPARKAAGRKA 1052
Score = 41.1 bits (96), Expect = 6e-04
Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 21 KKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAK 80
KK KK KK KK A A K A AKK A+K KKAA KKPA AA
Sbjct: 993 KKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKK-APAKKVARKPAAKKAA--KKPARKAAG 1049
Query: 81 KPA 83
+ A
Sbjct: 1050 RKA 1052
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23.
Length = 90
Score = 60.0 bits (146), Expect = 9e-12
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 224 NIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK- 282
++IKYP+ TE AM +E N VFIV +ANK IK AV+ ++ + V KVNTLI P
Sbjct: 1 DVIKYPIITEKAMNLLEKPNQYVFIVDKKANKTEIKDAVEHIFGVKVEKVNTLILPGKVK 60
Query: 283 ------------KKAYVRLARDYDALDVANK 301
KKA V L D L A++
Sbjct: 61 RNGQYLGRKKSYKKAIVTLEEG-DILPFASR 90
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 51.8 bits (124), Expect = 1e-07
Identities = 49/130 (37%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Query: 24 AEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPA 83
A K K P K A + SA K + K KKAA AA AKK A
Sbjct: 197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTA 256
Query: 84 D---KKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGA 140
KKAA A K KKA AKAAK A K KA AK G K KA K
Sbjct: 257 KKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAP 316
Query: 141 LKPKKGVPAK 150
+ KG AK
Sbjct: 317 KRGAKGKKAK 326
Score = 51.0 bits (122), Expect = 3e-07
Identities = 53/143 (37%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 45 ASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAK 104
A G+A K AA AK +K +A K A +KK A K A +AKK K K AK
Sbjct: 193 AVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAA--KTAAKAAK 250
Query: 105 AAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQ 164
AK K LKKA AK+ K K A KGA K KG +K GKK ++
Sbjct: 251 KAKKTAKKALKKA-AKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKA 309
Query: 165 GQVKKALKSKLKVLKGGHHTRTR 187
KA K K K T+ R
Sbjct: 310 KATAKAPKRGAKGKKAKKVTKKR 332
Score = 47.6 bits (113), Expect = 3e-06
Identities = 42/129 (32%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Query: 38 KPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKK 97
K AA A+ S K +A K A K KK A +A A K A K A AKK K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKA 259
Query: 98 AGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKK 157
K A+K KA AK+ G K KA KK K G AK K
Sbjct: 260 LKKAAKAVKKAAKKA--AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPK 317
Query: 158 PLGKNEQGQ 166
K ++ +
Sbjct: 318 RGAKGKKAK 326
Score = 43.0 bits (101), Expect = 9e-05
Identities = 40/114 (35%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK + K + K KKK A ++ A A A K AKK +K K
Sbjct: 210 SGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKK 269
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPK 131
AAKK A A AAK KA KAKA K A K + AK+T K K
Sbjct: 270 AAKKAAKAAAKAAKGA--AKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAK 321
Score = 42.2 bits (99), Expect = 2e-04
Identities = 40/121 (33%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 59 DAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAG 118
A A K A A + AKK + K +AAKK + KK K A +AK A K K A
Sbjct: 192 AAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVS-KKKAAKTAVSAKKAAKTAAKAAK 250
Query: 119 AKSTPGVKKNVPKKALPVKKGALKPKKG---VPAKLQKGGKKPLGKNEQGQVKKALKSKL 175
KK + K A VKK A K K K K ++ K A SK
Sbjct: 251 KAKKTA-KKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKA 309
Query: 176 K 176
K
Sbjct: 310 K 310
Score = 41.4 bits (97), Expect = 3e-04
Identities = 38/109 (34%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK ++KK + KK A +A+ A A K A KA +K A K AA
Sbjct: 221 SAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAK 280
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVK 126
AAK A KA K KKAG K A +K K GAK K
Sbjct: 281 AAKGAA--KATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKK 327
Score = 36.4 bits (84), Expect = 0.013
Identities = 34/141 (24%), Positives = 44/141 (31%), Gaps = 4/141 (2%)
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPV 136
AA K A K AA A K A +K AK K K A
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKA---AKTAAKAAKKA 252
Query: 137 KKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFH 196
KK A K K ++K KK K K A K+ K + S
Sbjct: 253 KKTAKKALKKAAKAVKKAAKKA-AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKA 311
Query: 197 RPRTQRGGAAPKYMRRSVPRR 217
+ + GA K ++ +R
Sbjct: 312 TAKAPKRGAKGKKAKKVTKKR 332
Score = 33.7 bits (77), Expect = 0.11
Identities = 38/119 (31%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 8 RATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKK 67
+ S K KK A K K K AA +A +A A K KKA +K
Sbjct: 215 ASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKA 274
Query: 68 AAGDKKPA---------AAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKA 117
A K A A AKK A KKAAA K K+ K A+K K+A
Sbjct: 275 AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKRA 333
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 51.0 bits (123), Expect = 4e-07
Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 29 TEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAA 88
+ P P AA A+ +A PAAA AK A A AA KPA AA
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPA-AKAPAAPAPAPPAAAAPAAPPKPAAAAAA 92
Query: 89 AAKKPTDKKAGDKKAKAAKPAQKG--VLKKAGAKSTPGVKKN------VPK----KALPV 136
AA A A AA + L+ A A V KN VP +A+P
Sbjct: 93 AAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA----VAKNMDASLEVPTATSVRAVPA 148
Query: 137 K 137
K
Sbjct: 149 K 149
Score = 47.2 bits (113), Expect = 7e-06
Identities = 31/112 (27%), Positives = 33/112 (29%), Gaps = 16/112 (14%)
Query: 42 AGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDK 101
A GS AAA A A AA K AA A P A AA A
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 102 KAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQK 153
A AA PA A A V P +G A + K
Sbjct: 94 AAPAAPPAAAAAAAPAAAAVEDEVT----------------PLRGAAAAVAK 129
Score = 42.6 bits (101), Expect = 2e-04
Identities = 21/75 (28%), Positives = 23/75 (30%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKP 82
A AA + A PAAA A P AA PAA A
Sbjct: 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104
Query: 83 ADKKAAAAKKPTDKK 97
A AAAA +
Sbjct: 105 AAAPAAAAVEDEVTP 119
Score = 38.3 bits (90), Expect = 0.004
Identities = 25/87 (28%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
A PAAA A A PA A AP K AA AAAA
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA--AAAAAAAP 96
Query: 80 KKPADKKAAAAKKPTDKKAGDKKAKAA 106
P AAAA + + A
Sbjct: 97 AAPPAAAAAAAPAAAAVEDEVTPLRGA 123
>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23.
Length = 93
Score = 46.4 bits (111), Expect = 7e-07
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 223 FNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK 282
+ IKYP+ T+ +++ +E N F V + K IK ++ + + V VN+ R K
Sbjct: 1 MDGIKYPVFTDKSIRLLE-KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH-RLPRK 58
Query: 283 KK 284
K+
Sbjct: 59 KR 60
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal
domain. The N-terminal domain appears to be specific to
the eukaryotic ribosomal proteins L25, L23, and L23a.
Length = 52
Score = 43.8 bits (104), Expect = 2e-06
Identities = 29/52 (55%), Positives = 34/52 (65%)
Query: 166 QVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRR 217
KALK+K VLKG H + RKIRTSV F RP+T + PKY R+SVP R
Sbjct: 1 PKAKALKAKKAVLKGVHGKKKRKIRTSVTFRRPKTLKLPRNPKYPRKSVPHR 52
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 47.4 bits (112), Expect = 6e-06
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 18 KKEKKPAEKKTTE--KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPA 75
KK+ + A+KK KK EE KK A A +A A A A ++ +A EKK KK A
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
Query: 76 AAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALP 135
AA KK +KK A K KKA + K KA + + KK ++ K KKA
Sbjct: 1381 DAAKKKAEEKKKADEAK---KKAEEDKKKADELKKAAAAKKKADEAKK--KAEEKKKADE 1435
Query: 136 VKKGALKPKKGVPAK 150
KK A + KK AK
Sbjct: 1436 AKKKAEEAKKADEAK 1450
Score = 46.7 bits (110), Expect = 1e-05
Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
+KK+ A+K +KK +E KK A + + A K AKK A A KK A + K AA
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKAEEAKKAA 1345
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKK-----AKAAKPAQKGVLKKAGAKSTPGVKKNVPK 131
AAK A+ A A+ +K +K K A A+K +K A + K
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
Query: 132 KALPVKKGALKPKKGVPAK 150
KA +KK A KK AK
Sbjct: 1406 KADELKKAAAAKKKADEAK 1424
Score = 45.5 bits (107), Expect = 3e-05
Identities = 61/165 (36%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 17 DKKEKKPAEKKTTE-KKPEEKKKPAAAGQASGSAGDKPAAAKKDA----KKAPEKKAAGD 71
KK+ A+KK E KK +E KK A + K AAAKK A KKA EKK A +
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 72 KKPAAAAAKKP--ADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNV 129
K A AKK A KKA AKK + K ++AK A A+K + A +
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
Query: 130 PKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSK 174
KKA KK A KK AK + KK + + KKA ++K
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
Score = 44.0 bits (103), Expect = 7e-05
Identities = 56/150 (37%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 17 DKKEKKPAEKKTTE---KKPEEKKKPAAAGQASGSAGDKPAAAKK--DAKKAPEKKAAGD 71
D+ +KK E K + KK EE KK A A + K A A K A E +AA +
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Query: 72 KKPAAAAAKKPADKKAAAAKKPTD--KKAGDKKAKAAKPAQKG--VLKKAGAKSTPGVKK 127
K AA K+ A KKA AAKK + KKA + K KA + +K + K A AK K
Sbjct: 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
Query: 128 NVPKKALPVKKGALKPKKGVPAKLQKGGKK 157
KKA KK KK AK KK
Sbjct: 1425 ---KKAEEKKKADEAKKKAEEAKKADEAKK 1451
Score = 42.8 bits (100), Expect = 2e-04
Identities = 56/164 (34%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
D+ +K +KK E K E+KK A + K AKK A++A +KKA KK A
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA-KKKADAAKKKAE 1339
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGA--KSTPGVKK--NVPKK 132
A K KA A + +A ++KA+AA+ ++ KKA A K KK KK
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Query: 133 ALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLK 176
A KK A + KK AK K K + + KKA ++K K
Sbjct: 1400 AEEDKKKADELKKAAAAK----KKADEAKKKAEEKKKADEAKKK 1439
Score = 40.9 bits (95), Expect = 8e-04
Identities = 59/157 (37%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 24 AEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAK-KDAKKAPE-KKAAGDKKPAAAAAKK 81
A K KK EEKKK A +A A K ++AKKA E KK A + K A AAKK
Sbjct: 1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
Query: 82 PAD--KKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKG 139
A+ KKAA A K + A D+ A + A+ KK AK KKA KK
Sbjct: 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK----------KKADAAKKK 1386
Query: 140 ALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLK 176
A + KK AK K K + ++KKA +K K
Sbjct: 1387 AEEKKKADEAK----KKAEEDKKKADELKKAAAAKKK 1419
Score = 39.7 bits (92), Expect = 0.002
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 7/167 (4%)
Query: 17 DKKEKKPAEKKTTE-KKPEEKKKPAAAGQASGSAGDKPAAAKKDA----KKAPEKKAAGD 71
+ K+ + A+KK E KK +E KK A + + A K AKK A K A KK A +
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Query: 72 KKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPK 131
K A A K KKA AKK + K ++K KA + + LKKA K K +
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
Query: 132 KALPVKKGALKPKKGVPAKLQKGGK--KPLGKNEQGQVKKALKSKLK 176
+ A + KK A++++ K + K + + KKA ++K+K
Sbjct: 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
Score = 39.7 bits (92), Expect = 0.002
Identities = 41/128 (32%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
+ K+ A+KK E K E+ K A K A K A +A +K KK
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPV 136
A A KKA AKK + K D+ KA + + KKA K K + KKA +
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK----KADELKKAEEL 1557
Query: 137 KKGALKPK 144
KK K K
Sbjct: 1558 KKAEEKKK 1565
Score = 39.7 bits (92), Expect = 0.002
Identities = 53/147 (36%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 13 NSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGD-KPAAAKKDA----KKAPEKK 67
++ K E+ + + + E A A + A + K AKK A KKA EKK
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Query: 68 AAGDKKPAAAAAKKPAD--KKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGV 125
A + K A KK AD KKAAAAKK D+ KKA+ K A + K AK
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKAEEAKKADEA 1449
Query: 126 KKNV--PKKALPVKKGALKPKKGVPAK 150
KK KKA KK A + KK AK
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAK 1476
Score = 38.2 bits (88), Expect = 0.006
Identities = 55/160 (34%), Positives = 67/160 (41%), Gaps = 14/160 (8%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDA----KKAPEKKAAGDK 72
DKK+ +K KK ++ K A + K A K A KKA E K A +
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
Query: 73 KPAAAAAKKP--ADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVP 130
K A AKK A KKA AKK + K KKA+ AK K A AK KK
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAK---KKAEEAKKKADEAKKAAEAK-----KKADE 1514
Query: 131 KKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKA 170
K K A + KK AK KK K + ++KKA
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
Score = 37.8 bits (87), Expect = 0.007
Identities = 49/157 (31%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK+ + A+K E+ EE +K A A A + A ++A+KA E K A +KK A
Sbjct: 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAH-FARRQAAIKAEEARKADELKKAEEKKKADE 1294
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
A K KKA AKK ++ KKA AK + KKA A + K A K
Sbjct: 1295 AKKAEEKKKADEAKKKAEEA---KKADEAKKKAEEAKKKADAAKKKAEEAK--KAAEAAK 1349
Query: 138 KGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSK 174
A A +K K E + A K K
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 37.4 bits (86), Expect = 0.010
Identities = 60/164 (36%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 17 DKKEKKPAEKKTTE--KKPEEKKKPAAAGQASGSAGDKPAAAKKD---AKKAPEKKAAGD 71
+KK+ A+KK E KK +E KK AAA + + A K KK KKA E K A +
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Query: 72 KKPAAAAAKKPAD-KKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVP 130
K A AKK + KK A K D+ KKA+ AK A + K AK K +
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADE--AKKKAEEAKKADEAKKKAEEAKK----KADEA 1502
Query: 131 KKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSK 174
KKA KK A + KK AK KK + + KKA + K
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
Score = 34.3 bits (78), Expect = 0.082
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 18 KKEKKPAEKKTTE--KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPA 75
KK+ + A+KK E K E KKK A +A + A ++AKKA E K A +KK A
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
Query: 76 AAAAKKPADKKAAAAKKPTDKKAGD-------KKAKAAKPAQKGVLKKAGAKSTPGVKKN 128
K KKA KK + K + +KA+ AK A++ +++ K KK
Sbjct: 1549 DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV-MKLYEEEKKM 1607
Query: 129 VPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKA 170
++A ++ +K ++ A+ +K + L K E + KKA
Sbjct: 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Score = 34.0 bits (77), Expect = 0.12
Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
K+ + A+K E K E+++ + A A ++ A KA E + A + K A
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
Query: 79 AKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKK 138
KKA AKK +KK D+ K A+ A+K K A+ KKA KK
Sbjct: 1290 ------KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Query: 139 GALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLK 179
A K A + + K+ K K K
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Score = 30.9 bits (69), Expect = 1.2
Identities = 30/101 (29%), Positives = 46/101 (45%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
+ + A+K T K E +K A +A + + A +DA+KA E + A D K
Sbjct: 1096 AFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVE 1155
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKA 117
A K +KA A+K D K + KA + + L+KA
Sbjct: 1156 IARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKA 1196
Score = 30.1 bits (67), Expect = 1.8
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK ++ K KK EE+KK + + K A K A++ + KAA + K A
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
KK + K A + +A K+A+ AK A++ LKK A+ KKA +K
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE--LKKKEAEEK--------KKAEELK 1722
Query: 138 KGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIR 190
K A + K + +K ++ K E+ + + K K+ LK + +IR
Sbjct: 1723 K-AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
Score = 28.6 bits (63), Expect = 5.2
Identities = 28/112 (25%), Positives = 44/112 (39%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K + ++ KK EE KK A + K K + +K+A DKK A
Sbjct: 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNV 129
A K +KK A K ++K ++ K + + L + K V K +
Sbjct: 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
Score = 28.6 bits (63), Expect = 5.5
Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 5/162 (3%)
Query: 31 KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAA 90
+K E+ KK A +A + D A K + ++ E+ ++ A A++ A KA A
Sbjct: 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277
Query: 91 KKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAK 150
+K + K ++K KA + + KKA + KKA KK A + KK A
Sbjct: 1278 RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA---KKADEAKKKAEEAKKKADAA 1334
Query: 151 LQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIRTS 192
+K + K + +A + + + +
Sbjct: 1335 KKKAEEAK--KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Score = 27.8 bits (61), Expect = 8.7
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK+ + A K +K E+ +K A +A + + A +DA+KA E + A D K A A
Sbjct: 1121 KKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA 1180
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
A K +KA +K D +KA+AA+ A++ + K+ K KKA K
Sbjct: 1181 ARKAEEVRKAEELRKAEDA----RKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK 1236
Query: 138 KGALKPKK 145
K A + KK
Sbjct: 1237 KDAEEAKK 1244
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 46.9 bits (112), Expect = 7e-06
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 10/127 (7%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK KK A K ++ +++ A + + + + K A
Sbjct: 18 KKLKKLAAKSKSKGFITKEEIKEAL--------ESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
KK A K KA KK + K + K + V
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDEL--DSSKKAEKKNALDKDDDLNYVKDIDVL 127
Query: 138 KGALKPK 144
A
Sbjct: 128 NQADDDD 134
Score = 45.4 bits (108), Expect = 2e-05
Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEK-KAAGDKKPA 75
+++ KK +K + K + +A S P + K D +
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATES 72
Query: 76 AAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKA 133
KK AAA K KK + ++K A+K +V +A
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQA 130
Score = 44.2 bits (105), Expect = 5e-05
Identities = 24/121 (19%), Positives = 34/121 (28%), Gaps = 1/121 (0%)
Query: 24 AEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPA 83
E EE+ K + + + K K++ K+A E K ++
Sbjct: 3 TASTKAELAAEEEAKKKLK-KLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 84 DKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKP 143
K +D K A A K KK KK K AL
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Query: 144 K 144
K
Sbjct: 122 K 122
Score = 43.1 bits (102), Expect = 1e-04
Identities = 19/103 (18%), Positives = 25/103 (24%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K+E K A + + + + D + K KAA K PA
Sbjct: 35 KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAK 120
K D A KK K D
Sbjct: 95 KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDD 137
Score = 39.6 bits (93), Expect = 0.002
Identities = 18/121 (14%), Positives = 33/121 (27%)
Query: 60 AKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGA 119
A K ++ A KK A K + ++ ++K P Q + +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
Query: 120 KSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLK 179
K A +K K L +++ + K AL +
Sbjct: 61 GMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Query: 180 G 180
Sbjct: 121 V 121
Score = 39.2 bits (92), Expect = 0.002
Identities = 18/102 (17%), Positives = 26/102 (25%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK + ++ K A K AA AK +KK + +
Sbjct: 46 KKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKK 105
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGA 119
A KK A K D ++ L
Sbjct: 106 AEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDI 147
Score = 36.5 bits (85), Expect = 0.015
Identities = 16/99 (16%), Positives = 26/99 (26%)
Query: 8 RATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKK 67
A ++ + + K + + + K AAAK AKK + +
Sbjct: 40 EALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Query: 68 AAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAA 106
KK A D +A D
Sbjct: 100 LDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDD 138
Score = 35.0 bits (81), Expect = 0.047
Identities = 17/122 (13%), Positives = 25/122 (20%), Gaps = 4/122 (3%)
Query: 55 AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVL 114
AKK KK K + + ++ + + K
Sbjct: 15 EAKKKLKKLAAKSKSKGFITKEEIKE---ALESKKKTPEQIDQVLIFLSGMVKDTDDATE 71
Query: 115 KKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSK 174
K T K KA P KK +K + L
Sbjct: 72 SDIPKKKTKTAAKAAAAKA-PAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQA 130
Query: 175 LK 176
Sbjct: 131 DD 132
Score = 29.6 bits (67), Expect = 2.5
Identities = 10/93 (10%), Positives = 19/93 (20%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
K KK + + + KK +A + D
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLD 143
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPA 109
D + D D+ + +
Sbjct: 144 DDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176
Score = 28.8 bits (65), Expect = 4.6
Identities = 17/96 (17%), Positives = 21/96 (21%), Gaps = 11/96 (11%)
Query: 9 ATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKA 68
S KK+ K A K K P +KK ++KK KK K
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDEL-----------DSSKKAEKKNALDKD 115
Query: 69 AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAK 104
AD
Sbjct: 116 DDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDD 151
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 43.3 bits (102), Expect = 1e-04
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDA---KKAPEKKAAGDKK 73
D + K + +KPAAA + A PAAAKK ++ +K K
Sbjct: 1316 DDDDFAVEVSLAERLKKKGGRKPAAANKK---AAKPPAAAKKRGPATVQSGQKLLTEMLK 1372
Query: 74 PAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQK-GVLKKAGAKSTPGVKKNVPKK 132
PA A P K P +KK+G +AA + +G+ S+ + +V K
Sbjct: 1373 PAEAIGISPEKKVRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAK 1432
Query: 133 ALPVK 137
P +
Sbjct: 1433 PRPQR 1437
Score = 38.3 bits (89), Expect = 0.005
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 2/141 (1%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
+ KKPA KKTT+K E + G +S + A K +A KK A
Sbjct: 1200 QAPKKPAPKKTTKKASESETTEETYG-SSAMETENVAEVVKPKGRAGAKKKAPAAAKEKE 1258
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
+ D K A D A + AK + + ++A A+ P +V +
Sbjct: 1259 EEDEILDLKDRLAAYNLD-SAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDD 1317
Query: 138 KGALKPKKGVPAKLQKGGKKP 158
+KGG+KP
Sbjct: 1318 DDFAVEVSLAERLKKKGGRKP 1338
Score = 35.6 bits (82), Expect = 0.033
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK A++K E + + K AA SA + A ++ K P ++AA KKP A+
Sbjct: 1248 KKAPAAAKEKEEEDEILDLKDRLAAYNL-DSAPAQSAKMEETVKAVPARRAAARKKPLAS 1306
Query: 78 AAKKPADKK-------AAAAKKPTDKKAGDKKAKAAKPAQK--GVLKKAGAKSTPGVKKN 128
+ + + KK G K A A K A K KK G + +K
Sbjct: 1307 VSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKL 1366
Query: 129 VPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSK 174
+ + P + + P+K K++K P K + +A +K
Sbjct: 1367 LTEMLKPAEAIGISPEK----KVRKMRASPFNKKSGSVLGRAATNK 1408
Score = 30.2 bits (68), Expect = 1.6
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 57 KKDAKKAPEKKA---AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGV 113
K+DAK ++ A + + AA K A K T KKA + + +
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAM 1229
Query: 114 LKKAGAKSTPGVKKNVPKKALPVKK 138
+ A+ + KK P
Sbjct: 1230 ETENVAEVVKPKGRAGAKKKAPAAA 1254
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 42.1 bits (99), Expect = 2e-04
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 12/127 (9%)
Query: 29 TEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAA---GDKKPAAAAAKKPADK 85
T K+ + + P A +A P+ A + E AA P AAA A +
Sbjct: 219 TVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPE 278
Query: 86 KAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKK 145
+ + A + AKAA A K L K A P LK
Sbjct: 279 AQPVSGTAAAEPAPKEAAKAAAAAAKPAL---------EDKPRPLGIARPGGADDLKLIS 329
Query: 146 GVPAKLQ 152
GV K++
Sbjct: 330 GVGPKIE 336
Score = 36.7 bits (85), Expect = 0.012
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 2/108 (1%)
Query: 14 SLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQAS--GSAGDKPAAAKKDAKKAPEKKAAGD 71
+GD ++ + + P +A+ SA + AA K AP+ A
Sbjct: 215 DIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNA 274
Query: 72 KKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGA 119
K P A A + A + A K A KP G+ + GA
Sbjct: 275 KAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGA 322
Score = 34.0 bits (78), Expect = 0.074
Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKP 82
P + P E +P +A A +A K A A K AAA+
Sbjct: 233 PWQGDAAPVPPSEAARPKSA-DAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPA 291
Query: 83 ADKKAAAAKKPTDKKAGDKK--AKAAKPAQKGVLKK 116
+ A AA DK A+P LK
Sbjct: 292 PKEAAKAAAAAAKPALEDKPRPLGIARPGGADDLKL 327
Score = 29.4 bits (66), Expect = 2.5
Identities = 28/132 (21%), Positives = 39/132 (29%), Gaps = 14/132 (10%)
Query: 29 TEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAA 88
TE+ + + + A K + AP + A P+ AA K AD +
Sbjct: 198 TEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETN 257
Query: 89 AAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVP 148
AA K A P + V A A P K A K
Sbjct: 258 AALKTPATAPKAAAKNAKAPEAQPVSGTAAA--------------EPAPKEAAKAAAAAA 303
Query: 149 AKLQKGGKKPLG 160
+ +PLG
Sbjct: 304 KPALEDKPRPLG 315
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 41.4 bits (97), Expect = 4e-04
Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK 81
+ A +T K E KPAAA +A+ D+P AA+K A+K E A AA K
Sbjct: 303 RAAHVETAADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEA--------APRAADK 354
Query: 82 PADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGV 125
PA + A A DK A A PA+ A + PG
Sbjct: 355 PAGQAADPASSSADKPGASADAAARTPARARDAAAPDADTPPGG 398
Score = 37.2 bits (86), Expect = 0.010
Identities = 19/92 (20%), Positives = 30/92 (32%)
Query: 16 GDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPA 75
G++ K A K +K + A + A + A P +A +
Sbjct: 314 GERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGAS 373
Query: 76 AAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
A AA + + AA D G AA+
Sbjct: 374 ADAAARTPARARDAAAPDADTPPGGASLAAAQ 405
Score = 34.1 bits (78), Expect = 0.075
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
S K AA ++A+ A AA AAA A++PA AA + + A DK +AAK
Sbjct: 262 SPERKERAAAREARAAAAAPAATAA--AAAPAEEPAVAPMAAIRAAHVETAADKGERAAK 319
Query: 108 PAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKP 158
PA A +K K A + A KP KP
Sbjct: 320 PAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKP 370
Score = 34.1 bits (78), Expect = 0.078
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 17/118 (14%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAK----------------KDAKKAPEK 66
+++ ++ AA A+ + ++PA A + A K
Sbjct: 264 ERKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAA 323
Query: 67 KAAGDKKP-AAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTP 123
A DK AA+K A+K A AA + DK AG A+ A K A TP
Sbjct: 324 DKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTP 381
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 41.1 bits (97), Expect = 5e-04
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
+ ++ ++ P++ AA +A + AA + ++ KKAA A A
Sbjct: 530 ARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARA 589
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNV-PKKA 133
AKK A + A+A + + KKA A + KKA ++ ++ V P+KA
Sbjct: 590 KAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKA 646
Score = 38.8 bits (91), Expect = 0.003
Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 6/137 (4%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
K KK A + K + +A A + A A+ + AA KK A AA
Sbjct: 496 KAKKAAATQPIVIKAGARPDNSAVIAA---REARKAQARARQAEKQAAAAADPKKAAVAA 552
Query: 79 AKKPADKKAAAAKKPTDKKAG---DKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALP 135
A A K AA + + KKA A + KKA ++ + + P
Sbjct: 553 AIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDP 612
Query: 136 VKKGALKPKKGVPAKLQ 152
K AK
Sbjct: 613 KKAAVAAAIARAKAKKA 629
Score = 36.8 bits (86), Expect = 0.014
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK + A E++ + KK AA A A K A A+ + KK A A
Sbjct: 560 KKAAQQAANAEAEEEVDPKKAAVAAAIARAKA-KKAAQQAASAEPEEQVAEVDPKKAAVA 618
Query: 78 AAKKPAD-KKAAAAKKPTDKKAGD-KKAKAAKPAQKGVLKKA--GAKSTPGVKKNVPKKA 133
AA A KKA ++ D +KA A + +KA + + PKKA
Sbjct: 619 AAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKA 678
Score = 35.3 bits (82), Expect = 0.035
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
+K ++ KK E + + K AA A A K AAA + + AA
Sbjct: 465 EKAAREARHKKAAEARAAKDKDAVAAALARVKA--KKAAATQPIVIKAGARPDNSAVIAA 522
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKK---------AKAAKPAQKGVLKKAGAKSTPGVKK 127
A+K +A A+K A KK AKA K AQ+ A + ++
Sbjct: 523 REARKAQ-ARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQ-------AANAEAEEE 574
Query: 128 NVPKKA 133
PKKA
Sbjct: 575 VDPKKA 580
Score = 35.3 bits (82), Expect = 0.042
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKA--PEKKAAGDKKPAAAAA 79
K A ++ +PEE+ +A+ +A A AKK ++A ++ +K A AAA
Sbjct: 592 KKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAA 651
Query: 80 -KKPADKKAAAAKKPTDKKAGDKKAKAAKPA 109
+ +KAA + + + + KAA A
Sbjct: 652 IARAKARKAAQQQANAEPEEAEDPKKAAVAA 682
Score = 34.2 bits (79), Expect = 0.089
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPE---KKAAGDKKP 74
K ++ A + E+ E K AA A A K A + +A+ +KAA
Sbjct: 593 KAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAI 652
Query: 75 AAAAAKKPADKKAAAAKKPTD--KKAGDK----KAKAAKPAQ 110
A A A+K A ++A A + + KKA +AKA K AQ
Sbjct: 653 ARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQ 694
Score = 31.5 bits (72), Expect = 0.60
Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 19 KEKKPAEKKTTEKKPEEK--------KKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAG 70
+ KK AE + + K KK AA AG +P + A + K A
Sbjct: 472 RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQAR 531
Query: 71 DKKPAAAAAKKPADKKA---AAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGA 119
++ AA KKA AA + KKA + A A + K A A
Sbjct: 532 ARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVA 583
Score = 28.4 bits (64), Expect = 5.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
K KK ++ E + + AA A A + AA ++ + E + AAA
Sbjct: 625 KAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAI 684
Query: 79 AKKPADKKAAAA 90
A+ A KKAA
Sbjct: 685 ARAKA-KKAAQQ 695
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 39.4 bits (92), Expect = 8e-04
Identities = 29/81 (35%), Positives = 32/81 (39%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
PA A A AA A KAP K A +PAA AA KP + A K T
Sbjct: 128 PAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAP 187
Query: 99 GDKKAKAAKPAQKGVLKKAGA 119
K A PA+K KK
Sbjct: 188 KPTADKTATPAKKTTKKKKTK 208
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 39.8 bits (93), Expect = 0.001
Identities = 34/104 (32%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
+ E K A + E KKK A +A K A + A KA + + A
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKK 209
Query: 78 AAKKPADKKAAA-AKKPTDKKAGDKKAKAAKPAQKGVLKKAGAK 120
A A KKAAA AK K A + KA A K A +KA A
Sbjct: 210 KAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAA 253
Score = 38.6 bits (90), Expect = 0.003
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 15 LGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKP 74
L +++KK AE+ + ++K+ AA +A+ +A K A K A A +K AA KK
Sbjct: 111 LAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKK 170
Query: 75 AAAAAKKPA--DKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKK 132
A A A K A + K A + K A + K KA A+K +A K+ K K
Sbjct: 171 AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKA 230
Query: 133 ALPVKKGALKPKKGVPAKLQKGGKK 157
A K A K A+ K
Sbjct: 231 AAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 32.9 bits (75), Expect = 0.18
Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
E+ +K E+KK+ A + + + A A A + KA + K AAAAA
Sbjct: 101 ERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA 160
Query: 80 KKP---ADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPV 136
KK A KKA A K A + K KA A +A K+ KK +A
Sbjct: 161 KKAAAEAKKKAEAEAA--KKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEA--- 215
Query: 137 KKGALKPKKGVPAKLQKGGKK 157
KK A K AK K
Sbjct: 216 KKKAAAEAKAAAAKAAAEAKA 236
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 39.7 bits (93), Expect = 0.002
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 30 EKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADK--KA 87
KK + KK Q +P +A + KKA K A D + AKKP+ K K
Sbjct: 742 AKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDAR----KAKKPSAKTQKI 797
Query: 88 AAAKKPTDKKAGDKKAKA 105
AAA K K+A KK
Sbjct: 798 AAATKA--KRAAKKKVAE 813
Score = 36.6 bits (85), Expect = 0.015
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 28 TTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKA---PEKKAAGDKKPAAAAAKKPAD 84
++E+ P K A G AG K ++ KK P+ G+KK AAKK A
Sbjct: 726 SSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDAR 785
Query: 85 KKAAAAKKPTDKKAGDKKAKAAKPAQK 111
K + K T K A KAK A +
Sbjct: 786 KAKKPSAK-TQKIAAATKAKRAAKKKV 811
Score = 34.7 bits (80), Expect = 0.062
Identities = 21/74 (28%), Positives = 30/74 (40%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
+K +K A KK +++ KK A A K + +K +A +K AA
Sbjct: 740 EKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAA 799
Query: 77 AAAKKPADKKAAAA 90
A K A KK A
Sbjct: 800 ATKAKRAAKKKVAE 813
Score = 30.5 bits (69), Expect = 1.4
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 10 TFRNSLGDKKEKKPAEKKTTEKKPE-----EKKKPAAAGQASGSAGDKPAAAKKDAKKAP 64
T+R LGD+ E + E+K + ++ P G+ + K A KK K+
Sbjct: 699 TYR--LGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKR-- 754
Query: 65 EKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTP 123
++ +A + K A K +KA AK K A K+A K
Sbjct: 755 -RQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 30.1 bits (68), Expect = 1.6
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPA----DKKAAAAKKPTDKKAGDKKA 103
S+ P K A++ +K AG K K D KK K A
Sbjct: 726 SSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDAR 785
Query: 104 KAAKPAQKGVLKKAGAKSTPGVKKN 128
KA KP+ K A K+ KK
Sbjct: 786 KAKKPSAKTQKIAAATKAKRAAKKK 810
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 39.1 bits (91), Expect = 0.003
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
+K A KT E K +++ A Q + A + AK DA+ AA AA
Sbjct: 245 DKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAA-----TKEAA 299
Query: 80 KKPADKKAAAAKKPTDKK 97
K A KKA AK TD K
Sbjct: 300 KAAAAKKAETAKAATDAK 317
Score = 36.4 bits (84), Expect = 0.016
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKA--PEKKAAGDKKP 74
++ A K + +K E K A A A AAAK D KA E++ ++
Sbjct: 214 AAAAREAAPLKASLRKLERAKARADAELKR--ADKALAAAKTDEAKARAEERQQKAAQQA 271
Query: 75 AAAAAKKPADK-------KAAAAKKPTDKKAGDKKAKAAKPAQKGVLK 115
A AA + K AAAA K K A KKA+ AK A L
Sbjct: 272 AEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATDAKLA 319
Score = 34.8 bits (80), Expect = 0.047
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
E K A+K K +E K A Q + AA + D KA A K+ AAAA
Sbjct: 240 ELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKA----DAEAKRAAAAAT 295
Query: 80 KKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGV 113
K+ A KAAAAKK KA A AK A + V
Sbjct: 296 KEAA--KAAAAKKAETAKA----ATDAKLALEPV 323
Score = 32.1 bits (73), Expect = 0.36
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 42 AGQASGSAGDKPAAAKKDAKKAPEK-KAAGDKKPAAAAAKKPADKKAAAAKKPTDK-KAG 99
A +A+ A AAA ++A + K A A K ADK AAAK K +A
Sbjct: 202 AARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARAE 261
Query: 100 DKKAKAAKPAQKGVLKKAGAKSTPGVK-------KNVPKKALPVKKGALK 142
+++ KAA+ A + + AK+ K K K A K K
Sbjct: 262 ERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAK 311
Score = 31.0 bits (70), Expect = 0.86
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 34 EEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA----AAKKPADKKAAA 89
E K AAA + + ++ +A + DK AAA A + +++ A
Sbjct: 208 EAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKA 267
Query: 90 AKKPTDKKAGDKKAKAAKPAQKGVL--KKAGAKSTPGVKKNVPKKALPVK 137
A++ + AKA A++ K AK+ K K A K
Sbjct: 268 AQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATDAK 317
Score = 28.7 bits (64), Expect = 5.0
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 38 KPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDK- 96
K A A A A+ A+ A E K A AA K + +K AK D
Sbjct: 181 KAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAE 240
Query: 97 -KAGDKKAKAAK 107
K DK AAK
Sbjct: 241 LKRADKALAAAK 252
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 38.4 bits (89), Expect = 0.004
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 29 TEKKPEEKKKPAAAGQASG-SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKA 87
+ EE + + G AG PAA + DA+ A +A ++PAA ++
Sbjct: 359 STPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAA----SAAPEEPAA----LASEAHD 410
Query: 88 AAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTP 123
+ +K A AKP + V + P
Sbjct: 411 ETEPEVPEKAAP--IPDPAKPDELAVAGPGDDPAEP 444
Score = 37.3 bits (86), Expect = 0.009
Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 13/159 (8%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKD-AKKAPEKKAA--------- 69
E++PAE G + D A A K + ++ AA
Sbjct: 297 EREPAELAAAAVASAASAVGPV-GPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADR 355
Query: 70 -GDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKN 128
G+ PA + ++ A + A A +++ +
Sbjct: 356 DGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPE 415
Query: 129 VPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQV 167
VP+KA P KP + A +P G Q
Sbjct: 416 VPEKAAP-IPDPAKPDELAVAGPGDDPAEPDGIRRQDDF 453
Score = 28.8 bits (64), Expect = 4.3
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 16 GDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPA 75
GD + PA + + + AA + +P +K AP A + A
Sbjct: 377 GDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKA---APIPDPAKPDELA 433
Query: 76 AAAAKKPADKKAAAAKKPTDKKAGDKKA 103
A + ++ D + ++
Sbjct: 434 VAGP-GDDPAEPDGIRRQDDFSSRRRRW 460
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 38.0 bits (88), Expect = 0.005
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
E +P E K +K K A A A+ AAK AKKA KK A A
Sbjct: 846 EFEPRESKFPPRKTAAAK--AGAASAAFGGTVAVKAAKP-AKKAAAKKVAAKTAAAKTPR 902
Query: 80 KKPADKKA--AAAKKPTDKKA 98
K K A AA KP+ A
Sbjct: 903 KAAKKKAAPPAAGLKPSAALA 923
Score = 35.3 bits (81), Expect = 0.036
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 53 PAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKG 112
P +K +K KA K A AKK KK K A A P +
Sbjct: 849 PRESKFPPRKTAAAKAGAASAAFGGTVAV---KAAKPAKKAAAKKVAAKTAAAKTPRKAA 905
Query: 113 VLKKAGAKST 122
K A +
Sbjct: 906 KKKAAPPAAG 915
Score = 35.3 bits (81), Expect = 0.041
Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 56 AKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLK 115
+++K P K AA A AA A KKA KK A A K K
Sbjct: 848 EPRESKFPPRKTAA----AKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRK 903
Query: 116 KAGAKSTPGVKKNVPKKALPVKKGA 140
A K+ P P AL GA
Sbjct: 904 AAKKKAAPPAAGLKPSAALAAVIGA 928
Score = 34.9 bits (80), Expect = 0.055
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 21 KKPAEKKTTE-KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
+K A K A + + A K AAK A K P +KAA K AA
Sbjct: 857 RKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTP-RKAAKKKAAPPAAG 915
Query: 80 KKPADKKAA 88
KP+ AA
Sbjct: 916 LKPSAALAA 924
Score = 33.8 bits (77), Expect = 0.13
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 79 AKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVK-KNVPKKALPVK 137
+K A KA AA KAAKPA+K KK AK+ + KK
Sbjct: 856 PRKTAAAKAGAASAAFGGTV---AVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPP 912
Query: 138 KGALKPKKGVPAKLQKGGKKPLGKNE 163
LKP + A + G +P+ + E
Sbjct: 913 AAGLKPSAALAAVI---GAEPVARPE 935
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 37.8 bits (88), Expect = 0.006
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 19 KEKKPAEK-KTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
P + + + PA QA+ +P A + + + K A +PAA
Sbjct: 197 DLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAAN 256
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAA 106
AAK + ++ ++ A+A
Sbjct: 257 AAKAAKPEPMPDDQQKEAEQLQAAIAQAI 285
Score = 36.2 bits (84), Expect = 0.017
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
+ + + + A + K A ++ A + AA AA
Sbjct: 202 GQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAA 261
Query: 80 K-KPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGV 113
K +P + A +GV
Sbjct: 262 KPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGV 296
Score = 33.9 bits (78), Expect = 0.10
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 30 EKKPEEKKKPAAAGQASGSAGDKPAAAKK----DAKKAPEKKAAGDKKPAAAAAKKPADK 85
P + ++ A +++ +A A KKA ++ AA + A+
Sbjct: 198 LLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANA 257
Query: 86 KAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGA 119
AA +P + + + + AG
Sbjct: 258 AKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGK 291
Score = 31.6 bits (72), Expect = 0.53
Identities = 16/104 (15%), Positives = 26/104 (25%)
Query: 52 KPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
K P +A + A +A PA AA K + + A+K
Sbjct: 188 KQVEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKK 247
Query: 112 GVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGG 155
+ A + K + L+ G
Sbjct: 248 AATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGK 291
Score = 28.9 bits (65), Expect = 4.0
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSA--GDKPAAAKKDAKKAPEKKAAGDKKPAA 76
+ KK A ++ ++ A A+ +A P +K+A++ A A
Sbjct: 231 QPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAG 290
Query: 77 AAA 79
A
Sbjct: 291 KLA 293
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 37.3 bits (87), Expect = 0.008
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 57 KKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKA 103
++ K A KK A AAA + A K A AKK KK +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 37.3 bits (87), Expect = 0.009
Identities = 17/46 (36%), Positives = 18/46 (39%)
Query: 54 AAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAG 99
AKK K A A AA K A K AAKK +K G
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 35.8 bits (83), Expect = 0.024
Identities = 17/46 (36%), Positives = 18/46 (39%)
Query: 34 EEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
E K A A +A A K AKKAP KK A K A
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 34.3 bits (79), Expect = 0.081
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 KKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAG 118
++P AAAAKK A K AAA +K A K A+K +K G
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 34.3 bits (79), Expect = 0.093
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 61 KKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPA 109
+ P K AA K A A A + AAAKK KK KK A K
Sbjct: 815 PREP-KAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 33.1 bits (76), Expect = 0.22
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAP 64
++ K A KKT K A A + K AA K A+K
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 32.7 bits (75), Expect = 0.26
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTP 123
K A KK AA +K A PA+K KK A+ T
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 32.7 bits (75), Expect = 0.29
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 35 EKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAA 88
E ++P AA A A A A EK AA AAKK A +K
Sbjct: 814 EPREPKAAA-----AKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 31.2 bits (71), Expect = 0.72
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 27 KTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKP 74
K KK A A A+ + +K AA K AKK KK A K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKA 63
+E K A K T K A A+ A K AAKK A +
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 28.5 bits (64), Expect = 5.3
Identities = 10/45 (22%), Positives = 12/45 (26%)
Query: 89 AAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKA 133
K KK K AA + K KK +K
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 35.9 bits (83), Expect = 0.008
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 220 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP 279
M+ +IK P+ TE + + N F V +ANK IK AV+ ++ + V KVN
Sbjct: 1 MNINEVIKKPILTEKSYSLMSKN-VYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59
Query: 280 DGKKK 284
K+
Sbjct: 60 KKPKR 64
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 37.5 bits (87), Expect = 0.009
Identities = 33/120 (27%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKK---APEKKAAGDKKPAAAAAKKPADKKAAAAKKPTD 95
PA +G AS A D P A + AP A A A + AAA P
Sbjct: 471 PADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530
Query: 96 KKAGDKKAKAAKPAQKG-------VLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVP 148
+ A AA A+ G VL+ AG + + A P A PK P
Sbjct: 531 EARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAP 590
Score = 36.4 bits (84), Expect = 0.016
Identities = 22/104 (21%), Positives = 26/104 (25%), Gaps = 2/104 (1%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAK--KPTDK 96
A A A+ A A A P AAAA +A A P
Sbjct: 377 AGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATA 436
Query: 97 KAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGA 140
GD A P +A A S + P
Sbjct: 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAP 480
Score = 32.9 bits (75), Expect = 0.22
Identities = 26/122 (21%), Positives = 34/122 (27%), Gaps = 6/122 (4%)
Query: 28 TTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAK---KAPEKKAAGDKKPAAAAAKKPA- 83
T + P P A A D A A A + D +P A + A
Sbjct: 421 TRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAP 480
Query: 84 --DKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGAL 141
D AA +P + A A A A + P +A P A
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540
Query: 142 KP 143
P
Sbjct: 541 AP 542
Score = 32.9 bits (75), Expect = 0.22
Identities = 21/98 (21%), Positives = 24/98 (24%), Gaps = 2/98 (2%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
PA G + G A A AP +AA +A A A AA P A
Sbjct: 360 PAVTGGGAPGGGVPARVAG--AVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA 417
Query: 99 GDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPV 136
A PA A
Sbjct: 418 AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANA 455
Score = 32.1 bits (73), Expect = 0.35
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
A E +P PAAA A+ + G AAA D + + + D+ AAAA
Sbjct: 521 APAAAAPPAPEARPPT---PAAAAPAARAGG---AAAALDVLRNAGMRVSSDRGARAAAA 574
Query: 80 KKPADKKAAAAKKPTDKKA 98
KPA AAA K + A
Sbjct: 575 AKPAAAPAAAPKPAAPRVA 593
Score = 31.0 bits (70), Expect = 0.96
Identities = 35/128 (27%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 30 EKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAA 89
E P AA A A AA+++DA A A + P AAA A AA
Sbjct: 491 EPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAA 550
Query: 90 AKKPTDKKAGDK--------KAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGAL 141
A + AG + A AAKPA A V+ VP G
Sbjct: 551 AALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQ--VPTPRARAATGDA 608
Query: 142 KPKKGVPA 149
P A
Sbjct: 609 PPNGAARA 616
Score = 31.0 bits (70), Expect = 0.98
Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 2/111 (1%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK 81
P + A A+G+A AAA A +A AA A
Sbjct: 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDD 441
Query: 82 PADKKAAAAKKPTDKKAGDKKA--KAAKPAQKGVLKKAGAKSTPGVKKNVP 130
AD A K + + D + + A+P A A P P
Sbjct: 442 AADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEP 492
Score = 30.2 bits (68), Expect = 1.4
Identities = 21/109 (19%), Positives = 28/109 (25%), Gaps = 5/109 (4%)
Query: 32 KPEEKKKPAAAGQASGSAGDKPA-----AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKK 86
P AA A+ + + P A D A A A A +
Sbjct: 405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464
Query: 87 AAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALP 135
A+ P D + A A P A + VP P
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP 513
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 36.9 bits (85), Expect = 0.012
Identities = 50/146 (34%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 31 KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK-PADKKAAA 89
K EE K A A A A + AA + AK E KA +KK AAA +K A+KK AA
Sbjct: 178 KAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAA 237
Query: 90 AKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPA 149
AK DK A KA K A + G S KN PK K +G A
Sbjct: 238 AKAKADKAAAAAKAAERKAAAAALDDIFGGLS---SGKNAPKTGGGAKNA---SSQGSGA 291
Query: 150 KLQKGGKKPLGKNEQGQVKKALKSKL 175
G GQ+K A++S+
Sbjct: 292 AKNSGASGADIDQYAGQIKSAIQSRF 317
Score = 29.9 bits (67), Expect = 1.9
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
+KE+ A+++ + + EK+ Q A A KK A+ A K AA K AA
Sbjct: 107 EKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA 166
Query: 78 AAKKPADKKAAAAKKPTDKKAGDK--KAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALP 135
A K ++AA A + KA K KA A+ K + + A
Sbjct: 167 AEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAE 226
Query: 136 VKKGALKPKKGVPAKLQK 153
K A K K AK K
Sbjct: 227 EKAAAEKKKAAAKAKADK 244
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 36.5 bits (84), Expect = 0.013
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
E E++T ++K + K AA +A+ A K A A + ++ E++ A K AAAAA
Sbjct: 152 EVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAA 211
Query: 80 KKPADKKAAAAKKPTDKKAGD----KKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALP 135
K A A + +GD KA AA A+ +A K G K+ PK+ P
Sbjct: 212 KAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEEP 271
Score = 33.0 bits (75), Expect = 0.16
Identities = 30/109 (27%), Positives = 47/109 (43%)
Query: 16 GDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPA 75
+E+K A K + K A + G+ + D +KA K AA K A
Sbjct: 118 EVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKA 177
Query: 76 AAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPG 124
AA AK+ A + ++ T+++ KAKAA A+ A K++ G
Sbjct: 178 AALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQG 226
Score = 32.3 bits (73), Expect = 0.36
Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 6/161 (3%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK 81
K K E K++ AAA +A +A K + EK A K AAA AK
Sbjct: 46 KALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKA 105
Query: 82 PADKK----AAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVK--KNVPKKALP 135
A K +K A KA AA A+ L K + T V + K
Sbjct: 106 AALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKA 165
Query: 136 VKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLK 176
K A K A ++ + E+ ++ K+K K
Sbjct: 166 KAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAK 206
Score = 31.5 bits (71), Expect = 0.49
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K++ A + T E EEK K A A+ A A +K ++ + K A A
Sbjct: 182 KQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIA 241
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKP 108
AAK KAAAA + K A KK + K
Sbjct: 242 AAK----AKAAAAARAKTKGAEGKKEEEPKQ 268
Score = 31.1 bits (70), Expect = 0.67
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K++++ E+ T E+K + K K AAA +A +A K + EK AA K AAA
Sbjct: 76 KQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAA 135
Query: 78 AAKKPADKKAAAAKKPTDK---------KAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKN 128
AK A K KA K A AAK + K+ A++ G ++
Sbjct: 136 KAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEV 195
Query: 129 VPKKALPVKKGALKPKKGVPAKLQK 153
++ K A K A L K
Sbjct: 196 TEEEKAKAKAKAAAAAKAKAAALAK 220
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 36.7 bits (86), Expect = 0.014
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 65 EKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPA 109
+K + A A AK PA KKAA K+ K K
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 34.4 bits (80), Expect = 0.082
Identities = 11/44 (25%), Positives = 13/44 (29%)
Query: 55 AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
A K + + A D AA K K D KA
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 34.0 bits (79), Expect = 0.11
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 54 AAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAK-KPT 94
+ AP K AG K + K A+ K T
Sbjct: 818 PEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 33.6 bits (78), Expect = 0.13
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 60 AKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKA 103
A+K + + D A KK A K + K+ D KA
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 33.6 bits (78), Expect = 0.14
Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 54 AAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAA 106
A K PEK PA A K A + K A +K KA
Sbjct: 810 ALELLAEK--PEKLRYLADAPAKDPAGKKA-AVKFSRKTKQQYVASEKDGKAT 859
Score = 31.7 bits (73), Expect = 0.55
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKA--KAAKPAQKGVLKKAGAKST 122
A K K A P AG K A + K Q+ V + K+T
Sbjct: 815 AEKPE--KLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 30.5 bits (70), Expect = 1.3
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKP 82
P ++T EE + A A KKA K + +K
Sbjct: 797 PKGRETRAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFS---RKTKQQYVASE 853
Query: 83 ADKKAA 88
D KA
Sbjct: 854 KDGKAT 859
Score = 27.8 bits (63), Expect = 8.9
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 15 LGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSA 49
L D K PA KK K + K+ A + G A
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 27.8 bits (63), Expect = 9.6
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKA 63
+K EK K P KK S + A++KD K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVK---FSRKTKQQYVASEKDGKAT 859
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 36.4 bits (84), Expect = 0.019
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKP 74
KKE+K EK+ KK + +K A A + A D KK KK+ K+ D+ P
Sbjct: 23 KKEEKAKEKE--LKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKS-RKRDVEDENP 76
Score = 33.3 bits (76), Expect = 0.18
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 16 GDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPA 75
G + E + +K TE++ E KKK +A K AA+K+AK + + A D
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEE--KAKEKELKKLKAAQKEAKAKLQAQQASDGTNV 58
Query: 76 AAAAKKPADKKAAAAKKPTD-----KKAGDKKAKAAKPAQK 111
++K + K+ + P D G KK +++ A++
Sbjct: 59 PKKSEKKSRKRDVEDENPEDFIDPDTPFGQKKRLSSQMAKQ 99
Score = 32.6 bits (74), Expect = 0.27
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPG---VKKNVPKK 132
A KK ++ KK ++KA +K+ K K AQK K A+ V K KK
Sbjct: 7 EAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 36.3 bits (84), Expect = 0.021
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKP 82
P K+ +++ E ++ A QA +A + A AKK AK+ +K + K
Sbjct: 567 PLFKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGG 626
Query: 83 ADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
K AAA++ D D + A+K
Sbjct: 627 GGKSKAAAEREIDVSRLDIRVGLIVKAEK 655
Score = 28.6 bits (64), Expect = 4.8
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 4 VPIHRATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKA 63
V +R F S D+ + A + KK ++ K A K A +K A
Sbjct: 577 VEAYREKFAGSQADRAARAEAAE---AKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAA 633
Query: 64 PE 65
E
Sbjct: 634 AE 635
Score = 27.8 bits (62), Expect = 9.1
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 42 AGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDK 101
AG G+ K + +A +K AG + AA A+ KK A K G K
Sbjct: 558 AGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGK 617
Query: 102 KAKAAKPAQKGVLKKAGAKSTPGVKK 127
K + K G KA A+ V +
Sbjct: 618 KKQGKKAGGGGK-SKAAAEREIDVSR 642
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 35.8 bits (83), Expect = 0.025
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 37 KKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDK 96
PAAA A+ +A + +K AP + KP AA KP + AA PT
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPV 182
Query: 97 KAGD 100
D
Sbjct: 183 ARAD 186
Score = 35.8 bits (83), Expect = 0.025
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
G P AA A A + + +KP AAA + K + A AAK
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPP--EPAPAAK 176
Query: 108 PAQKGV 113
P V
Sbjct: 177 PPPTPV 182
Score = 31.6 bits (72), Expect = 0.48
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 24 AEKKTTEKKPEE--KKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK 81
+E T P AA + + K AA + A + KP A
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA 175
Query: 82 PADKKAAAAKKPTDKK 97
A P + +
Sbjct: 176 KPPPTPVARADPRETR 191
Score = 31.6 bits (72), Expect = 0.58
Identities = 16/80 (20%), Positives = 19/80 (23%), Gaps = 6/80 (7%)
Query: 69 AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKN 128
G PAAA A A K + K A A + P
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKP------KAAAPTPEPPAASKPTPPAAAKPPEPAP 173
Query: 129 VPKKALPVKKGALKPKKGVP 148
K A + VP
Sbjct: 174 AAKPPPTPVARADPRETRVP 193
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 35.6 bits (82), Expect = 0.025
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKK----AAGDK 72
+ ++ +K+ ++ EK A A + + A + AK+A E K A +K
Sbjct: 83 QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEK 142
Query: 73 KPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKK 132
K A K+ ++ A A KKA + K KA A+ KA AK+ K K
Sbjct: 143 KAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAK 202
Query: 133 A 133
A
Sbjct: 203 A 203
Score = 33.7 bits (77), Expect = 0.11
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K+ + +K+ E K ++ + A +A K A K+ ++A K AA KK AA
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
A KK + A A+ KA + KAKA K
Sbjct: 171 AKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 31.7 bits (72), Expect = 0.40
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K ++ K E + E+K K A QA A K AA K +KKA + K A
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAE 184
Query: 78 AAKK----PADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
A K A KA AAK +A K A A
Sbjct: 185 AKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAA 222
Score = 29.0 bits (65), Expect = 2.9
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 2/153 (1%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K+++ +KK ++ E +K+ AA + AA K + K A +K+ A
Sbjct: 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
AK +A A + +K K +A K A++ KA A++ + K K
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKK--AKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAK 180
Query: 138 KGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKA 170
A K + + + K KA
Sbjct: 181 AKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKA 213
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 34.6 bits (80), Expect = 0.037
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 54 AAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGV 113
KK KK + A G A ++ P + + A + KK K++ A + V
Sbjct: 183 KKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNEKSEV 242
Query: 114 LKK 116
K
Sbjct: 243 YKS 245
>gnl|CDD|222808 PHA00666, PHA00666, putative protease.
Length = 233
Score = 34.6 bits (79), Expect = 0.041
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 41 AAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGD 100
AA + + AGD PA ++ GDK AA A KP K A KP +KK G+
Sbjct: 25 AASEPAAGAGDNPAPQGDPTQEE------GDKPQPAAGADKPEGDKKADGDKPEEKKPGE 78
Query: 101 KKAKA 105
K A
Sbjct: 79 KPEGA 83
Score = 30.0 bits (67), Expect = 1.3
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKK 92
PA G + GDKP A K +KKA GDK KKP +K A +K
Sbjct: 37 PAPQGDPTQEEGDKPQPAAGADKPEGDKKADGDKPE----EKKPGEKPEGAPEK 86
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 34.8 bits (81), Expect = 0.044
Identities = 19/97 (19%), Positives = 23/97 (23%), Gaps = 15/97 (15%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAA---------- 69
A PA A A+ + A + K A E
Sbjct: 80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKG 139
Query: 70 -----GDKKPAAAAAKKPADKKAAAAKKPTDKKAGDK 101
D A AAA AAAA G +
Sbjct: 140 GRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGAR 176
Score = 32.9 bits (76), Expect = 0.19
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 40 AAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKK--AAAAKKPTDK- 96
AAAG A+ +A AAA A+ A + AA+K A + A+A K T K
Sbjct: 80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKG 139
Query: 97 ----KAGDKKAKAAKPAQKGVLKKAGAKSTP 123
K A AA A A + P
Sbjct: 140 GRVTKEDVLAALAAAAAAPAAPAAAAPAAAP 170
Score = 31.7 bits (73), Expect = 0.45
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 41 AAGQASG--SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
GQ G G AA A A AA + AAAAA++ D + AA+ K A
Sbjct: 68 TVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAAR----KLA 123
Query: 99 GDKKAKAAKPAQKG----VLK------KAGAKSTPGVKKNVPKKALPVKKGALKPKKGVP 148
+ A+ G V K A A + P A P GA +P++ VP
Sbjct: 124 AENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGA-RPEERVP 182
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 35.2 bits (81), Expect = 0.046
Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
PA A A +A PAA AP AA AA A + PA + AAA++ + +
Sbjct: 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444
Query: 99 GDKKAKAAKPAQKGVLKK----AGAKSTPGVKKNVPKKALPVKKGALKPKKGVP 148
G A A PA AG + P +A P A P
Sbjct: 445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498
Score = 33.7 bits (77), Expect = 0.12
Identities = 24/92 (26%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKP 82
PA A A A+ + A A++A + G PA A A P
Sbjct: 399 PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAP 458
Query: 83 ADKKAAAAKKP-----TDKKAGDKKAKAAKPA 109
A AA P A + A AA PA
Sbjct: 459 AAAARPAAAGPRPVAAAAAAAPARAAPAAAPA 490
Score = 31.0 bits (70), Expect = 0.99
Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 43 GQASGSAGDKPAAAKKDAKKAP---EKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAG 99
GQ+ G AG AAA A+ AP AA A AA A AAAA+ A
Sbjct: 366 GQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPAR 425
Query: 100 DKKAKAAKPA--QKGVLKKAGAKSTPGVKKNVPKKALP 135
A A A Q GA + P A
Sbjct: 426 RSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAAR 463
Score = 30.6 bits (69), Expect = 1.0
Identities = 29/131 (22%), Positives = 38/131 (29%), Gaps = 9/131 (6%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
E A ++ + + P PA A A+ +A +PAAA A A PAAA A
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPA 490
Query: 80 KKPADK-------KAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKK 132
D A+ P A A A T
Sbjct: 491 PADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAP--AAA 548
Query: 133 ALPVKKGALKP 143
P A +P
Sbjct: 549 PAPRAAAATEP 559
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 34.6 bits (79), Expect = 0.057
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 5/146 (3%)
Query: 11 FRNSLGDKKEKKPAE--KKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKA 68
FR + D KE++ E K+ + K E KK A +A A A K + +K+
Sbjct: 196 FRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQ 255
Query: 69 AGDKKP-AAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKK 127
P A + DK+ A +K +KA + K + A K K A K
Sbjct: 256 EAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKA--KDHKAFDLKQESK 313
Query: 128 NVPKKALPVKKGALKPKKGVPAKLQK 153
K+A + A K ++ V LQK
Sbjct: 314 ASEKEAEDKELEAQKKREPVAEDLQK 339
Score = 30.0 bits (67), Expect = 1.8
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
+E K K P+E K+ A + + + A D K + A
Sbjct: 255 QEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKA 314
Query: 79 AKKPADKKAAAAKKPTDKKAGD-KKAKAAKPAQKGVLKKAG-AKSTPG 124
++K A+ K A+K + A D +K K AQ L + S P
Sbjct: 315 SEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSSNPV 362
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 34.6 bits (80), Expect = 0.060
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 47 GSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAA 106
G PAAA P K+ A PAAA A+ PA AA A+ ++ D A
Sbjct: 279 EVEGAAPAAA-------PAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHAT 331
Query: 107 ----KPAQKGVLKKAGAKSTPGVKKNVPKK-ALPVKKGALKPKKGVPAKLQKGGKKP 158
+ A++ + A K T G K + K+ K A+K + PA GG P
Sbjct: 332 PLVRRLAREFGVNLAKVKGT-GRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGP 387
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 34.4 bits (79), Expect = 0.064
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 11 FRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAA--AKKDAKKAPEKKA 68
F +SL D+K KK K + + D+ K KK E
Sbjct: 4 FLDSLPDEKAPTKKPKKGDASKDSTEDD-----EDILEFLDELEQSEKAKPPKKPKEASR 58
Query: 69 AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
G + ++K A++ +KP + + +++ P K
Sbjct: 59 PGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSK 101
Score = 30.5 bits (69), Expect = 0.97
Identities = 11/68 (16%), Positives = 27/68 (39%)
Query: 12 RNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGD 71
+ G + K + K T ++KPA +++ S +K + ++ E++ +
Sbjct: 56 ASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEE 115
Query: 72 KKPAAAAA 79
A+
Sbjct: 116 TPDPIASI 123
Score = 30.1 bits (68), Expect = 1.4
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 13 NSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDK 72
S K KKP E KK ++ S+ +KPA +K+ E +
Sbjct: 43 QSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKP----RKSAESTRSSHP 98
Query: 73 KPAAAAAKKPADKKAAAAKKP 93
K A + + +++ P
Sbjct: 99 KSKAPSTESEEEEEPEETPDP 119
Score = 28.2 bits (63), Expect = 6.2
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 68 AAGDKKPAAAAAKKPADKK------------AAAAKKPTDKKAGDKKAKAAKPAQKGVLK 115
A KKP A K + + + KP K + + +K
Sbjct: 12 KAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKP 71
Query: 116 KAGAKSTPGVKKNVPKKA 133
+ ++ K P+K+
Sbjct: 72 TESSAASSEEKPAKPRKS 89
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 33.9 bits (78), Expect = 0.067
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 65 EKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKG 112
E K KP A K+P K A+K + K+ + +KG
Sbjct: 242 EAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289
Score = 32.0 bits (73), Expect = 0.33
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKK 102
S+ KP A K K AG K+P K A+ G KK
Sbjct: 240 SSEAKPKAKAK-------PKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287
Score = 31.2 bits (71), Expect = 0.56
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 71 DKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAG 118
+ KP A A K A K K + G + A K KK G
Sbjct: 242 EAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289
Score = 30.1 bits (68), Expect = 1.3
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA-AK 80
K E ++E KP+ K KP K A K+ K + G + +
Sbjct: 234 KLIENSSSEAKPKAKAKP------------KTAGIKRPVVKMEKTAEKGGRPASNGKRFT 281
Query: 81 KPADKK 86
P KK
Sbjct: 282 SPGRKK 287
Score = 28.5 bits (64), Expect = 4.3
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 12 RNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKK 67
NS + K K A+ KT K+P + + G +PA+ K KK
Sbjct: 237 ENSSSEAKPKAKAKPKTA-----GIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287
Score = 27.4 bits (61), Expect = 9.9
Identities = 10/47 (21%), Positives = 13/47 (27%)
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTP 123
A K A K A K+P K + + G K
Sbjct: 243 AKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 33.4 bits (77), Expect = 0.089
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 54 AAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGV 113
A++ ++A +++AAG+K+ A +KP K A +K +A + + +
Sbjct: 110 VQAQRAEQQAKKREAAGEKEKAPRRERKP---KPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Query: 114 LKKA 117
L
Sbjct: 167 LTVG 170
Score = 31.8 bits (73), Expect = 0.29
Identities = 17/76 (22%), Positives = 28/76 (36%)
Query: 60 AKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGA 119
AK ++ KK AA K+ A ++ K +K +A+ +P V +
Sbjct: 108 AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISEL 167
Query: 120 KSTPGVKKNVPKKALP 135
VK K A+
Sbjct: 168 TVGQAVKVKAGKSAMD 183
Score = 31.0 bits (71), Expect = 0.59
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPV 136
A AK A + AKK ++A +K KA + +K K K P +K P+
Sbjct: 106 AKAKVQAQRAEQQAKK---REAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162
Query: 137 KKGALKPKKGVPAKLQKG 154
L + V K K
Sbjct: 163 DISELTVGQAVKVKAGKS 180
Score = 29.5 bits (67), Expect = 1.6
Identities = 15/70 (21%), Positives = 23/70 (32%)
Query: 36 KKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTD 95
++ A +A+G P +K KAP KK + +D +
Sbjct: 115 AEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVK 174
Query: 96 KKAGDKKAKA 105
KAG A
Sbjct: 175 VKAGKSAMDA 184
Score = 27.6 bits (62), Expect = 6.7
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 34 EEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGD--KKPAAAAAKKPADKKAAAAK 91
EE K A +A A + AA +K+ E+K +K A+KP + +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 92 KPTDKKAGDKKAKAAKPAQKGV 113
K KA K A
Sbjct: 164 ISELTVGQAVKVKAGKSAMDAT 185
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.1 bits (79), Expect = 0.090
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 54 AAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAK 104
+ + KK +K+ +KK A+K A KK A A K + K
Sbjct: 405 NLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 31.4 bits (72), Expect = 0.63
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
E + E + P E+KK K A+K A+K +KAA K A
Sbjct: 392 LLAEGEEEEGENGNLSPAERKK----------LRKKQRKAEKKAEKEEAEKAA--AKKKA 439
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKP 108
AA K A KK G+K A+ P
Sbjct: 440 EAAAKKAKGPDGETKKVDPDPLGEKLARTEDP 471
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
+ G++ + A KK ++ A A+K +KAAA KK K
Sbjct: 394 AEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGET 453
Query: 108 PA 109
Sbjct: 454 KK 455
Score = 29.5 bits (67), Expect = 2.8
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 15 LGDKKEKKPAEKK--TTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDK 72
L DK E++ ++K Q + A+K A K + AA
Sbjct: 387 LHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Query: 73 KPAAAAAKKPAD 84
K KK
Sbjct: 447 KGPDGETKKVDP 458
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 33.8 bits (77), Expect = 0.091
Identities = 35/123 (28%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK 81
KKTT+KK E+KKPAA K K K K + AAKK
Sbjct: 1 MAETKKTTKKKTTEEKKPAAK--------------KATTSKETAKTKKTAKTTSTKAAKK 46
Query: 82 PADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGAL 141
A K + K T KK K K ++ V KK K + L L
Sbjct: 47 AAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKL 106
Query: 142 KPK 144
K
Sbjct: 107 PKK 109
Score = 32.2 bits (73), Expect = 0.30
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 76 AAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALP 135
KK ++K AAKK T K K K AK KKA K KK
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTV 65
Query: 136 VKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVL 178
+ KK AK K KK E + L L
Sbjct: 66 KFEKTESVKKESVAK--KTVKKEAVSAEVFEASNKLFKNTSKL 106
Score = 29.1 bits (65), Expect = 2.8
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 57 KKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKK 116
+ KK +KK +KKPAA A + T K A KAAK A K K
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATT------SKETAKTKKTAKTTSTKAAKKAAKVKKTK 54
Query: 117 AGAKSTPGVKKNVPKKALPVKKGALKPKKGVPA 149
+ +T V K K+ K A
Sbjct: 55 SVKTTTKKVTVKFEKTESVKKESVAKKTVKKEA 87
Score = 29.1 bits (65), Expect = 3.0
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
+EKKPA KK T K K K A S A K A KK K K +
Sbjct: 14 EEKKPAAKKATTSKETAKTK-KTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTES 72
Query: 79 AKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
KK + K K+ + + K K
Sbjct: 73 VKKESVAKKTVKKEAVSAEVFEASNKLFK 101
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.9 bits (78), Expect = 0.11
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 6/127 (4%)
Query: 25 EKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPAD 84
E+KT KK K+ + +S S+ D + D K + K A + A + P
Sbjct: 1230 EQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPS 1289
Query: 85 KKAAAAKKPTDK-----KAGDKKAKAAKPAQKGVLKKAGAKSTPGVK-KNVPKKALPVKK 138
K+ K K KK A KK+ K+ K K K+A +
Sbjct: 1290 KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQS 1349
Query: 139 GALKPKK 145
L +
Sbjct: 1350 SRLLRRP 1356
Score = 28.9 bits (65), Expect = 4.1
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDK----PAAAKKDAKKAPEKKAAGDKKPAAAA 78
K+P+ + + + K + A KK EKK A KK
Sbjct: 1282 QYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRV 1341
Query: 79 AKKPADKKAAAAKKPTDKK 97
+ A + + ++P KK
Sbjct: 1342 KQASASQSSRLLRRPRKKK 1360
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 33.1 bits (76), Expect = 0.19
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 61 KKAPEKKAAGDKKPAAAAAKKPADKKAAAAKK-PTDKKAGDKKAKAAKPAQKGVLK 115
K+ EK++ + + K A+K A + TD A D A AAK +
Sbjct: 767 KQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 32.9 bits (76), Expect = 0.24
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 33 PEEKKKPAAAGQA-SGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAK 91
+K +PAAA +A ++ + A+ + A A EK A K+ A P + K
Sbjct: 437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA-KKEAYRWKATNPVEVKKEPVA 495
Query: 92 KPTDKKAGDKKAKAAKPAQKGVL 114
P K + K + A K
Sbjct: 496 TPKALKKALEHEKTPELAAKLAA 518
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 32.7 bits (75), Expect = 0.28
Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
A A A +A PAAA A AP A PA AAA +PA A A P+
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAAP----AAAAAPAPAAAPQPAPAPAPAPAPPSPAGN 447
Query: 99 GDKKAKAAKPAQKGVLKKAGAKSTPGV 125
+ P +
Sbjct: 448 APAGGAPSPPPAAAPSAQPAPAPAAAP 474
Score = 28.4 bits (64), Expect = 6.4
Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 33 PEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKK 92
PEE +PAA + A PA A A K A A+
Sbjct: 609 PEEAARPAAPAAPAAPAAPAPAGAAAAP-AEASAAPAPGVAAPEHHPKHVAVPDASDGGD 667
Query: 93 PTDKKAGDKKAKAAKPAQ 110
KAG A PA
Sbjct: 668 GWPAKAGGAAPAAPPPAP 685
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 32.2 bits (73), Expect = 0.32
Identities = 23/92 (25%), Positives = 34/92 (36%)
Query: 34 EEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKP 93
+ ++PA A A +P + AK P+ A K+ AA AA +
Sbjct: 146 QTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPA 205
Query: 94 TDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGV 125
+ A + A PAQ AG K+ V
Sbjct: 206 PKETATTAPVQTASPAQTTATPAAGGKTAGNV 237
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 32.4 bits (74), Expect = 0.36
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 38 KPAAAGQASGSAGDK----PAAAKKDAKKAPEKKAAGDKKPAAAAAKK-PADKKAAAAKK 92
KPAAA +A+ A K P AA A + AA A AAA PA AAA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 93 PTDKKAGDKKAKAAKPAQKGV 113
P A A A A V
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAV 445
Score = 31.6 bits (72), Expect = 0.54
Identities = 27/103 (26%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 46 SGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKA 105
+ +A A KK + A AAAA PA AAAA P A A
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV 426
Query: 106 AKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVP 148
A PA A A + V A + P + P
Sbjct: 427 AAPAA-AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP 468
Score = 31.2 bits (71), Expect = 0.76
Identities = 29/72 (40%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 23 PAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAA----GDKKPAAAA 78
PAEKKT E PAAA A +A PAAA A AP A AAA
Sbjct: 375 PAEKKTP--ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA 432
Query: 79 AKKPADKKAAAA 90
A A A AA
Sbjct: 433 APAAAPAAAPAA 444
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 31.6 bits (72), Expect = 0.39
Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 56 AKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKA 103
A++ AK P KK A KK AA AKK KKAAA K KKA K A
Sbjct: 253 AERRAKGGPGKKPA--KKATAAKAKKTTAKKAAAKKAAKTKKAAKKAA 298
Score = 29.3 bits (66), Expect = 2.3
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 50 GDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKK 92
K KK AKKA KA K A AA K A K AAKK
Sbjct: 256 RAKGGPGKKPAKKATAAKAK--KTTAKKAAAKKAAKTKKAAKK 296
Score = 27.7 bits (62), Expect = 8.0
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 71 DKKPAAAAAKKPADKK-AAAAKKPTDKKAGDKKAKAAKPAQK 111
+++ KKPA K AA AKK T KKA KKA K A K
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAK 295
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 30.8 bits (70), Expect = 0.43
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 52 KPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAA--AAKKPTDKKAGDKKAKAAKPA 109
K A K + A A A P KKAA AA A + A AA
Sbjct: 94 KVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEE 153
Query: 110 Q 110
+
Sbjct: 154 E 154
Score = 30.4 bits (69), Expect = 0.70
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 28 TTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKA 87
T + + K A A P A KK A AAA A + A A
Sbjct: 92 TLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEA-AAAEAAAPAAEAAAAAA 150
Query: 88 AAAK 91
A +
Sbjct: 151 AEEE 154
Score = 27.4 bits (61), Expect = 5.7
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 21 KKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAK 80
K K + + A G + + K A +A A A + AAAA +
Sbjct: 94 KVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEE 153
Query: 81 K 81
+
Sbjct: 154 E 154
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 31.6 bits (72), Expect = 0.51
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
P A + S G K A + P+K A KKPA K A A
Sbjct: 175 PTAPATVAPSKGAKVPATAETHPTPPQKPAT--KKPAVNHHKTATVAVPPATSGKPKSGA 232
Query: 99 GDKKAKAAKPA 109
+A ++ PA
Sbjct: 233 ASARALSSAPA 243
Score = 28.5 bits (64), Expect = 5.1
Identities = 16/82 (19%), Positives = 20/82 (24%), Gaps = 2/82 (2%)
Query: 40 AAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAA--AAKKPTDKK 97
AA+ A G+ P A A K A + K K A
Sbjct: 162 AASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVP 221
Query: 98 AGDKKAKAAKPAQKGVLKKAGA 119
+ A L A A
Sbjct: 222 PATSGKPKSGAASARALSSAPA 243
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 31.7 bits (72), Expect = 0.52
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 55 AAKKDAKKAPEKKAAGDKKPAAAAAKKP-ADKKAAAAKKPTDKKAGDKKAKAAKPAQKGV 113
A + A+ A KK +K A A KK A K+ AA ++ + ++ A A+ +
Sbjct: 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRA 381
Query: 114 LKKAGAKSTPGVKKNVPKKALPVKKGALKPK 144
KA K N + + P+
Sbjct: 382 AVKAKKKGLIDASPNEDTPSENEESKGSPPQ 412
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 31.8 bits (73), Expect = 0.55
Identities = 11/51 (21%), Positives = 16/51 (31%)
Query: 60 AKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQ 110
+ + AAG + + AAA + A K K A P
Sbjct: 183 SGRTMAAIAAGKGRAPKPFMTPKGNAGLAAAARAAAAAAAKKAKKKALPDF 233
Score = 30.6 bits (70), Expect = 1.3
Identities = 17/52 (32%), Positives = 17/52 (32%)
Query: 45 ASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDK 96
ASG AA K A K AAA A A K A K D
Sbjct: 182 ASGRTMAAIAAGKGRAPKPFMTPKGNAGLAAAARAAAAAAAKKAKKKALPDF 233
>gnl|CDD|234336 TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
It is often found on plasmids. This protein family the
member related to ParB, and is designated PRTRC system
ParB family protein.
Length = 554
Score = 31.6 bits (72), Expect = 0.60
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 24 AEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPA 83
K KK E AA A+ +AG A +K + AA A + +P+
Sbjct: 315 TTKVAARKKAERAAAAAAQKPAAPAAGPGTPAKEKSPAETATSGAAKPAAKKAVPSSQPS 374
Query: 84 DK 85
++
Sbjct: 375 NR 376
Score = 30.8 bits (70), Expect = 0.96
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 55 AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKA 105
AA+K A++A A PAA +K A K KKA
Sbjct: 319 AARKKAERAAAAAAQKPAAPAAGPGTPAKEKSPAETATSGAAKPAAKKAVP 369
Score = 30.4 bits (69), Expect = 1.4
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 55 AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVL 114
A++ A A +K AA AA PA +K+ A + K +
Sbjct: 323 KAERAAAAAAQKPAA-----PAAGPGTPAKEKSPAETATSGAAKPAAKKAVPSSQPSNRV 377
Query: 115 K 115
K
Sbjct: 378 K 378
Score = 29.7 bits (67), Expect = 2.0
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 71 DKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVP 130
+K A AA A K AA A P AK PA+ + P KK VP
Sbjct: 320 ARKKAERAAAAAAQKPAAPAAGP------GTPAKEKSPAE----TATSGAAKPAAKKAVP 369
Query: 131 KKALP 135
Sbjct: 370 SSQPS 374
Score = 29.3 bits (66), Expect = 2.6
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 58 KDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPA 109
KKA AA +KPAA AA A K P + AAK A
Sbjct: 319 AARKKAERAAAAAAQKPAAPAA---GPGTPAKEKSPAETATSGAAKPAAKKA 367
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 31.3 bits (72), Expect = 0.63
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 68 AAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKK 127
G+ + AAAA P A A A AA A KA +P V+K
Sbjct: 78 EEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKA----SPAVRK 133
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 31.3 bits (71), Expect = 0.63
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 12 RNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGD 71
+S + EKKP E K E P+ KKP + + K + + +
Sbjct: 27 TSSNSKQPEKKP-EIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNP---E 82
Query: 72 KKPAAAAAKKPADKKAAAAKKPTDKKAGDK 101
KKP + K+ +K KKP K D+
Sbjct: 83 KKPDPSKNKEEIEKPKDEPKKPDKKPQADQ 112
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.3 bits (71), Expect = 0.68
Identities = 17/124 (13%), Positives = 41/124 (33%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK 81
P K + KK ++ K + G K A+ K++ K ++ KK +K
Sbjct: 173 SPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEK 232
Query: 82 PADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGAL 141
++ ++ ++ + A+ L + + P ++
Sbjct: 233 KEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEK 292
Query: 142 KPKK 145
+ +K
Sbjct: 293 EKRK 296
Score = 28.6 bits (64), Expect = 4.9
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 1/122 (0%)
Query: 18 KKEKKPAEKKTTEK-KPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
K+P+ K PE K K A Q + K + KA K KK
Sbjct: 158 ANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNI 217
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPV 136
++ K KK + ++++ + +L+ A+ T + + P
Sbjct: 218 MSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPS 277
Query: 137 KK 138
+
Sbjct: 278 GE 279
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 30.6 bits (69), Expect = 0.68
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 45 ASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAK-KPADKKAAAAKKPTDKKAGD-KK 102
ASG+ AA K +AA K AA K PA AAA A D K
Sbjct: 103 ASGADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADDLTK 162
Query: 103 AKAAKPAQKGVLKKAG 118
PA L +AG
Sbjct: 163 ITGVGPALAKKLNEAG 178
Score = 27.5 bits (61), Expect = 7.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Query: 54 AAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPA 109
A+ DA AG + AA AA A K+AA P A A AA A
Sbjct: 102 LASGADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGA 157
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 31.4 bits (71), Expect = 0.72
Identities = 27/131 (20%), Positives = 36/131 (27%), Gaps = 14/131 (10%)
Query: 42 AGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKP--ADKKAAAAKKPTDKKAG 99
Q + AG+ A + K K A K A A A+ +A K +
Sbjct: 264 KAQTAAFAGEPSKADRV--GKPVAKAPAKVAKERALAELPARVAELQAQLNKAQHELAQK 321
Query: 100 DKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKPL 159
AA A P P P P + L G PL
Sbjct: 322 AAPLAAA----------QAALDAPAETATAPSAPAPQVSAESSPAQPGSYLLAAPGDAPL 371
Query: 160 GKNEQGQVKKA 170
G+ Q Q +
Sbjct: 372 GELAQAQSARE 382
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 30.8 bits (70), Expect = 0.76
Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 12 RNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGD 71
L + K +KKK + D AA + KK K+
Sbjct: 208 YKELLKSLLIPEFKPLDKYLKESKKKK-------RETEEDVEAAESRAEKKRKSKEEIKK 260
Query: 72 KKPAAAAAKKPADKKAAAAKK 92
KKP + K K A K
Sbjct: 261 KKPKESKGVKALKKVVAKGMK 281
>gnl|CDD|226676 COG4223, COG4223, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 422
Score = 31.1 bits (70), Expect = 0.81
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 2/116 (1%)
Query: 14 SLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASG--SAGDKPAAAKKDAKKAPEKKAAGD 71
S + KP K E+ PAAA +A+ +P A + +A AG
Sbjct: 3 SEREPVRIKPGAVPIVAAKAAEQTDPAAAEEAADADQPKAEPVHADQTDLEADGVGQAGT 62
Query: 72 KKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKK 127
++ A A A +P + A D A+ A A+ A TP K+
Sbjct: 63 EESAEAKAVEPEMPYPGSDAPADRTAASDANAEDAAAARSASKPTATRGPTPAAKR 118
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 31.0 bits (71), Expect = 0.93
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKA 98
AAA + A + A A + + + AA A PA + AAAA
Sbjct: 63 AAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAP 122
Query: 99 GD----KKAKAAKPAQKGVLKKAG 118
++ + + A++G +KAG
Sbjct: 123 EAAQARERRERGEAARRGAARKAG 146
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 30.9 bits (71), Expect = 0.94
Identities = 26/63 (41%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 47 GSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAA 106
A PAAA A AP AA PA AAA PA AAA A KA A
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA-------AAPGKAPHA 245
Query: 107 KPA 109
PA
Sbjct: 246 SPA 248
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 31.0 bits (70), Expect = 1.0
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 2/145 (1%)
Query: 14 SLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKK 73
KPAEK + ++ K A+ + S S G + ++A K KK ++K
Sbjct: 714 PYKKGVPPKPAEKDSLSAPKKQTSKTAS--EKSSSKGKRKHKNDEEADKIESKKQRLEEK 771
Query: 74 PAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKA 133
++ + + +++ K + K + +K+ + + + P K+ ++
Sbjct: 772 SSSCSPSSSSSHHHSSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQED 831
Query: 134 LPVKKGALKPKKGVPAKLQKGGKKP 158
G + K
Sbjct: 832 TSSSSGPFSASSTKSSSKSSSTSKH 856
Score = 28.0 bits (62), Expect = 9.2
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 6/144 (4%)
Query: 21 KKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPA---AA 77
K+P EK+ K + P + S+ K + A+K PE K PA A
Sbjct: 472 KQPMEKEGKVKSSGSQYHPESKEPPPKSSS-KEKRRPRTAQKGPESGRGKQKSPAQSEAP 530
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
++ KK KKP AGD++ ++ G L + TP + K
Sbjct: 531 PQRRTVGKKQP--KKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKP 588
Query: 138 KGALKPKKGVPAKLQKGGKKPLGK 161
+PK VP +K K K
Sbjct: 589 SPRKEPKSSVPPAAEKRKYKSPSK 612
Score = 28.0 bits (62), Expect = 9.5
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K EK A + T +PE + G + + D+P AA K ++K +K P AA
Sbjct: 543 KPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAA 602
Query: 78 AAKKPADKKAAAAKKP 93
+K K
Sbjct: 603 EKRKYKSPSKIVPKSR 618
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 30.9 bits (70), Expect = 1.1
Identities = 16/100 (16%), Positives = 25/100 (25%), Gaps = 9/100 (9%)
Query: 8 RATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKK 67
R+ K + + P A S A+ + P
Sbjct: 36 RSLVAEGAAGPVAKAA---EQMAAPEAAEAAPLPAAAES------IASPEVPPPVPPAPA 86
Query: 68 AAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
G+ A + PA A A +P + AA
Sbjct: 87 QEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAAI 126
Score = 30.2 bits (68), Expect = 1.5
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 30 EKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAA 89
E + A A ++ AA + A+ AP AA A+ P A
Sbjct: 31 ELRELRSLVAEGAAGPVAKAAEQMAAPEA-AEAAPLPAAAES--IASPEV--PPPVPPAP 85
Query: 90 AKKPTDKKAGDKKAKAAKPAQ 110
A++ A A A A
Sbjct: 86 AQEGEAPAAEQPSAVPAPSAA 106
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 30.0 bits (68), Expect = 1.1
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 36 KKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTD 95
+ K + SG KK K EKK KKP +K+ + K KP D
Sbjct: 5 RSKLLQKAKESGLEFI--ERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPAD 62
Query: 96 KKAGDKKA 103
KK K
Sbjct: 63 KKKPFDKP 70
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.4 bits (64), Expect = 1.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 31 KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGD 71
K AAA A+ +A AAA ++ KK E++ D
Sbjct: 40 ANGSAKLSAAAAAAAAAAAAAAAAAAAEEEKKEEEEEEEED 80
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 29.4 bits (66), Expect = 1.5
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 24 AEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDA-KKAPEKKAAGDKKPAAAAAKKP 82
AE K K E++ K A A A +A KK E +A + AA A
Sbjct: 99 AEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAV 158
Query: 83 ADKKAAAAKKPTDKKAGDKKAKAAKPAQ 110
A ++AAAA++ ++A ++A A + A+
Sbjct: 159 AAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 28.2 bits (63), Expect = 4.4
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 9 ATFRNSLGDKKEKKPAEKKT-TEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKK 67
A F +K+ K A+K ++ K KK A + A + A KK A+ A
Sbjct: 101 AKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAA 160
Query: 68 AAGDKKPAAAAAKKPADKKAAAAKK 92
A + PA++ A
Sbjct: 161 EEAAAAEEEEAEEAPAEEAPAEESA 185
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 30.3 bits (69), Expect = 1.5
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 40 AAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA--KKPADKKAAAAKKPTDKK 97
AAA + +A AAA A A AAG A AA A A+AA P +
Sbjct: 300 AAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAGVAAGLGGVARAGASAAASPLRRA 359
Query: 98 AGDKKAKAAKPAQKGVLKKAGAKSTPG 124
A + AGA+ST G
Sbjct: 360 ASRAAESMKSSFR------AGARSTGG 380
Score = 28.0 bits (63), Expect = 6.3
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 40 AAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAG 99
AA G + G A A A AAAAA+ A A+ + AG
Sbjct: 273 AAVGTGLAAGG--AAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAG 330
Query: 100 DKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
A GV + + + +++ + A +K
Sbjct: 331 GSGAAGVAAGLGGVARAGASAAASPLRRAASRAAESMK 368
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 30.4 bits (68), Expect = 1.6
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 5/123 (4%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAK-----KDAKKAPEKKAAGDK 72
KK+ P E++ ++K E + P A+G + GDK K++ + E G+
Sbjct: 493 KKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGET 552
Query: 73 KPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKK 132
K K K+ +K PT K + P KK +
Sbjct: 553 KEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSP 612
Query: 133 ALP 135
LP
Sbjct: 613 KLP 615
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 29.7 bits (67), Expect = 1.8
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 38 KPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPA-----DKKAAAAKK 92
+ A A + + A A AA ++ + AA++ A D A
Sbjct: 76 EGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTG 135
Query: 93 PTDKKAG---DKKAKAAKPAQKGVLKKAGAK 120
T + KK +A AQ+ A
Sbjct: 136 VTGRVTKEDIIKKTEAPASAQQPAPAAAAKA 166
Score = 29.7 bits (67), Expect = 2.0
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 22 KPAEKKTTEKKPEEKKKPAAAGQASGSAGD--KPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
K+ E+K E AAA + + PAA + + + A
Sbjct: 82 AAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVT 141
Query: 80 KKPADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
K+ KK A + A AKA +
Sbjct: 142 KEDIIKK-TEAPASAQQPAPAAAAKAPANFTR 172
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.9 bits (67), Expect = 1.8
Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 4/206 (1%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAA 76
+ K + E++ +++ +E+KK KP K+ K+ P++K +K
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE-KRPPKEKEKEKEKKVE 155
Query: 77 AAAKKPADKKAAAAKK---PTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKA 133
+ +KK + P K +P ++ ++A ++ G +
Sbjct: 156 EPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNE 215
Query: 134 LPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSV 193
K+ + + + + +LK + +
Sbjct: 216 EREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTE 275
Query: 194 RFHRPRTQRGGAAPKYMRRSVPRRNR 219
R + A P R + PR R
Sbjct: 276 TRPRTSLRPPSARPASARPAPPRVKR 301
Score = 29.9 bits (67), Expect = 2.1
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 3/146 (2%)
Query: 31 KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAA 90
+K K A A + +K+ ++ E+K +KP K K+ A
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP-KEEPKDRKPKEEAKE 139
Query: 91 KKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKK-ALPVKKGALKPKKGVPA 149
K+P +K +K+ K +P + KK K PKK KK + +K A
Sbjct: 140 KRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQA 199
Query: 150 K-LQKGGKKPLGKNEQGQVKKALKSK 174
GK + + K+ K
Sbjct: 200 AREAVKGKPEEPDVNEEREKEEDDGK 225
>gnl|CDD|215104 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase;
Provisional.
Length = 891
Score = 29.9 bits (67), Expect = 2.0
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 7 HRATFRNSLGDKKEKKPAEKKTTEKKPEEK-----KKPAAAGQASG-SAGDKPAAAKKDA 60
RA + +K +K T +K P++K +P A QA SA + KKD
Sbjct: 822 RRALLPEANSEKSSQKQQGGSTKDKAPQKKYVNTSSRPRRAAQAEKNSAENAAVPKKKDY 881
Query: 61 KKAP 64
K+A
Sbjct: 882 KRAT 885
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 29.8 bits (67), Expect = 2.0
Identities = 15/77 (19%), Positives = 22/77 (28%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
SA A A + + G P A + + A AA A K
Sbjct: 379 SAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAALK 438
Query: 108 PAQKGVLKKAGAKSTPG 124
+ L++A G
Sbjct: 439 MQLRAFLREARPHVEEG 455
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 29.8 bits (67), Expect = 2.1
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Query: 9 ATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKA 68
F + D+ EK+ + + + + S + + + K +KK KK
Sbjct: 370 NGFIKGIYDQIEKE-MDAFSIQASSAGLIGSSEKSLGSNESSPAASNSDKGSKK---KKG 425
Query: 69 AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKS 121
A P D++ A K ++K G K+ K KK KS
Sbjct: 426 KSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKS 478
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 29.6 bits (66), Expect = 2.2
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 33 PEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKK 92
P E + A + + P A + AP D A A K A AAA
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAP------DPPAPAPAPAKTAAPAAAAPVS 260
Query: 93 PTD 95
D
Sbjct: 261 SGD 263
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 29.5 bits (66), Expect = 2.2
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 24 AEKKTTEKKPEEKKKPAAAGQASGSAGDKPA--AAKKDAKKAPEKKAAGDKKPAAAAAKK 81
A KK K E+ PA A+ A PA AA AP A +KP ++
Sbjct: 4 ALKKIFGKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRR 63
Query: 82 PADKKAAAAKKPTD 95
K A+ K D
Sbjct: 64 ERKPKPASLWKLED 77
Score = 28.7 bits (64), Expect = 4.8
Identities = 17/67 (25%), Positives = 24/67 (35%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K E + P A A + PAAA A+K + K ++KP A
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70
Query: 78 AAKKPAD 84
+ K D
Sbjct: 71 SLWKLED 77
Score = 28.3 bits (63), Expect = 6.1
Identities = 16/61 (26%), Positives = 20/61 (32%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
++PA A AP A A PA A K DK ++K K A
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPAS 71
Query: 108 P 108
Sbjct: 72 L 72
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 29.8 bits (66), Expect = 2.3
Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 8/160 (5%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKK--- 73
++KE+ E K E K A S +A + AK KA E +A+ D K
Sbjct: 264 ERKERGANRVAGGEAKGVESKAVDAKHGESRAAQLRADDAKAGETKAGEARASADAKAGA 323
Query: 74 --PAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPK 131
AAA P AA T A + A KG + + P + P
Sbjct: 324 HTHAAAMPAVPEQADDAARSPATTPVAVIRAAHVEHGLDKGEPRASKPAEKPAAATDKPP 383
Query: 132 KALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKAL 171
+ K K + P K +K L K+ + +KAL
Sbjct: 384 EKASDKPSPEKTSEKTP---DKSHEKQLDKSSEPVAEKAL 420
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 29.6 bits (67), Expect = 2.4
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGS--AGDKPAAAKKDA--------KKAPEKK 67
KK K + + + EE K AAA A G D KK +
Sbjct: 14 KKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALR 73
Query: 68 AAG 70
A G
Sbjct: 74 AKG 76
Score = 29.6 bits (67), Expect = 2.6
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 60 AKKAPEKKAAGD--KKPAAAAAKKPADKKAAAA----KKPTD------KKAGDKKAKAAK 107
AK+A E+KAA + K AAAAA K +K+AAA PT KK +AK +
Sbjct: 19 AKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVE 78
Query: 108 P 108
P
Sbjct: 79 P 79
>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional.
Length = 171
Score = 29.0 bits (65), Expect = 2.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 61 KKAPEKKAAGDKKPAAAAAKKPAD---KKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKA 117
+KA + + + D KPAAA+ + A+ + +G + A A P QK + +
Sbjct: 44 EKAKKLEQSSDAKPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRP 103
Query: 118 GAKSTPGVKKNVP 130
+ VK VP
Sbjct: 104 LFTAAREVKTVVP 116
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 29.1 bits (65), Expect = 2.4
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 28 TTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKA 87
TE + A+ A A +P A+ ++ A E KAA A A + A
Sbjct: 129 PTEPATVAPVRNASVPTAERPAITRPVRAQAVSEPAVEPKAA-KTATATEAKVQTASPAQ 187
Query: 88 AAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKS 121
A P K A + P+ L+ + + S
Sbjct: 188 TPATPPAGKGAAASGQLKSAPSSHYTLQLSASGS 221
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 29.6 bits (66), Expect = 2.4
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 13 NSLGDKKEKKPAEKKTTEKKPEEK---KKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAA 69
G ++E K E E E + + + + D+ AA +
Sbjct: 479 RRRGPRRESKSQEPSGGESPNPELPANNNNSNSNNNNNNGADRKEAAATTGNATTTSNGS 538
Query: 70 GDKKPAAAAAKKPADKKAAAAKKPTDKKAGDK 101
G P +++ P K+ ++K G K
Sbjct: 539 GTSVPLPVSSEPPQHKEGPVITFYSEKMKGMK 570
>gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional.
Length = 602
Score = 29.3 bits (66), Expect = 2.5
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 56 AKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAK 107
KK AK+ + +A AA A+K A +KAA K KKA KKAK AK
Sbjct: 346 YKKIAKQILKTEAIIMPIIEAALARKLAAEKAAETKA--AKKA--KKAKVAK 393
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 28.6 bits (64), Expect = 2.9
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 12 RNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGD 71
+ S +K +++ T P K AA + +A A++ + PE
Sbjct: 93 KRSYAANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQK---PETTPEPV 149
Query: 72 KKPAAAAAKKPADKKAAAAKKP 93
KPAA A K A +++ KP
Sbjct: 150 VKPAADAEPKTAAPSPSSSDKP 171
>gnl|CDD|219001 pfam06371, Drf_GBD, Diaphanous GTPase-binding Domain. This domain
is bound to by GTP-attached Rho proteins, leading to
activation of the Drf protein.
Length = 187
Score = 28.4 bits (64), Expect = 3.0
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 82 PADKKAAAAKKPTDKKA----GDKKAKAAKPAQKGVLKKAGAKSTP 123
P +K+ KP +KK + L K+ +P
Sbjct: 23 PEEKRRPMRAKPIEKKWQLVVQYLLTNFQGESLSKSLSKSNETGSP 68
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 29.2 bits (65), Expect = 3.1
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
KK+ + K+ T+K E +P + S ++ AA K++KK P + ++ AAA
Sbjct: 70 KKKPTRSVKRATKKTVVEISEP--LEEGSELVVNEDAALDKESKKTPRRT----RRKAAA 123
Query: 78 AAKKPADKK 86
A+ ++K
Sbjct: 124 ASSDVEEEK 132
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 29.2 bits (66), Expect = 3.2
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 22/86 (25%)
Query: 61 KKAPEKKA----AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGV--- 113
+K PE+ A A P A +PA AAA K A A PAQ G+
Sbjct: 521 RKRPEQPALATFAMPDVPPAPTPAEPAAPVVAAAPKA---------AAATPPAQPGLLSR 571
Query: 114 ----LKK--AGAKSTPGVKKNVPKKA 133
LK +G + T ++ PK
Sbjct: 572 FFGALKALFSGGEETKPQEQPAPKAE 597
Score = 28.5 bits (64), Expect = 5.2
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 30 EKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKK-------P 82
E++ E+K+P A+ + D P A AP AA A A+
Sbjct: 515 EEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQPGLLSRFFG 574
Query: 83 ADKK---AAAAKKPTDKKAGDKKAKAAKP 108
A K KP ++ A +AK +
Sbjct: 575 ALKALFSGGEETKPQEQPAPKAEAKPERQ 603
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 29.0 bits (66), Expect = 3.3
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 203 GGAAPKYMRRSVPRRNRMDAFNIIKY--PLTTESAMKKIEDNNTLV-----FIVHLQANK 255
G +P MD + K+ L ES + +E F+ H QAN
Sbjct: 195 GSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLTPDDIDWFVPH-QANL 253
Query: 256 HHIKAAVKKMYDINVAKVNTLI 277
I+A K++ + KV +
Sbjct: 254 RIIEAVAKRL-GLPEEKVVVNL 274
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 28.8 bits (63), Expect = 3.4
Identities = 37/135 (27%), Positives = 53/135 (39%)
Query: 15 LGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKP 74
L D++ + A K+ K+ +++++ A+ +A + AAAKK A + +K A
Sbjct: 164 LKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPA 223
Query: 75 AAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKAL 134
AAAA A A A K A AA PA+ A K A
Sbjct: 224 KAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA 283
Query: 135 PVKKGALKPKKGVPA 149
P K A P K A
Sbjct: 284 PPAKAAAPPAKAAAA 298
Score = 28.4 bits (62), Expect = 5.4
Identities = 38/131 (29%), Positives = 45/131 (34%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
K+E + EK + E+ AAA Q + + + KK AK A KAA AAA
Sbjct: 175 KQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAA 234
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
K A A AA P A KA A KA A A P K
Sbjct: 235 PPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 294
Query: 138 KGALKPKKGVP 148
A K
Sbjct: 295 AAAAPAKAAAA 305
Score = 28.4 bits (62), Expect = 5.9
Identities = 47/146 (32%), Positives = 53/146 (36%), Gaps = 3/146 (2%)
Query: 21 KKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAK 80
KK A+ K K AA + +A K AAA A P K AA K AA AK
Sbjct: 214 KKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAK 273
Query: 81 KPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGA 140
A AAA KA AKAA K A A + P P KA A
Sbjct: 274 AAAPPAKAAAPP---AKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 330
Query: 141 LKPKKGVPAKLQKGGKKPLGKNEQGQ 166
P A K P+GK G+
Sbjct: 331 ATPPAKAAAPPAKAAAAPVGKKAGGK 356
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 28.9 bits (64), Expect = 3.6
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDK---KPAAAAAKKPADKKAAAAKKPTD 95
P AA +A + + + + EK+ A K +P A A+ P +AAA
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPS-- 417
Query: 96 KKAGDKKAKAAKPAQKG 112
+ K A P
Sbjct: 418 ------EGKTAGPVSNQ 428
Score = 27.8 bits (61), Expect = 9.6
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 46 SGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAA-------KKPTDKKA 98
S +K AAKK + PE + A A+AA P++ K A P + A
Sbjct: 381 SAQTAEKETAAKK-PQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDA 439
Query: 99 GDKKAKAAKPAQ--KGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQ 152
D+ AA AQ ++ A TP + KA + A + +Q
Sbjct: 440 PDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQ 495
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 29.0 bits (65), Expect = 3.9
Identities = 25/105 (23%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 2 GMVPIHRATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAK 61
G F + G K P K G+A+G G A+ A
Sbjct: 344 GRKGSGSGAFGTAAGVGDVKSPGAKAAM----------RTLGRAAGDTGVSVASGVGQAP 393
Query: 62 KAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAA 106
K+ AAG A A + A A + AG A AA
Sbjct: 394 KSAGGSAAGKSAVAKATGVQAAPGWARRMASGQNVFAGASTAAAA 438
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 28.9 bits (65), Expect = 4.0
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 17 DKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPE---KKAAGDKK 73
+K K ++ +K EE+++ + +AKK K A +K
Sbjct: 468 EKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKI 527
Query: 74 PAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQ 110
AA K KK + D + K +
Sbjct: 528 SKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDE 564
Score = 28.9 bits (65), Expect = 4.4
Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 7/125 (5%)
Query: 8 RATFRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKK 67
R F G+K+ + KK + + +EKK+ S + + +K K
Sbjct: 422 RRKFGPENGEKEAESKKLKKENKNEFKEKKE-------SDEEEELEDEEEAKVEKVANKL 474
Query: 68 AAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKK 127
+K ++ D++ K + KK + K + + K A S VK
Sbjct: 475 LKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKV 534
Query: 128 NVPKK 132
KK
Sbjct: 535 KKKKK 539
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 28.7 bits (65), Expect = 4.6
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 65 EKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPA 109
E ++A D A AAA + A AAA KKA A A PA
Sbjct: 80 EGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPA 124
Score = 27.6 bits (62), Expect = 9.1
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 30 EKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAA 89
E + PAAA +A+ +A PAAA A K A PAA A P
Sbjct: 82 ESASDAGAAPAAAAEAAAAA---PAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138
Query: 90 AKKPTDKKA 98
T ++A
Sbjct: 139 MVTMTVREA 147
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 28.7 bits (65), Expect = 4.7
Identities = 10/56 (17%), Positives = 27/56 (48%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKK 73
+K+++ +K+ +K KKK + ++ +++A++ E++ KK
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|219401 pfam07404, TEBP_beta, Telomere-binding protein beta subunit (TEBP
beta). This family consists of several telomere-binding
protein beta subunits which appear to be specific to the
family Oxytrichidae. Telomeres are specialised
protein-DNA complexes that compose the ends of
eukaryotic chromosomes. Telomeres protect chromosome
termini from degradation and recombination and act
together with telomerase to ensure complete genome
replication. TEBP beta forms a complex with TEBP alpha
and this complex is able to recognise and bind ssDNA to
form a sequence-specific, telomeric nucleoprotein
complex that caps the very 3' ends of chromosomes.
Length = 375
Score = 28.5 bits (63), Expect = 4.9
Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
KE A K + +EK K A A + K K KA K A G K +
Sbjct: 207 KEGNTATLKIQDIFVQEKGKDALNKAADHTDVAKVKGGAKGKGKAAAKSAKGKK----LS 262
Query: 79 AKKPADKKAAAAKKPTD---KKAGDKKAKAAKPAQKGVLKKAGAKST-PGVKKNVPKKAL 134
AKK +A +K D K +K + + QK K+ AK T G KK VP
Sbjct: 263 AKKGDSASSADVRKSVDKIVKYTPNKPSSRKETPQKSQAGKSSAKKTTTGSKKAVPANPS 322
Query: 135 PVKKGALK 142
P K + K
Sbjct: 323 PSGKKSTK 330
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 28.4 bits (64), Expect = 5.2
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 55 AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
A + P KK + K+ +K K+ D K K+ K + +++
Sbjct: 382 APSEKKTGKPSKKVLAKRA----EKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 28.0 bits (63), Expect = 7.6
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 72 KKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKK 116
K P+ KP+ K A + +K+ K K K + K+
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
>gnl|CDD|237212 PRK12808, PRK12808, flagellin; Provisional.
Length = 476
Score = 28.4 bits (63), Expect = 5.4
Identities = 34/146 (23%), Positives = 40/146 (27%), Gaps = 13/146 (8%)
Query: 21 KKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAK 80
K +K + K E+ AA AA +A K G A A
Sbjct: 204 KAAFDKAKDDTKAEDSNILDAAADGFKDGKADDAAKDVEAIKTALSAFTGAATLEEAEAA 263
Query: 81 KPA------------DKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKN 128
K A KKAA K K A K L A K+ G K N
Sbjct: 264 KTAFEVAQKDLVDTYTKKAALTKDAVADLDTAKTTSTRSKAAKD-LVAAYDKAKSGAKPN 322
Query: 129 VPKKALPVKKGALKPKKGVPAKLQKG 154
KA K A + K
Sbjct: 323 DVAKAYLEAKMAYEKDNNAIDGKSKL 348
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 28.5 bits (64), Expect = 5.5
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 12 RNSL-GDKKEKKPAEKKTTEKKPEEKKKPAAAGQAS-GSAGDKPAAAKKDAKKAPEKKAA 69
R+SL D P E KK +KP + ++ KPA++ ++ +
Sbjct: 619 RDSLLSDLDALSPKE--GDGKKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLD 676
Query: 70 GDKKPAAAAAKKPADKKAAAAKKPT 94
D + A + A + +A P
Sbjct: 677 PDFELATHQSVPEAALASGSAPAPP 701
>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed.
Length = 271
Score = 27.8 bits (62), Expect = 6.2
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 33 PEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKK 92
P K AA A+ +A AAA + A AP AA + PA A A + +
Sbjct: 109 PAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQTLVIDR 168
Query: 93 P 93
P
Sbjct: 169 P 169
Score = 27.4 bits (61), Expect = 8.3
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 48 SAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPT 94
+ + AAK + A A AAAA A AAAA +P
Sbjct: 103 ARDRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPP 149
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 28.2 bits (63), Expect = 6.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 80 KKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTP 123
KK KK +A+ K K KK+KA K+AG TP
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK--KRAGPLYTP 790
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 28.1 bits (63), Expect = 6.5
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 38 KPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPAD------------- 84
+ A A+ A +PAAA + A AA + A+ A ++ A
Sbjct: 78 EEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTG 137
Query: 85 KKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
KK + +K A AA PA + A V + +KA+ +
Sbjct: 138 PGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAER 190
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 28.0 bits (62), Expect = 7.0
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 9/114 (7%)
Query: 43 GQASGSAGDKPAAAKKDAKKAPEKKA-AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDK 101
+ G PA + KKAPE D+ P A + P + A P ++
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPG-ARPAELPSPASAPTPEQ 432
Query: 102 KAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGAL-----KPKKGVPAK 150
+ A+ A + A + V P L +G + P +
Sbjct: 433 QPPVARSAP--LPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQ 484
>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.
Length = 250
Score = 27.5 bits (61), Expect = 7.2
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 1 MGMVPIHRATFRNSLGDKKEKKPAEKKT--TEKKPEEKKKPAAAGQASGSAGDKPAAAKK 58
M + + RA+ + K + ++ + + A+ G + KP+ ++
Sbjct: 1 MISMSLSRASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLER 60
Query: 59 DAKKAPEKKAAGDKKPAAAAAKKPA 83
E A D PAAAA A
Sbjct: 61 GGTLEGEAAAGKDPGPAAAAKTSLA 85
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 28.2 bits (63), Expect = 7.4
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 35 EKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPT 94
PAA A P A+ A + A PAAAA + AAAA
Sbjct: 390 GAPTPAAPAAPP-PAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGD 448
Query: 95 DKKAGDKKAKAAKPAQKGVLKKA 117
+A K KPA L++
Sbjct: 449 RWRAFVAFVKGKKPALGASLEQG 471
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 564
Score = 27.9 bits (62), Expect = 8.2
Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 22/179 (12%)
Query: 5 PIHRATFRNSLGDKKEKKPAEKKTTEKKPEEKKKP----AAAGQASGSAGDKPAAAKKDA 60
P R+ +L D+ K ++ P ++ G+ S + +
Sbjct: 164 PRPRSFSELNLTDRTPAKVRSSRSELGAPSPSGGTSCPSSSGGRRSSIGSRRLRGSASLR 223
Query: 61 KKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAK 120
KK A ++ K ++++AK P K KA A
Sbjct: 224 KKVAVLSAPRKPGSRSSDCKSSPRARSSSAKSPFKSSIQRKATKALSKLSL------RAS 277
Query: 121 STPGVKKNVPKKALPVKKGALKPK------------KGVPAKLQKGGKKPLGKNEQGQV 167
K + + A P K A P +P+ L K GK+ L + + Q
Sbjct: 278 PKDTSKSSKSEVAPPKKSEAKVPSSSKKWTDGNVSWDSLPSSLSKLGKEALRQRDVAQK 336
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 28.0 bits (62), Expect = 8.2
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 4/109 (3%)
Query: 32 KPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAK 91
G + + + + A AAAAA+ P A +
Sbjct: 445 SGSVGGGGRRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGER 504
Query: 92 KPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGA 140
P +K ++ + V A + P +K A PV+ A
Sbjct: 505 AP--RKRRRRRNGRPVEGAEPVSTPVPAPAAP--RKPTQVVATPVRAAA 549
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 27.7 bits (61), Expect = 8.3
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Query: 65 EKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKA-----KAAKPAQKGVLKKAGA 119
++ + K A + KKP KK + + G K K Q V +
Sbjct: 28 QQTTTSENKSAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFHLEKGFGNKQLQVERIIDR 87
Query: 120 KSTPGVKKNV-----PKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSK 174
+K PK P KK +KP K +P+K +K P ++ +V + ++
Sbjct: 88 IFQSSLKNRTEIKVKPKNN-PQKKQNIKPVKPIPSKPEKPEDSPSPFYDKARVMTPINNQ 146
Query: 175 LKVL 178
L L
Sbjct: 147 LATL 150
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 27.8 bits (62), Expect = 8.5
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 55 AAKKDAKKAPEKK------AAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKP 108
KKD K+AP KK A K A + A AA+ K+ KK K
Sbjct: 309 PIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSK 368
Query: 109 AQKGVLKKAGAK 120
+ +K AG
Sbjct: 369 EEAAAIKAAGKA 380
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 26.5 bits (59), Expect = 8.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 74 PAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKG 112
P AAAA A AA ++ +++ +++ ++ + A G
Sbjct: 61 PVAAAAAAAAAAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 26.5 bits (59), Expect = 9.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 39 PAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
P AA A+ +A AA +K ++ E++ ++ AAA
Sbjct: 61 PVAAAAAAAAAAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.348
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,045,278
Number of extensions: 1437336
Number of successful extensions: 6602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3654
Number of HSP's successfully gapped: 848
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.8 bits)