RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6374
(305 letters)
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X
3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T
Length = 142
Score = 158 bits (401), Expect = 9e-49
Identities = 73/138 (52%), Positives = 103/138 (74%)
Query: 168 KKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNIIK 227
KA +K V+KG + + K+RTS F P+T + APKY ++VP NR+D++ +I+
Sbjct: 5 AKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIE 64
Query: 228 YPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYV 287
P+T+E+AMKK+ED N LVF V ++ANK+ IK AVK++Y+++V KVNTL+RP+G KKAYV
Sbjct: 65 QPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYV 124
Query: 288 RLARDYDALDVANKIGII 305
RL DYDALD+AN+IG I
Sbjct: 125 RLTADYDALDIANRIGYI 142
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 150 bits (381), Expect = 1e-45
Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 161 KNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPR---R 217
K + Q K+ KV K G K T VRF RP+T + APKY R
Sbjct: 3 KENKTQAVNKAKNTAKVAKKGSSITKHKTYTGVRFFRPKTLQLAKAPKYSRTVRAHLKVS 62
Query: 218 NRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277
+D +++K PLTTE AMKK+ED NT+VF VH ++ K IK+A +K+Y++ V VNTL
Sbjct: 63 GHLDNHSVVKTPLTTEKAMKKMEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLN 122
Query: 278 RPDGKKKAYVRLARDYDALDVANKIGII 305
G KKAY+RLA D D+L +ANKIG+I
Sbjct: 123 TITGNKKAYIRLAADSDSLTLANKIGLI 150
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 146 bits (371), Expect = 3e-44
Identities = 94/139 (67%), Positives = 108/139 (77%)
Query: 167 VKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNII 226
++ALK V G +++KIRTSV FHRP+T + PKY R S P RN++D + I+
Sbjct: 14 TQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQIL 73
Query: 227 KYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAY 286
KYPLTTESAMKKIEDNNTLVFIV L+A+K IKAAVKKMYDI KVNTLIRPDGKKKAY
Sbjct: 74 KYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAY 133
Query: 287 VRLARDYDALDVANKIGII 305
V+L DYDALDVANKIGII
Sbjct: 134 VKLTPDYDALDVANKIGII 152
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 145 bits (367), Expect = 2e-43
Identities = 108/166 (65%), Positives = 123/166 (74%), Gaps = 11/166 (6%)
Query: 140 ALKPKKGVPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPR 199
A K KK PA + K KALK+K VLKG H + +KIRTS F RP+
Sbjct: 2 APKAKKEAPAPPKAEAKA-----------KALKAKKAVLKGVHSHKKKKIRTSPTFRRPK 50
Query: 200 TQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIK 259
T R PKY R+S PRRN++D + IIK+PLTTESAMKKIEDNNTLVFIV ++ANKH IK
Sbjct: 51 TLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIK 110
Query: 260 AAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 305
AVKK+YDI+VAKVNTLIRPDG+KKAYVRLA DYDALDVANKIGII
Sbjct: 111 QAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 141 bits (357), Expect = 2e-41
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 147 VPAKLQKGGKKPLGKNEQGQVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAA 206
+ +K K + + K + ++ +P+T +
Sbjct: 43 ISSKKLHTQKSFNFHDAVTPMNKPSFGR-DLMVAQATEAVAPTTEEAATSQPKTSKKAKK 101
Query: 207 PKYMRRSVPRRNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMY 266
KY R +D + I++ P+ TE+A+K I D N+L+F V ++A+K I+ A+ +
Sbjct: 102 LKY------PRRILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFF 155
Query: 267 DINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 304
+ V KVNTLIRPDG KKAY+ L ++Y+A ++A KIGI
Sbjct: 156 GVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 193
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S*
1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S*
1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S*
1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Length = 85
Score = 133 bits (337), Expect = 7e-40
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 281
++++IK+P TE AM ++ N L F V +A+K + AV++ YD+ V +VNT DG
Sbjct: 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG 61
Query: 282 KKKAYVRLARDYDALDVANKIGI 304
+KKA VRL+ D DA +VA++IG+
Sbjct: 62 EKKAVVRLSEDDDAQEVASRIGV 84
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R
2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q*
1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U
1vow_U 1voy_U 1vp0_U
Length = 95
Score = 64.5 bits (158), Expect = 1e-13
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 220 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP 279
M ++I++ P+ +E A +E F V +A K IK A+++ + + V ++T+ P
Sbjct: 1 MSHYDILQAPVISEKAYSAME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVP 59
Query: 280 DGK--------------KKAYVRLA 290
GK KKA VRLA
Sbjct: 60 -GKRKRVGRFIGQRNDRKKAIVRLA 83
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T*
3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T
3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ...
Length = 93
Score = 63.3 bits (155), Expect = 3e-13
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 218 NRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277
+++ P +E A +E +NT+V V A K IKAAV+K++++ V VNTL+
Sbjct: 3 REERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLV 62
Query: 278 RPDGK--------------KKAYVRLARDYD 294
GK KKAYV L +
Sbjct: 63 VK-GKVKRHGQRIGRRSDWKKAYVTLKEGQN 92
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA;
3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T
3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W
2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X
2wdl_X ...
Length = 92
Score = 62.2 bits (152), Expect = 1e-12
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 281
A+++I P+ +E A F VH +A K IK AV+ + + V KVNTL G
Sbjct: 2 AYDVILAPVLSEKAYAGFA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVR-G 59
Query: 282 K--------------KKAYVRLARDYD 294
K KKA V++A
Sbjct: 60 KKKRLGRYLGKRPDRKKAIVQVAPGQK 86
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 33.9 bits (78), Expect = 0.070
Identities = 14/98 (14%), Positives = 23/98 (23%)
Query: 61 KKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAK 120
E K KK A+ A +K + ++ P + G +
Sbjct: 69 STLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGER 128
Query: 121 STPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKP 158
+ + KPKK P
Sbjct: 129 NGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALP 166
Score = 31.6 bits (72), Expect = 0.37
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 52 KPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQK 111
K KK K P A G A ++ + P +++++ + ++
Sbjct: 75 KKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLP--DWLDEEESEGERNGEE 132
Query: 112 GVLKKAGAKSTPGVKKNVPKKALPVKKGALKPKK 145
+K + PKK +
Sbjct: 133 ANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALP 166
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 33.3 bits (75), Expect = 0.088
Identities = 23/88 (26%), Positives = 31/88 (35%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAA 78
K + K + + AAA + S K KK + K
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 79 AKKPADKKAAAAKKPTDKKAGDKKAKAA 106
K A KK AA KKP +KK ++ K A
Sbjct: 393 KKAAATKKPAADKKPAEKKPTTEEKKPA 420
Score = 29.5 bits (65), Expect = 1.4
Identities = 23/116 (19%), Positives = 31/116 (26%)
Query: 55 AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVL 114
A +K + KK A K + KAA +
Sbjct: 304 APRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSE 363
Query: 115 KKAGAKSTPGVKKNVPKKALPVKKGALKPKKGVPAKLQKGGKKPLGKNEQGQVKKA 170
+K P KK + K + KK K KKP K + KK
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 27.1 bits (59), Expect = 8.0
Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 30 EKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAA 89
+ + A + AK + K P KK K KKP KK
Sbjct: 334 TMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKP--KKPVV 391
Query: 90 AKKPTDKKAGDKKAKAAKPAQKGVLKKAGA 119
KK K K A+ KK A
Sbjct: 392 GKKAAATKKPAADKKPAEKKPTTEEKKPAA 421
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 32.2 bits (72), Expect = 0.26
Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 1/141 (0%)
Query: 18 KKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAA 77
+ PA + + E A + + + +A+ K+ ++ A +
Sbjct: 72 SETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKP-KSDKETEAKPEATNQG 130
Query: 78 AAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVK 137
KPA + K+ + + K + K PG +++ V
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVV 190
Query: 138 KGALKPKKGVPAKLQKGGKKP 158
+ + V K K K
Sbjct: 191 LASRRTGHLVNEKASKEAKVQ 211
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 30.3 bits (67), Expect = 1.0
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 51 DKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKK---AAAAKKPTDKKAGDKKAKAAK 107
A AK++ E G+ + + P ++ A +KP ++K + K AAK
Sbjct: 19 TALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKEDKPAAAK 78
Query: 108 PAQKG 112
P
Sbjct: 79 PETPK 83
Score = 27.6 bits (60), Expect = 6.8
Identities = 11/57 (19%), Positives = 17/57 (29%)
Query: 16 GDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDK 72
D + + + + PE P + +KPA K K K K
Sbjct: 27 NDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKEDKPAAAKPETPK 83
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein
complex, structural protein/DNA complex; 1.91A
{Sterkiella nova} SCOP: b.40.4.3
Length = 385
Score = 30.0 bits (66), Expect = 1.1
Identities = 34/141 (24%), Positives = 47/141 (33%), Gaps = 4/141 (2%)
Query: 19 KEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGD--KKPAA 76
K K A+ K K K +A + SA D + K K P K + D +K A
Sbjct: 239 KVKGGAKGKGKAAAKAAKGKKLSAKKGDSSAADVRKSVDKIVKYTPSKGSRKDTPQKSQA 298
Query: 77 AAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPV 136
AA K + KK P+ K K+A K + + KK K +
Sbjct: 299 PAAGKSSAKKGGKKAVPSAPSPSGK--KSALTTDKMTMAQFVKYLDWHEKKKGGKVSSGG 356
Query: 137 KKGALKPKKGVPAKLQKGGKK 157
K + A K K
Sbjct: 357 KVLGKRSAGKASATSGKASKA 377
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.1
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 42/117 (35%)
Query: 174 KLKVLKGGHHTRT----RKIRTSVRF-------HRPRTQRGGAAPKYMRRSVPR-RNRMD 221
K K G +R RK++ S RF H + + +
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH----------LLVPASDLINKDLV 444
Query: 222 AFNI------IKYPL-TTESA--MKKIEDNNT-------LVFIVH----LQANKHHI 258
N+ I+ P+ T ++ + + + + V Q HI
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 29.4 bits (66), Expect = 1.7
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 4/68 (5%)
Query: 56 AKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLK 115
K +K + + K + + KA KA+ P Q
Sbjct: 631 WGKQGGGTQQKAEGKKRP----STKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFT 686
Query: 116 KAGAKSTP 123
+
Sbjct: 687 RLLGLGAS 694
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 29.0 bits (65), Expect = 2.0
Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 3/138 (2%)
Query: 20 EKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAA 79
+ E+ +K + + + A + +P A +++ PE A P A
Sbjct: 71 VVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQA 130
Query: 80 KKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVPKKALPVKKG 139
+ + AA++ K+ + A + + ++ V + A +K
Sbjct: 131 EAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEK- 189
Query: 140 ALKPKKGVPAKLQKGGKK 157
K+G A+L++ K
Sbjct: 190 --PTKEGFFARLKRSLLK 205
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 28.6 bits (63), Expect = 2.1
Identities = 21/113 (18%), Positives = 33/113 (29%)
Query: 11 FRNSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAG 70
F N LG + P ++ + PA G AS A + +A +
Sbjct: 5 FFNMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPR 64
Query: 71 DKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTP 123
+ P + P KP +KK Q+ LK +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFD 117
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome,
RNA modifying enzyme, isomerase; 2.60A {Escherichia
coli}
Length = 237
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 13 NSLGDKKEKKPAEKKTTEKKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKA 68
L + + K + K K+P + + G +PA+ K KK
Sbjct: 180 FKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 235
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.9
Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 163 EQGQVKKALKSKLKV 177
E+ +KK L++ LK+
Sbjct: 18 EKQALKK-LQASLKL 31
Score = 27.2 bits (59), Expect = 4.2
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 57 KKDAKK--APEKKAAGDKKPAAA 77
K+ KK A K A D PA A
Sbjct: 19 KQALKKLQASLKLYADDSAPALA 41
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 27.8 bits (62), Expect = 4.1
Identities = 3/59 (5%), Positives = 16/59 (27%)
Query: 69 AGDKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKK 127
+ + KP++ + + + ++ + + +P +
Sbjct: 79 VEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARN 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 28.3 bits (63), Expect = 4.1
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 22/86 (25%)
Query: 217 RNRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTL 276
++++ I+Y ++ D +F +++ H + I +L
Sbjct: 55 GKKIESLRAIRYEIS--------PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL 106
Query: 277 IR--------------PDGKKKAYVR 288
P G++ ++
Sbjct: 107 DPPEVSNAKLQYAGWGPKGQQLIFIF 132
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.3 bits (63), Expect = 4.7
Identities = 5/52 (9%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 151 LQKGGKKPLGKNEQGQ----VKKALKSKLKVLKGGHHTRTRKIRTSVRFHRP 198
+ P + + +K +L +++ ++RF
Sbjct: 2001 MNSQDAVPFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAIRFGSV 2052
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 27.6 bits (62), Expect = 5.2
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 247 FIVHLQANKHHIKAAVKKMYDINVAKV 273
F++H Q ++ H A VK I+ AKV
Sbjct: 269 FVIH-QVSRPHTAAFVKSF-GIDPAKV 293
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 27.5 bits (60), Expect = 5.3
Identities = 15/59 (25%), Positives = 19/59 (32%)
Query: 31 KKPEEKKKPAAAGQASGSAGDKPAAAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKAAA 89
K PE D+P AK+D K K KK + A + A K
Sbjct: 254 KLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 27.0 bits (58), Expect = 8.4
Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 4/150 (2%)
Query: 29 TEKKPEEKKKPAAAGQASGSAGDKPA-AAKKDAKKAPEKKAAGDKKPAAAAAKKPADKKA 87
++P + + +PA A A K+A P A+ PA ++
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70
Query: 88 AAAKKPTDKKAGDKKAKAAK---PAQKGVLKKAGAKSTPGVKKNVPKKALPVKKGALKPK 144
+ + + P QK A P + + + L+
Sbjct: 71 RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130
Query: 145 KGVPAKLQKGGKKPLGKNEQGQVKKALKSK 174
+ + A+++ E + + +
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPE 160
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 27.0 bits (60), Expect = 9.3
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Query: 71 DKKPAAAAAKKPADKKAAAAKKPTDKKAGDKKAKAAKPAQKGVLKKAGAKSTPGVKKNVP 130
K + + + ++ + A +K T + ++P
Sbjct: 10 SGVDLGTENLYFQSMKNSGDQDS--RSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIP 67
Query: 131 KKALPVKKGALKPKKG-VPAKLQKGGKKPLGKNEQGQVKKA 170
P + K+G V + + LG GQV K
Sbjct: 68 APPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKC 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.348
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,465,541
Number of extensions: 279198
Number of successful extensions: 863
Number of sequences better than 10.0: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 151
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.5 bits)