RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6374
         (305 letters)



>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score =  108 bits (272), Expect = 1e-30
 Identities = 35/81 (43%), Positives = 54/81 (66%)

Query: 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 281
           ++++IK+P  TE AM  ++  N L F V  +A+K  +  AV++ YD+ V +VNT    DG
Sbjct: 1   SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG 60

Query: 282 KKKAYVRLARDYDALDVANKI 302
           +KKA VRL+ D DA +VA++I
Sbjct: 61  EKKAVVRLSEDDDAQEVASRI 81


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
           [TaxId: 562]}
          Length = 93

 Score = 77.1 bits (190), Expect = 1e-18
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 218 NRMDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 277
                  +++ P  +E A   +E +NT+V  V   A K  IKAAV+K++++ V  VNTL+
Sbjct: 3   REERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLV 62

Query: 278 RP-------------DGKKKAYVRLARDYD 294
                             KKAYV L    +
Sbjct: 63  VKGKVKRHGQRIGRRSDWKKAYVTLKEGQN 92


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 70.5 bits (173), Expect = 3e-16
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 14/86 (16%)

Query: 222 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-- 279
           A+++I  P+ +E A           F VH +A K  IK AV+  + + V KVNTL     
Sbjct: 2   AYDVILAPVLSEKAYAGFA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60

Query: 280 -----------DGKKKAYVRLARDYD 294
                        +KKA V++A    
Sbjct: 61  KKRLGRYLGKRPDRKKAIVQVAPGQK 86


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 93

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 14/85 (16%)

Query: 223 FNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP--- 279
           ++I++ P+ +E A   +E      F V  +A K  IK A+++ + + V  ++T+  P   
Sbjct: 3   YDILQAPVISEKAYSAME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKR 61

Query: 280 ----------DGKKKAYVRLARDYD 294
                     + +KKA VRLA    
Sbjct: 62  KRVGRFIGQRNDRKKAIVRLAEGQS 86


>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
           204285]}
          Length = 162

 Score = 28.2 bits (62), Expect = 0.82
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 266 YDINVAKVNTLIRPDGKKKAYV 287
           Y  N+ +V+  + PDG  K  V
Sbjct: 36  YVFNLTEVDNWMGPDGVVKEKV 57


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 26.0 bits (57), Expect = 6.1
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 178 LKGGHHTRTRKIRTSVRFHRP---RTQRGGAAPKYMRRSVPRRNRMDAFNIIKYPLTTES 234
           ++  H T       ++R H+          A  + +   V      D  NII Y      
Sbjct: 182 IQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQ 241

Query: 235 AMKKIEDNNTLVFIVH 250
           A+ +  +N  +V+  H
Sbjct: 242 ALAQWIENTRMVYEAH 257


>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 24.9 bits (54), Expect = 6.4
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 20/77 (25%)

Query: 166 QVKKALKSKLKVLKGGHHTRTRKIRTSVRFHRPRTQRGGAAPKYMRRSVPRRNRMDAFNI 225
           ++++AL   L+ L        R+   S+ F +P   +    P Y             F+I
Sbjct: 6   ELRQALMPTLEALY-------RQDPESLPFRQPVDPQLLGIPDY-------------FDI 45

Query: 226 IKYPLTTESAMKKIEDN 242
           +K P+   +  +K++  
Sbjct: 46  VKNPMDLSTIKRKLDTG 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,037,602
Number of extensions: 48604
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 20
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.5 bits)