Query psy6375
Match_columns 86
No_of_seqs 114 out of 1018
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:52:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_T 50S ribosomal protein L 100.0 1.5E-42 5.3E-47 222.3 11.2 86 1-86 1-86 (86)
2 1vq8_S 50S ribosomal protein L 100.0 1.4E-40 4.6E-45 212.8 10.1 84 3-86 2-85 (85)
3 3u5e_X 60S ribosomal protein L 100.0 1.1E-39 3.7E-44 225.0 9.7 86 1-86 57-142 (142)
4 4a17_R RPL23A, 60S ribosomal p 100.0 3E-39 1E-43 224.4 10.4 86 1-86 65-150 (150)
5 3iz5_X 60S ribosomal protein L 100.0 3.4E-39 1.2E-43 224.5 10.1 86 1-86 67-152 (152)
6 2zkr_s 60S ribosomal protein L 100.0 1.1E-38 3.7E-43 222.8 9.7 86 1-86 71-156 (156)
7 3bbo_V Ribosomal protein L23; 100.0 7.6E-38 2.6E-42 224.2 4.2 86 1-86 109-194 (198)
8 2zjr_Q 50S ribosomal protein L 100.0 8.4E-36 2.9E-40 193.8 6.2 81 1-83 1-94 (95)
9 3tve_T 50S ribosomal protein L 100.0 7.2E-35 2.5E-39 188.5 6.9 78 2-81 1-91 (92)
10 3r8s_T 50S ribosomal protein L 100.0 9.4E-34 3.2E-38 183.6 8.1 74 2-75 6-92 (93)
11 2dhg_A TRNA selenocysteine ass 92.3 0.6 2.1E-05 27.7 6.4 58 24-82 11-70 (104)
12 3md3_A Nuclear and cytoplasmic 92.0 0.63 2.2E-05 29.0 6.4 55 26-82 4-60 (166)
13 2ywk_A Putative RNA-binding pr 90.8 1.3 4.3E-05 25.7 6.6 56 25-82 19-76 (95)
14 2e44_A Insulin-like growth fac 90.6 1.5 5.2E-05 25.5 6.8 59 23-83 16-74 (96)
15 2do4_A Squamous cell carcinoma 89.0 1.1 3.7E-05 26.4 5.3 57 24-82 19-77 (100)
16 2lxi_A RNA-binding protein 10; 88.8 0.3 1E-05 29.1 2.6 55 26-81 5-62 (91)
17 2hvz_A Splicing factor, argini 88.6 1.2 4.1E-05 26.3 5.3 53 26-82 4-56 (101)
18 3q2s_C Cleavage and polyadenyl 88.5 1.8 6.1E-05 30.1 6.8 58 25-83 71-132 (229)
19 3s7r_A Heterogeneous nuclear r 87.6 2.3 7.7E-05 24.2 5.9 56 24-81 13-71 (87)
20 2d9o_A DNAJ (HSP40) homolog, s 87.5 1.2 4.2E-05 27.4 5.0 46 32-81 27-72 (100)
21 2do0_A HnRNP M, heterogeneous 87.5 1.5 5E-05 26.4 5.3 58 24-83 17-76 (114)
22 3mdf_A Peptidyl-prolyl CIS-tra 87.4 1.3 4.6E-05 25.0 4.8 56 25-82 10-68 (85)
23 1whw_A Hypothetical protein ri 87.1 1.2 4.2E-05 26.0 4.7 56 25-82 11-69 (99)
24 1x4a_A Splicing factor, argini 86.0 1.4 4.7E-05 26.4 4.5 57 25-83 25-81 (109)
25 1x4g_A Nucleolysin TIAR; struc 85.5 2.4 8.3E-05 25.3 5.5 54 25-83 28-81 (109)
26 2cph_A RNA binding motif prote 85.5 1.9 6.4E-05 25.5 4.9 58 24-83 17-78 (107)
27 1ywx_A 30S ribosomal protein S 85.4 0.56 1.9E-05 30.1 2.6 43 11-54 5-50 (102)
28 1owx_A Lupus LA protein, SS-B, 85.4 1.4 4.8E-05 28.6 4.6 55 24-83 18-76 (121)
29 2dnh_A Bruno-like 5, RNA bindi 85.2 2.4 8.2E-05 25.0 5.3 56 25-82 18-75 (105)
30 2cqc_A Arginine/serine-rich sp 85.0 2.7 9.2E-05 24.2 5.4 58 24-83 17-77 (95)
31 3d2w_A TAR DNA-binding protein 85.0 1.1 3.8E-05 26.4 3.7 50 24-77 13-62 (89)
32 4fxv_A ELAV-like protein 1; RN 84.9 2.9 9.9E-05 25.0 5.6 58 24-83 21-81 (99)
33 3beg_B Splicing factor, argini 84.9 2 6.7E-05 26.3 4.9 55 23-83 17-71 (115)
34 1xn9_A 30S ribosomal protein S 84.4 0.7 2.4E-05 29.5 2.7 43 11-54 5-50 (101)
35 2dnq_A RNA-binding protein 4B; 84.2 2.6 9E-05 24.2 5.1 51 26-83 12-62 (90)
36 3md1_A Nuclear and cytoplasmic 84.1 3.6 0.00012 23.0 5.5 56 26-83 5-63 (83)
37 1p27_B RNA-binding protein 8A; 84.0 3.8 0.00013 24.1 5.9 56 25-82 26-84 (106)
38 3p5t_L Cleavage and polyadenyl 83.8 2.3 7.9E-05 24.6 4.7 56 26-82 5-64 (90)
39 1x5p_A Negative elongation fac 83.8 4.5 0.00015 23.6 6.0 54 24-82 15-68 (97)
40 3ulh_A THO complex subunit 4; 83.7 3.8 0.00013 24.1 5.8 55 26-82 33-89 (107)
41 3nmr_A Cugbp ELAV-like family 83.6 3.3 0.00011 25.9 5.7 59 23-83 96-156 (175)
42 2adc_A Polypyrimidine tract-bi 83.5 2.3 8E-05 28.7 5.2 56 25-83 154-209 (229)
43 1wi8_A EIF-4B, eukaryotic tran 83.2 1.1 3.9E-05 26.6 3.2 51 27-80 20-74 (104)
44 2jvr_A Nucleolar protein 3; RN 83.1 2.2 7.6E-05 26.6 4.7 56 25-83 31-87 (111)
45 4a8x_A RNA-binding protein wit 83.0 2.9 9.9E-05 23.6 4.8 57 25-83 7-67 (88)
46 2dis_A Unnamed protein product 83.0 2.5 8.4E-05 25.1 4.7 58 25-83 11-72 (109)
47 2hzc_A Splicing factor U2AF 65 82.8 3.6 0.00012 23.2 5.2 53 25-80 9-70 (87)
48 2err_A Ataxin-2-binding protei 82.7 1.4 4.7E-05 26.8 3.5 57 25-83 32-89 (109)
49 1wf1_A RNA-binding protein RAL 82.6 2 6.8E-05 25.8 4.2 52 25-83 30-82 (110)
50 4f25_A Polyadenylate-binding p 82.6 3 0.0001 25.4 5.1 57 24-82 7-64 (115)
51 2i2y_A Fusion protein consists 82.6 2.4 8.2E-05 26.8 4.7 55 25-83 76-130 (150)
52 2xs2_A Deleted in azoospermia- 82.2 5.6 0.00019 23.2 6.4 55 25-81 12-68 (102)
53 2fy1_A RNA-binding motif prote 82.1 2.4 8.4E-05 26.0 4.5 57 25-83 10-68 (116)
54 3ex7_B RNA-binding protein 8A; 81.8 2.8 9.5E-05 25.6 4.7 56 25-82 25-83 (126)
55 1x4c_A Splicing factor, argini 81.6 2.9 9.8E-05 25.1 4.7 54 24-83 17-70 (108)
56 2cq3_A RNA-binding protein 9; 81.6 2.8 9.6E-05 24.7 4.5 57 25-83 18-75 (103)
57 2dnm_A SRP46 splicing factor; 81.6 4.2 0.00014 23.8 5.4 57 25-83 16-75 (103)
58 1x5s_A Cold-inducible RNA-bind 81.6 3.4 0.00012 24.1 4.9 57 25-83 15-74 (102)
59 2voo_A Lupus LA protein; RNA-b 81.2 4.9 0.00017 27.0 6.2 62 21-84 108-171 (193)
60 2adc_A Polypyrimidine tract-bi 81.1 3.3 0.00011 28.0 5.3 52 26-81 38-90 (229)
61 2dgt_A RNA-binding protein 30; 81.0 3 0.0001 24.0 4.5 51 26-83 14-64 (92)
62 2dgw_A Probable RNA-binding pr 81.0 3.4 0.00011 23.7 4.6 52 25-79 13-66 (91)
63 2kt5_A RNA and export factor-b 81.0 2.8 9.7E-05 25.6 4.5 54 26-81 39-94 (124)
64 1s79_A Lupus LA protein; RRM, 80.9 3 0.0001 25.4 4.5 55 24-80 13-69 (103)
65 2dnz_A Probable RNA-binding pr 80.6 3.8 0.00013 23.6 4.8 55 26-82 9-66 (95)
66 1fxl_A Paraneoplastic encephal 80.5 5.5 0.00019 24.5 5.8 56 25-82 5-63 (167)
67 3s8s_A Histone-lysine N-methyl 80.4 4.5 0.00015 24.7 5.3 58 24-83 8-68 (110)
68 2dgv_A HnRNP M, heterogeneous 80.3 5.4 0.00018 22.7 5.4 56 26-83 12-68 (92)
69 2la4_A Nuclear and cytoplasmic 80.1 4.6 0.00016 23.6 5.1 53 25-82 30-82 (101)
70 2g4b_A Splicing factor U2AF 65 79.9 8.6 0.00029 23.9 7.3 58 24-83 96-156 (172)
71 2cpz_A CUG triplet repeat RNA- 79.4 7 0.00024 23.4 5.9 58 24-83 27-87 (115)
72 3a9j_A Ubiquitin; protein comp 79.2 3.5 0.00012 22.7 4.2 35 24-58 11-45 (76)
73 1x4h_A RNA-binding protein 28; 79.0 3.6 0.00012 24.4 4.4 58 24-83 17-77 (111)
74 2jvo_A Nucleolar protein 3; nu 78.9 2.4 8.3E-05 25.7 3.7 52 25-83 34-85 (108)
75 1x5o_A RNA binding motif, sing 78.9 3.2 0.00011 24.9 4.2 56 25-82 28-85 (114)
76 2cqi_A Nucleolysin TIAR; RNA r 78.9 6.5 0.00022 23.0 5.5 55 25-81 18-73 (103)
77 2rs2_A Musashi-1, RNA-binding 78.8 3.1 0.00011 25.1 4.2 59 24-84 27-88 (109)
78 2cpf_A RNA binding motif prote 78.8 5.5 0.00019 23.0 5.2 58 24-83 7-70 (98)
79 1ndd_A NEDD8, protein (ubiquit 78.7 3.7 0.00013 22.6 4.2 35 24-58 11-45 (76)
80 2g1d_A 30S ribosomal protein S 78.6 0.91 3.1E-05 28.8 1.6 45 11-56 5-53 (98)
81 2f3j_A RNA and export factor b 78.6 3.5 0.00012 27.4 4.7 55 25-81 91-147 (177)
82 1whx_A Hypothetical protein ri 78.5 3.5 0.00012 25.0 4.4 54 25-83 13-66 (111)
83 1qm9_A Polypyrimidine tract-bi 78.5 3.1 0.00011 27.0 4.3 53 25-81 6-59 (198)
84 2d9p_A Polyadenylate-binding p 78.3 3.7 0.00013 24.1 4.3 57 23-82 16-74 (103)
85 3phx_B Ubiquitin-like protein 78.1 4.4 0.00015 22.9 4.5 35 24-58 15-49 (79)
86 1u6f_A Tcubp1, RNA-binding pro 77.9 7.5 0.00026 24.0 5.9 56 25-82 45-103 (139)
87 1wez_A HnRNP H', FTP-3, hetero 77.4 2.1 7E-05 25.9 3.0 53 25-80 18-72 (102)
88 2hgm_A HNRPF protein, heteroge 77.4 2.4 8.4E-05 27.1 3.5 56 26-82 46-103 (126)
89 2ki2_A SS-DNA binding protein 77.2 7.3 0.00025 22.1 5.3 56 25-83 4-62 (90)
90 3n3k_B Ubiquitin; hydrolase, p 77.1 4.2 0.00014 23.1 4.2 35 24-58 14-48 (85)
91 1x5u_A Splicing factor 3B subu 76.9 4.9 0.00017 23.6 4.6 57 25-83 18-77 (105)
92 1sjq_A Polypyrimidine tract-bi 76.6 4.6 0.00016 25.2 4.5 55 24-83 18-72 (105)
93 2bz2_A Negative elongation fac 76.5 7.2 0.00025 24.2 5.5 54 24-82 39-92 (121)
94 2cqd_A RNA-binding region cont 76.2 5.1 0.00018 24.0 4.6 57 24-82 19-78 (116)
95 2dh8_A DAZ-associated protein 76.1 9.4 0.00032 22.3 6.5 52 27-80 21-75 (105)
96 1p1t_A Cleavage stimulation fa 76.0 7.9 0.00027 22.5 5.3 57 24-82 10-69 (104)
97 3k9o_B Ubiquitin, UBB+1; E2-25 75.8 5 0.00017 23.6 4.4 35 24-58 12-46 (96)
98 1why_A Hypothetical protein ri 75.7 6.5 0.00022 22.8 4.9 55 24-83 19-73 (97)
99 4eew_A Large proline-rich prot 75.5 6.5 0.00022 22.7 4.8 36 23-58 27-62 (88)
100 3lqv_A PRE-mRNA branch site pr 75.5 5.6 0.00019 23.8 4.6 57 25-83 11-67 (115)
101 2x1f_A MRNA 3'-END-processing 75.4 6.5 0.00022 22.7 4.8 56 26-83 6-64 (96)
102 1qm9_A Polypyrimidine tract-bi 75.4 4.3 0.00015 26.3 4.3 55 26-83 124-178 (198)
103 2yh0_A Splicing factor U2AF 65 75.4 13 0.00045 23.6 7.2 57 25-83 117-176 (198)
104 3nmr_A Cugbp ELAV-like family 75.2 8.8 0.0003 23.8 5.7 57 25-83 6-67 (175)
105 2jrs_A RNA-binding protein 39; 75.1 7.3 0.00025 23.4 5.1 56 25-82 29-87 (108)
106 2bwf_A Ubiquitin-like protein 75.1 5.9 0.0002 22.0 4.4 35 24-58 14-48 (77)
107 2cq4_A RNA binding motif prote 74.8 7.7 0.00026 23.1 5.2 55 24-80 27-84 (114)
108 3mtn_B UBA80, ubcep1, ubiquiti 74.6 5.2 0.00018 22.6 4.1 35 24-58 14-48 (85)
109 2v94_A RPS24, 30S ribosomal pr 74.5 2.5 8.5E-05 27.2 2.9 44 12-56 14-61 (107)
110 4fbj_B NEDD8; effector-HOST ta 74.3 4.7 0.00016 23.7 4.0 36 23-58 10-45 (88)
111 3n9u_C Cleavage and polyadenyl 74.0 11 0.00039 24.4 6.2 58 24-82 57-118 (156)
112 2dgp_A Bruno-like 4, RNA bindi 73.8 6.6 0.00023 23.0 4.6 57 25-83 16-75 (106)
113 2dzi_A Ubiquitin-like protein 73.7 5.1 0.00017 22.5 3.9 35 24-58 18-52 (81)
114 2dng_A Eukaryotic translation 73.5 4.7 0.00016 23.7 3.8 52 26-80 19-73 (103)
115 4dwf_A HLA-B-associated transc 73.4 8.1 0.00028 22.4 4.9 36 23-58 15-50 (90)
116 2j76_E EIF-4B, EIF4B, eukaryot 73.3 1.1 3.8E-05 26.6 0.9 53 25-80 22-78 (100)
117 4hcn_B Polyubiquitin, ubiquiti 73.1 4.6 0.00016 24.2 3.8 36 23-58 32-67 (98)
118 1wh3_A 59 kDa 2'-5'-oligoadeny 72.8 6 0.0002 22.7 4.1 35 24-58 18-52 (87)
119 1yqb_A Ubiquilin 3; structural 72.2 7.9 0.00027 23.5 4.8 35 24-58 32-66 (100)
120 2ad9_A Polypyrimidine tract-bi 72.1 4.9 0.00017 25.6 3.9 53 25-82 34-86 (119)
121 2cqg_A TDP-43, TAR DNA-binding 72.0 11 0.00038 21.9 5.3 56 24-81 17-75 (103)
122 1sif_A Ubiquitin; hydrophobic 71.7 5.2 0.00018 23.5 3.7 35 24-58 20-54 (88)
123 3vdz_A Ubiquitin-40S ribosomal 71.6 7.3 0.00025 24.0 4.6 36 23-58 45-80 (111)
124 3ucg_A Polyadenylate-binding p 71.6 11 0.00038 21.1 5.8 55 24-80 8-65 (89)
125 2dnn_A RNA-binding protein 12; 71.6 3.9 0.00013 25.3 3.2 52 25-79 19-72 (109)
126 3bs9_A Nucleolysin TIA-1 isofo 71.6 11 0.00038 21.0 5.4 56 26-83 10-68 (87)
127 2yh0_A Splicing factor U2AF 65 71.4 16 0.00056 23.1 6.4 54 24-80 6-68 (198)
128 2ghp_A U4/U6 snRNA-associated 71.2 5.8 0.0002 27.3 4.4 56 26-82 121-178 (292)
129 1fxl_A Paraneoplastic encephal 71.2 13 0.00044 22.7 5.7 57 25-83 91-150 (167)
130 3sde_A Paraspeckle component 1 71.1 8.5 0.00029 26.5 5.2 57 25-83 99-157 (261)
131 1b7f_A Protein (SXL-lethal pro 71.0 9.2 0.00031 23.6 5.0 55 25-81 6-63 (168)
132 2qfj_A FBP-interacting repress 71.0 11 0.00037 24.4 5.5 58 24-83 127-187 (216)
133 1wg1_A KIAA1579 protein, homol 70.9 2.3 7.7E-05 24.6 1.9 52 24-81 7-58 (88)
134 3v6c_B Ubiquitin; structural g 70.8 7.3 0.00025 22.8 4.3 36 23-58 27-62 (91)
135 2cpj_A Non-POU domain-containi 70.8 6.3 0.00022 22.9 4.0 54 25-83 18-71 (99)
136 2dgx_A KIAA0430 protein; RRM d 70.8 7.2 0.00025 22.7 4.2 57 25-83 12-72 (96)
137 1wx7_A Ubiquilin 3; ubiquitin- 70.6 9.2 0.00032 23.2 4.8 35 24-58 27-61 (106)
138 3dbh_I NEDD8; cell cycle, acti 70.6 5.4 0.00018 22.9 3.5 36 23-58 22-57 (88)
139 2hj8_A Interferon-induced 17 k 70.1 8.3 0.00028 22.5 4.4 35 24-58 15-49 (88)
140 2uyz_B Small ubiquitin-related 69.8 11 0.00037 21.2 4.7 35 24-58 14-48 (79)
141 1l3k_A Heterogeneous nuclear r 69.7 10 0.00034 24.1 5.1 55 25-81 107-164 (196)
142 2kk8_A Uncharacterized protein 69.5 9.2 0.00031 22.4 4.5 35 24-58 21-55 (84)
143 2klc_A Ubiquilin-1; ubiquitin- 69.1 11 0.00036 22.9 4.8 35 24-58 35-69 (101)
144 1yx5_B Ubiquitin; proteasome, 68.9 8.1 0.00028 22.9 4.2 35 24-58 11-45 (98)
145 2dha_A FLJ20171 protein; RRM d 68.8 5.3 0.00018 25.3 3.5 51 29-79 30-84 (123)
146 1wex_A Hypothetical protein (r 68.7 6.4 0.00022 24.0 3.8 53 25-82 18-70 (104)
147 2xnq_A Nuclear polyadenylated 68.7 12 0.0004 22.0 4.9 52 25-83 25-77 (97)
148 2ytc_A PRE-mRNA-splicing facto 68.6 12 0.0004 20.9 4.7 55 24-83 14-68 (85)
149 2dnp_A RNA-binding protein 14; 68.6 11 0.00039 21.4 4.7 52 24-82 11-62 (90)
150 2l7r_A Ubiquitin-like protein 68.5 6.5 0.00022 23.4 3.7 35 24-58 28-62 (93)
151 2la6_A RNA-binding protein FUS 68.2 14 0.00047 21.4 5.1 56 24-81 15-81 (99)
152 2cq1_A PTB-like protein L; RRM 68.1 5.5 0.00019 24.2 3.3 53 25-82 18-70 (101)
153 2kd0_A LRR repeats and ubiquit 67.7 7.1 0.00024 22.9 3.7 35 24-58 22-56 (85)
154 1wf0_A TDP-43, TAR DNA-binding 67.4 2.9 9.8E-05 24.0 1.8 49 25-77 8-56 (88)
155 2cq2_A Hypothetical protein LO 66.7 11 0.00038 23.8 4.7 49 30-83 35-83 (114)
156 2dgs_A DAZ-associated protein 66.5 9.1 0.00031 22.2 4.0 54 25-80 13-69 (99)
157 2cqb_A Peptidyl-prolyl CIS-tra 66.3 6.1 0.00021 23.0 3.2 57 24-82 14-73 (102)
158 2kxn_B Transformer-2 protein h 65.8 7.9 0.00027 24.2 3.8 58 24-83 48-108 (129)
159 1h2v_Z 20 kDa nuclear CAP bind 65.6 17 0.00057 22.9 5.4 56 26-83 43-101 (156)
160 1wx8_A Riken cDNA 4931431F19; 65.0 7.2 0.00025 23.0 3.4 35 24-58 27-61 (96)
161 2e5h_A Zinc finger CCHC-type a 64.8 8.9 0.0003 21.8 3.7 57 24-82 18-77 (94)
162 1we7_A SF3A1 protein; structur 64.7 4.6 0.00016 25.1 2.5 35 24-58 46-80 (115)
163 2dgo_A Cytotoxic granule-assoc 64.3 20 0.00067 21.2 5.4 56 26-83 19-77 (115)
164 2dgu_A Heterogeneous nuclear r 64.0 16 0.00054 21.3 4.8 52 24-82 13-64 (103)
165 2lkz_A RNA-binding protein 5; 63.8 6.5 0.00022 23.6 3.0 58 25-82 12-72 (95)
166 2cqh_A IGF-II mRNA-binding pro 63.4 11 0.00036 21.6 3.8 55 24-83 10-64 (93)
167 2cq0_A Eukaryotic translation 62.9 7.7 0.00026 22.7 3.2 56 26-83 19-77 (103)
168 3r27_A HnRNP L, heterogeneous 62.9 16 0.00054 22.5 4.8 48 29-81 28-75 (100)
169 2e5i_A Heterogeneous nuclear r 62.9 17 0.00059 23.0 5.1 50 30-83 33-82 (124)
170 3smz_A Protein raver-1, ribonu 62.9 11 0.00037 25.8 4.4 54 24-83 24-77 (284)
171 2dzm_A FAS-associated factor 1 62.8 9.8 0.00033 23.6 3.8 40 23-62 18-57 (100)
172 1x4e_A RNA binding motif, sing 62.8 6.9 0.00024 22.0 2.9 55 25-81 8-65 (85)
173 2hgl_A HNRPF protein, heteroge 62.7 7.6 0.00026 24.9 3.4 52 26-78 48-103 (136)
174 1wy8_A NP95-like ring finger p 62.5 14 0.00046 21.3 4.2 35 24-58 19-54 (89)
175 2khc_A Testis-specific RNP-typ 62.5 11 0.00037 22.5 3.9 56 26-83 44-102 (118)
176 2faz_A Ubiquitin-like containi 62.3 14 0.00048 20.6 4.2 33 26-58 16-49 (78)
177 1v5o_A 1700011N24RIK protein; 62.3 10 0.00035 22.9 3.8 35 24-58 22-56 (102)
178 2ku7_A MLL1 PHD3-CYP33 RRM chi 62.2 16 0.00056 22.1 4.8 56 25-82 66-124 (140)
179 1j8c_A Ubiquitin-like protein 62.1 16 0.00056 23.1 4.9 35 24-58 42-76 (125)
180 1ufw_A Synaptojanin 2; RNP dom 61.9 12 0.00041 23.5 4.1 38 37-81 39-76 (95)
181 2jwn_A Embryonic polyadenylate 61.6 23 0.0008 21.2 6.6 57 22-80 36-95 (124)
182 1x4f_A Matrin 3; structural ge 61.6 5.3 0.00018 25.1 2.4 53 26-83 29-82 (112)
183 2ojr_A Ubiquitin; lanthide-bin 61.4 14 0.00048 22.6 4.3 35 24-58 46-80 (111)
184 3ns6_A Eukaryotic translation 61.4 6.2 0.00021 23.3 2.6 48 33-82 23-73 (100)
185 3u5c_Y RP50, 40S ribosomal pro 61.0 5.7 0.0002 26.6 2.6 38 16-54 14-55 (135)
186 1oo0_B CG8781-PA, drosophila Y 61.0 18 0.0006 21.3 4.6 56 25-82 29-87 (110)
187 2hgn_A Heterogeneous nuclear r 60.5 2.4 8.2E-05 27.5 0.6 50 26-78 50-101 (139)
188 2qfj_A FBP-interacting repress 60.4 19 0.00064 23.2 5.1 59 23-83 29-90 (216)
189 2nlw_A Eukaryotic translation 60.2 18 0.00061 21.3 4.6 56 25-83 18-81 (105)
190 2kan_A Uncharacterized protein 60.2 13 0.00045 22.2 4.0 35 24-58 25-59 (94)
191 1x4d_A Matrin 3; structural ge 60.2 5.2 0.00018 24.6 2.1 53 25-82 18-71 (102)
192 2xzm_P RPS24E; ribosome, trans 60.0 6.9 0.00023 26.6 2.8 39 17-56 13-55 (149)
193 1iqt_A AUF1, heterogeneous nuc 59.7 11 0.00039 20.4 3.4 51 29-81 6-59 (75)
194 3pgw_A U1-A; protein-RNA compl 59.6 25 0.00084 23.9 5.8 59 24-82 11-71 (282)
195 3m62_B UV excision repair prot 59.6 8.4 0.00029 23.6 3.0 36 23-58 11-46 (106)
196 4f02_A Polyadenylate-binding p 59.5 18 0.00062 23.9 4.9 58 24-83 105-163 (213)
197 2kdi_A Ubiquitin, vacuolar pro 59.5 15 0.0005 22.8 4.2 35 24-58 20-54 (114)
198 2ghp_A U4/U6 snRNA-associated 58.6 31 0.0011 23.5 6.2 55 24-80 43-98 (292)
199 1wjn_A Tubulin-folding protein 58.6 7.7 0.00026 23.2 2.7 52 24-75 23-74 (97)
200 4f02_A Polyadenylate-binding p 58.5 24 0.00081 23.3 5.4 56 25-82 18-76 (213)
201 3pgw_S U1-70K; protein-RNA com 58.4 19 0.00063 27.4 5.3 57 24-82 104-163 (437)
202 1v86_A DNA segment, CHR 7, way 58.0 14 0.00047 22.1 3.8 34 24-57 27-60 (95)
203 2cpi_A CCR4-NOT transcription 57.8 13 0.00043 22.3 3.6 62 19-82 12-82 (111)
204 2kn4_A Immunoglobulin G-bindin 57.7 16 0.00055 22.8 4.2 56 25-82 73-131 (158)
205 2e5j_A Methenyltetrahydrofolat 57.3 25 0.00086 20.2 5.6 55 25-83 22-76 (97)
206 1x4b_A Heterogeneous nuclear r 56.8 14 0.0005 21.9 3.8 53 24-78 29-84 (116)
207 2lea_A Serine/arginine-rich sp 56.6 9.4 0.00032 24.0 3.0 56 24-81 49-107 (135)
208 1wyw_B Ubiquitin-like protein 56.5 22 0.00076 21.1 4.6 35 24-58 32-66 (97)
209 1l3k_A Heterogeneous nuclear r 56.0 29 0.001 21.8 5.4 56 24-81 15-73 (196)
210 1wxv_A BAG-family molecular ch 55.8 18 0.00061 21.1 4.0 35 24-58 17-56 (92)
211 3tyt_A Heterogeneous nuclear r 55.6 18 0.00061 24.3 4.4 54 26-83 8-62 (205)
212 4dbg_A Ranbp-type and C3HC4-ty 54.1 22 0.00075 22.4 4.4 34 24-57 37-70 (105)
213 3zzy_A Polypyrimidine tract-bi 53.6 23 0.00078 22.8 4.5 48 32-82 38-85 (130)
214 3b08_A Polyubiquitin-C, ubiqui 53.5 20 0.0007 22.2 4.2 35 24-58 11-45 (152)
215 1we6_A Splicing factor, putati 53.1 14 0.00048 22.6 3.3 35 24-58 41-76 (111)
216 3rt3_B Ubiquitin-like protein 52.8 23 0.0008 22.5 4.5 35 24-58 92-126 (159)
217 2krb_A Eukaryotic translation 52.5 17 0.00057 20.2 3.3 45 35-82 20-66 (81)
218 1nu4_A U1A RNA binding domain; 52.2 4.9 0.00017 23.2 1.0 56 25-82 11-70 (97)
219 2e5g_A U6 snRNA-specific termi 50.8 28 0.00096 19.8 4.3 51 24-78 10-60 (94)
220 1v5t_A 8430435I17RIK protein; 50.6 9.8 0.00034 22.5 2.2 35 24-58 17-52 (90)
221 3b08_A Polyubiquitin-C, ubiqui 50.2 29 0.001 21.4 4.6 35 24-58 87-121 (152)
222 2a3j_A U1 small nuclear ribonu 50.1 19 0.00066 22.6 3.7 56 25-83 32-92 (127)
223 2dnr_A Synaptojanin-1; RRM dom 49.9 17 0.00057 22.6 3.2 38 37-81 30-67 (91)
224 2kj6_A Tubulin folding cofacto 48.8 31 0.001 21.0 4.3 36 24-59 27-62 (97)
225 1uaw_A Mouse-musashi-1; RNP-ty 48.7 30 0.001 18.6 4.4 57 26-84 4-63 (77)
226 2mss_A Protein (musashi1); RNA 48.7 25 0.00087 18.9 3.7 51 26-78 3-56 (75)
227 1uh6_A Ubiquitin-like 5; beta- 47.5 25 0.00085 21.9 3.8 36 24-59 39-74 (100)
228 2pe8_A Splicing factor 45; RRM 47.2 41 0.0014 20.2 4.7 47 35-83 26-76 (105)
229 2g4b_A Splicing factor U2AF 65 47.2 38 0.0013 20.8 4.8 54 24-80 6-68 (172)
230 2kjr_A CG11242; UBL, ubiquitin 47.1 33 0.0011 20.7 4.3 47 25-73 29-75 (95)
231 1rk8_A CG8781-PA, CG8781-PA pr 46.9 53 0.0018 20.8 5.8 56 25-82 75-133 (165)
232 2db1_A Heterogeneous nuclear r 46.7 18 0.00061 22.0 3.0 51 27-78 22-76 (118)
233 3zzp_A TS9, ribosomal protein 46.5 29 0.00098 20.6 3.8 27 21-47 41-69 (77)
234 2wyq_A HHR23A, UV excision rep 46.5 37 0.0013 19.0 4.5 35 24-58 16-53 (85)
235 1wju_A NEDD8 ultimate buster-1 46.2 24 0.00082 22.0 3.6 36 23-58 29-64 (100)
236 2cpd_A Apobec-1 stimulating pr 45.9 41 0.0014 19.2 4.7 54 25-83 18-71 (99)
237 3rt3_B Ubiquitin-like protein 45.7 35 0.0012 21.6 4.5 34 24-57 13-46 (159)
238 3u30_A Ubiquitin, linear DI-ub 45.6 33 0.0011 22.2 4.4 35 24-58 31-65 (172)
239 2cjk_A Nuclear polyadenylated 45.6 47 0.0016 20.2 5.0 54 24-79 89-145 (167)
240 2daj_A KIAA0977 protein, COBL- 45.4 8.1 0.00028 24.3 1.2 51 8-58 2-55 (91)
241 3b1l_X E3 ubiquitin-protein li 51.0 4.5 0.00015 22.6 0.0 35 24-58 11-45 (76)
242 1wg5_A Heterogeneous nuclear r 44.8 16 0.00054 21.6 2.5 54 26-80 19-74 (104)
243 3plu_A Ubiquitin-like modifier 43.8 47 0.0016 20.5 4.6 36 23-58 31-66 (93)
244 1wf9_A NPL4 family protein; be 43.5 32 0.0011 20.9 3.9 34 23-56 16-50 (107)
245 2m2b_A RNA-binding protein 10; 43.1 14 0.00047 22.8 2.1 58 25-83 26-86 (131)
246 3m63_B Ubiquitin domain-contai 43.0 6.6 0.00023 24.0 0.5 36 23-58 37-72 (101)
247 1wgg_A Ubiquitin carboxyl-term 42.9 32 0.0011 20.5 3.7 35 24-58 17-52 (96)
248 2cpy_A RNA-binding protein 12; 42.3 13 0.00045 22.3 1.9 52 26-78 19-72 (114)
249 3tyt_A Heterogeneous nuclear r 42.2 74 0.0025 21.1 6.6 59 25-83 126-185 (205)
250 2daf_A FLJ35834 protein; hypot 41.1 41 0.0014 21.8 4.2 37 22-58 25-61 (118)
251 2dn9_A DNAJ homolog subfamily 41.1 18 0.0006 20.6 2.2 20 28-47 13-32 (79)
252 2ctp_A DNAJ homolog subfamily 41.0 18 0.00061 20.6 2.2 19 29-47 14-32 (78)
253 2fc8_A NCL protein; structure 40.9 21 0.00073 20.5 2.6 54 24-82 17-73 (102)
254 1ttn_A DC-UBP, dendritic cell- 40.9 27 0.00091 21.1 3.1 35 24-58 34-68 (106)
255 3smz_A Protein raver-1, ribonu 40.6 74 0.0025 21.5 5.7 56 25-82 98-156 (284)
256 3l0w_B Monoubiquitinated proli 40.3 36 0.0012 22.5 4.0 35 24-58 11-45 (169)
257 3v4m_A Splicing factor U2AF 65 40.0 34 0.0012 20.5 3.6 47 35-83 28-79 (105)
258 1hdj_A Human HSP40, HDJ-1; mol 39.9 19 0.00065 20.4 2.2 19 29-47 10-28 (77)
259 3pgw_A U1-A; protein-RNA compl 39.6 73 0.0025 21.5 5.6 55 25-83 210-264 (282)
260 2lmi_A GRSF-1, G-rich sequence 39.4 11 0.00037 22.4 1.1 53 25-78 14-70 (107)
261 1uel_A HHR23B, UV excision rep 39.3 44 0.0015 19.6 3.9 35 24-58 11-48 (95)
262 1v2y_A 3300001G02RIK protein; 39.0 17 0.00058 22.7 2.0 30 23-52 17-46 (105)
263 1v6e_A Cytoskeleton-associated 38.8 35 0.0012 20.1 3.4 35 25-59 20-54 (95)
264 2fc9_A NCL protein; structure 38.8 23 0.00077 20.4 2.5 53 25-82 18-72 (101)
265 2och_A Hypothetical protein DN 38.5 21 0.00071 20.1 2.2 19 28-46 14-32 (73)
266 2ek1_A RNA-binding protein 12; 38.3 35 0.0012 19.2 3.3 56 25-82 18-76 (95)
267 2ej7_A HCG3 gene; HCG3 protein 38.2 21 0.00071 20.5 2.2 20 28-47 15-34 (82)
268 2cug_A Mkiaa0962 protein; DNAJ 37.5 21 0.00073 20.9 2.2 19 28-46 23-41 (88)
269 2cpe_A RNA-binding protein EWS 37.3 55 0.0019 19.0 4.2 56 25-82 18-84 (113)
270 2yua_A Williams-beuren syndrom 37.1 21 0.00073 21.4 2.2 20 28-47 23-42 (99)
271 2kvi_A Nuclear polyadenylated 36.2 57 0.0019 18.6 4.0 51 26-83 14-65 (96)
272 2ctr_A DNAJ homolog subfamily 36.2 23 0.00078 20.8 2.2 19 29-47 14-32 (88)
273 1q1v_A DEK protein; winged-hel 36.1 25 0.00085 20.6 2.3 19 33-51 32-51 (70)
274 1wjz_A 1700030A21RIK protein; 36.1 21 0.0007 21.0 2.0 20 28-47 22-41 (94)
275 1t0y_A Tubulin folding cofacto 36.1 52 0.0018 20.4 4.1 35 25-59 19-53 (122)
276 2o37_A Protein SIS1; HSP40, J- 35.5 24 0.00081 20.9 2.2 19 28-46 14-32 (92)
277 2ys8_A RAB-related GTP-binding 34.7 25 0.00085 20.8 2.2 20 27-46 32-51 (90)
278 3q3f_A Ribonuclease/ubiquitin 34.3 41 0.0014 23.0 3.5 35 24-58 116-150 (189)
279 2guz_B Mitochondrial import in 33.7 22 0.00076 20.4 1.8 16 34-49 19-34 (65)
280 4b6w_A Tubulin-specific chaper 33.3 75 0.0026 18.6 4.3 36 24-59 15-50 (86)
281 2lgw_A DNAJ homolog subfamily 32.9 25 0.00085 21.3 2.0 20 28-47 8-27 (99)
282 3ue2_A Poly(U)-binding-splicin 32.2 48 0.0017 20.5 3.4 46 36-83 39-91 (118)
283 2ctw_A DNAJ homolog subfamily 32.1 28 0.00096 21.3 2.2 20 28-47 23-42 (109)
284 1wgd_A Homocysteine-responsive 31.3 53 0.0018 19.0 3.3 34 25-58 21-56 (93)
285 3u30_A Ubiquitin, linear DI-ub 31.1 64 0.0022 20.8 4.0 36 23-58 106-141 (172)
286 2dmx_A DNAJ homolog subfamily 30.9 21 0.0007 21.1 1.4 20 28-47 15-34 (92)
287 1cqm_A Ribosomal protein S6; a 30.4 93 0.0032 18.8 4.8 33 25-57 5-43 (101)
288 2ctq_A DNAJ homolog subfamily 30.4 30 0.001 21.2 2.2 20 28-47 26-45 (112)
289 1bq0_A DNAJ, HSP40; chaperone, 30.3 30 0.001 20.8 2.1 20 28-47 9-28 (103)
290 1wel_A RNA-binding protein 12; 30.0 45 0.0015 20.1 2.9 52 25-78 28-82 (124)
291 2cqp_A RNA-binding protein 12; 29.9 59 0.002 18.3 3.3 56 26-83 19-77 (98)
292 1fje_B Nucleolin RBD12, protei 29.8 22 0.00074 22.2 1.4 53 25-80 16-71 (175)
293 1cl8_A Protein (endonuclease); 29.2 41 0.0014 24.8 2.9 55 18-72 44-112 (276)
294 2lxa_A Ubiquitin-like protein 29.0 42 0.0014 19.9 2.6 35 24-58 12-49 (87)
295 3hvm_A Agmatine deiminase; hyd 28.9 36 0.0012 25.4 2.7 20 31-50 165-184 (330)
296 3u5e_m 60S ribosomal protein L 28.4 12 0.00042 23.5 0.0 34 24-57 11-44 (128)
297 1sfu_A 34L protein; protein/Z- 28.2 34 0.0012 20.5 2.0 21 65-85 19-41 (75)
298 2ld7_A Histone deacetylase com 27.8 41 0.0014 20.9 2.4 22 28-49 41-62 (94)
299 2diu_A KIAA0430 protein; struc 27.4 1.1E+02 0.0036 19.0 4.3 51 26-83 13-66 (96)
300 3shq_A UBLCP1; phosphatase, hy 27.1 61 0.0021 23.8 3.6 35 24-58 15-49 (320)
301 4ep4_A Crossover junction endo 26.6 46 0.0016 22.4 2.7 19 32-50 118-136 (166)
302 2div_A TRNA selenocysteine ass 26.6 92 0.0031 17.5 5.2 56 25-82 12-71 (99)
303 1sjr_A Polypyrimidine tract-bi 26.3 1.5E+02 0.005 19.8 5.4 52 29-83 53-104 (164)
304 2j8a_A Histone-lysine N-methyl 26.2 1.4E+02 0.0049 19.6 7.8 47 24-72 4-57 (136)
305 3h7c_X Agmatine deiminase; str 26.0 44 0.0015 25.5 2.7 20 31-50 187-206 (383)
306 2dnl_A Cytoplasmic polyadenyla 25.8 33 0.0011 20.4 1.7 55 23-82 9-71 (114)
307 2guz_A Mitochondrial import in 25.7 46 0.0016 18.8 2.2 18 30-47 22-40 (71)
308 1iur_A KIAA0730 protein; DNAJ 25.4 27 0.00091 20.9 1.2 17 30-46 24-40 (88)
309 1x5t_A Splicing factor 3B subu 24.8 95 0.0032 17.3 3.6 55 25-81 8-66 (96)
310 4ajy_B Transcription elongatio 24.7 1.3E+02 0.0045 19.2 4.5 35 24-58 12-46 (118)
311 2l9w_A U4/U6 snRNA-associated- 24.4 51 0.0017 21.5 2.4 57 24-80 22-79 (117)
312 1hjr_A Holliday junction resol 24.1 54 0.0018 21.7 2.6 18 33-50 115-132 (158)
313 1g62_A Ribosome anti-associati 24.0 76 0.0026 22.6 3.5 33 24-58 155-187 (224)
314 1l9l_A Granulysin; saposin fol 23.8 49 0.0017 19.2 2.1 18 32-49 19-36 (74)
315 2cxc_A NUSA; transcription ter 23.6 1.4E+02 0.0049 19.5 4.6 30 46-76 86-115 (144)
316 1faf_A Large T antigen; J doma 23.2 53 0.0018 19.0 2.2 18 29-46 18-37 (79)
317 2kzr_A Ubiquitin thioesterase 23.2 64 0.0022 18.5 2.6 33 24-56 10-43 (86)
318 3hvz_A Uncharacterized protein 23.1 49 0.0017 19.5 2.1 23 59-84 12-34 (78)
319 3iz6_U 40S ribosomal protein S 23.0 34 0.0012 22.8 1.4 35 17-52 20-59 (138)
320 1x1m_A Ubiquitin-like protein 23.0 90 0.0031 18.7 3.4 35 24-58 26-72 (107)
321 4a20_A Ubiquitin-like protein 22.8 1.2E+02 0.004 18.3 3.8 35 24-58 30-67 (98)
322 2kyz_A Heavy metal binding pro 22.7 84 0.0029 16.0 2.9 32 36-73 16-47 (67)
323 2dit_A HIV TAT specific factor 21.9 1.1E+02 0.0038 17.9 3.6 44 36-83 40-84 (112)
324 3apq_A DNAJ homolog subfamily 21.4 55 0.0019 21.3 2.2 17 30-46 10-26 (210)
325 3u5c_f 40S ribosomal protein S 21.2 20 0.00069 23.7 0.0 35 24-58 11-45 (152)
326 1zbr_A AAQ65385, conserved hyp 21.0 60 0.0021 24.3 2.6 20 32-51 172-191 (349)
327 2l6l_A DNAJ homolog subfamily 20.8 58 0.002 20.9 2.2 19 28-46 16-34 (155)
328 3dxs_X Copper-transporting ATP 20.8 1E+02 0.0035 16.1 3.4 33 36-73 17-49 (74)
329 2j5a_A 30S ribosomal protein S 20.7 1.1E+02 0.0038 18.8 3.5 34 24-57 10-49 (110)
330 3u1l_A PRE-mRNA-splicing facto 20.5 76 0.0026 22.4 2.9 42 35-81 156-197 (240)
331 1g61_A EIF-6, translation init 20.3 91 0.0031 22.1 3.3 33 24-58 158-190 (228)
No 1
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-42 Score=222.28 Aligned_cols=86 Identities=47% Similarity=0.791 Sum_probs=82.9
Q ss_pred CCccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 1 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 1 m~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
||++++|++|++||||+.++|++|+|+|.|+++|||+|||+|||++|||+|.+|||+++|+|||||||+|++|++|+|+|
T Consensus 1 md~~~iIk~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp --CCCCEEECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred CChHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 89999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q psy6375 81 NKIGII 86 (86)
Q Consensus 81 ~~~g~~ 86 (86)
++||++
T Consensus 81 ~kigi~ 86 (86)
T 3j21_T 81 ARLGLF 86 (86)
T ss_dssp HHSSCC
T ss_pred HhhccC
Confidence 999986
No 2
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=100.00 E-value=1.4e-40 Score=212.80 Aligned_cols=84 Identities=43% Similarity=0.623 Sum_probs=79.4
Q ss_pred ccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 3 AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 3 ~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
++++|++|++||||+.++|++|+|+|.|+++|||+|||+|||++|||+|.+|||+++++|||||||+|++|++|+|+|++
T Consensus 2 ~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHTT
T ss_pred CcceeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHHh
Confidence 57899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q psy6375 83 IGII 86 (86)
Q Consensus 83 ~g~~ 86 (86)
||++
T Consensus 82 ig~~ 85 (85)
T 1vq8_S 82 IGVF 85 (85)
T ss_dssp C---
T ss_pred hCCC
Confidence 9986
No 3
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=100.00 E-value=1.1e-39 Score=224.99 Aligned_cols=86 Identities=60% Similarity=1.003 Sum_probs=84.5
Q ss_pred CCccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 1 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 1 m~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
||+|+||++|++||||+.++|++|+|+|.||++|||.|||+|||++|||+|.+|||+++++|||||||+|++|++|+|+|
T Consensus 57 ld~~~IIk~PliTEKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 57 LDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp TCHHHHEEEECCCHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHH
T ss_pred CCHHHhhhcCCcCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHH
Confidence 78999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q psy6375 81 NKIGII 86 (86)
Q Consensus 81 ~~~g~~ 86 (86)
++||+|
T Consensus 137 nkigii 142 (142)
T 3u5e_X 137 NRIGYI 142 (142)
T ss_dssp HHHTCC
T ss_pred HhhccC
Confidence 999996
No 4
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=100.00 E-value=3e-39 Score=224.40 Aligned_cols=86 Identities=55% Similarity=0.829 Sum_probs=84.6
Q ss_pred CCccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 1 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 1 m~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
||+|+||++|++||||+.++|++|+|+|.||++|||+|||+|||++|||+|.+|||+++++|||||||+|++|++|+|+|
T Consensus 65 ld~y~IIk~PliTEKa~~~~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 65 LDNHSVVKTPLTTEKAMKKMEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp CCHHHHEEEECCSHHHHHHHHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHH
T ss_pred CCHHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHH
Confidence 78999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q psy6375 81 NKIGII 86 (86)
Q Consensus 81 ~~~g~~ 86 (86)
++||+|
T Consensus 145 nkiGii 150 (150)
T 4a17_R 145 NKIGLI 150 (150)
T ss_dssp HHHTCC
T ss_pred HhhccC
Confidence 999996
No 5
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=100.00 E-value=3.4e-39 Score=224.53 Aligned_cols=86 Identities=81% Similarity=1.170 Sum_probs=84.6
Q ss_pred CCccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 1 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 1 m~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
||+|+||++|++||||+.++|++|+|+|.||++|||.|||+|||++|||+|.+|||+++++|||||||+|++|++|+|+|
T Consensus 67 md~~~IIk~PliTEKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 67 LDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp CCCCCSEEEECCSHHHHHHHHHHSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred CcHHHHHhhCCcCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHH
Confidence 79999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q psy6375 81 NKIGII 86 (86)
Q Consensus 81 ~~~g~~ 86 (86)
++||+|
T Consensus 147 nkiGii 152 (152)
T 3iz5_X 147 NKIGII 152 (152)
T ss_dssp GGGCCC
T ss_pred HhhcCC
Confidence 999996
No 6
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.1e-38 Score=222.80 Aligned_cols=86 Identities=84% Similarity=1.200 Sum_probs=77.4
Q ss_pred CCccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 1 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 1 m~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
||+++||++|++||||+.++|++|+|+|.||++|||+|||+|||++|||+|.+|||+++++|||||||+|++|++|||+|
T Consensus 71 md~~~iIk~PliTEKa~~~~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 71 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp -----CEEEECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHH
T ss_pred CCHHHhHhcccccHHHHHHHHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHH
Confidence 78999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q psy6375 81 NKIGII 86 (86)
Q Consensus 81 ~~~g~~ 86 (86)
++||+|
T Consensus 151 ~kiGii 156 (156)
T 2zkr_s 151 NKIGII 156 (156)
T ss_dssp HHC---
T ss_pred HhccCC
Confidence 999986
No 7
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=7.6e-38 Score=224.16 Aligned_cols=86 Identities=47% Similarity=0.860 Sum_probs=83.7
Q ss_pred CCccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 1 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 1 m~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
||+++||++|++|||++.++|++|+|+|.||++|||.|||+|||++|||+|.+|||+++++|||||||+|++|++|||+|
T Consensus 109 Md~ydIIk~PvITEKAmkliE~nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~gg~KKAyVtLaeG~~AID~a 188 (198)
T 3bbo_V 109 LDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELA 188 (198)
T ss_dssp -CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETTTEEECCEEECTTTCTTTHH
T ss_pred CCHhheeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCeEEEEEEeCCCCchHHHH
Confidence 78999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q psy6375 81 NKIGII 86 (86)
Q Consensus 81 ~~~g~~ 86 (86)
++||++
T Consensus 189 nKIGii 194 (198)
T 3bbo_V 189 KKIGIF 194 (198)
T ss_dssp HHCCCC
T ss_pred Hhcccc
Confidence 999986
No 8
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=100.00 E-value=8.4e-36 Score=193.83 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=75.8
Q ss_pred CCccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-------------CeeEEE
Q psy6375 1 MDAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-------------GKKKAY 67 (86)
Q Consensus 1 m~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-------------~~KKA~ 67 (86)
||++++|++|++||||+.++|+ |+|+|.|+++|||+|||+|||++|||+|.+|||+++++ +|||||
T Consensus 1 m~~~~iI~~PviTEKs~~~~e~-n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAi 79 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMER-GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAI 79 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTT-TCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEE
T ss_pred CChHhceeccccCHHHHHHHHC-CEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEE
Confidence 8999999999999999999997 67999999999999999999999999999999999885 799999
Q ss_pred EEcCCCCcHHHHHHhh
Q psy6375 68 VRLARDYDALDVANKI 83 (86)
Q Consensus 68 VtL~~g~~a~d~a~~~ 83 (86)
|+|++|++ ||+++.+
T Consensus 80 VtL~~g~~-id~~~~~ 94 (95)
T 2zjr_Q 80 VRLAEGQS-IEALAGQ 94 (95)
T ss_dssp EECCSSCC-CSSTTTC
T ss_pred EEeCCCCe-eecccCC
Confidence 99999999 9998754
No 9
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=100.00 E-value=7.2e-35 Score=188.50 Aligned_cols=78 Identities=32% Similarity=0.477 Sum_probs=73.6
Q ss_pred CccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-------------CCeeEEEE
Q psy6375 2 DAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-------------DGKKKAYV 68 (86)
Q Consensus 2 ~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-------------~~~KKA~V 68 (86)
|++++|++|++||||+.++|+ |+|+|.|+++|||+|||+|||++|||+|.+|||++++ +|||||||
T Consensus 1 ~~~~iI~~P~iTEKa~~~~e~-n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~V 79 (92)
T 3tve_T 1 TAYDVILAPVLSEKAYAGFAE-GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIV 79 (92)
T ss_dssp CHHHHEEEECCSHHHHTTTTT-TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEE
T ss_pred ChhheecccccCHHHHHHhhC-CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEE
Confidence 678999999999999999998 9999999999999999999999999999999999988 58999999
Q ss_pred EcCCCCcHHHHHH
Q psy6375 69 RLARDYDALDVAN 81 (86)
Q Consensus 69 tL~~g~~a~d~a~ 81 (86)
+|++|++ ||+++
T Consensus 80 tL~~g~~-Id~f~ 91 (92)
T 3tve_T 80 QVAPGQK-IEALE 91 (92)
T ss_dssp EECTTCC-CTTTC
T ss_pred EcCCCCc-ccCCC
Confidence 9999954 88764
No 10
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=100.00 E-value=9.4e-34 Score=183.57 Aligned_cols=74 Identities=36% Similarity=0.534 Sum_probs=70.9
Q ss_pred CccccccccccchhhhhhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-------------CCeeEEEE
Q psy6375 2 DAFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-------------DGKKKAYV 68 (86)
Q Consensus 2 ~~~~vi~~P~~TEKs~~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-------------~~~KKA~V 68 (86)
+++++|++|++||||+.++|++|+|+|.||++|||+|||+|||++|||+|.+|||++++ +|||||||
T Consensus 6 ~~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKAiV 85 (93)
T 3r8s_T 6 RLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYV 85 (93)
T ss_dssp HHHHHEEEECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSSSCCBCCCEEEEEE
T ss_pred hHHhhhhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCCccccCCCcEEEEE
Confidence 47899999999999999999889999999999999999999999999999999999987 58999999
Q ss_pred EcCCCCc
Q psy6375 69 RLARDYD 75 (86)
Q Consensus 69 tL~~g~~ 75 (86)
+|++|++
T Consensus 86 tL~~g~~ 92 (93)
T 3r8s_T 86 TLKEGQN 92 (93)
T ss_dssp ECCSCCC
T ss_pred EcCCcCC
Confidence 9999986
No 11
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.33 E-value=0.6 Score=27.70 Aligned_cols=58 Identities=9% Similarity=0.151 Sum_probs=43.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~K--KA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..+|++.++..|| .|.+|.....+.|.. =|+|++....+|......
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 4566677899999999999999788 467887776544432 499999987776655443
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=91.96 E-value=0.63 Score=28.97 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=41.3
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
|+-..+.+++..+|++.++. || +|.+|.....+.|. --|+|++....+|......
T Consensus 4 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 60 (166)
T 3md3_A 4 YVGNLDKAITEDILKQYFQV-GG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 60 (166)
T ss_dssp EEEEEETTCCHHHHHHHHGG-GS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHH
T ss_pred EECCCCCcCCHHHHHHHHHh-cC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHH
Confidence 55667899999999999986 67 68888887665443 3499999988776665543
No 13
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=90.78 E-value=1.3 Score=25.71 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=41.3
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+.|. --|+|++....+|......
T Consensus 19 l~v~nlp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 19 VFVGNLEARVREEILYELFLQ-AG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp EEEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 455567889999999999987 66 67788777655442 3599999988776655543
No 14
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.55 E-value=1.5 Score=25.45 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=40.5
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
..-|+-.++.+++..++++.++. || +|.+|+.+.....-.+|+|++....+|......+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l 74 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQ-YG-VVESCEQVNTDSETAVVNVTYSSKDQARQALDKL 74 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHH-HS-CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHh-cC-CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHh
Confidence 35778888999999999999986 66 4667743332222223999999877665554433
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.97 E-value=1.1 Score=26.40 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=42.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+.|. --|+|++....+|......
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKA-HG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 4555667889999999999987 66 57788877655443 3599999987776655544
No 16
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=88.76 E-value=0.3 Score=29.05 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=39.8
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 81 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~--KKA~VtL~~g~~a~d~a~ 81 (86)
|+--.+.++|..+|++.++. ||..|.+|+.+.-+. |. -=|+|++....+|.....
T Consensus 5 ~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp EEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 34456789999999999987 788888888765332 21 139999998777665543
No 17
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=88.60 E-value=1.2 Score=26.26 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=38.1
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
|+-.++.+++..++++.++. || +|.+|.....+.| -|+|++....+|......
T Consensus 4 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 4 YVGNLGTGAGKGELERAFSY-YG-PLRTVWIARNPPG--FAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp EEECCCSSCSHHHHHHHHHH-HC-CCSEEEEESSSSS--EEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCC--EEEEEECCHHHHHHHHHH
Confidence 44456789999999999987 56 5677776554345 599999887766555443
No 18
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=88.47 E-value=1.8 Score=30.07 Aligned_cols=58 Identities=9% Similarity=0.181 Sum_probs=43.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCC-ceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDI-NVAKVNTLIRP-DGKK--KAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~V-kV~~VnT~~~~-~~~K--KA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.|+. ||+ +|.+|..+.-+ .|.- =|||++....+|......|
T Consensus 71 lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 132 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 466667789999999999976 887 89999887654 3332 3999999887766554433
No 19
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=87.62 E-value=2.3 Score=24.23 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=40.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVAN 81 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~K--KA~VtL~~g~~a~d~a~ 81 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. |.- =|+|++....+|.....
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTK-FG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 3555667889999999999966 66 677887766542 322 49999998877655443
No 20
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.52 E-value=1.2 Score=27.45 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 32 LQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 32 ~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
.+++..++++.|+. || +|..|.....+.|+ |+|++....+|.+...
T Consensus 27 ~~~te~~L~~~F~~-~G-~V~~v~i~~~~rGf--aFVeF~~~~~A~~Ai~ 72 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YG-EVLNLVLSSKKPGT--AVVEFATVKAAELAVQ 72 (100)
T ss_dssp CSCCHHHHHHHHHT-TS-CEEEEEEESSSSSE--EEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEccCCCCE--EEEEECCHHHHHHHHH
Confidence 56899999999987 77 57788877555665 9999998766655443
No 21
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.47 E-value=1.5 Score=26.35 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=42.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+.| .--|||++....+|......+
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSM-AG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 4556667889999999999986 66 6778887765544 235999999877666555443
No 22
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=87.43 E-value=1.3 Score=25.00 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=39.3
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~~K--KA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..++++.++. || +|.+|.....+ .|.. -|+|++....+|......
T Consensus 10 l~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 10 LYVGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp EEEECCCTTCCHHHHHHHHGG-GS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHhc-cC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 455567789999999999987 67 67777765432 2322 399999987776655444
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.14 E-value=1.2 Score=26.04 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+ .|. --|||++....+|......
T Consensus 11 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 11 LFVRNLSYTSSEEDLEKLFSA-YG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 344456789999999999987 66 66777765433 221 2499999987776655444
No 24
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.98 E-value=1.4 Score=26.41 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.|+. || +|..|.........--|+|++....+|......+
T Consensus 25 l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l 81 (109)
T 1x4a_A 25 IYVGNLPPDIRTKDIEDVFYK-YG-AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 81 (109)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHc
Confidence 445556789999999999988 66 4666666443322336999999877766555443
No 25
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.47 E-value=2.4 Score=25.35 Aligned_cols=54 Identities=7% Similarity=0.180 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++. || +|.+|..... .| -|+|++....+|......+
T Consensus 28 l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~g--~afV~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 28 VYCGGIASGLTDQLMRQTFSP-FG-QIMEIRVFPE-KG--YSFVRFSTHESAAHAIVSV 81 (109)
T ss_dssp EEEECCSSCCCHHHHHHHHHH-HS-CEEEEEEETT-TT--EEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeCC-CC--EEEEEECCHHHHHHHHHHc
Confidence 455556789999999999987 78 6777776543 44 5999999877766655443
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.46 E-value=1.9 Score=25.51 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=41.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC--CC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP--DG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~--~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.|+. || .|.+|.....+ .| .--|+|++....+|......+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 17 KILVRNIPFQANQREIRELFST-FG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHc-cC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 3455557889999999999988 66 57777776542 11 225999999887777666555
No 27
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=85.44 E-value=0.56 Score=30.08 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=33.8
Q ss_pred ccchhhhhhhhcCCEEEEEEe---CCCCHHHHHHHHHHHhCCceeeE
Q psy6375 11 LTTESAMKKIEDNNTLVFIVH---LQANKHHIKAAVKKMYDINVAKV 54 (86)
Q Consensus 11 ~~TEKs~~l~e~~n~~~F~V~---~~a~K~eIk~ave~lf~VkV~~V 54 (86)
+++++...|+.. .+++|.|. +..+|.||+..+-++|++++.-|
T Consensus 5 I~~~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~d~V 50 (102)
T 1ywx_A 5 IISDRNNPLLQR-REIKFTVSFDAATPSIKDVKMKLVAVLNANKQVL 50 (102)
T ss_dssp EEEEEEETTTTE-EEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTE
T ss_pred EEEeeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 456777788875 68888663 45699999999999999987544
No 28
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.39 E-value=1.4 Score=28.61 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=41.6
Q ss_pred CEEEEEE--eCC-CCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCC-CCcHHHHHHhh
Q psy6375 24 NTLVFIV--HLQ-ANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLAR-DYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V--~~~-a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~-g~~a~d~a~~~ 83 (86)
+.+.+.- +.+ +++.+||.+|.. || +|..|... .|-.-|||+++. ..+|.+.+.++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~-~G-~V~~Vd~~---~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSN-HG-EIKWIDFV---RGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCS-SC-CEEEEECC---TTCSEEEEEESSCHHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHh-cC-CEEEEEEe---cCCCEEEEEECCChHHHHHHHHHh
Confidence 5666554 677 899999999998 77 56666654 344579999998 56888888776
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=85.21 E-value=2.4 Score=25.00 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=39.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.|+. ||- |.+|.....+.|. --|||++....+|......
T Consensus 18 l~v~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 18 LFVGMLNKQQSEEDVLRLFQP-FGV-IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TSC-EEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCC-eEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 344456789999999999986 563 7788877655443 3599999987776555443
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.00 E-value=2.7 Score=24.17 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=41.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|+|++....+|......+
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHHT-TS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 3566667889999999999988 66 577887765443 2 235999999877766555443
No 31
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=84.98 E-value=1.1 Score=26.38 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=39.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDAL 77 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~ 77 (86)
+-|+-..+.+++..++++.+++ || +|.+|+.....+|+ |+|++....+|.
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~-~G-~i~~v~i~~~srGf--aFV~F~~~~~A~ 62 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQ-YG-EVVDVFIPKPFRAF--AFVTFADDKVAQ 62 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCSSCCSE--EEEEESCHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEeeCCCCE--EEEEECCHHHHH
Confidence 4566678889999999999987 67 47788777655675 999998776654
No 32
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=84.88 E-value=2.9 Score=25.04 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~K--KA~VtL~~g~~a~d~a~~~ 83 (86)
+-|+=..+.++|..++++.++. || +|.+|+...-+. |.- =|+|++....+|......+
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSS-IG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 4566678899999999999987 66 677888776432 332 3999999877766554443
No 33
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=84.86 E-value=2 Score=26.33 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=41.0
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
..-|+-.++.+++..++++.|+. || +|..|.... +| -|+|++....+|......|
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~--~g--~afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYR--DG--TGVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGG-GS-CEEEEEECT--TS--EEEEEESSHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEec--CC--EEEEEECCHHHHHHHHHHh
Confidence 45677788999999999999986 66 677776543 25 4999999877766555444
No 34
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=84.43 E-value=0.7 Score=29.50 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=33.1
Q ss_pred ccchhhhhhhhcCCEEEEEEe---CCCCHHHHHHHHHHHhCCceeeE
Q psy6375 11 LTTESAMKKIEDNNTLVFIVH---LQANKHHIKAAVKKMYDINVAKV 54 (86)
Q Consensus 11 ~~TEKs~~l~e~~n~~~F~V~---~~a~K~eIk~ave~lf~VkV~~V 54 (86)
++.++...|+.. .+++|.|. +..+|.||+..+-++|++++.-|
T Consensus 5 I~~~~~N~LL~R-ke~~~~v~H~~~tpsk~eirekLAk~~~~~~~~V 50 (101)
T 1xn9_A 5 IIKDKKNPLLNR-RELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELL 50 (101)
T ss_dssp EEEEEEETTTTE-EEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTE
T ss_pred EEEeeecCCcCc-EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 345666677765 68888664 45799999999999999987555
No 35
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.21 E-value=2.6 Score=24.24 Aligned_cols=51 Identities=14% Similarity=0.300 Sum_probs=36.7
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..++++.++. || +|.+|... .| -|+|++....+|......+
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~~~---~g--~afV~f~~~~~A~~A~~~l 62 (90)
T 2dnq_A 12 FIGNLPREATEQEIRSLFEQ-YG-KVLECDII---KN--YGFVHIEDKTAAEDAIRNL 62 (90)
T ss_dssp EEESCCSSCCHHHHHHHHHT-SS-CEEEEEEE---TT--EEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEE---CC--EEEEEECCHHHHHHHHHHh
Confidence 44446789999999999987 56 56677665 45 4999999877666554433
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=84.09 E-value=3.6 Score=22.97 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=39.8
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..++++.++. || +|.++.....+. | .--|+|++....+|......+
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKD-FP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTT-ST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 45556789999999999976 66 677887765432 3 235999999887766655443
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=83.97 E-value=3.8 Score=24.09 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=39.7
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|+|++....+|......
T Consensus 26 l~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 26 LFVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 455556789999999999977 56 677887765432 2 23499999987776655544
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=83.84 E-value=2.3 Score=24.61 Aligned_cols=56 Identities=9% Similarity=0.178 Sum_probs=38.9
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCC-ceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHHh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDI-NVAKVNTLIRP-DGKK--KAYVRLARDYDALDVANK 82 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~V-kV~~VnT~~~~-~~~K--KA~VtL~~g~~a~d~a~~ 82 (86)
|+-..+.+++..++++.++. ||+ +|.+|.....+ .|.- =|+|++....+|......
T Consensus 5 ~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH
Confidence 44456778999999999977 775 78899887654 2322 399999877665554433
No 39
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.77 E-value=4.5 Score=23.60 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=38.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
++-.|.-+.+++..++++.++. || +|.+|... ...|+ |+|++....+|......
T Consensus 15 ~~~l~V~n~~~t~~~l~~~F~~-~G-~i~~v~i~-~~~g~--afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 15 GNTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSMD-PPRNC--AFVTYEKMESADQAVAE 68 (97)
T ss_dssp CSEEEEECSSCCHHHHHHHHTT-TS-CEEEEEEE-TTTTE--EEEEESSHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHhh-CC-CEEEEEec-CCCCE--EEEEECCHHHHHHHHHH
Confidence 3445666679999999999987 66 57777663 34564 99999877666555443
No 40
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=83.72 E-value=3.8 Score=24.13 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=39.1
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
|+-.++.+++..+|++.|+. || +|.+|.....+.|. --|+|++....+|......
T Consensus 33 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 33 LVSNLDFGVSDADIQELFAE-FG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34446789999999999986 66 56777777655443 3599999977766555443
No 41
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=83.57 E-value=3.3 Score=25.86 Aligned_cols=59 Identities=14% Similarity=0.300 Sum_probs=43.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeE--EEEEcCCCCcHHHHHHhh
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKK--AYVRLARDYDALDVANKI 83 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KK--A~VtL~~g~~a~d~a~~~ 83 (86)
.+-|+-.++.+++..+|++.++. ||- |.+|.....+.|.-+ |+|++....+|......+
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSS-FGQ-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEcCCCCcCCHHHHHHHHHh-CCC-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 34556677889999999999986 664 778888776665433 999999877766654443
No 42
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=83.47 E-value=2.3 Score=28.72 Aligned_cols=56 Identities=7% Similarity=0.030 Sum_probs=42.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.++. ||.+|.+|..+....| -|+|++....+|......+
T Consensus 154 l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~g--~afV~f~~~~~A~~Ai~~l 209 (229)
T 2adc_A 154 LHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQKDRK--MALIQMGSVEEAVQALIDL 209 (229)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TSCCEEEEEECSSSTT--CEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCccCCHHHHHHHHHH-cCCCeeEEEEEECCCc--EEEEEECCHHHHHHHHHHH
Confidence 445556788999999999988 5888888887654445 6999999877766655543
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.21 E-value=1.1 Score=26.55 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=36.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC--Ce--eEEEEEcCCCCcHHHHH
Q psy6375 27 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD--GK--KKAYVRLARDYDALDVA 80 (86)
Q Consensus 27 ~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~--~~--KKA~VtL~~g~~a~d~a 80 (86)
+-.++.+++..+|++.++. || |.+|.....+. |. -=|||++....+|....
T Consensus 20 V~nlp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 20 LGNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp EESCCSSCCHHHHHHHTTT-SC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred EeCCCCcCCHHHHHHHHHH-CC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 3345789999999999987 58 88888775442 21 24999998776665544
No 44
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=83.07 E-value=2.2 Score=26.60 Aligned_cols=56 Identities=5% Similarity=0.049 Sum_probs=38.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEe-eCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTL-IRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~-~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.+++..++++.++. ||..|..+... ....| -|+|++....+|.....++
T Consensus 31 l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~~~rG--faFV~F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 31 ITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTRDFDG--TGALEFPSEEILVEALERL 87 (111)
T ss_dssp EEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSCSSSC--CEEEEESSHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcCCCCC--EEEEEECCHHHHHHHHHHc
Confidence 344455789999999999987 67667777664 22345 4999999876665554443
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=83.03 E-value=2.9 Score=23.60 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC----CeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD----GKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~----~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++. || .|.+|.....+. ..--|+|++....+|......+
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFST-YG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM 67 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHc
Confidence 455567889999999999987 66 666776655432 1235999999887766555443
No 46
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.03 E-value=2.5 Score=25.12 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC----CCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP----DGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~----~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.+++..++++.++. ||-.|.+|...... ...--|+|++....+|......+
T Consensus 11 l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 11 LFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred EEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 344456788999999999988 56557788665211 11225999999877766555544
No 47
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=82.83 E-value=3.6 Score=23.20 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=38.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHh---CC------ceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMY---DI------NVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf---~V------kV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
-|+-.++.+++..++++.++... |+ .|.++.+... .| -|+|++....+|....
T Consensus 9 l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg--~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 9 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KN--FAFLEFRSVDETTQAM 70 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SS--EEEEEESSHHHHHHHG
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-Cc--EEEEEcCCHHHHHHHH
Confidence 45556788999999999999854 75 6777776532 44 5999999776655443
No 48
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.71 E-value=1.4 Score=26.76 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~-~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++. || +|.+|.....+++ .--|||++....+|......+
T Consensus 32 l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l 89 (109)
T 2err_A 32 LHVSNIPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKL 89 (109)
T ss_dssp EEEESCCTTCCHHHHHHHGGG-TC-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHH
T ss_pred EEEECCCCcCCHHHHHHHHHh-cC-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHc
Confidence 344456789999999999987 56 5667776654332 225999999887776655543
No 49
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=82.64 E-value=2 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=37.5
Q ss_pred EEEEEEeCC-CCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQ-ANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~-a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+ ++..++++.|+. || +|.+|.. +.| -|+|++....+|......+
T Consensus 30 l~V~nl~~~~~t~~~l~~~F~~-~G-~v~~v~i---~~g--~afV~f~~~~~A~~A~~~l 82 (110)
T 1wf1_A 30 VFIGNLNTALVKKSDVETIFSK-YG-RVAGCSV---HKG--YAFVQYSNERHARAAVLGE 82 (110)
T ss_dssp EEECSCCCSSCCHHHHHHHHGG-GS-CCSEEEE---ETT--EEEEECSSSHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHHHHHHh-CC-CeEEEEE---eCC--EEEEEECCHHHHHHHHHHc
Confidence 344446777 999999999987 66 4556655 455 4999999888777665544
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=82.63 E-value=3 Score=25.38 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=41.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee-EEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK-KAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~K-KA~VtL~~g~~a~d~a~~ 82 (86)
|-|+=.++.+++..++++.|.. || +|.+|+....+++-| =|||++....+|......
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHhc-cC-CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 5666678899999999999987 77 577888776544322 399999987776555443
No 51
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=82.55 E-value=2.4 Score=26.83 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+=.++.+++..++++.|+. || .|.+|.....+.| =|+|++....+|......+
T Consensus 76 l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g--~afV~f~~~~~a~~A~~~l 130 (150)
T 2i2y_A 76 VYVGNLGNNGNKTELERAFGY-YG-PLRSVWVARNPPG--FAFVEFEDPRDAADAVREL 130 (150)
T ss_dssp EEEESCCSCCSCHHHHHHHHH-HS-CEEEEEECSSSCS--EEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-hC-CEEEEEEeeCCCc--EEEEEECCHHHHHHHHHHc
Confidence 444456789999999999987 67 6778877655456 4999999877766554443
No 52
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=82.24 E-value=5.6 Score=23.24 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=39.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-.++.+++..++++.++. || .|.+|.....+.|. -=|+|++....+|.....
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 12 VFVGGIDVRMDETEIRSFFAR-YG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 344456789999999999977 66 57788777654432 359999998888765443
No 53
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=82.08 E-value=2.4 Score=26.00 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.++. ||- |.+|.....+.| .--|+|++....+|......+
T Consensus 10 l~V~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 10 LFIGGLNRETNEKMLKAVFGK-HGP-ISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp EEEECCTTTCCHHHHHHHHHT-SSC-CSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHC
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 345556788999999999987 564 677777664432 235999999877766555443
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=81.85 E-value=2.8 Score=25.60 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=39.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.|+. || .|.+|.....+ .| .--|||++....+|......
T Consensus 25 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 25 LFVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 455566789999999999987 66 66777665443 11 22599999987776655444
No 55
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.65 E-value=2.9 Score=25.09 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=38.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..++++.|+. || +|..|..... | -|+|++....+|......|
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~~~i~~~--g--~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVYRD--G--TGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEETT--T--EEEEEESSHHHHHHHHHHS
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEecC--C--EEEEEECCHHHHHHHHHHH
Confidence 3455667889999999999986 66 5777766543 5 4999998876665554433
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.60 E-value=2.8 Score=24.65 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~-~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+.+ .--|||++....+|......+
T Consensus 18 l~V~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 18 LHVSNIPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp EEEESCCTTCCHHHHHHHGGG-TS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 344456789999999999987 55 5777777654432 236999999877766555443
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.59 E-value=4.2 Score=23.84 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=39.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|||++....+|......+
T Consensus 16 l~V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2dnm_A 16 LKVDNLTYRTSPDSLRRVFEK-YG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75 (103)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHc
Confidence 444556789999999999987 56 477777654332 2 225999999888877665544
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.57 E-value=3.4 Score=24.14 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+. + .--|+|++....+|......+
T Consensus 15 l~v~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 1x5s_A 15 LFVGGLSFDTNEQSLEQVFSK-YG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 74 (102)
T ss_dssp EEEESCCTTCCHHHHHHHHHH-HS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 444556789999999999987 55 466777655332 1 226999999877766655443
No 59
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=81.19 E-value=4.9 Score=26.98 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=43.4
Q ss_pred hcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHhhC
Q psy6375 21 EDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANKIG 84 (86)
Q Consensus 21 e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~~g 84 (86)
....-|+=..+.+++..++++.++. ||- |.+|+....+.|. ==|+|++....+|.......|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLED-KGQ-VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTT-SCC-EEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhc-CCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC
Confidence 3334566667889999999999987 664 7788776544332 249999998877666554443
No 60
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=81.11 E-value=3.3 Score=27.95 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=38.8
Q ss_pred EEEEEeC-CCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 26 LVFIVHL-QANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 26 ~~F~V~~-~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
|+-.++. +++..+|++.++. ||- |.+|+....+.|+ |+|++....+|.....
T Consensus 38 ~V~nLp~~~~te~~L~~~F~~-~G~-i~~v~i~~~~~g~--afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 38 LVSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLAMS 90 (229)
T ss_dssp EEESCCTTTCCHHHHHHHHHH-HTC-EEEEEECCTTSCC--EEEEESCHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHHHHHHh-CCC-eEEEEEEECCCCE--EEEEECCHHHHHHHHH
Confidence 3444566 8999999999987 664 7788887766665 9999998777655544
No 61
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.01 E-value=3 Score=24.05 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=36.7
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..++++.++. || +|.+|... .| -|+|++....+|......+
T Consensus 14 ~V~nLp~~~t~~~l~~~F~~-~G-~v~~v~~~---~~--~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 14 HVGNISPTCTNQELRAKFEE-YG-PVIECDIV---KD--YAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp EEESCCSSCCHHHHHHHHHT-TS-CCCEEEEC---SS--EEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEE---CC--EEEEEECCHHHHHHHHHHh
Confidence 34446788999999999988 66 46666654 33 6999999876666555443
No 62
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.99 E-value=3.4 Score=23.74 Aligned_cols=52 Identities=4% Similarity=0.119 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDV 79 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~ 79 (86)
-|+-.++.+++..+|++.++.. .|.+|.......| .--|||++....+|...
T Consensus 13 l~v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A 66 (91)
T 2dgw_A 13 VKLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 66 (91)
T ss_dssp EEEECCCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCEEEEEEEECSSHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHhhC---CceEEEEEECCCCCCceEEEEEECCHHHHHHH
Confidence 3445567899999999999985 5777877665444 23699999876654443
No 63
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=80.98 E-value=2.8 Score=25.62 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=37.7
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~ 81 (86)
|+-.++.+++..+|++.++. || +|.+|.....+.| .--|+|++....+|.....
T Consensus 39 ~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 39 LVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp EEESCCSSCCHHHHHHHHHT-TS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 44445788999999999988 66 5667776654332 2359999988766655444
No 64
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.89 E-value=3 Score=25.36 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=40.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVA 80 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a 80 (86)
.-|+-.++.++|..++++.++. || +|.+|+...-+.|. ==|||++....+|....
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLED-KG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-SS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhh-cC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHH
Confidence 4667778899999999999987 77 68888877544321 13999998776655433
No 65
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.58 E-value=3.8 Score=23.56 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=38.6
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
|+-.++.+++..+|++.++. || +|.+|.....+. | .--|+|++....+|......
T Consensus 9 ~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 9 YVGSLHFNITEDMLRGIFEP-FG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp EEESCCTTCCHHHHHHHHTT-TS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 44456788999999999987 66 577777765432 1 22699999987776655443
No 66
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=80.45 E-value=5.5 Score=24.49 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++++++..++++.++. || +|.+|.....+ .| .--|+|++....+|......
T Consensus 5 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 5 LIVNYLPQNMTQEEFRSLFGS-IG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 345557889999999999987 66 57888887655 23 23599999987766555443
No 67
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=80.40 E-value=4.5 Score=24.74 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=41.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~K--KA~VtL~~g~~a~d~a~~~ 83 (86)
+-|+-..+.+++..++++.+++ || +|.+|+...-+. |.- =|+|++....+|......+
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRK-YG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 4566777889999999999976 66 577888776543 322 3899998877766554443
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=80.29 E-value=5.4 Score=22.73 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=38.1
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-CeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..++++.++. || +|.+|......+ ..--|+|++....+|......+
T Consensus 12 ~V~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l 68 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFNE-CG-HVLYADIKMENGKSKGCGVVKFESPEVAERACRMM 68 (92)
T ss_dssp EECSCCTTCCHHHHHHHHHT-TS-CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHh
Confidence 34446788999999999998 55 566777665222 1235999999877766554443
No 69
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=80.06 E-value=4.6 Score=23.57 Aligned_cols=53 Identities=6% Similarity=0.075 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..++++.++. || .|.+|... ...|+ |+|++....+|......
T Consensus 30 l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~~~-~~~g~--afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 30 AYIGNIPHFATEADLIPLFQN-FG-FILDFKHY-PEKGC--CFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TS-CCSEEEEE-TTTTE--EEEECSSHHHHHHHHHH
T ss_pred EEEcCCCcccCHHHHHHHHHh-CC-CEEEEEEe-cCCCE--EEEEECCHHHHHHHHHH
Confidence 344456789999999999987 55 36677665 34454 99999987776655544
No 70
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=79.88 E-value=8.6 Score=23.91 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=42.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~~K--KA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-..+.+++..++++.++. || +|.+|.....+ .|.- -|+|++....+|......+
T Consensus 96 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 96 KLFIGGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp CEEEECCCTTCCHHHHHHHHHT-TS-CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred EEEEEcCCCcCCHHHHHHHHHh-cC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 4566667889999999999996 66 57788776654 3322 4999999988877665544
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=79.39 E-value=7 Score=23.39 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=40.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCe--eEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGK--KKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~~--KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.|+. ||- |.+|.....+ .|. --|||++....+|......+
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMP-FGN-VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGG-GSC-CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cCC-eEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 4566667889999999999986 553 6677766544 232 24999999877766655443
No 72
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=79.20 E-value=3.5 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.+++.+|+++...+...
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 57899999999999999999999999998887765
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.97 E-value=3.6 Score=24.38 Aligned_cols=58 Identities=10% Similarity=0.269 Sum_probs=40.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.|+. || .|.+|.....+. | .-=|||++....+|......+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQ-FG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 3455567889999999999987 66 567777664322 1 224999999887776665554
No 74
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=78.89 E-value=2.4 Score=25.74 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++. || .|.+|... .| -|+|++....+|......+
T Consensus 34 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~---kg--~afV~f~~~~~A~~Ai~~l 85 (108)
T 2jvo_A 34 LFVRPFPLDVQESELNEIFGP-FG-PMKEVKIL---NG--FAFVEFEEAESAAKAIEEV 85 (108)
T ss_dssp EEECSSCTTCCHHHHHHHHTT-TS-CCCEEEEE---TT--EEEEECSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHh-cC-CEEEEEEE---CC--EEEEEECCHHHHHHHHHHc
Confidence 344446788999999999987 55 46666665 55 4999999877766655443
No 75
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.87 E-value=3.2 Score=24.86 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~K--KA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..++++.++. || .|.++.....+.|.- =|||++....+|......
T Consensus 28 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 28 LYISNLPLSMDEQELENMLKP-FG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp EEEESCCTTCCHHHHHHTTTT-TS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 455567889999999998877 55 577887766544422 499999877666555443
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.86 E-value=6.5 Score=22.99 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-CeeEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-.++.+++..++++.++. || +|.+|.....+. +.-=|||++....+|.....
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 18 LYVGNLSRDVTEVLILQLFSQ-IG-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEEESCCTTCCHHHHHHHHHH-HS-CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCccCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 344446789999999999987 66 577777665432 22359999987766655444
No 77
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=78.85 E-value=3.1 Score=25.14 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=41.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhhC
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKIG 84 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~g 84 (86)
.-|+-.++.+++..++++.|+. || +|.+|+....+. | .-=|+|++....+|......+|
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFGQ-FG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHc-cC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 4556667889999999999987 66 577777765432 2 1259999998777666554443
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.77 E-value=5.5 Score=23.02 Aligned_cols=58 Identities=9% Similarity=0.189 Sum_probs=40.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC--C----eeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD--G----KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~--~----~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|+|++....+|......+
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l 70 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSK-VG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 70 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh
Confidence 3455667889999999999987 55 467777665332 2 335999999877766555443
No 79
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=78.72 E-value=3.7 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=31.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.+++..|+++...+...
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 57899999999999999999999999998888765
No 80
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=78.61 E-value=0.91 Score=28.82 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=33.7
Q ss_pred ccchhhhhhhhcCCEEEEEE-e---CCCCHHHHHHHHHHHhCCceeeEEE
Q psy6375 11 LTTESAMKKIEDNNTLVFIV-H---LQANKHHIKAAVKKMYDINVAKVNT 56 (86)
Q Consensus 11 ~~TEKs~~l~e~~n~~~F~V-~---~~a~K~eIk~ave~lf~VkV~~VnT 56 (86)
++.++...|+.. .+++|.| + +..+|.||+..+-++|++++.-|=.
T Consensus 5 I~~~~~N~LL~R-ke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv 53 (98)
T 2g1d_A 5 IKEKRDNPILKR-KEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIV 53 (98)
T ss_dssp EEEEEECSSSCE-EEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEEC
T ss_pred EEEeeecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 345566677765 6888865 4 3679999999999999998765543
No 81
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=78.60 E-value=3.5 Score=27.44 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=38.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-.++.+++..+|++.|+. || .|.+|.....+.|. --|||++....+|.....
T Consensus 91 l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~ 147 (177)
T 2f3j_A 91 LLVSNLDFGVSDADIQELFAE-FG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 147 (177)
T ss_dssp EEEECCCSCCCHHHHHHHHHH-TS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHH
Confidence 344456788999999999998 66 56677765543321 249999998776655544
No 82
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.54 E-value=3.5 Score=25.04 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.|+. || +|.+|.... .+|+ |+|++....+|......|
T Consensus 13 l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~-~~g~--afV~f~~~~~A~~Ai~~l 66 (111)
T 1whx_A 13 ILAKNLPAGTLAAEIQETFSR-FG-SLGRVLLPE-GGIT--AIVEFLEPLEARKAFRHL 66 (111)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCS-SSSC--EEEEESCHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEeC-CCCE--EEEEeCCHHHHHHHHHHh
Confidence 344456789999999999987 77 556665442 3444 999999877666554443
No 83
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=78.49 E-value=3.1 Score=26.98 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=39.0
Q ss_pred EEEEEEeC-CCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHL-QANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~-~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-..++ +++..++++.++. ||- |.+|.....+.|+ |+|++....+|.....
T Consensus 6 l~v~nlp~~~~~~~~l~~~F~~-~G~-i~~v~i~~~~~g~--afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 6 LLVSNLNPERVTPQSLFILFGV-YGD-VQRVKILFNKKEN--ALVQMADGNQAQLAMS 59 (198)
T ss_dssp EEEECCCSSSCCHHHHHHHHHT-TCC-CSEEECSTTCSSC--CEEECTTTHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHHHHHHh-cCC-EEEEEEEeCCCCE--EEEEECCHHHHHHHHH
Confidence 34445677 8999999999987 664 7778777655564 9999998877665444
No 84
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.30 E-value=3.7 Score=24.09 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=40.8
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
..-|+-.++.+++..+|++.++. || +|.+|..... .| .--|||++....+|......
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSP-FG-TITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTT-TS-CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHH
Confidence 34566677889999999999886 66 4777777654 33 23599999977766655443
No 85
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=78.15 E-value=4.4 Score=22.95 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=31.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.++..+|+++...+...
T Consensus 15 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 68899999999999999999999999998877654
No 86
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=77.88 E-value=7.5 Score=23.98 Aligned_cols=56 Identities=9% Similarity=0.232 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.|+. || +|.+|.....+. | .--|||++....+|......
T Consensus 45 l~V~nLp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 45 LMVNYIPTTVDEVQLRQLFER-YG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp EEEESCSTTCCHHHHHHHHHH-HS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 444557789999999999988 66 577888776543 3 23599999987776665543
No 87
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.42 E-value=2.1 Score=25.88 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 80 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~K--KA~VtL~~g~~a~d~a 80 (86)
-|+-.++.+++..||++.++. || .+ +|.....+.|.- -|||++....+|....
T Consensus 18 l~V~nLp~~~te~~l~~~F~~-~G-~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 18 VHMRGLPYRATENDIYNFFSP-LN-PM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp EEEESCCTTCCHHHHHHSSCS-CC-CS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-cC-ce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 444556889999999999887 77 33 888776655533 4999999876655443
No 88
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=77.40 E-value=2.4 Score=27.15 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=38.3
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
|+-..+.+++..+|++.|+.. ++...+|....-+.|. =-|||++....+|......
T Consensus 46 fVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 46 RLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp EEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 444468899999999999985 5443377766544332 1499999988776654443
No 89
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=77.17 E-value=7.3 Score=22.11 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=40.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++. || +|.+|.....+. | .--|+|++.... |......+
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l 62 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQ-FG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL 62 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHH-HT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS
T ss_pred EEECCCCCCCCHHHHHHHHHh-cC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh
Confidence 356677889999999999988 66 566777654332 2 335999998876 76666543
No 90
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=77.12 E-value=4.2 Score=23.11 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=32.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|++.+++++...+.+.
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 57899999999999999999999999998887665
No 91
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.90 E-value=4.9 Score=23.58 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+. + .--|||++....+|......+
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (105)
T 1x5u_A 18 VYVGGLDEKVSEPLLWELFLQ-AG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 77 (105)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHh
Confidence 445556889999999999988 56 577777665431 1 114999999887766555443
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.65 E-value=4.6 Score=25.24 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=40.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
+-|+=.++.+++..++++.++. || +|.+|..+.. +| =|+|++....+|......+
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~-fG-~V~~v~i~~~-kG--faFVeF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLP-FG-KVTNLLMLKG-KN--QAFIEMNTEEAANTMVNYY 72 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHH-HC-CEEEEEEETT-TT--EEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEcC-CC--EEEEEECCHHHHHHHHHHh
Confidence 3455566789999999999987 78 5778876542 34 4999999877776665543
No 93
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=76.53 E-value=7.2 Score=24.19 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=38.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
++-.|.-+.+++..++++.|+. || .|.+|... ...|+ |+|++....+|......
T Consensus 39 ~~~lfVgnl~~te~~L~~~F~~-~G-~I~~v~i~-~~kg~--aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 39 GNTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSMD-PPRNC--AFVTYEKMESADQAVAE 92 (121)
T ss_dssp CCEEEEECSSCCHHHHHHHHST-TC-CCSCEEEE-TTTTE--EEEECSSHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHc-cC-CEEEEEEe-CCCCE--EEEEECCHHHHHHHHHH
Confidence 4556777789999999999887 66 46666654 44564 99999887766555444
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.15 E-value=5.1 Score=24.04 Aligned_cols=57 Identities=9% Similarity=0.184 Sum_probs=39.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..+|++.|+. || +|.+|.....+. + .--|||++....+|......
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 19 KIFVGGLPYHTTDASLRKYFEG-FG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp EEEEECCCSSCCHHHHHHHHHT-TS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 3455667889999999999986 56 377777665432 1 12599999877666554433
No 95
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.06 E-value=9.4 Score=22.32 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=37.9
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q psy6375 27 VFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVA 80 (86)
Q Consensus 27 ~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a 80 (86)
+-.++.+++..+|++.|+. || +|.+|.....+. | .--|||++....+|....
T Consensus 21 V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 21 VGGLDWSTTQETLRSYFSQ-YG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp CBSCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHH
Confidence 3346789999999999988 66 677888776532 2 225999999887765543
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.98 E-value=7.9 Score=22.49 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=40.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..++++.++. || +|.+|.....+ .| .--|+|++....+|......
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSE-VG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHT-TS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHHh-cC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4566667889999999999987 66 57777776543 22 34699999887776655443
No 97
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=75.79 E-value=5 Score=23.56 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=32.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.|.|+++.|=.++|+.|+..+|+.+...+.+.
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 57899999999999999999999999999887764
No 98
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.75 E-value=6.5 Score=22.79 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=39.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..++++.++. || +|.+|..... .| -|+|++....+|......+
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~~~~~-~g--~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDR-FG-SIRTIDHVKG-DS--FAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TS-CEEEEEECSS-SC--CEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeCC-CC--EEEEEECCHHHHHHHHHHH
Confidence 4556667889999999999987 66 4667765432 33 6999999877766555433
No 99
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=75.55 E-value=6.5 Score=22.73 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.+.|+++.|=.++|+.|+..+|+++...+.+.
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 368899999999999999999999999998887654
No 100
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=75.50 E-value=5.6 Score=23.77 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=39.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++. || .|.+|.........--|+|++....+|......+
T Consensus 11 l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 67 (115)
T 3lqv_A 11 LYIRNLPYKITAEEMYDIFGK-YG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHL 67 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHc
Confidence 455567889999999999986 55 4667766644433335999999877665554433
No 101
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=75.44 E-value=6.5 Score=22.73 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=38.7
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..++++.++. || .|.+|.....+. | .--|+|++....+|......+
T Consensus 6 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 6 YLGSIPYDQTEEQILDLCSN-VG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 34446778999999999987 66 577777665432 2 235999999877766655443
No 102
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=75.37 E-value=4.3 Score=26.25 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=40.6
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+..++.+.+..++++.++. ||.+|.+|..+....| -|+|++....+|......+
T Consensus 124 ~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~~~g--~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 124 HLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQKDRK--MALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp EECCCCTTCCHHHHHHHHHH-TTSCCCEEEESSTTSS--CEEEECSSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeCCCc--EEEEEeCCHHHHHHHHHHh
Confidence 34456788999999999988 5878888877553444 6999999877766554433
No 103
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=75.36 E-value=13 Score=23.60 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=41.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.+++..+|++.++. || .|.+|.....+ .| .--|+|++....+|......+
T Consensus 117 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 176 (198)
T 2yh0_A 117 LFIGGLPNYLNDDQVKELLTS-FG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 176 (198)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-BS-CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-cC-CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 344456778999999999987 66 57788777654 23 335999999888877665543
No 104
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=75.16 E-value=8.8 Score=23.81 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=41.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-----eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-----KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~-----~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.+++..+|++.++. || +|.+|.....+.+ .--|+|++....+|......+
T Consensus 6 l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 6 MFVGQVPRTWSEKDLRELFEQ-YG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 67 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 344557789999999999987 67 5888888765533 335999999887766554433
No 105
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=75.14 E-value=7.3 Score=23.44 Aligned_cols=56 Identities=9% Similarity=0.272 Sum_probs=39.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|+|++....+|......
T Consensus 29 l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 29 LYVGSLHFNITEDMLRGIFEP-FG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp EEEECCCSSCCHHHHHHHHTT-TS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 344455789999999999976 66 577887765432 2 22599999987776655443
No 106
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=75.11 E-value=5.9 Score=22.02 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=31.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.++...|+++...+...
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 47889999999999999999999999998888764
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.81 E-value=7.7 Score=23.13 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=39.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVA 80 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a 80 (86)
.-|+-.++.+++..+|++.|+. || .|.+|.....+. | .--|||++....+|....
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSA-VG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 4566667889999999999977 66 677777764332 1 125999999887766554
No 108
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=74.63 E-value=5.2 Score=22.65 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.+++.+++++...+.+.
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 58899999999999999999999999998887664
No 109
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=74.53 E-value=2.5 Score=27.16 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=33.1
Q ss_pred cchhhhhhhhcCCEEEEEE-e---CCCCHHHHHHHHHHHhCCceeeEEE
Q psy6375 12 TTESAMKKIEDNNTLVFIV-H---LQANKHHIKAAVKKMYDINVAKVNT 56 (86)
Q Consensus 12 ~TEKs~~l~e~~n~~~F~V-~---~~a~K~eIk~ave~lf~VkV~~VnT 56 (86)
..++...|+.. .+++|.| + +..+|.||+..+-++|++++.-|-.
T Consensus 14 ~k~~~N~LL~R-ke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv 61 (107)
T 2v94_A 14 TEVKENKLIGR-KEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVI 61 (107)
T ss_dssp EEEEEETTTTE-EEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEeeecCCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 44555677765 7888865 4 3668999999999999998765533
No 110
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=74.28 E-value=4.7 Score=23.71 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=32.2
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.+.|+++.|=.++|+.|+..+|+++...+.+.
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 368899999999999999999999999998887654
No 111
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=74.01 E-value=11 Score=24.39 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=42.5
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCC-ceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDI-NVAKVNTLIRPD-GKK--KAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~V-kV~~VnT~~~~~-~~K--KA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-..+.+++..++++.|+. ||. +|.+|....-+. |.- =|+|++....+|......
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4566677889999999999976 775 899998876542 322 399999877665554443
No 112
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=73.77 E-value=6.6 Score=23.01 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=38.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..+|++.++. || +|.+|+....+. | .--|+|++....+|......+
T Consensus 16 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (106)
T 2dgp_A 16 LFIGQIPRNLDEKDLKPLFEE-FG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 75 (106)
T ss_dssp EEEESCCTTCCHHHHHHHHHH-HS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 344456789999999999998 56 567777665332 1 124999999877766554433
No 113
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.70 E-value=5.1 Score=22.53 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=31.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.++..+|+++...+...
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 57899999999999999999999999998877765
No 114
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=73.49 E-value=4.7 Score=23.69 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=37.4
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVA 80 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a 80 (86)
|+-.++.+++..+|++.++.. | |.+|.....+. | .-=|||++....+|....
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~-g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 19 YVGNLPFNTVQGDIDAIFKDL-S--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp EEESCCTTCCHHHHHHHTTTS-C--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred EEeCCCCCCCHHHHHHHHHhC-C--ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 334467899999999999986 6 88888876543 2 225999998776655443
No 115
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=73.40 E-value=8.1 Score=22.40 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.|.|+++.|=.++|+.|+..+|+.+...+.+.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 368899999999999999999999999998887654
No 116
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=73.27 E-value=1.1 Score=26.64 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC--CC--eeEEEEEcCCCCcHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP--DG--KKKAYVRLARDYDALDVA 80 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~--~~--~KKA~VtL~~g~~a~d~a 80 (86)
-|+-.++.+++..++++.++. || |.+|.....+ .| .--|+|++....+|....
T Consensus 22 l~V~nLp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 22 AFLGNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp EEESCCSSCCSSSHHHHHSCS-SC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH
Confidence 344456789999999999987 68 8888876544 11 225999999776665544
No 117
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=73.06 E-value=4.6 Score=24.22 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.|.|+++.|=.++|+.|+..+|+++...+.+.
T Consensus 32 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 32 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 368999999999999999999999999998887664
No 118
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.84 E-value=6 Score=22.72 Aligned_cols=35 Identities=3% Similarity=0.067 Sum_probs=31.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 47899999999999999999999999998887764
No 119
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=72.25 E-value=7.9 Score=23.48 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=31.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
+++.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 32 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 32 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 46899999999999999999999999998888765
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.06 E-value=4.9 Score=25.57 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+=.++.+++..++++.++. || +|.+|..+.. +| -|+|++....+|......
T Consensus 34 LfVgNLp~~vte~dL~~lF~~-fG-~V~~v~i~~~-kG--~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 34 IHIRKLPIDVTEGEVISLGLP-FG-KVTNLLMLKG-KN--QAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CCCEEEEEGG-GT--EEEEECSCHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEeCC-CC--EEEEEECCHHHHHHHHHH
Confidence 455556789999999999987 77 4667776542 34 599999988777665543
No 121
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.04 E-value=11 Score=21.91 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=39.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 81 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~--KKA~VtL~~g~~a~d~a~ 81 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. |. --|||++....+|.....
T Consensus 17 ~l~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 17 DLIVLGLPWKTTEQDLKEYFST-FG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CEEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEEcCCCcCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 3455567889999999999977 66 477887766542 32 249999987766555443
No 122
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=71.74 E-value=5.2 Score=23.51 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=32.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.++..+|+++...+.+.
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 68899999999999999999999999998887765
No 123
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=71.64 E-value=7.3 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.|.|+++.|=.++|+.|+..+|+++...+.+.
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 368999999999999999999999999998887764
No 124
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=71.63 E-value=11 Score=21.11 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=39.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC---CeeEEEEEcCCCCcHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD---GKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~---~~KKA~VtL~~g~~a~d~a 80 (86)
.-|+-.++.+++..++++.++. || .|.+|.....+. ..--|+|++....+|....
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHG-CG-SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GC-CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 3555667889999999999987 66 577787765431 2346999999876655443
No 125
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.58 E-value=3.9 Score=25.27 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDV 79 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~ 79 (86)
-|+-..+.+++..+|++.|+.. +|.+|....-+.|. =-|||++....+|...
T Consensus 19 v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~A 72 (109)
T 2dnn_A 19 VSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 72 (109)
T ss_dssp EEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTTCCCCSEEEEECSSHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCCCCCCeEEEEEECCHHHHHHH
Confidence 4444567899999999999985 56778776544332 2599999977665543
No 126
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=71.56 E-value=11 Score=21.03 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=39.2
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..++++.++. || .|.+|.....+ .| .--|+|++....+|......+
T Consensus 10 ~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 10 FVGDLSPEITTAAIAAAFAP-FG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp EEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 33445778999999999986 66 47788776643 22 235999999877766655543
No 127
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=71.43 E-value=16 Score=23.11 Aligned_cols=54 Identities=7% Similarity=-0.006 Sum_probs=39.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHH---hCC------ceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKM---YDI------NVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~l---f~V------kV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
.-|+-.++.+++..+|++.++.. .|+ .|.++.+.. ..| -|||++....+|....
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-~~g--~afV~F~~~~~A~~Al 68 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKN--FAFLEFRSVDETTQAM 68 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-TTT--EEEEEESCSHHHHHHG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-CCC--EEEEEeCCHHHHHHHH
Confidence 34555678899999999999985 265 677777643 345 4999999887765544
No 128
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=71.23 E-value=5.8 Score=27.33 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=38.4
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
|+-..+.+++..++++.+.. ||..|.+|.....+.| .--|+|++....+|......
T Consensus 121 ~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 121 WMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp EEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 33446789999999999988 7878888877654422 22499999987776655443
No 129
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=71.16 E-value=13 Score=22.75 Aligned_cols=57 Identities=11% Similarity=0.271 Sum_probs=40.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.+++..+|++.++. || .|.++.....+ .| .--|+|++....+|......+
T Consensus 91 l~v~nl~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 91 LYVSGLPKTMTQKELEQLFSQ-YG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCcCCHHHHHHHHHh-cC-CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 455556788999999999987 55 56777776544 23 235999999887776655543
No 130
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=71.14 E-value=8.5 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=42.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.++|..+|++.+.. || .|.+|.....+.|. --|+|++....+|......+
T Consensus 99 l~v~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 99 LTVKNLSPVVSNELLEQAFSQ-FG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHHHHh-cC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 344456788999999999976 78 78888877665553 34999999887776665554
No 131
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=71.02 E-value=9.2 Score=23.61 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=39.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~--KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-.++++++..++++.++. || +|.+|.....+. |. --|+|++....+|.....
T Consensus 6 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (168)
T 1b7f_A 6 LIVNYLPQDMTDRELYALFRA-IG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 63 (168)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHH
Confidence 455567889999999999988 66 477777765432 21 249999998777665544
No 132
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=70.99 E-value=11 Score=24.36 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=42.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.++. || .|.+|.....+. | .--|+|++....+|......+
T Consensus 127 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 127 RIYVASVHQDLSDDDIKSVFEA-FG-KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHTT-SS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCcCCHHHHHHHHhc-cC-CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 3455567889999999999987 67 788888876542 2 235999999877766655543
No 133
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=70.88 E-value=2.3 Score=24.55 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=36.5
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
.-|+-..+.+++..++++.++.. .|.+|... ...| -|+|++....+|.....
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~-~~~g--~afV~f~~~~~a~~Ai~ 58 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDY---DLKYCYVD-RNKR--TAFVTLLNGEQAQNAIQ 58 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSS---CCCCEEEE-GGGT--EEEECCSCHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEe-CCCc--EEEEEECCHHHHHHHHH
Confidence 34555677899999999999886 56666553 3445 49999987766555444
No 134
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=70.85 E-value=7.3 Score=22.81 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=32.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.+.|+++.|=.++|+.|+..+|+.+...+.+.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 368899999999999999999999999998887665
No 135
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.83 E-value=6.3 Score=22.93 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=39.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++. || +|.+|.... ..| -|+|++....+|......+
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~~~~-~kg--~afV~f~~~~~a~~a~~~l 71 (99)
T 2cpj_A 18 LFVGNLPPDITEEEMRKLFEK-YG-KAGEVFIHK-DKG--FGFIRLETRTLAEIAKVEL 71 (99)
T ss_dssp EEEESCCTTCCHHHHHHHTST-TC-CCSEEEEET-TTT--EEEEECSSSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHhh-cC-CeEEEEEec-CCC--EEEEEECCHHHHHHHHHHh
Confidence 455567889999999999887 55 566776653 234 6999999887776655443
No 136
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.77 E-value=7.2 Score=22.72 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=36.5
Q ss_pred EEEEEEeCCCCHHHHH----HHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIK----AAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk----~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+=.++.+++..+++ +.++. || +|.+|....-+.+.--|+|++....+|......+
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~-~G-~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l 72 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFAR-HG-KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSL 72 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHH-HS-CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHhccc-cC-cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHh
Confidence 3444567899999999 55544 45 5777776643322224999999877766554433
No 137
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.59 E-value=9.2 Score=23.16 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=31.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
+++.+.|+++.|=.++|+.|+..+|+.+...+.+.
T Consensus 27 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 27 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp CEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 46899999999999999999999999998888765
No 138
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=70.55 E-value=5.4 Score=22.85 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.9
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.+.|+++.|=.++|+.++..+|+++...+.+.
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 368999999999999999999999999998876654
No 139
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=70.10 E-value=8.3 Score=22.54 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 57899999999999999999999999998887764
No 140
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=69.83 E-value=11 Score=21.21 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=31.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.|.|+++.+=.++|++++...|+++...+..-
T Consensus 14 ~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 14 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 58899999999999999999999999998877654
No 141
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=69.70 E-value=10 Score=24.12 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=38.7
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-.++.+++..+|++.++. || .|.+|.....+ .| .--|+|++....+|.....
T Consensus 107 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 107 IFVGGIKEDTEEHHLRDYFEQ-YG-KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCTTTCCHHHHHHHHTT-TS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 345556788999999999985 66 57788777654 23 2249999998776665544
No 142
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=69.45 E-value=9.2 Score=22.44 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=32.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 68999999999999999999999999998887765
No 143
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=69.15 E-value=11 Score=22.88 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=32.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 57899999999999999999999999998888765
No 144
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=68.95 E-value=8.1 Score=22.93 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 57899999999999999999999999998887765
No 145
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.82 E-value=5.3 Score=25.26 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=36.2
Q ss_pred EEeCCCCHHHHHHHHHHHhCC--ceeeEEEeeCCCCee--EEEEEcCCCCcHHHH
Q psy6375 29 IVHLQANKHHIKAAVKKMYDI--NVAKVNTLIRPDGKK--KAYVRLARDYDALDV 79 (86)
Q Consensus 29 ~V~~~a~K~eIk~ave~lf~V--kV~~VnT~~~~~~~K--KA~VtL~~g~~a~d~ 79 (86)
-.+.+++..+|++.|+..-.| .|..|....-+.|.- -|||++....+|...
T Consensus 30 nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 30 GLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp SCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 346799999999999985444 367787765444432 499999877665543
No 146
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.73 E-value=6.4 Score=23.99 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-..+.+++..++++.++. || +|.+|..+. .+| -|+|.+....+|......
T Consensus 18 l~V~nLp~~~te~~L~~~F~~-fG-~V~~v~i~~-~kg--~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 18 VHVRGLCESVVEADLVEALEK-FG-TICYVMMMP-FKR--QALVEFENIDSAKECVTF 70 (104)
T ss_dssp EEEESCCSSCCHHHHHHHHTT-TS-CEEEEEEET-TTT--EEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEC-CCC--EEEEEECCHHHHHHHHHH
Confidence 344456678999999999987 78 677776553 234 599999987777666554
No 147
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=68.66 E-value=12 Score=21.98 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=36.4
Q ss_pred EEEEEEeC-CCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHL-QANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~-~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+. +++..++++.++. ||- |.+|.. +.| -|+|++....+|......+
T Consensus 25 l~V~nLp~~~~t~~~L~~~F~~-~G~-v~~v~i---~~g--~afV~f~~~~~A~~Ai~~l 77 (97)
T 2xnq_A 25 LFIGNLPLKNVSKEDLFRIFSP-YGH-IMQINI---KNA--FGFIQFDNPQSVRDAIEXE 77 (97)
T ss_dssp EEEESCCSSCCCHHHHHHHHGG-GSC-EEEEEE---CSS--EEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHHHHHHh-cCC-EEEEEE---eCC--EEEEEECCHHHHHHHHHHc
Confidence 34444565 8999999999987 663 556655 355 4999999887766655543
No 148
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.61 E-value=12 Score=20.86 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=40.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..++++.++. ||- |.+|.... ..| -|+|++....+|......+
T Consensus 14 ~l~V~~l~~~~t~~~l~~~f~~-~G~-i~~~~~~~-~kg--~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 14 TLYVGGLGDTITETDLRNHFYQ-FGE-IRTITVVQ-RQQ--CAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp CEEEECCTTTSCHHHHHHHHHT-TSC-EEEEEEEG-GGT--EEEEEESSHHHHHHHHHTT
T ss_pred EEEEcCCCCCCCHHHHHHHHHh-CCC-EeEEEEEC-CCC--EEEEEECCHHHHHHHHHHh
Confidence 4556667889999999999987 664 66776654 234 5999999887766665544
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.61 E-value=11 Score=21.37 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=37.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..++++.++. ||- |.+|... .| -|+|++....+|......
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~-~G~-v~~~~~~---~~--~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFER-RGR-VIECDVV---KD--YAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHH-HSC-EEEEEEC---SS--CEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHc-CCC-EEEEEEE---CC--EEEEEECCHHHHHHHHHH
Confidence 4556667889999999999988 664 6666554 34 699999987766655443
No 150
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=68.50 E-value=6.5 Score=23.40 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.|.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 57899999999999999999999999998887765
No 151
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=68.23 E-value=14 Score=21.39 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=38.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceee--------EEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAK--------VNTLIRPD-G--KKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~--------VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~ 81 (86)
.-|+-.++.+++..++++.++. || .|.+ +.....+. | .--|+|++....+|.....
T Consensus 15 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 15 TIFVQGLGENVTIESVADYFKQ-IG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp EEEEECCCSSCCHHHHHHHHTT-TS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-hC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 4566667889999999999986 66 4555 66665432 2 2259999998776655444
No 152
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.10 E-value=5.5 Score=24.22 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=36.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+=.++.+++..++++.++. || +|.+|..+. .+| -|+|++....+|......
T Consensus 18 l~V~nLp~~~te~~L~~~F~~-fG-~v~~v~i~~-~kg--~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 18 LHIRKLPGEVTETEVIALGLP-FG-KVTNILMLK-GKN--QAFLELATEEAAITMVNY 70 (101)
T ss_dssp EEEESCCTTCCHHHHHHTTTT-TS-CEEEEEEET-TTT--EEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEC-CCC--EEEEEECCHHHHHHHHHH
Confidence 344456789999999988876 77 466775543 234 599999987776665543
No 153
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=67.66 E-value=7.1 Score=22.89 Aligned_cols=35 Identities=6% Similarity=0.158 Sum_probs=31.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|++++|=.++|+.|+...|+++...+.+.
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 57889999999999999999999999998887764
No 154
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.36 E-value=2.9 Score=23.95 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=35.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDAL 77 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~ 77 (86)
-|+-.++.+++..++++.++. || +|.+|+......|+ |||++....+|.
T Consensus 8 l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~g~--afV~f~~~~~a~ 56 (88)
T 1wf0_A 8 VFVGRCTGDMTEDELREFFSQ-YG-DVMDVFIPKPFRAF--AFVTFADDQIAQ 56 (88)
T ss_dssp EEEESCCSSSCHHHHHHHSTT-TS-CCCEEECCSSCCSC--CEEECSCHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH-cC-CeeEEEEecCCCCE--EEEEECCHHHHH
Confidence 455557889999999998876 56 36777766544554 999998766653
No 155
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.70 E-value=11 Score=23.81 Aligned_cols=49 Identities=6% Similarity=0.042 Sum_probs=37.0
Q ss_pred EeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 30 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 30 V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.+.+++..++++.|++ || .|.+|.... .+| =|+|++....+|.+....|
T Consensus 35 L~~~~te~~L~~~F~~-fG-~v~~v~i~~-~rg--faFV~f~~~~~A~~Ai~~l 83 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEK-CG-LVDALLMPP-NKP--YSFARYRTTEESKRAYVTL 83 (114)
T ss_dssp GGGTCCHHHHHHHHHH-HS-CEEEEECCT-TCS--CEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEeC-CCC--EEEEEECCHHHHHHHHHHh
Confidence 5678999999999987 88 787776532 234 4999999887777666554
No 156
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.54 E-value=9.1 Score=22.15 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVA 80 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a 80 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+. | .-=|||++....+|....
T Consensus 13 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 13 IFVGGIPHNCGETELREYFKK-FG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp EEEESCCSSCCHHHHHHHHSS-SS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHH
Confidence 344456789999999999988 66 677777765432 2 224999998776654443
No 157
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.26 E-value=6.1 Score=23.01 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=39.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|||++....+|......
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTT-TS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHhhc-cC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3455567889999999999988 55 566776654322 2 22499999987776655443
No 158
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=65.84 E-value=7.9 Score=24.22 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC---CeeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD---GKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~---~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..+|++.|+. || +|.+|.....+. ..--|||++....+|......+
T Consensus 48 ~l~V~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l 108 (129)
T 2kxn_B 48 CLGVFGLSLYTTERDLREVFSK-YG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 108 (129)
T ss_dssp CBCEETCTTSCCHHHHHHHHTT-TS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3455567889999999999987 66 577777664332 1225999999877766555443
No 159
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=65.62 E-value=17 Score=22.90 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=39.1
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..+|++.|+. || +|.+|.....+. + .--|+|++....+|......|
T Consensus 43 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 43 YVGNLSFYTTEEQIYELFSK-SG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp EEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 34446788999999999976 56 477887766543 2 235999999877766655543
No 160
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.97 E-value=7.2 Score=23.02 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=31.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+.+...+.+.
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 58899999999999999999999999988776654
No 161
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.79 E-value=8.9 Score=21.85 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=39.5
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|+|++....+|......
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSK-YG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTT-TS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4566667889999999999977 56 477777655332 1 12599999987766655443
No 162
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=64.74 E-value=4.6 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+.+...+.+.
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 47899999999999999999999999998888765
No 163
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=64.25 E-value=20 Score=21.21 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=38.6
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..+|++.|+. ||- |.+|.....+ .| .--|||++....+|......+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFAP-FGR-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 34445779999999999986 553 7778776643 22 236999999877766555443
No 164
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=64.03 E-value=16 Score=21.32 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=37.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..++++.++. || +|.+|... .| -|+|++....+|......
T Consensus 13 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~~~---~~--~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 13 VLFVRNLANTVTEEILEKAFSQ-FG-KLERVKKL---KD--YAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHH-HS-CEEEEEEC---SS--CEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEE---CC--EEEEEeCCHHHHHHHHHH
Confidence 4566667889999999999988 55 35555543 44 599999887766655443
No 165
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=63.81 E-value=6.5 Score=23.57 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=41.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+=..++++|..+|++.++..=.+.+.+|+...-+. |. ==|+|++....+|......
T Consensus 12 lfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp EEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 4556688999999999999884346888888765332 21 1399999988777665544
No 166
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.42 E-value=11 Score=21.59 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=37.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-.++.+++..++++.++. ||.-+..+... ..|+ |+|++....+|......+
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~--~~g~--afV~f~~~~~A~~A~~~l 64 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL--KSGY--AFVDYPDQNWAIRAIETL 64 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE--ETTE--EEECCSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc--CCCE--EEEEECCHHHHHHHHHHc
Confidence 4566678899999999999988 55433333322 3454 999999877766655444
No 167
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.92 E-value=7.7 Score=22.65 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=38.4
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..+|++.++. || +|.+|.....+ .| .--|||++....+|......+
T Consensus 19 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (103)
T 2cq0_A 19 RVTNLSEDTRETDLQELFRP-FG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 77 (103)
T ss_dssp EEESCCTTCCHHHHHTTSTT-TC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc
Confidence 44445678999999988876 56 57788776543 22 225999999877766555433
No 168
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=62.90 E-value=16 Score=22.52 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.1
Q ss_pred EEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 29 IVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 29 ~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
..+.++|..++++.++. || +|.+|..+. .+| -|+|.+....+|.....
T Consensus 28 NLp~~~te~~L~~lF~~-fG-~V~~v~i~~-~kg--~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 28 GLIDGVVEADLVEALQE-FG-PISYVVVMP-KKR--QALVEFEDVLGACNAVN 75 (100)
T ss_dssp SCCTTCCHHHHHHHHGG-GS-CEEEEEEET-TTT--EEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhc-cC-CEEEEEEEc-CCC--EEEEEECCHHHHHHHHH
Confidence 45678999999999987 77 577887653 334 69999987766655444
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.90 E-value=17 Score=23.03 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=36.3
Q ss_pred EeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 30 VHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 30 V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.+.+++..++++.|.. || .|.+|..... .|+ .|+|.+....+|.+-...|
T Consensus 33 L~~~vt~~~L~~~Fs~-yG-~V~~v~i~~~-~Gf-~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 33 PLYPITVDVLYTVCNP-VG-KVQRIVIFKR-NGI-QAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp CCSCCCHHHHHHHHTT-TS-CEEEEEEEES-SSE-EEEEEESSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHh-cC-CEEEEEEEeC-CCC-EEEEEECCHHHHHHHHHHh
Confidence 4568999999998887 66 4778877553 454 6999998877666554443
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=62.86 E-value=11 Score=25.77 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=39.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.-|+-..+.+++..++++.++. || |.++.. ....| -|||++....+|......+
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~-~G--i~~~~~-~~~~g--~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSD-YE--LKYCFV-DKYKG--TAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTT-SC--EEEEEE-ETTTT--EEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-cC--CEEEEE-ecCCC--EEEEEeCCHHHHHHHHHHc
Confidence 3556668889999999999887 68 777766 33445 5999999887766655443
No 171
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.83 E-value=9.8 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 62 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~ 62 (86)
..+|++.|+++.+=.++|+.|+...||++..-+.+..++|
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~g 57 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTG 57 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSS
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCC
Confidence 3689999999999999999999999999987665544433
No 172
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.78 E-value=6.9 Score=21.95 Aligned_cols=55 Identities=7% Similarity=0.155 Sum_probs=37.3
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-Ce--eEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-GK--KKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~--KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-.++.+++..++++.++. || +|.+|.....+. |. --|+|++....+|.....
T Consensus 8 l~v~nlp~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 8 LYIRGLQPGTTDQDLVKLCQP-YG-KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEESCCTTCCHHHHHTTSTT-TS-CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 344456788999999988876 55 677777665432 21 149999998776655544
No 173
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=62.72 E-value=7.6 Score=24.92 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=37.8
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCc--eeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDIN--VAKVNTLIRPDGKK--KAYVRLARDYDALD 78 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~Vk--V~~VnT~~~~~~~K--KA~VtL~~g~~a~d 78 (86)
|+=..+.++|..+|++.|+. ||.. |.+|.....+.|.- -|||++....+|..
T Consensus 48 fVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 48 KLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp EEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 44446789999999999988 7764 77888776554432 49999987655443
No 174
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.55 E-value=14 Score=21.26 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=31.4
Q ss_pred CEEEE-EEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVF-IVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F-~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+ .|+++.|=.++|+.|+...|+++...+.+.
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 47899 599999999999999999999998887765
No 175
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=62.46 E-value=11 Score=22.52 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=38.4
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+.+..+|++.++. || +|.+|.....+. | .--|+|++....+|......+
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLP-FG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTT-SC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 34445789999999998886 66 566776654321 1 235999999887776665544
No 176
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=62.27 E-value=14 Score=20.59 Aligned_cols=33 Identities=0% Similarity=0.110 Sum_probs=30.0
Q ss_pred EEEE-EeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 26 LVFI-VHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 26 ~~F~-V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
+.+. |+++.|=.++|+.++...|+++...+...
T Consensus 16 ~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 4888 99999999999999999999998888765
No 177
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.25 E-value=10 Score=22.87 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=31.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+++.|++++|=.++|+.|+..+|+.+...+.+.
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 58899999999999999999999999998877654
No 178
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=62.16 E-value=16 Score=22.14 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=38.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.|+. || +|.+|.....+. | .--|||++....+|......
T Consensus 66 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 66 LYVGGLAEEVDDKVLHAAFIP-FG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEEECCCTTCCHHHHHHHHGG-GS-CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 445557789999999999987 66 566776654321 1 23599999987666554433
No 179
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.10 E-value=16 Score=23.08 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=32.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+..+|+.+...+.+.
T Consensus 42 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 42 EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 57899999999999999999999999998888765
No 180
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.91 E-value=12 Score=23.50 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 37 HHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 37 ~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
.++.+.+.. || .|..||...- +++|++..+++|....+
T Consensus 39 ~~L~~~F~~-~G-~Vilvr~v~d-----~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 39 TELMQTLGS-YG-TIVLVRINQG-----QMLVTFADSHSALSVLD 76 (95)
T ss_dssp HHHHHHHHH-HS-CCSEEEEETT-----EEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHH-CC-CEEEEEEecC-----cEEEEEcChHHHHHHHh
Confidence 678888888 89 7778876653 39999999998877655
No 181
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=61.64 E-value=23 Score=21.17 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=41.3
Q ss_pred cCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-C--CeeEEEEEcCCCCcHHHHH
Q psy6375 22 DNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-D--GKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 22 ~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~--~~KKA~VtL~~g~~a~d~a 80 (86)
...-|+-.++.+++..++++.|+. || .|.+|.....+ . ..--|||++....+|....
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSS-CG-SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHT-TS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 345677778999999999999987 66 67788776543 1 2346999998776654443
No 182
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.63 E-value=5.3 Score=25.12 Aligned_cols=53 Identities=8% Similarity=0.144 Sum_probs=37.2
Q ss_pred EEEEEeCC-CCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQ-ANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~-a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+=..+.+ ++..++++.++. || +|.+|.... .+| -|+|.+....+|.+....+
T Consensus 29 ~V~NLp~~~~te~~L~~lF~~-fG-~V~~v~i~~-~kg--~aFVef~~~~~A~~Ai~~l 82 (112)
T 1x4f_A 29 HLSNLPHSGYSDSAVLKLAEP-YG-KIKNYILMR-MKS--QAFIEMETREDAMAMVDHC 82 (112)
T ss_dssp EEESCCCSSCCSHHHHTTTTT-TS-CCSEEEEET-TTT--EEEEECSSHHHHHHHHHHH
T ss_pred EEeCCCCccCCHHHHHHHHHh-cC-CEEEEEEec-CCC--EEEEEECCHHHHHHHHHHh
Confidence 33345666 889999988876 77 577777653 345 4999999887776665543
No 183
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=61.44 E-value=14 Score=22.62 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+.+...+.+.
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 57899999999999999999999999998887765
No 184
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=61.40 E-value=6.2 Score=23.33 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHhCCceeeEEEeeCCC-Cee--EEEEEcCCCCcHHHHHHh
Q psy6375 33 QANKHHIKAAVKKMYDINVAKVNTLIRPD-GKK--KAYVRLARDYDALDVANK 82 (86)
Q Consensus 33 ~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~~K--KA~VtL~~g~~a~d~a~~ 82 (86)
+++..++++.++. || +|.+|+...-+. |.- =|+|++....+|......
T Consensus 23 ~~~~~~L~~~F~~-~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 23 PVLKKALTSLFSK-AG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp HHHHHHHHHHHHT-TS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 5677888888876 67 677887765443 322 399999877666554443
No 185
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=60.99 E-value=5.7 Score=26.56 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=29.5
Q ss_pred hhhhhhcCCEEEEEEe----CCCCHHHHHHHHHHHhCCceeeE
Q psy6375 16 AMKKIEDNNTLVFIVH----LQANKHHIKAAVKKMYDINVAKV 54 (86)
Q Consensus 16 s~~l~e~~n~~~F~V~----~~a~K~eIk~ave~lf~VkV~~V 54 (86)
...|+.. .+++|.|. +..+|.||++.+-++|++.+.-|
T Consensus 14 ~N~LL~R-ke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~V 55 (135)
T 3u5c_Y 14 SNPLLAR-KQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAV 55 (135)
T ss_dssp EEGGGTE-EEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGE
T ss_pred eccCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 3456664 68888774 46889999999999999986554
No 186
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=60.96 E-value=18 Score=21.27 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. || +|.+|.....+ .| .-=|+|++....+|......
T Consensus 29 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 29 LFVTSIHEEAQEDEIQEKFCD-YG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 344456788999999999987 56 46677665433 12 22599999987776655443
No 187
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=60.52 E-value=2.4 Score=27.53 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=35.2
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALD 78 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~K--KA~VtL~~g~~a~d 78 (86)
|+=.++.++|..||++.|+. || +.+|.....+.|.- -|||++....+|..
T Consensus 50 fV~nLp~~~te~dL~~~F~~-~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~ 101 (139)
T 2hgn_A 50 HMRGLPYKATENDIYNFFSP-LN--PVRVHIEIGPDGRVTGEADVEFATHEEAVA 101 (139)
T ss_dssp ECCSCCTTCCHHHHHHHHCS-CC--CSEEECCCSSSSCSSCCCEEECSHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC--CeEEEEEECCCCCCceEEEEEeCCHHHHHH
Confidence 44456789999999999987 78 34777765444322 39999987655444
No 188
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=60.44 E-value=19 Score=23.18 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-C--CeeEEEEEcCCCCcHHHHHHhh
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-D--GKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~--~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
..-|+-.++.+++..+|++.++. || +|.+|.....+ . ..--|+|++....+|......+
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAP-FG-PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGG-GS-CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHh-CC-CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHc
Confidence 34677778999999999999987 56 57777775433 1 2335999999877766655433
No 189
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=60.18 E-value=18 Score=21.34 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=36.4
Q ss_pred EEEEEEeCCC------CHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQA------NKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a------~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.++ +..++++.+.. || +|.+|.... ..| .-=|+|++....+|......+
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G-~v~~v~i~~-~~g~~~G~afV~f~~~~~A~~Ai~~l 81 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSK-FG-KITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNA 81 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGG-GS-CEEEEECCC-BTTBSCCEEEEEECSSSHHHHHHHHC
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhc-CC-CEEEEEeeC-CCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3444455666 67889988876 66 477776652 222 125999999888776655543
No 190
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=60.17 E-value=13 Score=22.17 Aligned_cols=35 Identities=6% Similarity=0.120 Sum_probs=31.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
+.+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 25 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 25 KQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 38899999999999999999999999998888764
No 191
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.15 E-value=5.2 Score=24.57 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=37.6
Q ss_pred EEEEEEeC-CCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHL-QANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~-~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+=..+. +++..|+++.++. || +|.+|..+. .+|+ |+|.+....+|.+....
T Consensus 18 l~V~nLp~~~~te~dL~~lF~~-fG-~V~~v~i~~-~kg~--aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 18 VHIMDFQRGKNLRYQLLQLVEP-FG-VISNHLILN-KINE--AFIEMATTEDAQAAVDY 71 (102)
T ss_dssp EEEESCCCSSSHHHHHHTTTGG-GS-CEEEEEECS-SSSC--EEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCcCCHHHHHHHHHh-cC-CEEEEEEEc-CCCE--EEEEECCHHHHHHHHHH
Confidence 34445666 7799999988876 77 477887654 2344 99999988777766554
No 192
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=60.00 E-value=6.9 Score=26.63 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=30.0
Q ss_pred hhhhhcCCEEEEEE-e---CCCCHHHHHHHHHHHhCCceeeEEE
Q psy6375 17 MKKIEDNNTLVFIV-H---LQANKHHIKAAVKKMYDINVAKVNT 56 (86)
Q Consensus 17 ~~l~e~~n~~~F~V-~---~~a~K~eIk~ave~lf~VkV~~VnT 56 (86)
..|+.. .+++|.| + +..+|.||++.+-++|++.+.-|-.
T Consensus 13 N~LL~R-kE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV 55 (149)
T 2xzm_P 13 NPLLSR-RQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVV 55 (149)
T ss_dssp ETTTTE-EEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEE
T ss_pred ccCcCC-EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 345554 6888865 4 4789999999999999998766644
No 193
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=59.74 E-value=11 Score=20.40 Aligned_cols=51 Identities=4% Similarity=0.123 Sum_probs=34.8
Q ss_pred EEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q psy6375 29 IVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 29 ~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~ 81 (86)
.++.+++..++++.++. ||. |.+|.....+. | .--|+|++....+|.....
T Consensus 6 nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 6 GLSPDTPEEKIREYFGG-FGE-VESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CCCSSCCHHHHHHHHHH-HSC-CSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 45788999999999998 563 56665543321 1 2259999998876655443
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=59.65 E-value=25 Score=23.92 Aligned_cols=59 Identities=8% Similarity=0.116 Sum_probs=40.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCC--ceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDI--NVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~V--kV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+=.++.+++..+|++.+..+|.- .|.+|.........-=|||++....+|......
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34555678899999999877777654 677776654322223599999987776554433
No 195
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=59.57 E-value=8.4 Score=23.57 Aligned_cols=36 Identities=3% Similarity=0.058 Sum_probs=32.4
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.|.|+++.|=.++|+.|+..+|+.+...+.+.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 368999999999999999999999999998887665
No 196
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=59.48 E-value=18 Score=23.90 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=41.5
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee-EEEEEcCCCCcHHHHHHhh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK-KAYVRLARDYDALDVANKI 83 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~K-KA~VtL~~g~~a~d~a~~~ 83 (86)
+-|+-.++.+++..++++.++. || .|.+|..+.-.++.| -|+|++....+|......|
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceECCcccccHHHHHHHHHhh-cC-CeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHh
Confidence 4566778889999999999987 66 577777765443322 4999998877766554443
No 197
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=59.45 E-value=15 Score=22.82 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=32.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 20 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 68899999999999999999999999999888764
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=58.58 E-value=31 Score=23.54 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=41.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-KKKAYVRLARDYDALDVA 80 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~-~KKA~VtL~~g~~a~d~a 80 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+++ .--|||++....+|....
T Consensus 43 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~ 98 (292)
T 2ghp_A 43 TVLVKNLPKSYNQNKVYKYFKH-CG-PIIHVDVADSLKKNFRFARIEFARYDGALAAI 98 (292)
T ss_dssp EEEEEEECTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSSSEEEEEEESSHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCCcEEEEEEECCHHHHHHHH
Confidence 4566678899999999999987 67 6888887764433 467999999776655543
No 199
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.56 E-value=7.7 Score=23.21 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=37.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCc
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYD 75 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~ 75 (86)
......+++++|=.++|.-++.+||+++.+.+......+.-.-.+.|..+..
T Consensus 23 ~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~ 74 (97)
T 1wjn_A 23 QILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQ 74 (97)
T ss_dssp CCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcc
Confidence 4677889999999999999999999999988877653211112444554433
No 200
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=58.48 E-value=24 Score=23.30 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+=..+.+++..+|++.++. || +|.+|+.+.-+. | .-=|||++....+|......
T Consensus 18 lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 18 LYVGDLHPDVTEAMLYEKFSP-AG-PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-hC-CEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 344557899999999999987 67 688888776432 2 23599999987666554443
No 201
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=58.35 E-value=19 Score=27.41 Aligned_cols=57 Identities=12% Similarity=0.300 Sum_probs=39.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~~K--KA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.++|..+|++.|.. || .|..|..+.-+ .|.. =|||++....+|......
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEV-YG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-cC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 3455667889999999999988 66 46677665432 2221 399999887766555444
No 202
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.04 E-value=14 Score=22.11 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=30.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEe
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTL 57 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~ 57 (86)
..+.+.|++++|=.++|+.|+...|+.+..-+.+
T Consensus 27 ~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 27 TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 5889999999999999999999999998877665
No 203
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.78 E-value=13 Score=22.28 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=41.6
Q ss_pred hhhcCCEEEEEEeCCCCHHHHH---HHHHHHhCCceeeEEEeeCCCC--e----eEEEEEcCCCCcHHHHHHh
Q psy6375 19 KIEDNNTLVFIVHLQANKHHIK---AAVKKMYDINVAKVNTLIRPDG--K----KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 19 l~e~~n~~~F~V~~~a~K~eIk---~ave~lf~VkV~~VnT~~~~~~--~----KKA~VtL~~g~~a~d~a~~ 82 (86)
....+.-|+-..+.+++..+++ +.++. || +|.+|.....+.. . =-|||++....+|......
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G-~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGK-FG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTT-TS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhc-cC-CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 3444567788899999999998 55554 55 5667776543321 1 2699999987776655544
No 204
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=57.66 E-value=16 Score=22.85 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=38.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. || .|.+|....-+ .| .-=|||++....+|......
T Consensus 73 l~v~nl~~~~~~~~l~~~F~~-~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 73 LKVDNLTYRTSPDTLRRVFEK-YG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp EEEESCCTTCCHHHHHHHHHH-HS-CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 445556889999999999966 67 57777665432 11 12499999987766555443
No 205
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.33 E-value=25 Score=20.17 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=36.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++..=.|. ..+-+ ....|+ |+|++....+|......+
T Consensus 22 l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~--afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 22 VYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRR--AFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTE--EEEECSSHHHHHHHHHHH
T ss_pred EEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcE--EEEEECCHHHHHHHHHHh
Confidence 44555678999999999999844443 23322 233454 999999877766555443
No 206
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.85 E-value=14 Score=21.93 Aligned_cols=53 Identities=4% Similarity=0.144 Sum_probs=37.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALD 78 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d 78 (86)
.-|+-.++.+++..+|++.|+. || .|..|.....+. | .--|||++....+|..
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYEQ-WG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHTS-SC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHH
Confidence 4566667889999999999976 66 466777765432 1 1259999987655443
No 207
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=56.58 E-value=9.4 Score=23.98 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=39.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~ 81 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|+|++....+|.....
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEK-YG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGG-GS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4666678889999999999987 66 566776654321 1 1249999987766655443
No 208
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=56.46 E-value=22 Score=21.12 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..++|.|+++.+=.++|+.++...|+.+...+.+.
T Consensus 32 ~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 67999999999999999999999999998887655
No 209
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=55.99 E-value=29 Score=21.83 Aligned_cols=56 Identities=7% Similarity=0.182 Sum_probs=40.5
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~ 81 (86)
.-|+-.++.+++..+|++.++. || +|.+|.....+. | .--|||.+....+|.....
T Consensus 15 ~l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (196)
T 1l3k_A 15 KLFIGGLSFETTDESLRSHFEQ-WG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73 (196)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh
Confidence 3556667889999999999987 66 477888776543 2 2369999987766555443
No 210
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.81 E-value=18 Score=21.08 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=31.0
Q ss_pred CEEEEEEeCC-----CCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQ-----ANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~-----a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++ +|=.++|+.|+...|+.+...+.+.
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~ 56 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF 56 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 5789999995 8999999999999999998888765
No 211
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=55.62 E-value=18 Score=24.29 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=36.7
Q ss_pred EEEEEe-CCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVH-LQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~-~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+=..+ .+++..++++.+.. || .|.+|+.+...+|+ |+|++....+|...-..|
T Consensus 8 ~V~nL~~~~~~~~~L~~~F~~-~G-~v~~v~i~~~~~g~--afV~f~~~~~A~~Ai~~l 62 (205)
T 3tyt_A 8 MVYGLDQSKMNCDRVFNVFCL-YG-NVEKVKFMKSKPGA--AMVEMADGYAVDRAITHL 62 (205)
T ss_dssp EEECCCTTTCCHHHHHHHHTT-TS-CEEEEEECTTSTTC--EEEEESSHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHHHHHHh-cC-CeEEEEEecCCCCE--EEEEECCHHHHHHHHHHh
Confidence 334455 47888888888865 66 67788776555565 999998876665544433
No 212
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=54.12 E-value=22 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=31.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEe
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTL 57 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~ 57 (86)
..++|.|++.+|=.++|+.|+.-||+++..-+..
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli 70 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV 70 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe
Confidence 6999999999999999999999999999888733
No 213
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=53.61 E-value=23 Score=22.84 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 32 LQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 32 ~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
-.+|..++++.|.. || +|.+|......+|+ .|+|.+....+|..-...
T Consensus 38 ~~vte~~L~~lFs~-yG-~V~~V~i~~~~~gf-qAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 38 YPVTLDVLHQIFSK-FG-TVLKIITFTKNNQF-QALLQYADPVSAQHAKLS 85 (130)
T ss_dssp SCCCHHHHHHHHTT-SS-CEEEEEEEEETTEE-EEEEEESCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC-cC-CEEEEEEEcCCCCc-EEEEEECCHHHHHHHHHH
Confidence 47899999887776 66 47788766544333 499999887666554443
No 214
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=53.53 E-value=20 Score=22.18 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|++++|=.++|+.++..+|+++...+.+.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~ 45 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 57899999999999999999999999998776654
No 215
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=53.11 E-value=14 Score=22.57 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=31.4
Q ss_pred CEEEEEEeC-CCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHL-QANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~-~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|++ +.|=.++|+.|+..+|+++...+.+.
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 578899998 99999999999999999998877765
No 216
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=52.81 E-value=23 Score=22.47 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+++.|+++.|=.++|+.|+...|+++..-+...
T Consensus 92 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 126 (159)
T 3rt3_B 92 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126 (159)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE
Confidence 68999999999999999999999999998877654
No 217
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=52.45 E-value=17 Score=20.25 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 35 NKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 35 ~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
+..++++.++. || +|.+|.... ..| .--|+|++....+|......
T Consensus 20 t~~~l~~~F~~-~G-~i~~v~i~~-~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 20 LKNVIHKIFSK-FG-KITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHHHT-TC-CEEEEECCC-BTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cC-CeEEEEecC-CCCcEeEEEEEEECCHHHHHHHHHH
Confidence 67888888876 66 477777552 222 12499999877666554443
No 218
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=52.17 E-value=4.9 Score=23.16 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=35.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCC--ceeeEEEeeC--CCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDI--NVAKVNTLIR--PDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~V--kV~~VnT~~~--~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-..+.+++..++++.+..+|.- .|.+|..... ..| -|+|++....+|......
T Consensus 11 l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g--~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRG--QAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTT--CEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCc--EEEEEeCCHHHHHHHHHH
Confidence 3455567899999999655555532 5666654421 124 499999887776655544
No 219
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.84 E-value=28 Score=19.83 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=34.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALD 78 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d 78 (86)
.-|+-.++.+++..++++.++. ||- |.+| ......|. =|+|++....+|..
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~-~G~-v~~v-~~~~~~g~-~afV~f~~~~~a~~ 60 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLA-FGP-VASV-VMDKDKGV-FAIVEMGDVGAREA 60 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGG-TSC-EEEE-EECSSSCC-EEEEEESSHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cCC-eEEE-EEcCCCCc-EEEEEECCHHHHHH
Confidence 3556667889999999999886 553 5566 22223343 79999987655443
No 220
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=50.57 E-value=9.8 Score=22.45 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=31.6
Q ss_pred CEEEE-EEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVF-IVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F-~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+ .|++++|=.++|+.|+...|+.+..-+.+.
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~ 52 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLG 52 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEES
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEe
Confidence 57888 999999999999999999999998888773
No 221
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=50.24 E-value=29 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.++...|+++...+...
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~ 121 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE
Confidence 58999999999999999999999999998887764
No 222
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=50.05 E-value=19 Score=22.61 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=35.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHh---CCceeeEEEeeC--CCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMY---DINVAKVNTLIR--PDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf---~VkV~~VnT~~~--~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+=..+.+++..++++.+..+| | +|.+|..... ..| -|+|++....+|......+
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G-~I~~v~i~~~~~~rG--~aFV~F~~~~~A~~Ai~~l 92 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQG-DILDIVVDLSDDNSG--KAYIVFATQESAQAFVEAF 92 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHS-CEEEEEECCCCSSCC--CEEEEESSHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCC-CeEEEEeccCCCcCC--EEEEEECCHHHHHHHHHHH
Confidence 34445667889999987665555 5 4566665432 234 4999998877666555443
No 223
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.89 E-value=17 Score=22.57 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 37 HHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 37 ~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
.++.+++.. || .|..|+...- +++|++..+++|....+
T Consensus 30 ~~L~~~F~~-~G-~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 30 DELLQQFAS-FG-EVILIRFVED-----KMWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHHT-TC-CEEEEEECSS-----SEEEEESSHHHHHHGGG
T ss_pred HHHHHHHHh-CC-CeEEEEEecC-----CEEEEECChHHHHHHHh
Confidence 677788877 88 7888876652 28999999887765544
No 224
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=48.84 E-value=31 Score=21.01 Aligned_cols=36 Identities=11% Similarity=-0.041 Sum_probs=32.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeC
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIR 59 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~ 59 (86)
..+.+.++++.|=.++|+-++..+|+++..-+....
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 468899999999999999999999999998887653
No 225
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.74 E-value=30 Score=18.58 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=39.5
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHhhC
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDVANKIG 84 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~~g 84 (86)
|+-.++.+++..++++.++. || +|.+|.....+. | .--|+|++....+|......++
T Consensus 4 ~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 4 FIGGLSWQTTQEGLREYFGQ-FG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EEESCCSSCCSHHHHHHHTT-TS-CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 44456789999999999987 55 356776655432 1 2369999998888776665443
No 226
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=48.73 E-value=25 Score=18.94 Aligned_cols=51 Identities=8% Similarity=0.103 Sum_probs=35.0
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALD 78 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d 78 (86)
|+-.++.+++..++++.++. ||- |.+|.....+. | .--|+|++....+|..
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQ-FGK-VDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 56 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHT-TSC-CSEECCCBCSSSTTSCBEEEEECSCHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 44456789999999999988 553 66776554331 2 2369999987755433
No 227
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.49 E-value=25 Score=21.88 Aligned_cols=36 Identities=6% Similarity=-0.050 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeC
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIR 59 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~ 59 (86)
.++++.|+++.|=.++|+.|+...|+++...+....
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 578999999999999999999999999998887653
No 228
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=47.18 E-value=41 Score=20.25 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhCCceeeEEEeeCC----CCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 35 NKHHIKAAVKKMYDINVAKVNTLIRP----DGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 35 ~K~eIk~ave~lf~VkV~~VnT~~~~----~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
...++++.+++ || +|.+|.....+ ...=.|||++....+|..-...|
T Consensus 26 ~~~dl~~~f~~-~G-~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 26 LEVETKEECEK-YG-KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp CHHHHHHHGGG-GS-CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cC-CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 67888888874 77 68888877643 12347999999887777665544
No 229
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=47.17 E-value=38 Score=20.77 Aligned_cols=54 Identities=7% Similarity=-0.006 Sum_probs=39.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHH---hCC------ceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKM---YDI------NVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~l---f~V------kV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
.-|+-.++.+++..++++.++.. .|+ .|.++.+.. ..| -|+|++....+|....
T Consensus 6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-~~g--~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKN--FAFLEFRSVDETTQAM 68 (172)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-TTT--EEEEEESSHHHHHHHG
T ss_pred EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-CCC--EEEEEeCCHHHHHHHH
Confidence 34566688999999999999985 265 777777754 344 5999998776655543
No 230
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.09 E-value=33 Score=20.70 Aligned_cols=47 Identities=2% Similarity=0.021 Sum_probs=37.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCC
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARD 73 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g 73 (86)
.+.+.++++.|=.++|+-++...|+++..-+.....+| +.+..|.++
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g--~~~~~L~~D 75 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGD--TCVSTMDNN 75 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETT--EEEEECCCT
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCC--cccceeCCC
Confidence 68899999999999999999999999998888764334 334456333
No 231
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=46.91 E-value=53 Score=20.82 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=38.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.|.. || .|..|....-+ .| .--|||++....+|......
T Consensus 75 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 75 LFVTSIHEEAQEDEIQEKFCD-YG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 344446789999999999987 66 67778776543 22 23599999877666554443
No 232
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.74 E-value=18 Score=21.99 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=36.2
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCc--eeeEEEeeCCCCe--eEEEEEcCCCCcHHH
Q psy6375 27 VFIVHLQANKHHIKAAVKKMYDIN--VAKVNTLIRPDGK--KKAYVRLARDYDALD 78 (86)
Q Consensus 27 ~F~V~~~a~K~eIk~ave~lf~Vk--V~~VnT~~~~~~~--KKA~VtL~~g~~a~d 78 (86)
+=.++.+++..+|++.|+. ||.- |.+|+....+.|. =-|||++....+|..
T Consensus 22 V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 22 LRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp EESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 3345778999999999887 6652 7788877655442 259999987765544
No 233
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=46.48 E-value=29 Score=20.55 Aligned_cols=27 Identities=0% Similarity=0.103 Sum_probs=22.2
Q ss_pred hcCCEE--EEEEeCCCCHHHHHHHHHHHh
Q psy6375 21 EDNNTL--VFIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 21 e~~n~~--~F~V~~~a~K~eIk~ave~lf 47 (86)
++.++| +|.++|+.+-.+++..++++=
T Consensus 41 d~~r~YE~m~Il~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 41 TTPGRYEVNIVLNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp SSTTEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cCCCceEEEEEECCCCCHHHHHHHHHHHH
Confidence 445666 799999999999999998853
No 234
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=46.46 E-value=37 Score=18.98 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=30.5
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHH---hCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKM---YDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~l---f~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+.. -|+.+...+.+.
T Consensus 16 ~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 16 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 57899999999999999999998 578888877754
No 235
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.16 E-value=24 Score=21.97 Aligned_cols=36 Identities=6% Similarity=0.271 Sum_probs=32.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
.+++.+.|+++.+=.++|+.|+.-+|+++...+.+.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~ 64 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI 64 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe
Confidence 368999999999999999999999999998877763
No 236
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.93 E-value=41 Score=19.23 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+++..++++.++..-.-.|.+|.. +.| =|+|++....+|......+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g--~afV~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 18 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRD--YAFVHFSNREDAVEAMKAL 71 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSS--EEEEEESSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCC--eEEEEeCCHHHHHHHHHHh
Confidence 34555678999999999998842246666653 345 5999998877666554433
No 237
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=45.72 E-value=35 Score=21.61 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=31.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEe
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTL 57 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~ 57 (86)
..+.+.|+++.|=.++|+.|+..+|+++..-+..
T Consensus 13 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~ 46 (159)
T 3rt3_B 13 NEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLA 46 (159)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 5899999999999999999999999999877766
No 238
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=45.64 E-value=33 Score=22.18 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+..+|+.+..-+.+.
T Consensus 31 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~ 65 (172)
T 3u30_A 31 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65 (172)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 57899999999999999999999999998776654
No 239
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=45.55 E-value=47 Score=20.22 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=38.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCC-C--eeEEEEEcCCCCcHHHH
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPD-G--KKKAYVRLARDYDALDV 79 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~-~--~KKA~VtL~~g~~a~d~ 79 (86)
.-|+-..+.+++..+|++.++. || .|.+|.....+. | .--|+|++....+|...
T Consensus 89 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFSQ-WG-TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp EEEEEEECTTCCHHHHHHHHHT-TS-CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred eEEECCCCCCCCHHHHHHHHHh-Cc-cEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 4666778899999999999987 66 577777654331 1 22699999877655443
No 240
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.35 E-value=8.1 Score=24.30 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=42.4
Q ss_pred cccccchhhhhhh---hcCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 8 KYPLTTESAMKKI---EDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 8 ~~P~~TEKs~~l~---e~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..|.++|++.++. -+.-+.+..|+|.++=.+|--+|..-.++.+..+-.+.
T Consensus 2 ~~~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~ 55 (91)
T 2daj_A 2 SSGSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLK 55 (91)
T ss_dssp CCCSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEES
T ss_pred CCCCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEec
Confidence 3688999998874 23457889999999999999999999999998876654
No 241
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=50.98 E-value=4.5 Score=22.60 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=30.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.++...|+++...+...
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 46789999999999999999999999988776643
No 242
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.77 E-value=16 Score=21.56 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=33.7
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCee--EEEEEcCCCCcHHHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKK--KAYVRLARDYDALDVA 80 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~K--KA~VtL~~g~~a~d~a 80 (86)
|+=.++.+++..+|++.++. ||.-...|.......|.- -|||++....+|....
T Consensus 19 ~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 19 RLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp EEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHH
Confidence 34445789999999999887 554332355443333321 4999998776654443
No 243
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=43.75 E-value=47 Score=20.51 Aligned_cols=36 Identities=6% Similarity=-0.075 Sum_probs=32.9
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
.+++++.|+++.|=.++|+.|+.-.|+++...+...
T Consensus 31 Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif 66 (93)
T 3plu_A 31 GKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK 66 (93)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe
Confidence 369999999999999999999999999999887755
No 244
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=43.52 E-value=32 Score=20.89 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=28.7
Q ss_pred CCEEEEEEe-CCCCHHHHHHHHHHHhCCceeeEEE
Q psy6375 23 NNTLVFIVH-LQANKHHIKAAVKKMYDINVAKVNT 56 (86)
Q Consensus 23 ~n~~~F~V~-~~a~K~eIk~ave~lf~VkV~~VnT 56 (86)
.++..+.|+ +++|=.++|+.|+..+|+.+..-+.
T Consensus 16 ~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL 50 (107)
T 1wf9_A 16 DGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTL 50 (107)
T ss_dssp SCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEE
Confidence 467788999 9999999999999999998765433
No 245
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=43.14 E-value=14 Score=22.76 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCee--EEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGKK--KAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~~K--KA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-..+.+++..++++.|+..=.|.-.+|+.+.-+ .|.- =|||++... +|......+
T Consensus 26 lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l 86 (131)
T 2m2b_A 26 IILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQIL 86 (131)
T ss_dssp EEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 455567789999999999987444433336666543 2211 399999987 766655443
No 246
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=43.00 E-value=6.6 Score=23.95 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=31.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.+.|+++.|=.++|+.|+..+|+.+...+.+.
T Consensus 37 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 37 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 357788999999999999999999999998876654
No 247
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.94 E-value=32 Score=20.52 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=30.7
Q ss_pred CEE-EEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTL-VFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~-~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+ .+.|++++|=.++|+.|+...|+.+..-+.+.
T Consensus 17 ~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred EEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 578 59999999999999999999999988776653
No 248
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.27 E-value=13 Score=22.29 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=34.4
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCe--eEEEEEcCCCCcHHH
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGK--KKAYVRLARDYDALD 78 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~--KKA~VtL~~g~~a~d 78 (86)
|+-.++.+++..+|++.|+. ||.-..+|.....+.|. --|||++....+|..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~ 72 (114)
T 2cpy_A 19 HITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 72 (114)
T ss_dssp EEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHH
T ss_pred EEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHH
Confidence 33446789999999999988 46432567665543331 249999987655443
No 249
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=42.15 E-value=74 Score=21.12 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=42.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC-eeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG-KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~-~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+...+.++|-.++++.++..=.|.+.+|......++ .--|+|.+....+|..-...|
T Consensus 126 l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~l 185 (205)
T 3tyt_A 126 LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFL 185 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHh
Confidence 67788999999999999999943444577777654332 246999998776665544433
No 250
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.13 E-value=41 Score=21.81 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=33.0
Q ss_pred cCCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 22 DNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 22 ~~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...++++.++++++=.++|+.+...|++++...+...
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy 61 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY 61 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE
Confidence 3468999999999999999999999999998888654
No 251
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.07 E-value=18 Score=20.64 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.3
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
|-|+++++..+||++..++-
T Consensus 13 Lgv~~~a~~~~Ik~ayr~l~ 32 (79)
T 2dn9_A 13 LGVPRNASQKEIKKAYYQLA 32 (79)
T ss_dssp HTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 34678999999999988763
No 252
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.96 E-value=18 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.0
Q ss_pred EEeCCCCHHHHHHHHHHHh
Q psy6375 29 IVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 29 ~V~~~a~K~eIk~ave~lf 47 (86)
-|+++|+..|||+|..++-
T Consensus 14 gv~~~as~~eIk~ayr~l~ 32 (78)
T 2ctp_A 14 GVSRGASDEDLKKAYRRLA 32 (78)
T ss_dssp TCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 4678899999999998864
No 253
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.94 E-value=21 Score=20.52 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=35.6
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
.-|+-.++.+++..+|++.++.. ..|..+..+ .+ .--|||++....+|......
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~-----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFDGS-----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 73 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTSTTC-----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEeCCCCccCHHHHHHHhcCC-----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 45666678899999998877742 356555433 22 23599999977666555443
No 254
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.93 E-value=27 Score=21.10 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=31.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+.+...+.+.
T Consensus 34 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 57889999999999999999999999998887765
No 255
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=40.57 E-value=74 Score=21.46 Aligned_cols=56 Identities=7% Similarity=0.126 Sum_probs=38.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CCe--eEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DGK--KKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~~--KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-..+.+++..+|++.++. ||- |.++.....+ .|. --|+|++....+|......
T Consensus 98 l~v~nlp~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 98 LCVANLPPSLTQQQFEELVRP-FGS-LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEcCCCCcCCHHHHHHHHHh-cCC-eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 344446788999999999988 664 7777776543 232 2499999987776655444
No 256
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=40.33 E-value=36 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=31.7
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 11 k~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (169)
T 3l0w_B 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (169)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 58899999999999999999999999998887654
No 257
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=40.04 E-value=34 Score=20.55 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHhCCceeeEEEeeCCC-----CeeEEEEEcCCCCcHHHHHHhh
Q psy6375 35 NKHHIKAAVKKMYDINVAKVNTLIRPD-----GKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 35 ~K~eIk~ave~lf~VkV~~VnT~~~~~-----~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
.+.++++.+++ || +|.+|.....+. +.=.|||++....+|..-...|
T Consensus 28 ~~~dl~~~f~k-~G-~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 28 IVEDVRDECSK-YG-LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp HHHHHHHHHHT-TS-CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-cC-CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 45667777765 67 677887665332 2337999999887776655544
No 258
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=39.87 E-value=19 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.7
Q ss_pred EEeCCCCHHHHHHHHHHHh
Q psy6375 29 IVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 29 ~V~~~a~K~eIk~ave~lf 47 (86)
-|+++|+..+||+|..++-
T Consensus 10 gv~~~as~~~Ik~ayr~l~ 28 (77)
T 1hdj_A 10 GLARGASDEEIKRAYRRQA 28 (77)
T ss_dssp TCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 3677899999999988763
No 259
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=39.57 E-value=73 Score=21.46 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=39.3
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
-|+-.++.+.+..+|++.++. || .|.+|.......| -|+|++....+|......|
T Consensus 210 l~v~nl~~~~~~~~l~~~F~~-~G-~i~~v~~~~~~~g--~afV~f~~~~~A~~A~~~l 264 (282)
T 3pgw_A 210 LFLTNLPEETNELMLSMLFNQ-FP-GFKEVRLVPGRHD--IAFVEFDNEVQAGAARDAL 264 (282)
T ss_pred EEEeCCCCcCCHHHHHHHHHh-cC-CeEEEEEecCCCc--EEEEEeCCHHHHHHHHHHc
Confidence 455567789999999999987 44 5667766643334 6999999887766655443
No 260
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=39.39 E-value=11 Score=22.45 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=35.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCc--eeeEEEeeCCCCe--eEEEEEcCCCCcHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDIN--VAKVNTLIRPDGK--KKAYVRLARDYDALD 78 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~Vk--V~~VnT~~~~~~~--KKA~VtL~~g~~a~d 78 (86)
-|+-.++.+++..+|++.++. ||.- |.+|....-+.|. =-|||++....+|..
T Consensus 14 l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 14 IRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQK 70 (107)
T ss_dssp EEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHH
Confidence 344556789999999998886 4432 6677766544321 149999987655443
No 261
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.31 E-value=44 Score=19.56 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=30.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHH---hCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKM---YDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~l---f~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+.. -|+++...+.+.
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 57899999999999999999999 468888877754
No 262
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.03 E-value=17 Score=22.71 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCcee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVA 52 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~ 52 (86)
...+.+.|++++|=.++|++|+..+++.+.
T Consensus 17 g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~ 46 (105)
T 1v2y_A 17 GEVMPVVVVQNATVLDLKKAIQRYVQLKQE 46 (105)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 368999999999999999999999988763
No 263
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.77 E-value=35 Score=20.09 Aligned_cols=35 Identities=3% Similarity=-0.145 Sum_probs=31.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeC
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIR 59 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~ 59 (86)
.+.+.|+++.|=.++|+.++...|+++..-+....
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 58899999999999999999999999988776653
No 264
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.76 E-value=23 Score=20.41 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=33.3
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. || .|.......| .--|||++....+|......
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~-~g----~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 18 LVLSNLSYSATEETLQEVFEK-AT----FIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 72 (101)
T ss_dssp EEEESCCTTCCHHHHHHHCSS-CS----EEECCBCSSSCBCSEEEEECSSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-CC----EEEEEECCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 344456788999999998887 43 3333322221 23699999977766655443
No 265
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=38.49 E-value=21 Score=20.11 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.0
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q psy6375 28 FIVHLQANKHHIKAAVKKM 46 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~l 46 (86)
+-|+++++..+||++..++
T Consensus 14 Lgl~~~a~~~eIk~ayr~l 32 (73)
T 2och_A 14 LGVKPDASDNELKKAYRKM 32 (73)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 4577899999999998875
No 266
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=38.30 E-value=35 Score=19.17 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=34.9
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..+|++.++. ||. |..+..+..+ .| .--|+|++....+|......
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 18 IKVQNMPFTVSIDEILDFFYG-YQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp EEEECCCTTCCHHHHHHHTTT-SCB-CTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCC-ccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 344445789999999999887 443 3334333322 22 23499999987766555443
No 267
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.17 E-value=21 Score=20.47 Aligned_cols=20 Identities=35% Similarity=0.311 Sum_probs=16.6
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
|-|+++++..|||+|..++-
T Consensus 15 Lgv~~~as~~eIk~ayr~l~ 34 (82)
T 2ej7_A 15 LDVPRQASSEAIKKAYRKLA 34 (82)
T ss_dssp TTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 34678999999999998874
No 268
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=37.47 E-value=21 Score=20.91 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=16.1
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q psy6375 28 FIVHLQANKHHIKAAVKKM 46 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~l 46 (86)
+-|+++|+..|||++..++
T Consensus 23 Lgv~~~as~~eIk~ayr~l 41 (88)
T 2cug_A 23 LGVSRTASQADIKKAYKKL 41 (88)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCcCCCCCHHHHHHHHHHH
Confidence 4467899999999998876
No 269
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.29 E-value=55 Score=19.05 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=36.7
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCcee--------eEEEeeCCC-C--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVA--------KVNTLIRPD-G--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~--------~VnT~~~~~-~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..++++.++. ||. |. .|....-+. | .--|||++....+|......
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 18 IYVQGLNDSVTLDDLADFFKQ-CGV-VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp EEEECCCTTCCHHHHHHHHTT-TSC-BCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-EeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 445556789999999999988 453 33 355554321 2 22599999987776655443
No 270
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.12 E-value=21 Score=21.43 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=16.4
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
+-|+++|+..|||+|..++-
T Consensus 23 Lgv~~~as~~eIk~ayr~l~ 42 (99)
T 2yua_A 23 LGVPSTATQAQIKAAYYRQC 42 (99)
T ss_dssp HTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 44678999999999987753
No 271
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=36.18 E-value=57 Score=18.56 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=35.3
Q ss_pred EEEEEeC-CCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHL-QANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~-~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++. +++..++++.++. || +|.+|... .| -|+|++....+|......+
T Consensus 14 ~V~nlp~~~~t~~~l~~~F~~-~G-~v~~v~i~---~g--~afV~f~~~~~A~~A~~~l 65 (96)
T 2kvi_A 14 FIGNLPLKNVSKEDLFRIFSP-YG-HIMQINIK---NA--FGFIQFDNPQSVRDAIECE 65 (96)
T ss_dssp EEESSTTSCCCHHHHHHHHTT-TC-CCCEEEEE---TT--EEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHHHHHHh-cC-CEEEEEEe---CC--EEEEEECCHHHHHHHHHHc
Confidence 3444565 8899999999987 55 35555552 55 5999999877766655543
No 272
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.17 E-value=23 Score=20.76 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=15.6
Q ss_pred EEeCCCCHHHHHHHHHHHh
Q psy6375 29 IVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 29 ~V~~~a~K~eIk~ave~lf 47 (86)
-|+++|+..|||++..++-
T Consensus 14 gv~~~as~~eIk~ayr~l~ 32 (88)
T 2ctr_A 14 GVPKSASERQIKKAFHKLA 32 (88)
T ss_dssp TCCTTCCHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHH
Confidence 4678899999999987763
No 273
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=36.14 E-value=25 Score=20.59 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHh-CCce
Q psy6375 33 QANKHHIKAAVKKMY-DINV 51 (86)
Q Consensus 33 ~a~K~eIk~ave~lf-~VkV 51 (86)
.+|+.+|++.+|..| |+..
T Consensus 32 tvT~K~VR~~Le~~~pg~dL 51 (70)
T 1q1v_A 32 EVTMKQICKKVYENYPTYDL 51 (70)
T ss_dssp GCCHHHHHHHHHHHCSSSCC
T ss_pred HHhHHHHHHHHHHHccCCCC
Confidence 578999999999999 8764
No 274
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=36.09 E-value=21 Score=20.99 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.6
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
+-|+++|+..|||+|..++-
T Consensus 22 Lgv~~~as~~eIk~aYr~l~ 41 (94)
T 1wjz_A 22 LGADPSANMSDLKQKYQKLI 41 (94)
T ss_dssp TTCCTTCCHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 45778999999999988753
No 275
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=36.06 E-value=52 Score=20.42 Aligned_cols=35 Identities=6% Similarity=0.002 Sum_probs=31.5
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeC
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIR 59 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~ 59 (86)
.+.+.++++.|=.++|+.|+..+|+++..-+....
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 58889999999999999999999999988887653
No 276
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=35.47 E-value=24 Score=20.92 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.8
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q psy6375 28 FIVHLQANKHHIKAAVKKM 46 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~l 46 (86)
+-|+++|+..|||++..++
T Consensus 14 Lgv~~~as~~eIk~ayr~l 32 (92)
T 2o37_A 14 LGVSPSANEQELKKGYRKA 32 (92)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 4467899999999998775
No 277
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.69 E-value=25 Score=20.83 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.0
Q ss_pred EEEEeCCCCHHHHHHHHHHH
Q psy6375 27 VFIVHLQANKHHIKAAVKKM 46 (86)
Q Consensus 27 ~F~V~~~a~K~eIk~ave~l 46 (86)
++-|+++|+..|||+|..++
T Consensus 32 iLgv~~~as~~eIk~aYr~l 51 (90)
T 2ys8_A 32 MLGVKPGASRDEVNKAYRKL 51 (90)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHHH
Confidence 35688999999999998775
No 278
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=34.33 E-value=41 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=31.4
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+++.|+++.|=.++|+.|+...|+++...+.+.
T Consensus 116 kt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~ 150 (189)
T 3q3f_A 116 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150 (189)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE
Confidence 58999999999999999999999999998776654
No 279
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=33.69 E-value=22 Score=20.41 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHhCC
Q psy6375 34 ANKHHIKAAVKKMYDI 49 (86)
Q Consensus 34 a~K~eIk~ave~lf~V 49 (86)
+++.+|+++..++|..
T Consensus 19 a~~~~Ik~~yr~Lm~~ 34 (65)
T 2guz_B 19 LNMDKINNRFNYLFEV 34 (65)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999999853
No 280
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=33.27 E-value=75 Score=18.62 Aligned_cols=36 Identities=11% Similarity=-0.043 Sum_probs=31.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeC
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIR 59 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~ 59 (86)
..+.-++++..|=.++|+-++..+|+++..-+....
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 455678999999999999999999999999988754
No 281
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=32.89 E-value=25 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=16.1
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
+-|+++|+..|||+|..++-
T Consensus 8 Lgv~~~as~~eIk~aYr~la 27 (99)
T 2lgw_A 8 LDVPRSASADDIKKAYRRKA 27 (99)
T ss_dssp SSSCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 34678999999999988763
No 282
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=32.21 E-value=48 Score=20.50 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCceeeEEEeeCCC-------CeeEEEEEcCCCCcHHHHHHhh
Q psy6375 36 KHHIKAAVKKMYDINVAKVNTLIRPD-------GKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 36 K~eIk~ave~lf~VkV~~VnT~~~~~-------~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
..+|++.+++ || +|.+|.....+. +.=.+||++....+|..-...|
T Consensus 39 eedl~eef~k-~G-~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 39 EGEVTEECGK-FG-AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp HHHHHHHHTT-TS-CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cC-CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 4566666654 56 677887765432 1247999999877776655544
No 283
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.10 E-value=28 Score=21.33 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.2
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
+-|+++|+..|||+|..++-
T Consensus 23 Lgv~~~as~~eIk~aYr~la 42 (109)
T 2ctw_A 23 LGLDKNATSDDIKKSYRKLA 42 (109)
T ss_dssp HTCCTTCCHHHHHHHHHHHH
T ss_pred cCcCCCCCHHHHHHHHHHHH
Confidence 34678999999999988753
No 284
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.34 E-value=53 Score=18.99 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=29.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHh--CCceeeEEEee
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMY--DINVAKVNTLI 58 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf--~VkV~~VnT~~ 58 (86)
.+.+.|+++.|=.++|+.|+..+ |+.+...+.+.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~ 56 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY 56 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE
Confidence 56667779999999999999999 99988877664
No 285
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=31.11 E-value=64 Score=20.75 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.4
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
...+.+.|+++.|=.++|+.|+...|+++..-+...
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 141 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 141 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE
Confidence 368999999999999999999999999987766554
No 286
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.95 E-value=21 Score=21.06 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=16.1
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
|-|+++++..|||++..++-
T Consensus 15 Lgv~~~as~~eIk~ayr~l~ 34 (92)
T 2dmx_A 15 LGVQASASPEDIKKAYRKLA 34 (92)
T ss_dssp HTCCTTCCTTHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 34678899999999988763
No 287
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=30.42 E-value=93 Score=18.81 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=26.6
Q ss_pred EEEEEEeCCCCHHHHHHHHHHH------hCCceeeEEEe
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKM------YDINVAKVNTL 57 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~l------f~VkV~~VnT~ 57 (86)
-.+|.++|+.+..+++..++++ .|-.|.++...
T Consensus 5 E~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~w 43 (101)
T 1cqm_A 5 EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAIL 43 (101)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 4579999999999999888876 47778777653
No 288
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.39 E-value=30 Score=21.22 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=16.7
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
+-|+++|+..|||+|..++-
T Consensus 26 Lgv~~~as~~eIk~ayr~l~ 45 (112)
T 2ctq_A 26 LGCDELSSVEQILAEFKVRA 45 (112)
T ss_dssp TTCCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHH
Confidence 45788999999999988763
No 289
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=30.27 E-value=30 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.2
Q ss_pred EEEeCCCCHHHHHHHHHHHh
Q psy6375 28 FIVHLQANKHHIKAAVKKMY 47 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf 47 (86)
+-|+++|+..|||++..++-
T Consensus 9 Lgv~~~as~~eIk~ayr~l~ 28 (103)
T 1bq0_A 9 LGVSKTAEEREIRKAYKRLA 28 (103)
T ss_dssp TSSCSSCCHHHHHHHHHHHH
T ss_pred cCcCCCCCHHHHHHHHHHHH
Confidence 34677899999999988764
No 290
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.00 E-value=45 Score=20.06 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=32.1
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceee-EEEeeCCCCe--eEEEEEcCCCCcHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAK-VNTLIRPDGK--KKAYVRLARDYDALD 78 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~-VnT~~~~~~~--KKA~VtL~~g~~a~d 78 (86)
-|+=.++.+++..+|++.|+. ||. |.. +.......|. -=|||++....+|..
T Consensus 28 l~V~nLp~~~te~~l~~~F~~-~G~-v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~ 82 (124)
T 1wel_A 28 VYLKGLPFEAENKHVIDFFKK-LDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKA 82 (124)
T ss_dssp EEEECCCTTCCHHHHHHHSCS-SCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCC-ccceEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 344445789999999998876 553 333 2222223332 249999997765443
No 291
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.89 E-value=59 Score=18.32 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=34.5
Q ss_pred EEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeC-CCC--eeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIR-PDG--KKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~-~~~--~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+-.++.+++..+|++.++. ||. |..+..+.. ..| .--|+|++....+|......+
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~-~G~-v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFYG-YQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp EEESCCTTCCHHHHHHHTTT-SCC-CTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHH-cCC-ccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 34445789999999999887 443 223333322 222 235999999877666555443
No 292
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=29.75 E-value=22 Score=22.19 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=35.4
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhC---CceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYD---INVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~---VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
-|+-..+.+++..++++.++..+. +.+....+- ...| -|||++....+|....
T Consensus 16 l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~-~~~g--~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 16 LFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRK--FGYVDFESAEDLEKAL 71 (175)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTT--EEEEEESSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCC-cccc--EEEEEECCHHHHHHHH
Confidence 344456889999999999998764 344444332 2334 5999998776655443
No 293
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog, protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A* 1qps_A 1qrh_A 1qri_A
Probab=29.17 E-value=41 Score=24.80 Aligned_cols=55 Identities=25% Similarity=0.209 Sum_probs=39.1
Q ss_pred hhhhcCCEEEEEEeCCCCHHHHHHHHHHHhCCc--eeeE-EEeeCCC-----------CeeEEEEEcCC
Q psy6375 18 KKIEDNNTLVFIVHLQANKHHIKAAVKKMYDIN--VAKV-NTLIRPD-----------GKKKAYVRLAR 72 (86)
Q Consensus 18 ~l~e~~n~~~F~V~~~a~K~eIk~ave~lf~Vk--V~~V-nT~~~~~-----------~~KKA~VtL~~ 72 (86)
+|-++..+++|.-..+..|.+|..++.++|.-- -.-| |+.+.|+ .|+-..|+=++
T Consensus 44 ~Le~~Fp~Lsf~~r~si~k~eIn~~Lrk~d~~lg~tlFv~nssIkPDGGIievkdd~g~wRviLVSEaK 112 (276)
T 1cl8_A 44 ALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAK 112 (276)
T ss_dssp HHHHHCTTSCEEEESCEEHHHHHHHHHHHCTTSSCCCSSTTCEECCTTCEEEEECTTSCEEEEEEEEEE
T ss_pred HHHHhccCceEeehhhhhHHHHHHHHHhhCcccccccccccccccCCCcEEEEEcCCCCEEEEEEehhh
Confidence 344556789999999999999999999999632 2233 6666664 37766665443
No 294
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=29.02 E-value=42 Score=19.90 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=30.5
Q ss_pred CEEEEEEe--CCCCHHHHHHHH-HHHhCCceeeEEEee
Q psy6375 24 NTLVFIVH--LQANKHHIKAAV-KKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~--~~a~K~eIk~av-e~lf~VkV~~VnT~~ 58 (86)
.++++.|+ ++.|=.++|+.| +...|+++...+.+.
T Consensus 12 ~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 49 (87)
T 2lxa_A 12 PKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL 49 (87)
T ss_dssp SCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE
T ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE
Confidence 56888766 999999999999 999999998887765
No 295
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A
Probab=28.88 E-value=36 Score=25.44 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.5
Q ss_pred eCCCCHHHHHHHHHHHhCCc
Q psy6375 31 HLQANKHHIKAAVKKMYDIN 50 (86)
Q Consensus 31 ~~~a~K~eIk~ave~lf~Vk 50 (86)
+|..||.||.+.++..||++
T Consensus 165 NP~lsk~eiE~~L~~~LGv~ 184 (330)
T 3hvm_A 165 NPHLNQNGIETMLKKELGAK 184 (330)
T ss_dssp STTSCHHHHHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999984
No 296
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=28.40 E-value=12 Score=23.53 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEe
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTL 57 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~ 57 (86)
..+.+.|+++.|=.++|+.|+..+|+++...+.+
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi 44 (128)
T 3u5e_m 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 44 (128)
T ss_dssp ----------------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE
Confidence 5788999999999999999999999999877654
No 297
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=28.23 E-value=34 Score=20.51 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.1
Q ss_pred EEEEEcCCCC--cHHHHHHhhCC
Q psy6375 65 KAYVRLARDY--DALDVANKIGI 85 (86)
Q Consensus 65 KA~VtL~~g~--~a~d~a~~~g~ 85 (86)
+|+-.|.+|+ .|.++|.+||+
T Consensus 19 ~~i~~L~~~~~~Ta~~IAkkLg~ 41 (75)
T 1sfu_A 19 KEVLSLNTNDYTTAISLSNRLKI 41 (75)
T ss_dssp HHHHTSCTTCEECHHHHHHHTTC
T ss_pred HHHHhCCCCcchHHHHHHHHHCC
Confidence 3344466665 78999999996
No 298
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=27.77 E-value=41 Score=20.95 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=19.6
Q ss_pred EEEeCCCCHHHHHHHHHHHhCC
Q psy6375 28 FIVHLQANKHHIKAAVKKMYDI 49 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~lf~V 49 (86)
+.+.++++|.|+-.+|.+.|.-
T Consensus 41 L~~~~~~sK~qLa~aV~kHF~s 62 (94)
T 2ld7_A 41 LPTRPGLNKAQLVEIVGCHFKS 62 (94)
T ss_dssp CCCCSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHc
Confidence 4688899999999999999964
No 299
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.40 E-value=1.1e+02 Score=19.01 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=36.1
Q ss_pred EEEEEeCCCCHHHHHHHHHHHh---CCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 26 LVFIVHLQANKHHIKAAVKKMY---DINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 26 ~~F~V~~~a~K~eIk~ave~lf---~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
|+=..+-+++..++|+.+..+| |=+|.+| | +| -|||++....+|..-..+|
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-t----gG--~AfV~F~~~esA~~A~~~l 66 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-T----GC--SAILRFINQDSAERAQKRM 66 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-C----TT--CEEEEESSHHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-e----cC--EEEEEECCHHHHHHHHHHh
Confidence 3445566888999999888887 3478888 2 35 6999998777665554443
No 300
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=27.10 E-value=61 Score=23.76 Aligned_cols=35 Identities=6% Similarity=0.008 Sum_probs=32.1
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
.+|++.|++++|=.++|+.|+...||++..-+.+.
T Consensus 15 ~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 15 KEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 58999999999999999999999999998887773
No 301
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=26.58 E-value=46 Score=22.40 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHhCCc
Q psy6375 32 LQANKHHIKAAVKKMYDIN 50 (86)
Q Consensus 32 ~~a~K~eIk~ave~lf~Vk 50 (86)
-+|+|.|+..++..+++.+
T Consensus 118 G~A~K~QV~~mV~~lL~l~ 136 (166)
T 4ep4_A 118 GHAAKEEVALMVRGILGLK 136 (166)
T ss_dssp TTCCHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHhcCC
Confidence 3899999999999999885
No 302
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.57 E-value=92 Score=17.50 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCcee-eEEEeeCC-CC--eeEEEEEcCCCCcHHHHHHh
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVA-KVNTLIRP-DG--KKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~-~VnT~~~~-~~--~KKA~VtL~~g~~a~d~a~~ 82 (86)
-|+-.++.+++..++++.++. || +|. +|.....+ .| .-=|||++....+|......
T Consensus 12 l~V~nLp~~~t~~~l~~~F~~-~G-~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 12 LWMGDLEPYMDENFISRAFAT-MG-ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp EEECSCCTTCCHHHHHHHHHH-TT-CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHH-hC-CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 455557889999999999988 55 334 67666543 22 12499999977766655443
No 303
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=26.33 E-value=1.5e+02 Score=19.75 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=36.8
Q ss_pred EEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 29 IVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 29 ~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
..+.+++..++++.|+. || +|.+|.+..... .--|+|.+....+|.+-...|
T Consensus 53 NL~~~vted~L~~~Fs~-fG-~V~~V~i~~k~~-rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 53 NLFYPVTLDVLHQIFSK-FG-TVLKIITFTKNN-QFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp SCCSCCCHHHHHHHHHH-HS-CEEEEEEEESSS-CEEEEEEESCHHHHHHHHHHS
T ss_pred CcCCCCCHHHHHHHHHh-cC-CEEEEEEEeCCC-CCEEEEEECCHHHHHHHHHHh
Confidence 34568999999999987 56 577888754321 126999998877776655544
No 304
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=26.23 E-value=1.4e+02 Score=19.64 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=37.2
Q ss_pred CEEEEEE----eCCCCHHHHHHHHHHHhCCceeeEEEeeCCCC---eeEEEEEcCC
Q psy6375 24 NTLVFIV----HLQANKHHIKAAVKKMYDINVAKVNTLIRPDG---KKKAYVRLAR 72 (86)
Q Consensus 24 n~~~F~V----~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~---~KKA~VtL~~ 72 (86)
+-|+.-. ++..+-.+|+.+|.. || .|.+++...-|.. .==++|++..
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~-fG-eV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKK-YG-EISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHT-TS-CCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCceeeEEEEEECC
Confidence 3567777 899999999999995 99 9999999886641 2248899983
No 305
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=25.95 E-value=44 Score=25.52 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.5
Q ss_pred eCCCCHHHHHHHHHHHhCCc
Q psy6375 31 HLQANKHHIKAAVKKMYDIN 50 (86)
Q Consensus 31 ~~~a~K~eIk~ave~lf~Vk 50 (86)
+|..||.||.+.++..||++
T Consensus 187 NP~lsk~eIE~~L~~~LGv~ 206 (383)
T 3h7c_X 187 NPHMSKEQIEEELKKYLGVQ 206 (383)
T ss_dssp CTTSCHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHhCCc
Confidence 68999999999999999984
No 306
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.75 E-value=33 Score=20.44 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEeeC--------CCCeeEEEEEcCCCCcHHHHHHh
Q psy6375 23 NNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIR--------PDGKKKAYVRLARDYDALDVANK 82 (86)
Q Consensus 23 ~n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~--------~~~~KKA~VtL~~g~~a~d~a~~ 82 (86)
..-|+-.++.+++..++++.++. ||- |. +..... ..| =|+|++....+|......
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~-~G~-i~-~~~~~~~~~~~~g~~~G--~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRR-FGP-LV-VDWPHKAESKSYFPPKG--YAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTT-TCC-CC-EECTTSSSSCCCSCTTS--EEEECCSSHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCHHHHHHHHHh-cCC-EE-EEEeecCCCCCCCCccc--EEEEEECCHHHHHHHHHh
Confidence 35667778899999999999987 552 22 333321 124 399999987765554443
No 307
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.74 E-value=46 Score=18.76 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.9
Q ss_pred EeC-CCCHHHHHHHHHHHh
Q psy6375 30 VHL-QANKHHIKAAVKKMY 47 (86)
Q Consensus 30 V~~-~a~K~eIk~ave~lf 47 (86)
|++ +++..|||++..++.
T Consensus 22 l~~~~a~~~eIk~ayr~l~ 40 (71)
T 2guz_A 22 LTENTLTKKKLKEVHRKIM 40 (71)
T ss_dssp CCTTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 566 699999999988764
No 308
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=25.45 E-value=27 Score=20.94 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=14.8
Q ss_pred EeCCCCHHHHHHHHHHH
Q psy6375 30 VHLQANKHHIKAAVKKM 46 (86)
Q Consensus 30 V~~~a~K~eIk~ave~l 46 (86)
|+++|+..|||+|..++
T Consensus 24 v~~~as~~eIKkaYrkl 40 (88)
T 1iur_A 24 QAWKLPESERKKIIRRL 40 (88)
T ss_dssp HTTSSCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 57899999999998876
No 309
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.78 E-value=95 Score=17.27 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=36.8
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHhCCceeeE-EEeeCC-CC--eeEEEEEcCCCCcHHHHHH
Q psy6375 25 TLVFIVHLQANKHHIKAAVKKMYDINVAKV-NTLIRP-DG--KKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 25 ~~~F~V~~~a~K~eIk~ave~lf~VkV~~V-nT~~~~-~~--~KKA~VtL~~g~~a~d~a~ 81 (86)
-|+-.++.+++..+|++.++. ||. |.+| .....+ .| .--|+|++....+|.....
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~-~G~-i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 8 IFIGNLDPEIDEKLLYDTFSA-FGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TSC-BSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cCC-eeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 344556788999999999998 553 5556 555432 11 2259999998776655544
No 310
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=24.69 E-value=1.3e+02 Score=19.21 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=30.9
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
-++.+.|+++.|=.++|+.|+...|+.+..-+.+.
T Consensus 12 tTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~ 46 (118)
T 4ajy_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK 46 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe
Confidence 36778999999999999999999999998877653
No 311
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=24.37 E-value=51 Score=21.49 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=43.0
Q ss_pred CEEE-EEEeCCCCHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHH
Q psy6375 24 NTLV-FIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVA 80 (86)
Q Consensus 24 n~~~-F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a 80 (86)
+.+. |-++-..|+.+|+.-++..-.++.-.++-+...+++.=|+|.+.....|-..+
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKas 79 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKML 79 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHH
Confidence 4444 66788899999999999987887776666665677788999998765554444
No 312
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=24.13 E-value=54 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHhCCc
Q psy6375 33 QANKHHIKAAVKKMYDIN 50 (86)
Q Consensus 33 ~a~K~eIk~ave~lf~Vk 50 (86)
+|+|.|+..++..+++.+
T Consensus 115 ~A~K~qV~~mv~~ll~l~ 132 (158)
T 1hjr_A 115 SAEKSQVQHMVRTLLKLP 132 (158)
T ss_dssp SCCHHHHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHHcCCC
Confidence 899999999999999975
No 313
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=23.96 E-value=76 Score=22.56 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=25.2
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
|-..-.|+|++++.+++. ++.+++|+| ..-|.|
T Consensus 155 nn~G~LVhP~~s~ee~~~-i~d~L~V~v-~~gTvN 187 (224)
T 1g62_A 155 SNQGGLVHPQTSVQDQEE-LSSLLQVPL-VAGTVN 187 (224)
T ss_dssp CSSCEEECTTCCHHHHHH-HHHHHTSCE-EECCBT
T ss_pred eCcEEEECCCCCHHHHHH-HHHHhCCcE-EEEEEc
Confidence 335567999999988864 799999997 445654
No 314
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=23.79 E-value=49 Score=19.21 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhCC
Q psy6375 32 LQANKHHIKAAVKKMYDI 49 (86)
Q Consensus 32 ~~a~K~eIk~ave~lf~V 49 (86)
.+.|+.+|++++++..+.
T Consensus 19 ~n~Te~~I~~~L~~vC~~ 36 (74)
T 1l9l_A 19 DKPTQRSVSNAATRVCRT 36 (74)
T ss_dssp SSCCHHHHHHHHHHGGGS
T ss_pred cccCHHHHHHHHHHHHHh
Confidence 478999999999987654
No 315
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=23.62 E-value=1.4e+02 Score=19.54 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=20.2
Q ss_pred HhCCceeeEEEeeCCCCeeEEEEEcCCCCcH
Q psy6375 46 MYDINVAKVNTLIRPDGKKKAYVRLARDYDA 76 (86)
Q Consensus 46 lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a 76 (86)
++=.+|.+|++... .|.+.|+|.+++.+-.
T Consensus 86 LsPA~V~~V~i~~~-~~~~~~~V~V~~~q~s 115 (144)
T 2cxc_A 86 FPGVKIESINVRER-NGVKQVVIKVSEDDKG 115 (144)
T ss_dssp STTSCEEEEEEEEE-TTEEEEEEEECTTTHH
T ss_pred cCCceEEEEEEeec-CCcEEEEEEEChHHhh
Confidence 33555666665433 6779999999986543
No 316
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=23.22 E-value=53 Score=18.97 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=14.7
Q ss_pred EEeCC--CCHHHHHHHHHHH
Q psy6375 29 IVHLQ--ANKHHIKAAVKKM 46 (86)
Q Consensus 29 ~V~~~--a~K~eIk~ave~l 46 (86)
-|+++ ++..+||+|..++
T Consensus 18 gl~~~~~a~~~eIk~aYr~l 37 (79)
T 1faf_A 18 KLPRQLWGDFGRMQQAYKQQ 37 (79)
T ss_dssp TCCSSSTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 35677 9999999998775
No 317
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=23.19 E-value=64 Score=18.49 Aligned_cols=33 Identities=6% Similarity=0.123 Sum_probs=26.5
Q ss_pred CEEEEE-EeCCCCHHHHHHHHHHHhCCceeeEEE
Q psy6375 24 NTLVFI-VHLQANKHHIKAAVKKMYDINVAKVNT 56 (86)
Q Consensus 24 n~~~F~-V~~~a~K~eIk~ave~lf~VkV~~VnT 56 (86)
++..+. +++++|=.++|++|+...|+.+..-+.
T Consensus 10 G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL 43 (86)
T 2kzr_A 10 GTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRI 43 (86)
T ss_dssp EEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCC
T ss_pred CCEEeeecCCCCCHHHHHHHHHHHhCCCccceEE
Confidence 466677 899999999999999999987654433
No 318
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=23.06 E-value=49 Score=19.45 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=17.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHhhC
Q psy6375 59 RPDGKKKAYVRLARDYDALDVANKIG 84 (86)
Q Consensus 59 ~~~~~KKA~VtL~~g~~a~d~a~~~g 84 (86)
.|+|. .+.|+.|..++|+|..++
T Consensus 12 tP~G~---~~~lp~GaT~~D~A~~Ih 34 (78)
T 3hvz_A 12 TPKGD---VISLPIGSTVIDFAYAIH 34 (78)
T ss_dssp CTTSC---EEEEETTCBHHHHHHHHC
T ss_pred CCCCC---EEEecCCCCHHHHHHHhh
Confidence 45552 457999999999998875
No 319
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.03 E-value=34 Score=22.82 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=26.1
Q ss_pred hhhhhcCCEEEEEEe----CCCCHHHHHHHHHHHhCC-cee
Q psy6375 17 MKKIEDNNTLVFIVH----LQANKHHIKAAVKKMYDI-NVA 52 (86)
Q Consensus 17 ~~l~e~~n~~~F~V~----~~a~K~eIk~ave~lf~V-kV~ 52 (86)
..|+.. .+++|.|. +..+|.||++.+-++|++ .+.
T Consensus 20 N~LL~R-ke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d 59 (138)
T 3iz6_U 20 NRLLSR-KQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSN 59 (138)
T ss_dssp BTTTTC-CCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTC
T ss_pred ccCcCc-EEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCC
Confidence 345543 67777663 457899999999999999 543
No 320
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.99 E-value=90 Score=18.68 Aligned_cols=35 Identities=6% Similarity=0.130 Sum_probs=28.8
Q ss_pred CEEEEEE--------eC-CCCHHHHHHHHHHHh--CCceee-EEEee
Q psy6375 24 NTLVFIV--------HL-QANKHHIKAAVKKMY--DINVAK-VNTLI 58 (86)
Q Consensus 24 n~~~F~V--------~~-~a~K~eIk~ave~lf--~VkV~~-VnT~~ 58 (86)
..+.+.+ ++ +.|=.++|+.|+... |+.+.. .+.+.
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~ 72 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY 72 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE
Confidence 4778884 44 499999999999999 999988 77754
No 321
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=22.76 E-value=1.2e+02 Score=18.32 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=29.0
Q ss_pred CEEEE--EEeCCCCHHHHHHHH-HHHhCCceeeEEEee
Q psy6375 24 NTLVF--IVHLQANKHHIKAAV-KKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F--~V~~~a~K~eIk~av-e~lf~VkV~~VnT~~ 58 (86)
..+++ .|+++.|=.++|+.| +...|+.+...+.+.
T Consensus 30 ~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 67 (98)
T 4a20_A 30 PKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL 67 (98)
T ss_dssp SCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE
T ss_pred CEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE
Confidence 35555 566999999999999 998999998888765
No 322
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=22.69 E-value=84 Score=15.96 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCC
Q psy6375 36 KHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARD 73 (86)
Q Consensus 36 K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g 73 (86)
...|.++++++ ||.-..|+.. . +++.|...++
T Consensus 16 ~~~i~~~l~~~-gv~~~~v~~~---~--~~~~v~~~~~ 47 (67)
T 2kyz_A 16 KMRISKALEEL-GVKNYEVSVE---E--KKVVVETENL 47 (67)
T ss_dssp HHHHHHHHHHH-TCSEEEEETT---T--TEEEEECSCH
T ss_pred HHHHHHHHHHc-CCeEEEEECC---C--CEEEEEECCH
Confidence 35688999999 9876666632 1 4677776654
No 323
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.89 E-value=1.1e+02 Score=17.93 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCceeeEEEee-CCCCeeEEEEEcCCCCcHHHHHHhh
Q psy6375 36 KHHIKAAVKKMYDINVAKVNTLI-RPDGKKKAYVRLARDYDALDVANKI 83 (86)
Q Consensus 36 K~eIk~ave~lf~VkV~~VnT~~-~~~~~KKA~VtL~~g~~a~d~a~~~ 83 (86)
..++++.+++ || +|.+|.... .+.|+ |+|++....+|......|
T Consensus 40 e~~l~~~f~~-~G-~v~~v~i~~~~~~G~--afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 40 REDLRVECSK-FG-QIRKLLLFDRHPDGV--ASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp HHHHHHHGGG-TS-CCSEEEEETTCTTCE--EEEECSCHHHHHHHHHHS
T ss_pred HHHHHHHHHc-cC-CEeEEEEecCCCCEE--EEEEECCHHHHHHHHHHc
Confidence 3456655554 45 577773321 13464 999999877766554443
No 324
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=21.35 E-value=55 Score=21.28 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.4
Q ss_pred EeCCCCHHHHHHHHHHH
Q psy6375 30 VHLQANKHHIKAAVKKM 46 (86)
Q Consensus 30 V~~~a~K~eIk~ave~l 46 (86)
|+++|+..|||+|..++
T Consensus 10 ~~~~a~~~~ik~ay~~l 26 (210)
T 3apq_A 10 VSKTASSREIRQAFKKL 26 (210)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 67789999999988775
No 325
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=21.17 E-value=20 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=0.0
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
..+.+.|+++.|=.++|+.|+..+|+++...+.+.
T Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (152)
T 3u5c_f 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp -----------------------------------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 57889999999999999999999999998776543
No 326
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6
Probab=21.03 E-value=60 Score=24.32 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHhCCce
Q psy6375 32 LQANKHHIKAAVKKMYDINV 51 (86)
Q Consensus 32 ~~a~K~eIk~ave~lf~VkV 51 (86)
|..||.||.+.++..+|++-
T Consensus 172 p~ls~~eie~~L~~~LGv~k 191 (349)
T 1zbr_A 172 AGLSRTAIIDTLKESLGVSR 191 (349)
T ss_dssp TTSCHHHHHHHHHHHSCCSE
T ss_pred CCCCHHHHHHHHHHHhCCcE
Confidence 57899999999999999873
No 327
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=20.84 E-value=58 Score=20.89 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.8
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q psy6375 28 FIVHLQANKHHIKAAVKKM 46 (86)
Q Consensus 28 F~V~~~a~K~eIk~ave~l 46 (86)
|-|+++|+..+||+|..++
T Consensus 16 Lgv~~~a~~~eIk~aYr~l 34 (155)
T 2l6l_A 16 LGADPSANISDLKQKYQKL 34 (155)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 4477899999999988775
No 328
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=20.80 E-value=1e+02 Score=16.05 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCC
Q psy6375 36 KHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARD 73 (86)
Q Consensus 36 K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g 73 (86)
...|.++++++-||.-.+||... +++.|+..++
T Consensus 17 ~~~ie~~l~~~~gv~~~~v~~~~-----~~~~v~~~~~ 49 (74)
T 3dxs_X 17 SNSVEAALMNVNGVFKASVALLQ-----NRADVVFDPN 49 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEEGGG-----TEEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEEEEecC-----CEEEEEECCC
Confidence 45678888888787655665433 5778877665
No 329
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=20.70 E-value=1.1e+02 Score=18.81 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=25.8
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHH------hCCceeeEEEe
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKM------YDINVAKVNTL 57 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~l------f~VkV~~VnT~ 57 (86)
--.+|.++|+.+..+++..++++ .|-.|.++...
T Consensus 10 YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~w 49 (110)
T 2j5a_A 10 YETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDW 49 (110)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 35679999999999998888765 36667776543
No 330
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=20.48 E-value=76 Score=22.35 Aligned_cols=42 Identities=7% Similarity=0.170 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHhCCceeeEEEeeCCCCeeEEEEEcCCCCcHHHHHH
Q psy6375 35 NKHHIKAAVKKMYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVAN 81 (86)
Q Consensus 35 ~K~eIk~ave~lf~VkV~~VnT~~~~~~~KKA~VtL~~g~~a~d~a~ 81 (86)
+..++++.|+. || +|.+|+.+. ..|+ |+|++....+|.....
T Consensus 156 tEe~L~~~F~~-fG-~I~~v~v~~-~kG~--AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 156 IESRIRFVFSR-LG-DIDRIRYVE-SKNC--GFVKFKYQANAEFAKE 197 (240)
T ss_dssp HHHHHHHHHHT-TS-CEEEEEEEG-GGTE--EEEEESSHHHHHHHHH
T ss_pred cHHHHHHHHHc-cC-CEEEEEEEC-CCCE--EEEEeCCHHHHHHHHH
Confidence 47778877776 56 677887764 3454 9999998766654433
No 331
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=20.27 E-value=91 Score=22.09 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=26.3
Q ss_pred CEEEEEEeCCCCHHHHHHHHHHHhCCceeeEEEee
Q psy6375 24 NTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLI 58 (86)
Q Consensus 24 n~~~F~V~~~a~K~eIk~ave~lf~VkV~~VnT~~ 58 (86)
| ..-.|+|+++..+++. ++.+++|+|...-|.+
T Consensus 158 N-~G~LVhP~~s~ee~~~-i~d~L~V~~v~~GTvn 190 (228)
T 1g61_A 158 N-KGCLTHPLVEDDELEF-LKSLFKVEYIGKGTAN 190 (228)
T ss_dssp S-SEEEECTTCCHHHHHH-HHHHHTCSEEEECCBT
T ss_pred c-ceEEECCCCCHHHHHH-HHHhcCCCeEeeeeee
Confidence 5 6678999999998864 7999999965655555
Done!