RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6375
         (86 letters)



>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score =  109 bits (274), Expect = 5e-34
 Identities = 35/81 (43%), Positives = 54/81 (66%)

Query: 3  AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRPDG 62
          ++++IK+P  TE AM  ++  N L F V  +A+K  +  AV++ YD+ V +VNT    DG
Sbjct: 1  SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG 60

Query: 63 KKKAYVRLARDYDALDVANKI 83
          +KKA VRL+ D DA +VA++I
Sbjct: 61 EKKAVVRLSEDDDAQEVASRI 81


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
          [TaxId: 562]}
          Length = 93

 Score = 79.0 bits (195), Expect = 1e-21
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 4  FNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP--- 60
            +++ P  +E A   +E +NT+V  V   A K  IKAAV+K++++ V  VNTL+     
Sbjct: 8  LKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67

Query: 61 ----------DGKKKAYVRLARDYD 75
                       KKAYV L    +
Sbjct: 68 KRHGQRIGRRSDWKKAYVTLKEGQN 92


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
          thermophilus [TaxId: 274]}
          Length = 93

 Score = 72.0 bits (177), Expect = 5e-19
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 14/86 (16%)

Query: 3  AFNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP-- 60
          A+++I  P+ +E A           F VH +A K  IK AV+  + + V KVNTL     
Sbjct: 2  AYDVILAPVLSEKAYAGFA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60

Query: 61 -----------DGKKKAYVRLARDYD 75
                       +KKA V++A    
Sbjct: 61 KKRLGRYLGKRPDRKKAIVQVAPGQK 86


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 93

 Score = 67.4 bits (165), Expect = 3e-17
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 14/85 (16%)

Query: 4  FNIIKYPLTTESAMKKIEDNNTLVFIVHLQANKHHIKAAVKKMYDINVAKVNTLIRP--- 60
          ++I++ P+ +E A   +E      F V  +A K  IK A+++ + + V  ++T+  P   
Sbjct: 3  YDILQAPVISEKAYSAME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKR 61

Query: 61 ----------DGKKKAYVRLARDYD 75
                    + +KKA VRLA    
Sbjct: 62 KRVGRFIGQRNDRKKAIVRLAEGQS 86


>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
          204285]}
          Length = 162

 Score = 26.6 bits (58), Expect = 0.29
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 47 YDINVAKVNTLIRPDGKKKAYV 68
          Y  N+ +V+  + PDG  K  V
Sbjct: 36 YVFNLTEVDNWMGPDGVVKEKV 57


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 23.3 bits (50), Expect = 5.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 1   MDAFNIIKYPLTTESAMKKIEDNNTLVFIVH 31
            D  NII Y      A+ +  +N  +V+  H
Sbjct: 227 FDHSNIIHYQPQEAQALAQWIENTRMVYEAH 257


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,168
Number of extensions: 12210
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 15
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)