Query psy6380
Match_columns 103
No_of_seqs 102 out of 1086
Neff 4.4
Searched_HMMs 46136
Date Sat Aug 17 00:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 1.5E-33 3.2E-38 241.6 8.0 89 13-102 19-111 (645)
2 KOG0238|consensus 100.0 7.8E-32 1.7E-36 229.9 7.5 89 13-102 15-107 (670)
3 PF00289 CPSase_L_chain: Carba 100.0 8.4E-31 1.8E-35 182.7 6.0 89 12-101 18-110 (110)
4 COG1038 PycA Pyruvate carboxyl 99.9 9.5E-28 2.1E-32 212.5 8.0 91 12-103 23-118 (1149)
5 KOG0369|consensus 99.9 4.9E-26 1.1E-30 199.9 7.2 90 12-102 49-143 (1176)
6 COG0439 AccC Biotin carboxylas 99.9 6.4E-25 1.4E-29 183.6 5.8 90 13-103 19-112 (449)
7 PRK08654 pyruvate carboxylase 99.8 2.6E-21 5.7E-26 161.8 8.8 90 12-102 18-111 (499)
8 KOG0368|consensus 99.8 9.1E-21 2E-25 174.8 5.5 90 13-102 79-174 (2196)
9 TIGR01235 pyruv_carbox pyruvat 99.8 7.6E-20 1.6E-24 165.9 7.3 90 12-102 15-111 (1143)
10 PRK07178 pyruvate carboxylase 99.8 8.5E-20 1.9E-24 150.5 6.9 90 12-102 18-110 (472)
11 PRK08463 acetyl-CoA carboxylas 99.8 3.2E-19 7E-24 147.5 7.5 90 12-102 18-110 (478)
12 PRK08462 biotin carboxylase; V 99.8 5.6E-19 1.2E-23 143.1 8.2 90 12-102 20-113 (445)
13 PRK12833 acetyl-CoA carboxylas 99.8 5.5E-19 1.2E-23 145.6 8.0 90 12-102 21-114 (467)
14 PRK12999 pyruvate carboxylase; 99.7 3E-18 6.5E-23 155.4 7.4 90 12-102 21-115 (1146)
15 PRK05586 biotin carboxylase; V 99.7 5.3E-18 1.1E-22 138.2 7.9 90 12-102 18-111 (447)
16 TIGR00514 accC acetyl-CoA carb 99.7 6.4E-17 1.4E-21 131.7 8.1 90 12-102 18-111 (449)
17 TIGR02712 urea_carbox urea car 99.6 3.9E-16 8.5E-21 142.3 7.5 90 12-102 17-110 (1201)
18 PRK08591 acetyl-CoA carboxylas 99.6 1.9E-15 4.1E-20 122.3 7.9 90 12-102 18-111 (451)
19 PRK06111 acetyl-CoA carboxylas 99.3 3.8E-12 8.2E-17 102.8 7.6 90 12-102 18-111 (450)
20 PLN02735 carbamoyl-phosphate s 99.1 1.1E-10 2.3E-15 106.2 4.2 90 6-102 595-698 (1102)
21 TIGR01369 CPSaseII_lrg carbamo 98.6 5.9E-08 1.3E-12 87.8 5.6 91 6-102 27-123 (1050)
22 PLN02735 carbamoyl-phosphate s 97.7 5.2E-05 1.1E-09 69.7 5.2 91 6-102 44-140 (1102)
23 PRK05294 carB carbamoyl phosph 97.3 0.00041 8.9E-09 63.2 5.8 90 7-102 29-124 (1066)
24 TIGR01369 CPSaseII_lrg carbamo 97.3 0.00032 6.9E-09 64.0 4.9 90 6-102 575-665 (1050)
25 TIGR00877 purD phosphoribosyla 97.3 0.001 2.2E-08 53.7 7.0 83 13-102 17-100 (423)
26 PRK12815 carB carbamoyl phosph 97.0 0.0011 2.4E-08 60.7 5.4 90 6-102 576-666 (1068)
27 TIGR01142 purT phosphoribosylg 96.9 0.0052 1.1E-07 48.6 7.4 81 12-102 15-96 (380)
28 PLN02257 phosphoribosylamine-- 96.8 0.0024 5.1E-08 53.3 5.6 50 49-102 46-98 (434)
29 PRK13789 phosphoribosylamine-- 96.7 0.0022 4.9E-08 53.1 4.4 50 49-102 52-104 (426)
30 PRK05784 phosphoribosylamine-- 96.7 0.0092 2E-07 50.7 7.9 50 49-102 53-105 (486)
31 PRK13790 phosphoribosylamine-- 96.7 0.0023 4.9E-08 52.0 4.0 53 49-102 11-63 (379)
32 PRK00885 phosphoribosylamine-- 96.6 0.0046 9.9E-08 50.2 5.4 78 12-102 16-98 (420)
33 PRK12815 carB carbamoyl phosph 96.5 0.0031 6.6E-08 57.9 4.5 91 6-102 28-124 (1068)
34 PRK12767 carbamoyl phosphate s 96.5 0.007 1.5E-07 46.7 5.9 88 12-102 16-107 (326)
35 PRK14016 cyanophycin synthetas 96.3 0.0013 2.9E-08 58.0 0.8 45 31-80 144-196 (727)
36 PRK05294 carB carbamoyl phosph 96.3 0.0064 1.4E-07 55.6 5.1 90 6-102 575-665 (1066)
37 PRK06849 hypothetical protein; 96.0 0.0056 1.2E-07 49.1 3.0 88 11-102 20-112 (389)
38 PRK09288 purT phosphoribosylgl 95.7 0.051 1.1E-06 43.2 7.3 81 12-102 28-109 (395)
39 PRK07206 hypothetical protein; 95.7 0.046 9.9E-07 43.9 7.0 80 12-101 18-103 (416)
40 PF15632 ATPgrasp_Ter: ATP-gra 95.5 0.026 5.5E-07 46.3 4.9 86 13-102 16-103 (329)
41 PRK06395 phosphoribosylamine-- 95.5 0.059 1.3E-06 44.9 7.0 81 13-102 19-101 (435)
42 PF13380 CoA_binding_2: CoA bi 95.4 0.033 7.1E-07 38.6 4.4 86 11-99 19-111 (116)
43 TIGR01161 purK phosphoribosyla 95.2 0.11 2.4E-06 41.1 7.4 79 13-102 16-94 (352)
44 PRK01372 ddl D-alanine--D-alan 94.6 0.099 2.1E-06 40.1 5.7 46 57-102 48-94 (304)
45 TIGR03103 trio_acet_GNAT GNAT- 94.5 0.048 1E-06 46.9 4.1 63 9-82 198-268 (547)
46 TIGR01205 D_ala_D_alaTIGR D-al 94.3 0.16 3.6E-06 39.0 6.2 39 64-102 62-101 (315)
47 PLN02948 phosphoribosylaminoim 93.7 0.31 6.7E-06 42.4 7.5 79 13-102 39-117 (577)
48 PRK06019 phosphoribosylaminoim 93.3 0.38 8.2E-06 38.8 6.9 78 13-102 19-96 (372)
49 PRK06524 biotin carboxylase-li 93.1 0.082 1.8E-06 45.7 3.0 53 47-102 85-138 (493)
50 PF02844 GARS_N: Phosphoribosy 92.0 0.16 3.5E-06 35.3 2.8 48 50-101 47-97 (100)
51 PRK14569 D-alanyl-alanine synt 91.2 0.41 8.8E-06 37.4 4.6 40 63-102 54-94 (296)
52 PRK01966 ddl D-alanyl-alanine 91.1 0.23 4.9E-06 39.5 3.1 38 65-102 81-119 (333)
53 COG0458 CarB Carbamoylphosphat 90.5 1.1 2.3E-05 38.2 6.8 85 12-102 22-112 (400)
54 PRK14571 D-alanyl-alanine synt 84.9 2.6 5.7E-05 32.6 5.4 38 65-102 53-91 (299)
55 TIGR02717 AcCoA-syn-alpha acet 81.2 3 6.5E-05 34.9 4.7 45 54-98 77-129 (447)
56 CHL00200 trpA tryptophan synth 80.9 2.4 5.3E-05 33.6 3.9 44 54-98 108-155 (263)
57 PLN02591 tryptophan synthase 80.2 2.6 5.7E-05 33.2 3.9 45 54-99 95-143 (250)
58 cd04730 NPD_like 2-Nitropropan 80.2 4.8 0.0001 29.8 5.1 40 52-94 67-106 (236)
59 PRK14568 vanB D-alanine--D-lac 80.1 1.9 4.1E-05 34.4 3.1 39 64-102 89-128 (343)
60 smart00481 POLIIIAc DNA polyme 78.5 8.1 0.00018 23.5 5.0 46 49-94 12-58 (67)
61 TIGR00262 trpA tryptophan synt 78.3 3.6 7.8E-05 32.2 4.0 50 50-99 94-152 (256)
62 cd08605 GDPD_GDE5_like_1_plant 78.1 3.3 7.3E-05 31.9 3.8 40 55-94 215-254 (282)
63 cd00958 DhnA Class I fructose- 76.0 12 0.00027 27.9 6.3 81 14-94 29-126 (235)
64 PRK02186 argininosuccinate lya 74.9 7.3 0.00016 35.3 5.5 81 12-102 20-103 (887)
65 PRK13278 purP 5-formaminoimida 74.4 6.7 0.00014 32.5 4.8 18 12-29 33-51 (358)
66 PRK13111 trpA tryptophan synth 74.0 4.6 0.0001 31.8 3.7 45 53-98 105-153 (258)
67 PRK05678 succinyl-CoA syntheta 73.2 7.9 0.00017 31.2 4.9 45 54-99 78-125 (291)
68 PF02709 Glyco_transf_7C: N-te 73.1 3.6 7.8E-05 26.8 2.4 37 62-100 33-69 (78)
69 cd04724 Tryptophan_synthase_al 72.9 4.9 0.00011 30.9 3.5 48 50-98 83-140 (242)
70 cd08572 GDPD_GDE5_like Glycero 72.8 5.4 0.00012 31.5 3.8 41 54-94 225-265 (293)
71 TIGR01019 sucCoAalpha succinyl 72.1 8.5 0.00018 30.9 4.8 44 54-98 76-122 (286)
72 COG0151 PurD Phosphoribosylami 69.5 9 0.00019 33.1 4.6 46 52-101 50-98 (428)
73 cd08583 PI-PLCc_GDPD_SF_unchar 67.5 13 0.00028 27.9 4.7 41 53-95 170-210 (237)
74 PF00290 Trp_syntA: Tryptophan 66.8 7.9 0.00017 30.8 3.6 40 54-94 104-144 (259)
75 PRK01130 N-acetylmannosamine-6 65.0 10 0.00022 28.3 3.6 41 57-97 80-126 (221)
76 cd06360 PBP1_alkylbenzenes_lik 63.7 15 0.00033 27.7 4.4 45 53-98 177-225 (336)
77 PRK10128 2-keto-3-deoxy-L-rham 63.5 14 0.0003 29.5 4.3 41 54-99 199-239 (267)
78 cd00405 PRAI Phosphoribosylant 63.2 18 0.00038 26.6 4.7 32 54-88 62-93 (203)
79 TIGR01182 eda Entner-Doudoroff 62.8 20 0.00043 27.6 5.0 76 13-94 27-105 (204)
80 PF08821 CGGC: CGGC domain; I 62.3 17 0.00036 25.4 4.1 43 53-95 53-104 (107)
81 COG2257 Uncharacterized homolo 62.1 15 0.00033 25.6 3.8 30 54-91 34-63 (92)
82 cd08564 GDPD_GsGDE_like Glycer 61.2 12 0.00027 28.6 3.6 40 54-95 189-228 (265)
83 cd08562 GDPD_EcUgpQ_like Glyce 60.7 19 0.00042 26.3 4.5 37 56-94 167-203 (229)
84 smart00052 EAL Putative diguan 60.6 20 0.00043 25.6 4.5 39 52-94 190-228 (241)
85 PLN00125 Succinyl-CoA ligase [ 60.3 20 0.00042 29.2 4.8 46 54-99 82-130 (300)
86 PF07755 DUF1611: Protein of u 59.8 5.9 0.00013 32.4 1.7 42 53-94 50-91 (301)
87 PF01120 Alpha_L_fucos: Alpha- 59.6 21 0.00046 28.8 4.9 44 51-94 90-155 (346)
88 PRK14573 bifunctional D-alanyl 59.5 12 0.00026 33.5 3.7 39 64-102 525-564 (809)
89 PF02811 PHP: PHP domain; Int 59.1 28 0.00061 23.7 4.8 45 49-94 13-59 (175)
90 PRK09860 putative alcohol dehy 58.6 16 0.00034 30.0 4.0 57 14-70 25-93 (383)
91 smart00812 Alpha_L_fucos Alpha 58.0 28 0.00061 29.0 5.4 44 51-94 80-145 (384)
92 cd00958 DhnA Class I fructose- 57.4 13 0.00028 27.8 3.1 35 40-74 7-45 (235)
93 PRK15404 leucine ABC transport 57.4 20 0.00043 28.5 4.3 45 52-97 203-249 (369)
94 COG0800 Eda 2-keto-3-deoxy-6-p 56.9 33 0.00072 26.9 5.4 76 13-94 32-110 (211)
95 cd08574 GDPD_GDE_2_3_6 Glycero 56.7 23 0.00051 27.1 4.5 33 60-94 195-227 (252)
96 PF02593 dTMP_synthase: Thymid 55.4 26 0.00057 27.4 4.6 43 56-98 67-111 (217)
97 PF14871 GHL6: Hypothetical gl 55.0 31 0.00066 24.6 4.6 43 53-95 1-62 (132)
98 cd06557 KPHMT-like Ketopantoat 54.8 17 0.00037 28.8 3.5 44 49-94 83-131 (254)
99 TIGR03234 OH-pyruv-isom hydrox 54.7 30 0.00065 25.8 4.7 45 51-95 13-57 (254)
100 cd00378 SHMT Serine-glycine hy 54.7 73 0.0016 25.1 7.1 46 49-94 145-193 (402)
101 COG0159 TrpA Tryptophan syntha 54.6 21 0.00046 28.8 4.1 40 54-93 111-150 (265)
102 TIGR03239 GarL 2-dehydro-3-deo 53.7 26 0.00057 27.4 4.4 40 54-98 192-231 (249)
103 PRK14572 D-alanyl-alanine synt 53.5 13 0.00028 29.8 2.7 39 64-102 87-126 (347)
104 PRK09454 ugpQ cytoplasmic glyc 53.5 30 0.00066 26.2 4.6 36 57-94 178-213 (249)
105 COG4943 Predicted signal trans 52.7 37 0.00081 30.1 5.5 75 11-94 406-496 (524)
106 COG2818 Tag 3-methyladenine DN 52.7 9.6 0.00021 29.6 1.7 20 79-98 143-162 (188)
107 COG0313 Predicted methyltransf 52.5 30 0.00064 28.3 4.6 20 10-29 68-87 (275)
108 PF14488 DUF4434: Domain of un 52.4 52 0.0011 24.2 5.6 62 12-76 26-88 (166)
109 COG1748 LYS9 Saccharopine dehy 52.3 21 0.00046 30.2 3.9 73 20-94 48-120 (389)
110 cd07035 TPP_PYR_POX_like Pyrim 52.2 27 0.00058 24.1 3.8 43 55-99 1-43 (155)
111 PF02548 Pantoate_transf: Keto 51.6 25 0.00054 28.4 4.0 46 48-95 86-136 (261)
112 PRK09989 hypothetical protein; 51.1 28 0.00061 26.2 4.1 20 54-73 87-108 (258)
113 COG2200 Rtn c-di-GMP phosphodi 50.8 32 0.00069 26.5 4.4 44 47-94 188-231 (256)
114 cd01948 EAL EAL domain. This d 50.6 35 0.00075 24.4 4.3 39 52-94 189-227 (240)
115 cd08185 Fe-ADH1 Iron-containin 50.4 27 0.00058 28.3 4.1 60 15-74 21-93 (380)
116 cd08181 PPD-like 1,3-propanedi 50.2 27 0.00059 28.1 4.1 56 15-70 21-88 (357)
117 PRK10558 alpha-dehydro-beta-de 50.0 33 0.00071 26.9 4.4 41 54-99 199-239 (256)
118 TIGR01163 rpe ribulose-phospha 49.8 35 0.00077 24.5 4.3 40 53-92 67-106 (210)
119 cd08178 AAD_C C-terminal alcoh 49.2 27 0.00059 28.6 4.0 55 20-74 22-88 (398)
120 PRK06015 keto-hydroxyglutarate 48.9 54 0.0012 25.2 5.4 76 13-94 23-101 (201)
121 PF00563 EAL: EAL domain; Int 48.9 28 0.00061 24.8 3.6 37 54-94 192-228 (236)
122 cd08608 GDPD_GDE2 Glycerophosp 48.1 31 0.00066 28.6 4.1 35 58-94 193-227 (351)
123 cd06359 PBP1_Nba_like Type I p 47.8 38 0.00082 25.9 4.4 44 53-97 174-221 (333)
124 TIGR01465 cobM_cbiF precorrin- 47.1 1.1E+02 0.0023 22.6 6.6 14 16-29 68-81 (229)
125 PRK11359 cyclic-di-GMP phospho 47.0 37 0.0008 29.0 4.6 47 50-100 733-784 (799)
126 PTZ00445 p36-lilke protein; Pr 46.6 65 0.0014 25.5 5.6 46 13-68 85-131 (219)
127 cd08563 GDPD_TtGDE_like Glycer 46.4 42 0.0009 24.9 4.3 37 56-94 168-204 (230)
128 COG1441 MenC O-succinylbenzoat 46.4 21 0.00046 29.4 2.9 69 3-71 189-263 (321)
129 cd08556 GDPD Glycerophosphodie 46.2 41 0.00089 23.3 4.1 34 59-94 131-164 (189)
130 cd08568 GDPD_TmGDE_like Glycer 46.2 39 0.00086 25.1 4.2 37 58-94 157-198 (226)
131 cd00429 RPE Ribulose-5-phospha 45.9 48 0.001 23.7 4.5 40 53-92 68-107 (211)
132 PRK13125 trpA tryptophan synth 45.9 31 0.00068 26.4 3.7 46 52-97 88-139 (244)
133 COG3367 Uncharacterized conser 45.8 74 0.0016 26.9 6.0 43 51-93 83-125 (339)
134 PF07555 NAGidase: beta-N-acet 45.6 25 0.00054 28.7 3.2 37 52-88 56-96 (306)
135 cd08179 NADPH_BDH NADPH-depend 45.1 35 0.00076 27.6 4.0 60 11-70 14-86 (375)
136 cd08182 HEPD Hydroxyethylphosp 44.9 34 0.00074 27.5 3.9 56 15-70 18-82 (367)
137 PRK09140 2-dehydro-3-deoxy-6-p 44.7 46 0.00099 25.2 4.3 38 50-92 69-106 (206)
138 TIGR00096 probable S-adenosylm 43.7 65 0.0014 25.9 5.3 39 13-68 66-104 (276)
139 PRK09997 hydroxypyruvate isome 43.4 61 0.0013 24.4 4.9 22 54-75 87-108 (258)
140 COG1010 CobJ Precorrin-3B meth 42.8 41 0.00089 27.2 4.0 17 13-29 66-82 (249)
141 cd02801 DUS_like_FMN Dihydrour 42.7 32 0.00068 25.2 3.1 39 49-88 190-228 (231)
142 PF01408 GFO_IDH_MocA: Oxidore 42.4 8.8 0.00019 25.0 0.1 59 8-67 50-115 (120)
143 cd08187 BDH Butanol dehydrogen 42.1 45 0.00097 27.1 4.2 56 15-70 24-91 (382)
144 COG4747 ACT domain-containing 41.8 1.2E+02 0.0025 22.6 5.9 43 54-97 83-137 (142)
145 PRK01222 N-(5'-phosphoribosyl) 41.5 1.2E+02 0.0027 22.8 6.3 33 53-88 65-97 (210)
146 TIGR03581 EF_0839 conserved hy 41.3 88 0.0019 25.2 5.6 48 49-97 132-183 (236)
147 PF15472 DUF4638: Domain of un 41.2 16 0.00035 29.7 1.4 51 12-73 194-250 (268)
148 PF10119 MethyTransf_Reg: Pred 41.1 22 0.00047 23.4 1.9 18 80-97 22-39 (86)
149 PRK09532 DNA polymerase III su 41.0 43 0.00094 31.0 4.3 46 49-94 16-62 (874)
150 cd08189 Fe-ADH5 Iron-containin 41.0 45 0.00097 27.0 4.0 60 15-74 21-93 (374)
151 PRK07028 bifunctional hexulose 40.5 34 0.00073 28.3 3.3 36 57-94 73-111 (430)
152 TIGR00789 flhB_rel flhB C-term 40.4 62 0.0014 21.5 4.0 27 54-88 29-55 (82)
153 PF03102 NeuB: NeuB family; I 40.4 18 0.00039 28.4 1.6 38 57-94 1-73 (241)
154 PF08901 DUF1847: Protein of u 39.9 32 0.0007 26.0 2.8 45 50-94 39-85 (157)
155 TIGR01949 AroFGH_arch predicte 39.8 45 0.00098 25.6 3.7 37 40-76 24-62 (258)
156 TIGR02638 lactal_redase lactal 39.7 48 0.001 26.9 4.0 56 15-70 24-91 (379)
157 COG0218 Predicted GTPase [Gene 39.7 24 0.00052 27.5 2.1 19 70-88 77-95 (200)
158 PF12683 DUF3798: Protein of u 39.6 42 0.00091 27.5 3.6 42 53-94 118-167 (275)
159 PRK07455 keto-hydroxyglutarate 39.2 63 0.0014 24.0 4.3 41 50-95 70-111 (187)
160 PF00465 Fe-ADH: Iron-containi 39.1 33 0.00072 27.4 3.0 25 46-70 59-83 (366)
161 cd08601 GDPD_SaGlpQ_like Glyce 39.0 64 0.0014 24.4 4.4 37 55-94 186-222 (256)
162 cd07381 MPP_CapA CapA and rela 38.9 85 0.0018 23.4 5.0 42 51-92 158-209 (239)
163 cd00452 KDPG_aldolase KDPG and 38.8 65 0.0014 23.5 4.3 38 51-93 63-100 (190)
164 cd06332 PBP1_aromatic_compound 38.5 60 0.0013 24.3 4.1 45 53-98 174-222 (333)
165 TIGR03884 sel_bind_Methan sele 38.5 32 0.00069 23.1 2.3 17 54-70 31-47 (74)
166 PRK10624 L-1,2-propanediol oxi 38.3 51 0.0011 26.8 4.0 56 15-70 25-92 (382)
167 KOG0140|consensus 38.0 17 0.00036 31.0 1.1 28 64-92 357-384 (408)
168 cd04729 NanE N-acetylmannosami 38.0 48 0.001 24.6 3.5 38 57-94 84-127 (219)
169 PLN02522 ATP citrate (pro-S)-l 37.8 65 0.0014 28.9 4.8 45 53-98 91-138 (608)
170 cd08176 LPO Lactadehyde:propan 37.8 54 0.0012 26.6 4.0 57 14-70 22-90 (377)
171 PF11503 DUF3215: Protein of u 37.7 16 0.00034 24.7 0.8 13 15-27 62-74 (77)
172 TIGR03450 mycothiol_INO1 inosi 37.7 61 0.0013 27.4 4.4 38 60-97 145-182 (351)
173 PRK15454 ethanol dehydrogenase 37.5 52 0.0011 27.2 3.9 57 14-70 43-111 (395)
174 cd08559 GDPD_periplasmic_GlpQ_ 37.4 38 0.00083 26.6 3.0 30 65-94 223-260 (296)
175 cd08190 HOT Hydroxyacid-oxoaci 37.3 50 0.0011 27.3 3.8 57 14-70 17-85 (414)
176 cd00899 b4GalT Beta-4-Galactos 37.1 53 0.0011 25.7 3.7 38 62-101 125-162 (219)
177 cd04726 KGPDC_HPS 3-Keto-L-gul 36.4 63 0.0014 23.2 3.9 14 55-68 93-106 (202)
178 cd07406 MPP_CG11883_N Drosophi 36.4 1.4E+02 0.0031 22.7 6.0 46 50-95 56-102 (257)
179 cd08573 GDPD_GDE1 Glycerophosp 36.3 41 0.00089 25.9 3.0 31 62-94 202-232 (258)
180 cd07484 Peptidases_S8_Thermita 36.0 94 0.002 23.1 4.9 41 54-94 114-157 (260)
181 cd08192 Fe-ADH7 Iron-containin 35.8 61 0.0013 26.1 4.0 60 15-74 19-91 (370)
182 PRK11596 cyclic-di-GMP phospho 35.8 76 0.0016 23.9 4.3 39 51-93 195-233 (255)
183 TIGR03234 OH-pyruv-isom hydrox 35.7 1.1E+02 0.0024 22.7 5.2 26 54-79 86-111 (254)
184 PRK00278 trpC indole-3-glycero 35.5 85 0.0018 24.5 4.7 77 15-91 79-161 (260)
185 PRK02877 hypothetical protein; 35.4 36 0.00077 23.8 2.3 17 54-70 62-78 (106)
186 TIGR02263 benz_CoA_red_C benzo 35.3 50 0.0011 27.1 3.5 42 53-94 309-355 (380)
187 PRK09997 hydroxypyruvate isome 35.3 83 0.0018 23.6 4.5 43 52-94 15-57 (258)
188 cd08610 GDPD_GDE6 Glycerophosp 35.2 70 0.0015 25.9 4.3 34 59-94 216-249 (316)
189 COG4615 PvdE ABC-type sideroph 35.0 20 0.00043 31.7 1.2 24 14-41 494-517 (546)
190 PRK14994 SAM-dependent 16S rib 34.9 2E+02 0.0043 23.1 6.8 15 14-28 79-93 (287)
191 cd08567 GDPD_SpGDE_like Glycer 34.9 78 0.0017 23.6 4.2 37 56-94 199-235 (263)
192 PRK12855 hypothetical protein; 34.4 38 0.00082 23.7 2.3 17 54-70 62-78 (103)
193 COG0214 SNZ1 Pyridoxine biosyn 34.3 26 0.00057 28.8 1.7 27 62-88 227-255 (296)
194 PRK13561 putative diguanylate 34.3 77 0.0017 27.0 4.6 38 53-94 592-629 (651)
195 TIGR03407 urea_ABC_UrtA urea A 34.1 67 0.0014 25.1 3.9 40 52-92 176-215 (359)
196 PF00590 TP_methylase: Tetrapy 34.0 1.7E+02 0.0038 20.8 6.5 42 14-73 71-115 (210)
197 PF03352 Adenine_glyco: Methyl 33.9 18 0.00039 27.5 0.6 20 79-98 137-156 (179)
198 PRK10551 phage resistance prot 33.7 70 0.0015 27.3 4.2 37 54-94 456-492 (518)
199 cd08551 Fe-ADH iron-containing 33.6 71 0.0015 25.6 4.1 60 15-74 18-90 (370)
200 PRK05576 cobalt-precorrin-2 C( 33.4 2.1E+02 0.0045 21.4 6.6 14 16-29 87-100 (229)
201 cd06357 PBP1_AmiC Periplasmic 33.4 73 0.0016 24.9 4.0 42 50-92 174-215 (360)
202 TIGR03586 PseI pseudaminic aci 33.3 54 0.0012 26.9 3.4 20 50-69 15-34 (327)
203 PRK10060 RNase II stability mo 33.2 77 0.0017 27.6 4.5 44 47-94 593-636 (663)
204 KOG4175|consensus 33.0 61 0.0013 26.2 3.5 41 54-94 112-152 (268)
205 PRK07064 hypothetical protein; 33.0 87 0.0019 26.3 4.6 43 54-100 6-51 (544)
206 cd08186 Fe-ADH8 Iron-containin 32.9 75 0.0016 25.9 4.1 56 19-74 25-94 (383)
207 cd06355 PBP1_FmdD_like Peripla 32.9 88 0.0019 24.3 4.4 45 52-97 175-224 (348)
208 cd08560 GDPD_EcGlpQ_like_1 Gly 32.8 77 0.0017 26.2 4.2 39 56-94 249-295 (356)
209 PRK01119 hypothetical protein; 32.7 42 0.00091 23.4 2.3 17 54-70 62-78 (106)
210 COG1964 Predicted Fe-S oxidore 32.6 76 0.0016 27.9 4.3 49 52-100 125-180 (475)
211 PF03162 Y_phosphatase2: Tyros 32.4 91 0.002 22.8 4.2 24 6-29 19-43 (164)
212 TIGR01469 cobA_cysG_Cterm urop 32.2 2.1E+02 0.0045 21.1 6.7 13 17-29 75-87 (236)
213 TIGR00624 tag DNA-3-methyladen 31.7 30 0.00064 26.4 1.5 19 80-98 140-158 (179)
214 TIGR00222 panB 3-methyl-2-oxob 31.7 93 0.002 25.0 4.4 44 49-94 86-133 (263)
215 cd08193 HVD 5-hydroxyvalerate 31.6 77 0.0017 25.6 4.0 56 15-70 21-88 (376)
216 cd08606 GDPD_YPL110cp_fungi Gl 31.5 82 0.0018 24.2 4.0 41 54-94 209-249 (286)
217 PRK06464 phosphoenolpyruvate s 31.5 89 0.0019 28.6 4.7 45 54-100 731-776 (795)
218 PRK10353 3-methyl-adenine DNA 31.4 29 0.00064 26.6 1.5 18 81-98 144-161 (187)
219 cd03802 GT1_AviGT4_like This f 31.4 81 0.0018 23.2 3.8 50 49-98 181-233 (335)
220 PRK15473 cbiF cobalt-precorrin 31.2 2.1E+02 0.0045 22.0 6.1 13 17-29 78-90 (257)
221 PRK07709 fructose-bisphosphate 31.1 43 0.00092 27.0 2.4 25 50-74 154-178 (285)
222 PRK06136 uroporphyrin-III C-me 31.0 2.3E+02 0.0049 21.2 6.3 13 17-29 78-90 (249)
223 KOG2387|consensus 31.0 39 0.00086 30.1 2.3 50 46-98 451-504 (585)
224 PRK07226 fructose-bisphosphate 31.0 62 0.0013 25.1 3.2 34 40-73 27-62 (267)
225 cd06342 PBP1_ABC_LIVBP_like Ty 30.9 91 0.002 23.4 4.0 45 51-97 176-223 (334)
226 TIGR02631 xylA_Arthro xylose i 30.6 1.8E+02 0.0039 24.1 6.1 47 46-92 26-83 (382)
227 cd06346 PBP1_ABC_ligand_bindin 30.6 82 0.0018 23.9 3.8 46 51-97 178-225 (312)
228 PRK05581 ribulose-phosphate 3- 30.5 1E+02 0.0022 22.4 4.2 38 53-92 72-111 (220)
229 PF01261 AP_endonuc_2: Xylose 30.4 21 0.00046 24.7 0.5 36 59-94 2-44 (213)
230 cd03109 DTBS Dethiobiotin synt 30.4 1.8E+02 0.004 19.9 6.6 75 13-95 21-101 (134)
231 PLN02625 uroporphyrin-III C-me 30.4 2.1E+02 0.0046 22.0 6.1 13 17-29 90-102 (263)
232 COG3268 Uncharacterized conser 30.3 1.3E+02 0.0027 25.9 5.1 79 2-87 53-147 (382)
233 PRK06552 keto-hydroxyglutarate 30.2 1E+02 0.0022 23.6 4.3 40 49-94 73-113 (213)
234 cd01822 Lysophospholipase_L1_l 29.8 99 0.0021 21.0 3.8 45 51-95 87-140 (177)
235 PRK07114 keto-hydroxyglutarate 29.6 1.4E+02 0.003 23.3 4.9 41 48-94 75-116 (222)
236 cd07411 MPP_SoxB_N Thermus the 29.5 1.9E+02 0.004 22.1 5.6 45 50-95 69-114 (264)
237 PRK09856 fructoselysine 3-epim 29.4 1.2E+02 0.0027 22.6 4.5 43 53-95 14-65 (275)
238 PF01906 YbjQ_1: Putative heav 29.4 52 0.0011 22.3 2.3 17 54-70 62-78 (105)
239 PRK01217 hypothetical protein; 29.3 51 0.0011 23.3 2.3 17 54-70 69-85 (114)
240 cd01829 SGNH_hydrolase_peri2 S 29.2 1E+02 0.0022 21.6 3.8 44 52-95 95-148 (200)
241 TIGR03569 NeuB_NnaB N-acetylne 29.2 40 0.00087 27.7 2.0 17 53-69 17-33 (329)
242 cd07409 MPP_CD73_N CD73 ecto-5 29.0 2.7E+02 0.0059 21.5 6.8 47 49-95 66-113 (281)
243 PRK14570 D-alanyl-alanine synt 29.0 62 0.0014 26.4 3.1 38 64-101 86-124 (364)
244 cd08602 GDPD_ScGlpQ1_like Glyc 28.9 49 0.0011 26.4 2.4 31 64-94 231-270 (309)
245 PRK00311 panB 3-methyl-2-oxobu 28.8 57 0.0012 26.0 2.8 44 49-94 86-134 (264)
246 cd06359 PBP1_Nba_like Type I p 28.8 94 0.002 23.7 3.9 40 58-98 58-97 (333)
247 PRK00967 hypothetical protein; 28.8 54 0.0012 22.7 2.3 17 54-70 62-78 (105)
248 cd08194 Fe-ADH6 Iron-containin 28.6 93 0.002 25.2 4.0 56 15-70 18-85 (375)
249 TIGR02884 spore_pdaA delta-lac 28.6 90 0.0019 23.5 3.7 43 54-97 52-95 (224)
250 PRK12856 hypothetical protein; 28.6 54 0.0012 22.9 2.3 17 54-70 62-78 (103)
251 TIGR02764 spore_ybaN_pdaB poly 28.5 95 0.0021 22.3 3.7 40 54-93 21-61 (191)
252 cd06334 PBP1_ABC_ligand_bindin 28.5 95 0.0021 24.4 3.9 43 52-96 182-227 (351)
253 cd08607 GDPD_GDE5 Glycerophosp 28.4 1.1E+02 0.0024 23.4 4.3 39 56-94 224-262 (290)
254 COG0527 LysC Aspartokinases [A 28.4 1E+02 0.0022 26.4 4.4 45 20-71 213-259 (447)
255 TIGR03581 EF_0839 conserved hy 28.3 49 0.0011 26.6 2.3 24 50-73 187-210 (236)
256 PRK09875 putative hydrolase; P 28.1 1.2E+02 0.0025 24.5 4.4 37 13-69 41-78 (292)
257 COG1830 FbaB DhnA-type fructos 28.0 71 0.0015 26.0 3.2 30 40-69 30-60 (265)
258 COG0512 PabA Anthranilate/para 28.0 68 0.0015 24.9 3.0 51 10-60 8-70 (191)
259 PF13407 Peripla_BP_4: Peripla 27.9 1.4E+02 0.0031 21.4 4.5 41 54-94 44-84 (257)
260 COG0673 MviM Predicted dehydro 27.7 47 0.001 25.4 2.1 57 7-67 54-120 (342)
261 cd08184 Fe-ADH3 Iron-containin 27.6 83 0.0018 25.7 3.5 25 46-70 59-86 (347)
262 PRK15447 putative protease; Pr 27.5 1.1E+02 0.0025 24.2 4.3 23 53-75 16-38 (301)
263 PRK11263 cardiolipin synthase 27.5 1.3E+02 0.0028 25.3 4.7 40 54-94 51-92 (411)
264 cd07477 Peptidases_S8_Subtilis 27.4 1.8E+02 0.0038 21.0 4.9 43 52-94 83-128 (229)
265 cd08584 PI-PLCc_GDPD_SF_unchar 27.4 34 0.00074 26.3 1.2 22 8-29 138-159 (192)
266 PRK00230 orotidine 5'-phosphat 27.3 1.1E+02 0.0024 23.3 4.0 42 50-91 10-54 (230)
267 PRK07998 gatY putative fructos 27.3 56 0.0012 26.4 2.5 26 49-74 150-175 (283)
268 cd08191 HHD 6-hydroxyhexanoate 27.3 1E+02 0.0022 25.1 4.0 56 15-70 18-84 (386)
269 TIGR03190 benz_CoA_bzdN benzoy 27.2 1.1E+02 0.0024 25.1 4.2 42 53-94 301-347 (377)
270 PRK08609 hypothetical protein; 27.2 1.2E+02 0.0026 26.5 4.6 49 52-100 479-529 (570)
271 TIGR01740 pyrF orotidine 5'-ph 27.2 1.1E+02 0.0025 22.7 4.0 42 50-91 6-50 (213)
272 TIGR01467 cobI_cbiL precorrin- 27.1 2.6E+02 0.0057 20.7 6.3 15 15-29 86-100 (230)
273 TIGR00737 nifR3_yhdG putative 27.1 72 0.0016 25.2 3.0 38 49-87 199-236 (319)
274 PRK09989 hypothetical protein; 27.0 1.6E+02 0.0034 22.1 4.8 42 53-95 16-58 (258)
275 PRK11579 putative oxidoreducta 27.0 61 0.0013 25.6 2.6 65 3-68 47-118 (346)
276 TIGR03588 PseC UDP-4-keto-6-de 26.7 3.1E+02 0.0068 21.6 6.6 43 51-94 104-152 (380)
277 cd06331 PBP1_AmiC_like Type I 26.7 1.3E+02 0.0028 22.9 4.3 40 52-92 174-213 (333)
278 TIGR03128 RuMP_HxlA 3-hexulose 26.6 1.1E+02 0.0024 22.1 3.8 41 54-96 91-132 (206)
279 COG2089 SpsE Sialic acid synth 26.5 46 0.001 28.1 1.9 20 50-69 28-47 (347)
280 PF07071 DUF1341: Protein of u 26.5 49 0.0011 26.3 2.0 24 50-73 187-210 (218)
281 PRK11059 regulatory protein Cs 26.3 95 0.0021 26.7 3.8 42 49-94 587-628 (640)
282 TIGR01449 PGP_bact 2-phosphogl 26.2 56 0.0012 23.2 2.1 24 56-79 169-192 (213)
283 TIGR01454 AHBA_synth_RP 3-amin 26.2 43 0.00092 24.0 1.5 21 58-78 161-181 (205)
284 PF04577 DUF563: Protein of un 26.2 2.2E+02 0.0048 20.0 5.2 48 47-100 114-163 (206)
285 COG0393 Uncharacterized conser 26.2 61 0.0013 23.1 2.2 17 54-70 62-78 (108)
286 PF06122 TraH: Conjugative rel 26.1 18 0.00038 29.7 -0.6 26 48-75 64-89 (361)
287 PF01081 Aldolase: KDPG and KH 26.0 94 0.002 23.7 3.4 75 13-94 27-105 (196)
288 cd03334 Fab1_TCP TCP-1 like do 25.9 1.7E+02 0.0037 22.8 4.9 38 55-95 120-157 (261)
289 cd06337 PBP1_ABC_ligand_bindin 25.9 1.1E+02 0.0024 23.9 3.8 40 52-92 190-229 (357)
290 PLN02334 ribulose-phosphate 3- 25.8 1.2E+02 0.0027 22.7 4.0 39 54-92 77-117 (229)
291 cd06356 PBP1_Amide_Urea_BP_lik 25.8 1.1E+02 0.0024 23.5 3.9 39 52-91 174-212 (334)
292 smart00642 Aamy Alpha-amylase 25.8 46 0.00099 24.2 1.6 26 69-94 62-87 (166)
293 PF05952 ComX: Bacillus compet 25.8 36 0.00079 21.7 0.9 27 74-100 7-33 (57)
294 cd08604 GDPD_SHV3_repeat_2 Gly 25.7 88 0.0019 24.8 3.3 31 64-94 216-254 (300)
295 PRK13210 putative L-xylulose 5 25.6 1.1E+02 0.0025 22.8 3.8 44 51-94 15-69 (284)
296 cd08180 PDD 1,3-propanediol de 25.6 1.4E+02 0.0031 23.6 4.5 62 9-70 11-83 (332)
297 TIGR02873 spore_ylxY probable 25.4 1.1E+02 0.0024 24.1 3.8 43 53-96 99-142 (268)
298 PRK12677 xylose isomerase; Pro 25.4 2.3E+02 0.0051 23.5 5.9 49 46-94 25-84 (384)
299 TIGR01668 YqeG_hyp_ppase HAD s 25.3 94 0.002 22.2 3.1 22 58-79 122-143 (170)
300 TIGR00594 polc DNA-directed DN 25.3 1.1E+02 0.0025 28.8 4.4 46 49-94 14-60 (1022)
301 TIGR01417 PTS_I_fam phosphoeno 25.1 1.1E+02 0.0023 27.0 3.9 44 53-99 483-527 (565)
302 cd00851 MTH1175 This uncharact 24.9 1.5E+02 0.0033 18.7 3.8 39 54-96 52-90 (103)
303 cd06336 PBP1_ABC_ligand_bindin 24.9 1.3E+02 0.0029 23.1 4.1 40 52-92 180-220 (347)
304 PRK09248 putative hydrolase; V 24.8 1.8E+02 0.004 21.9 4.8 42 53-94 141-189 (246)
305 TIGR01858 tag_bisphos_ald clas 24.7 71 0.0015 25.7 2.6 25 50-74 151-175 (282)
306 PRK05402 glycogen branching en 24.7 1E+02 0.0022 27.6 3.9 39 56-94 270-332 (726)
307 PRK03732 hypothetical protein; 24.7 70 0.0015 22.7 2.3 21 54-75 69-89 (114)
308 cd07034 TPP_PYR_PFOR_IOR-alpha 24.5 1.7E+02 0.0037 20.2 4.3 43 54-100 2-51 (160)
309 cd03804 GT1_wbaZ_like This fam 24.5 1E+02 0.0022 23.4 3.3 48 49-99 205-252 (351)
310 PRK10637 cysG siroheme synthas 24.5 3E+02 0.0065 23.1 6.4 14 16-29 290-303 (457)
311 cd04883 ACT_AcuB C-terminal AC 24.4 86 0.0019 18.5 2.4 17 81-97 56-72 (72)
312 PF10111 Glyco_tranf_2_2: Glyc 24.2 75 0.0016 24.4 2.6 29 70-100 190-218 (281)
313 PRK13958 N-(5'-phosphoribosyl) 24.2 3.2E+02 0.0068 20.6 6.3 33 53-88 63-95 (207)
314 cd06348 PBP1_ABC_ligand_bindin 24.2 1.5E+02 0.0033 22.5 4.3 45 52-97 179-225 (344)
315 cd07405 MPP_UshA_N Escherichia 24.2 2.7E+02 0.0059 21.7 5.8 46 49-94 59-105 (285)
316 cd08582 GDPD_like_2 Glyceropho 24.0 1.5E+02 0.0032 21.9 4.1 34 60-94 172-205 (233)
317 KOG0226|consensus 24.0 49 0.0011 27.3 1.6 33 70-102 231-265 (290)
318 cd06330 PBP1_Arsenic_SBP_like 23.9 1.3E+02 0.0029 22.8 3.9 45 52-97 182-230 (346)
319 cd01581 AcnB Aconitate hydrata 23.8 96 0.0021 26.8 3.4 79 12-100 39-117 (436)
320 PF02126 PTE: Phosphotriestera 23.6 1.3E+02 0.0029 24.3 4.0 37 13-69 45-82 (308)
321 PRK09776 putative diguanylate 23.3 1.5E+02 0.0033 26.4 4.6 38 53-94 1032-1069(1092)
322 PF01116 F_bP_aldolase: Fructo 23.2 88 0.0019 25.1 2.9 27 48-74 151-177 (287)
323 PF06050 HGD-D: 2-hydroxygluta 23.2 95 0.0021 24.0 3.0 43 51-93 272-320 (349)
324 PRK05673 dnaE DNA polymerase I 23.1 1.6E+02 0.0036 28.2 5.0 46 49-94 15-61 (1135)
325 PRK06852 aldolase; Validated 23.1 81 0.0018 25.9 2.7 29 48-76 55-83 (304)
326 PRK07279 dnaE DNA polymerase I 23.1 2.1E+02 0.0045 27.5 5.6 47 48-94 14-61 (1034)
327 cd06361 PBP1_GPC6A_like Ligand 22.9 1.4E+02 0.003 24.3 4.0 42 55-97 224-267 (403)
328 PRK12738 kbaY tagatose-bisphos 22.6 83 0.0018 25.5 2.6 25 50-74 153-177 (286)
329 PRK05898 dnaE DNA polymerase I 22.1 1.6E+02 0.0035 28.0 4.7 46 49-94 15-61 (971)
330 cd08188 Fe-ADH4 Iron-containin 22.0 1.5E+02 0.0032 24.1 4.0 56 15-70 23-90 (377)
331 cd00331 IGPS Indole-3-glycerol 22.0 3E+02 0.0065 20.2 5.4 42 46-87 25-68 (217)
332 PRK00208 thiG thiazole synthas 21.9 1.8E+02 0.004 23.4 4.4 43 49-95 104-149 (250)
333 PHA02115 hypothetical protein 21.9 52 0.0011 23.1 1.2 21 15-37 50-70 (105)
334 PRK12857 fructose-1,6-bisphosp 21.8 89 0.0019 25.2 2.7 25 50-74 153-177 (284)
335 PRK15138 aldehyde reductase; P 21.8 1.2E+02 0.0026 24.9 3.5 25 46-70 66-90 (387)
336 TIGR01418 PEP_synth phosphoeno 21.6 1.6E+02 0.0035 26.9 4.5 45 54-100 724-769 (782)
337 COG2102 Predicted ATPases of P 21.5 1.9E+02 0.0041 23.0 4.4 39 54-94 101-139 (223)
338 PRK15108 biotin synthase; Prov 21.5 3.1E+02 0.0066 22.3 5.7 45 53-100 112-156 (345)
339 PRK11143 glpQ glycerophosphodi 21.4 98 0.0021 25.4 2.9 32 64-95 268-308 (355)
340 cd08171 GlyDH-like2 Glycerol d 21.4 1.3E+02 0.0029 24.0 3.6 27 48-74 61-88 (345)
341 PRK12737 gatY tagatose-bisphos 21.4 92 0.002 25.1 2.7 25 50-74 153-177 (284)
342 PHA02597 30.2 hypothetical pro 21.3 63 0.0014 22.9 1.6 19 58-76 158-178 (197)
343 PRK08610 fructose-bisphosphate 21.3 86 0.0019 25.4 2.5 25 50-74 154-178 (286)
344 PF09370 TIM-br_sig_trns: TIM- 21.3 1.5E+02 0.0033 24.2 3.9 46 46-93 89-136 (268)
345 PF01177 Asp_Glu_race: Asp/Glu 21.0 1.2E+02 0.0027 21.6 3.1 49 53-101 159-212 (216)
346 PRK07695 transcriptional regul 21.0 2E+02 0.0044 20.9 4.2 18 58-75 66-83 (201)
347 COG0546 Gph Predicted phosphat 20.9 77 0.0017 23.4 2.0 19 58-76 175-193 (220)
348 PRK05672 dnaE2 error-prone DNA 20.9 1.7E+02 0.0037 27.8 4.7 46 49-94 18-64 (1046)
349 PLN02469 hydroxyacylglutathion 20.8 1.2E+02 0.0025 23.6 3.1 35 53-87 149-188 (258)
350 TIGR00693 thiE thiamine-phosph 20.7 1.4E+02 0.0031 21.3 3.4 19 58-76 66-84 (196)
351 PRK09484 3-deoxy-D-manno-octul 20.7 3.3E+02 0.0072 19.6 6.4 74 12-94 57-136 (183)
352 PF09587 PGA_cap: Bacterial ca 20.6 3E+02 0.0065 20.7 5.3 47 55-101 171-228 (250)
353 PF13709 DUF4159: Domain of un 20.6 1.6E+02 0.0035 22.3 3.8 50 17-70 155-204 (207)
354 PRK07135 dnaE DNA polymerase I 20.5 1.8E+02 0.0039 27.7 4.6 46 49-94 16-62 (973)
355 TIGR00768 rimK_fam alpha-L-glu 20.5 99 0.0022 22.8 2.5 31 66-96 49-79 (277)
356 PF00875 DNA_photolyase: DNA p 20.4 71 0.0015 22.4 1.7 42 54-95 77-122 (165)
357 KOG2923|consensus 20.4 77 0.0017 20.9 1.7 18 7-24 26-46 (67)
358 PF00861 Ribosomal_L18p: Ribos 20.4 1.8E+02 0.0038 20.3 3.7 44 50-93 73-119 (119)
359 COG1797 CobB Cobyrinic acid a, 20.3 2.1E+02 0.0046 25.0 4.8 51 9-88 261-318 (451)
360 TIGR03413 GSH_gloB hydroxyacyl 20.2 86 0.0019 23.9 2.2 35 53-87 140-178 (248)
361 cd07197 nitrilase Nitrilase su 20.2 2.5E+02 0.0055 20.2 4.6 18 53-70 19-36 (253)
362 cd07493 Peptidases_S8_9 Peptid 20.2 1.7E+02 0.0038 21.9 3.9 37 58-94 97-151 (261)
363 PRK09427 bifunctional indole-3 20.1 4.1E+02 0.0089 22.8 6.5 32 54-88 318-349 (454)
364 TIGR03270 methan_mark_4 putati 20.0 1.1E+02 0.0023 23.9 2.7 49 15-73 84-135 (202)
365 cd08177 MAR Maleylacetate redu 20.0 95 0.0021 24.7 2.5 59 15-74 18-87 (337)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=1.5e-33 Score=241.60 Aligned_cols=89 Identities=37% Similarity=0.620 Sum_probs=83.8
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
...++.| +|||||||.| +|+.||+|||+++.+ ++.+|||++++||++|+++|||||||||||||||++|+++|++
T Consensus 19 Rtar~lGi~tVAVYSdaD-a~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~FA~a~~~ 97 (645)
T COG4770 19 RTARDLGIRTVAVYSDAD-ADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVED 97 (645)
T ss_pred HHHHHcCCceEEEEecCC-CCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccCCccccccCHHHHHHHHH
Confidence 5678999 9999999999 999999999996543 5678999999999999999999999999999999999999999
Q ss_pred CCCeEeCCChhhhc
Q psy6380 89 AALEFIGPTTNVLK 102 (103)
Q Consensus 89 ~gi~FIGP~~~~m~ 102 (103)
+|++|||||+++|+
T Consensus 98 aGlvfIGP~~~aI~ 111 (645)
T COG4770 98 AGLVFIGPSAGAIR 111 (645)
T ss_pred CCcEEECCCHHHHH
Confidence 99999999999987
No 2
>KOG0238|consensus
Probab=99.97 E-value=7.8e-32 Score=229.93 Aligned_cols=89 Identities=33% Similarity=0.570 Sum_probs=83.4
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
.-+|+.| +||||||+.| +++.|++|||+++.+ +++.|||++++||++|+++|||||||||||||||++|++.|++
T Consensus 15 rTakkmGI~tVAV~Sd~D-~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~Fae~c~~ 93 (670)
T KOG0238|consen 15 RTAKKMGIRTVAVYSDAD-RNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAEFAELCED 93 (670)
T ss_pred hHHHHhCCeEEEEEccCc-cccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccchHHHHHHHH
Confidence 4578999 9999999999 999999999997543 5668999999999999999999999999999999999999999
Q ss_pred CCCeEeCCChhhhc
Q psy6380 89 AALEFIGPTTNVLK 102 (103)
Q Consensus 89 ~gi~FIGP~~~~m~ 102 (103)
+||+||||++++||
T Consensus 94 ~Gi~FiGP~~~aIr 107 (670)
T KOG0238|consen 94 AGITFIGPPPSAIR 107 (670)
T ss_pred cCCeEECCCHHHHH
Confidence 99999999999987
No 3
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.97 E-value=8.4e-31 Score=182.67 Aligned_cols=89 Identities=38% Similarity=0.563 Sum_probs=81.0
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCC---CCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGK---RMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~---~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
-.++++.| +||+|+|++| +.+.|+.+||+.+ ..++.++|||++.|+++|++.|+|+|||||||||||++|+++|+
T Consensus 18 ~ra~r~~Gi~tv~v~s~~d-~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~ 96 (110)
T PF00289_consen 18 IRALRELGIETVAVNSNPD-TVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACE 96 (110)
T ss_dssp HHHHHHTTSEEEEEEEGGG-TTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHH
T ss_pred HHHHHHhCCcceeccCchh-cccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHH
Confidence 46899999 9999999999 9999999999853 23577899999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhh
Q psy6380 88 GAALEFIGPTTNVL 101 (103)
Q Consensus 88 ~~gi~FIGP~~~~m 101 (103)
++||+||||++++|
T Consensus 97 ~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 97 DAGIIFIGPSPEAI 110 (110)
T ss_dssp HTT-EESSS-HHHH
T ss_pred HCCCEEECcChHhC
Confidence 99999999999987
No 4
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.94 E-value=9.5e-28 Score=212.50 Aligned_cols=91 Identities=42% Similarity=0.625 Sum_probs=83.2
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCC----CCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGK----RMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~----~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
+.+--|.| +|||||+++| +.+.|...|||++ ..++..+||++|.||++||++|||||||||||||||++|+++|
T Consensus 23 FRAa~ELgi~TVAIys~ED-~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c 101 (1149)
T COG1038 23 FRAANELGIKTVAIYSEED-RLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARAC 101 (1149)
T ss_pred HHHHHhcCceEEEEeeccc-cchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHH
Confidence 34556889 9999999999 9999999999963 4477899999999999999999999999999999999999999
Q ss_pred HhCCCeEeCCChhhhcC
Q psy6380 87 IGAALEFIGPTTNVLKT 103 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~~ 103 (103)
.++||+||||++++|++
T Consensus 102 ~eaGI~FIGP~~e~ld~ 118 (1149)
T COG1038 102 AEAGITFIGPKPEVLDM 118 (1149)
T ss_pred HHcCCEEeCCCHHHHHH
Confidence 99999999999999863
No 5
>KOG0369|consensus
Probab=99.92 E-value=4.9e-26 Score=199.89 Aligned_cols=90 Identities=47% Similarity=0.745 Sum_probs=84.6
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccC----CCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQG----KRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~----~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
+.++-|.| +||||||++| +.+.|...|||+ -.+++...||+++.||++||++++|+||||||||||+++||++|
T Consensus 49 FRa~tEL~~~tvAiYseqD-~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHPGYGFLSErsdFA~av 127 (1176)
T KOG0369|consen 49 FRAATELSMRTVAIYSEQD-RLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHPGYGFLSERSDFAQAV 127 (1176)
T ss_pred HHHHhhhcceEEEEEeccc-hhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecCCccccccchHHHHHH
Confidence 56778899 9999999999 999999999995 35688899999999999999999999999999999999999999
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
.++||+||||++++|+
T Consensus 128 ~~AGi~fiGPspeVi~ 143 (1176)
T KOG0369|consen 128 QDAGIRFIGPSPEVID 143 (1176)
T ss_pred HhcCceEeCCCHHHHH
Confidence 9999999999999986
No 6
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.91 E-value=6.4e-25 Score=183.55 Aligned_cols=90 Identities=38% Similarity=0.627 Sum_probs=82.5
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
.+.++.| +||||||+.| +++.|+.+||+.... ++.+||||+++|+.+|+++|+|+|||||||||||++|++.|++
T Consensus 19 ra~~~lGi~tvav~s~~d-~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~pGygflsen~~fae~~~~ 97 (449)
T COG0439 19 RACRELGIETVAVYSEAD-ADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAE 97 (449)
T ss_pred HHHHHhCCeEEEEecccc-ccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcccchhhhCCHHHHHHHHH
Confidence 3567889 9999999999 888999999996443 4567999999999999999999999999999999999999999
Q ss_pred CCCeEeCCChhhhcC
Q psy6380 89 AALEFIGPTTNVLKT 103 (103)
Q Consensus 89 ~gi~FIGP~~~~m~~ 103 (103)
+||.||||++++|++
T Consensus 98 ~gl~fiGP~~~~i~~ 112 (449)
T COG0439 98 AGLTFIGPSAEAIRR 112 (449)
T ss_pred cCCeeeCcCHHHHHH
Confidence 999999999999874
No 7
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.85 E-value=2.6e-21 Score=161.77 Aligned_cols=90 Identities=37% Similarity=0.654 Sum_probs=82.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|+|+|+.| +++.|+++||+...+ ++.++|+|++.|+++|++.++|+|||||||+|||+.|++.|+
T Consensus 18 iraar~lGi~~V~v~s~~d-~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~~e 96 (499)
T PRK08654 18 MRACRELGIKTVAVYSEAD-KNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACE 96 (499)
T ss_pred HHHHHHcCCeEEEEecccc-ccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHH
Confidence 46889999 9999999999 899999999985432 445799999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++|+
T Consensus 97 ~~gi~~iGps~~~i~ 111 (499)
T PRK08654 97 KAGIVFIGPSSDVIE 111 (499)
T ss_pred HCCCcEECCCHHHHH
Confidence 999999999999986
No 8
>KOG0368|consensus
Probab=99.82 E-value=9.1e-21 Score=174.82 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=82.7
Q ss_pred HHHHHcC--cEEEEeecccc-cccccceeccc---CCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 13 DSLIQAG--TTIIILSKRKL-EDSSLWLLRDQ---GKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 13 ~~~~~~g--~tvai~t~~dl-~~a~~~~~AD~---~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
.-...++ +=|+|.|+.|| ++++|++|||+ .|+++++++|.|+|.|+++|+++.+||||+|||..||||++++++
T Consensus 79 etF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L 158 (2196)
T KOG0368|consen 79 ETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERL 158 (2196)
T ss_pred HHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHH
Confidence 3334455 77999999999 89999999998 477789999999999999999999999999999999999999999
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
.++||+|||||.++|+
T Consensus 159 ~~~~IiFiGPP~~aM~ 174 (2196)
T KOG0368|consen 159 SANGIIFIGPPASAMR 174 (2196)
T ss_pred HhcCcEEECCchHHHH
Confidence 9999999999999996
No 9
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.80 E-value=7.6e-20 Score=165.91 Aligned_cols=90 Identities=40% Similarity=0.609 Sum_probs=82.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC------CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM------PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAK 84 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~------~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~ 84 (103)
..++++.| +||||+|++| +.+.|..+||+.... .+..+|||++.|+++|++.++|+|||||||||||++|++
T Consensus 15 ~ra~~elGi~tVav~s~~D-~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGflsE~~~~a~ 93 (1143)
T TIGR01235 15 FRAANELGIRTVAIYSEED-KLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFAD 93 (1143)
T ss_pred HHHHHHcCCEEEEEECccc-ccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHH
Confidence 46789999 9999999999 889999999996432 345799999999999999999999999999999999999
Q ss_pred HHHhCCCeEeCCChhhhc
Q psy6380 85 AVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 85 ~~~~~gi~FIGP~~~~m~ 102 (103)
.|++.|+.|+||++++|+
T Consensus 94 ~le~~Gi~fiGps~e~i~ 111 (1143)
T TIGR01235 94 ACNKAGIIFIGPKAEVMD 111 (1143)
T ss_pred HHHHcCCcccCCCHHHHH
Confidence 999999999999999986
No 10
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.80 E-value=8.5e-20 Score=150.49 Aligned_cols=90 Identities=30% Similarity=0.576 Sum_probs=82.0
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC--CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM--PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~--~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
..++++.| ++|+++++.| +.+.++++||+...+ .+..+|+|++.|+++|++.++|+|||||||+|||++|++.|++
T Consensus 18 i~a~~~~Gi~~v~v~~~~d-~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~~~e~ 96 (472)
T PRK07178 18 VRACAEMGIRSVAIYSEAD-RHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAE 96 (472)
T ss_pred HHHHHHcCCeEEEEeCCCc-cCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccCHHHHHHHHH
Confidence 36889999 9999999999 888999999996433 2347899999999999999999999999999999999999999
Q ss_pred CCCeEeCCChhhhc
Q psy6380 89 AALEFIGPTTNVLK 102 (103)
Q Consensus 89 ~gi~FIGP~~~~m~ 102 (103)
.|+.|+||++++|+
T Consensus 97 ~Gi~~igps~~~i~ 110 (472)
T PRK07178 97 RGIKFIGPSAEVIR 110 (472)
T ss_pred cCCCccCCCHHHHH
Confidence 99999999999885
No 11
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.78 E-value=3.2e-19 Score=147.48 Aligned_cols=90 Identities=36% Similarity=0.603 Sum_probs=81.5
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCC--CCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMP--PVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~--~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
..++++.| ++|+++++.| +++.|+++||+...++ +..+|+|.+.|+++|++.++|+|||||||+|||++|++.|++
T Consensus 18 i~aa~~lG~~~v~v~~~~d-~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~~~a~~~e~ 96 (478)
T PRK08463 18 IRACRDLHIKSVAIYTEPD-RECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVED 96 (478)
T ss_pred HHHHHHcCCeEEEEECCCc-cCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHH
Confidence 35789999 9999999998 8889999999964332 347899999999999999999999999999999999999999
Q ss_pred CCCeEeCCChhhhc
Q psy6380 89 AALEFIGPTTNVLK 102 (103)
Q Consensus 89 ~gi~FIGP~~~~m~ 102 (103)
.|+.|+||++++|+
T Consensus 97 ~Gi~~iGps~~~i~ 110 (478)
T PRK08463 97 AGIIFIGPKSEVIR 110 (478)
T ss_pred CCCceecCCHHHHH
Confidence 99999999999886
No 12
>PRK08462 biotin carboxylase; Validated
Probab=99.78 E-value=5.6e-19 Score=143.13 Aligned_cols=90 Identities=33% Similarity=0.568 Sum_probs=82.5
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++|+.| +||+++|+.| +++.|++.||+...+ .+.++|+|++.|+++|++.++|+|||||||||||+.|++.|+
T Consensus 20 ~~~~~~~G~~~v~~~~~~d-~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~~~e 98 (445)
T PRK08462 20 IRTIQEMGKEAIAIYSTAD-KDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICS 98 (445)
T ss_pred HHHHHHcCCCEEEEechhh-cCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHH
Confidence 56889999 9999999999 889999999996433 345699999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 99 ~~Gi~~~g~~~~~~~ 113 (445)
T PRK08462 99 HHNIKFIGPSVEVMA 113 (445)
T ss_pred HCCCeEECcCHHHHH
Confidence 999999999999875
No 13
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.78 E-value=5.5e-19 Score=145.56 Aligned_cols=90 Identities=36% Similarity=0.555 Sum_probs=81.2
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCC---CCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKR---MPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~---~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|+++|+.| .++.+.++||+... ....++|+|++.|+++|++.++|+|||||||+|||+.|++.|+
T Consensus 21 i~aa~~lG~~~v~~~s~~d-~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg~g~lsE~~~~~~~~e 99 (467)
T PRK12833 21 IRAARELGMRTVAACSDAD-RDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVE 99 (467)
T ss_pred HHHHHHcCCeEEEEECCCC-CCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHH
Confidence 35789999 9999999988 88899999998542 1345699999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 100 ~~gi~~igps~~ai~ 114 (467)
T PRK12833 100 AAGLIFVGPDAQTIR 114 (467)
T ss_pred HcCCCccCCCHHHHH
Confidence 999999999999986
No 14
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.74 E-value=3e-18 Score=155.44 Aligned_cols=90 Identities=43% Similarity=0.692 Sum_probs=81.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC----CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM----PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~----~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
..++++.| ++|||+++.| .++.|..+||+.... .+..+|+|++.|+++|++.++|+|||||||+|||+.|++.|
T Consensus 21 ~raa~elGi~~Vav~s~~D-~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGflsE~~~~a~~~ 99 (1146)
T PRK12999 21 FRAATELGIRTVAIYSEED-KLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARAC 99 (1146)
T ss_pred HHHHHHcCCEEEEEECCCC-cCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHH
Confidence 45778899 9999999999 889999999986432 34579999999999999999999999999999999999999
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
++.|+.|+||++++|+
T Consensus 100 e~~Gi~fiGps~eai~ 115 (1146)
T PRK12999 100 AEAGITFIGPTAEVLR 115 (1146)
T ss_pred HHcCCcccCCCHHHHH
Confidence 9999999999999986
No 15
>PRK05586 biotin carboxylase; Validated
Probab=99.74 E-value=5.3e-18 Score=138.23 Aligned_cols=90 Identities=31% Similarity=0.498 Sum_probs=81.2
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCC---CCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKR---MPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~---~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++|+.| ++|+++++.| .++.++.+||+... ....++|+|++.|+++|++.++|+|||||||+|||+.|++.|+
T Consensus 18 ~~aa~~lG~~~v~v~~~~d-~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p~~~~~~E~~~~a~~~~ 96 (447)
T PRK05586 18 IRACREMGIETVAVYSEAD-KDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCK 96 (447)
T ss_pred HHHHHHcCCcEEEEcChHh-ccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEcCccccccCHHHHHHHH
Confidence 46789999 9999999988 88899999998532 1445789999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 97 ~~gi~~~g~s~~~~~ 111 (447)
T PRK05586 97 ECNIVFIGPDSETIE 111 (447)
T ss_pred HCCCcEECcCHHHHH
Confidence 999999999999985
No 16
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.69 E-value=6.4e-17 Score=131.74 Aligned_cols=90 Identities=37% Similarity=0.633 Sum_probs=81.1
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++|+.| ++|+++++.| .++.++.+||+...+ ...++|+|++.|+++|++.++|+|||||||+||++.|++.|+
T Consensus 18 ~~aa~~lG~~vv~~~~~~d-~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~~a~~~e 96 (449)
T TIGR00514 18 LRACKELGIKTVAVHSTAD-RDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCE 96 (449)
T ss_pred HHHHHHcCCeEEEEEChhh-hcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHH
Confidence 46789999 9999999888 788999999985422 345689999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 97 ~~Gi~~~g~~~~~~~ 111 (449)
T TIGR00514 97 RSGFTFIGPSAESIR 111 (449)
T ss_pred HCCCcEECcCHHHHH
Confidence 999999999999875
No 17
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.63 E-value=3.9e-16 Score=142.25 Aligned_cols=90 Identities=33% Similarity=0.585 Sum_probs=82.1
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+||+.| ++|+++++.| +.+.++.+||+...+ +..++|+|.+.|+++|++.++|+|||||||||||..|++.|+
T Consensus 17 iraak~lGi~~v~v~sd~d-~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG~gflsE~~~~a~~~e 95 (1201)
T TIGR02712 17 IRTLRRMGIRSVAVYSDAD-AASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACE 95 (1201)
T ss_pred HHHHHHcCCeEEEEECCCC-CCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeCCcccccCHHHHHHHH
Confidence 35899999 9999999988 888999999996432 346799999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.||.|+||++++|+
T Consensus 96 ~~Gi~~iGps~ea~~ 110 (1201)
T TIGR02712 96 AAGIVFVGPTPEQIR 110 (1201)
T ss_pred HcCCcEECCCHHHHH
Confidence 999999999999986
No 18
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.60 E-value=1.9e-15 Score=122.31 Aligned_cols=90 Identities=37% Similarity=0.603 Sum_probs=80.1
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCC---CCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKR---MPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~---~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|+++++.| .++.++++||+... ....++|+|++.|+++|++.++|+|||||||+||++.+++.|+
T Consensus 18 ~~aa~~~G~~vv~~~~~~d-~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~~~~~~~e 96 (451)
T PRK08591 18 IRACKELGIKTVAVHSTAD-RDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICE 96 (451)
T ss_pred HHHHHHcCCeEEEEcChhh-ccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHH
Confidence 35899999 8999999888 77788899998532 1345799999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 97 ~~gi~~~g~~~~~~~ 111 (451)
T PRK08591 97 DSGFTFIGPSAETIR 111 (451)
T ss_pred HCCCceECcCHHHHH
Confidence 999999999999875
No 19
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.33 E-value=3.8e-12 Score=102.75 Aligned_cols=90 Identities=32% Similarity=0.533 Sum_probs=78.0
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|++.++.+ ..+.++..||+..-. ....+|.|.+.|+++|++.++|+|+||+|+++|++.+++.++
T Consensus 18 ~~~a~~lG~~~v~~~~~~~-~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~~~~~~e~~~~~~~~~ 96 (450)
T PRK06111 18 IRTCQKLGIRTVAIYSEAD-RDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCK 96 (450)
T ss_pred HHHHHHcCCeEEEEechhh-ccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHH
Confidence 35789999 8888888877 667778888875322 234689999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.++||++++++
T Consensus 97 ~~g~~~~g~~~~~~~ 111 (450)
T PRK06111 97 EEGIVFIGPSADIIA 111 (450)
T ss_pred HCCCeEECCCHHHHH
Confidence 999999999999875
No 20
>PLN02735 carbamoyl-phosphate synthase
Probab=99.06 E-value=1.1e-10 Score=106.23 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=80.9
Q ss_pred ccCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCc----------
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYG---------- 74 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYG---------- 74 (103)
|-|-.-..+|++.| +||+|.+.+| ..+.++.+||+..-. |++++.|+++|++.++|+|+|+||
T Consensus 595 ~~~v~~~~alr~~G~~tI~v~~npe-tvstd~~~aD~~y~~-----pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~ 668 (1102)
T PLN02735 595 YCCCHASFALQDAGYETIMMNSNPE-TVSTDYDTSDRLYFE-----PLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALP 668 (1102)
T ss_pred eeHHHHHHHHHHcCCeEEEEeCCCc-cccCCcccCCeEEEE-----eCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHH
Confidence 55666778999999 9999999999 777888899986552 688999999999999999999999
Q ss_pred ---cCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 75 ---FLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 75 ---FLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
||+|++.|++ +.+.|+.|+||++++++
T Consensus 669 l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~ 698 (1102)
T PLN02735 669 IQKYLDKNPPPSA-SGNGNVKIWGTSPDSID 698 (1102)
T ss_pred HHHHHHhccchhh-hhcCCeEEECCCHHHHH
Confidence 8999999999 88999999999999985
No 21
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.60 E-value=5.9e-08 Score=87.75 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=74.1
Q ss_pred ccCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc-----CCCC
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF-----LSER 79 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF-----LSEn 79 (103)
|....-..+|+++| ++|++.+.++ .-..+..+||+..-.| ++.+.|.+++++.++|+|+|++|+ ++++
T Consensus 27 ~sg~q~~kalke~G~~vi~v~~np~-~~~~~~~~aD~~y~~p-----~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~ 100 (1050)
T TIGR01369 27 YSGSQACKALKEEGYRVILVNSNPA-TIMTDPEMADKVYIEP-----LTPEAVEKIIEKERPDAILPTFGGQTALNLAVE 100 (1050)
T ss_pred chHHHHHHHHHHcCCEEEEEecchh-hccCChhcCCEEEECC-----CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhh
Confidence 55555678999999 8888888876 4445667788754422 468999999999999999999986 6777
Q ss_pred HHHHHHHHhCCCeEeCCChhhhc
Q psy6380 80 EDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 80 ~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..++..+++.|+.++||++++++
T Consensus 101 l~~~~~le~~Gv~~~G~~~~ai~ 123 (1050)
T TIGR01369 101 LEESGVLEKYGVEVLGTPVEAIK 123 (1050)
T ss_pred HHHHhHHHHCCCEEECCCHHHHH
Confidence 77888899999999999999885
No 22
>PLN02735 carbamoyl-phosphate synthase
Probab=97.70 E-value=5.2e-05 Score=69.69 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=66.0
Q ss_pred ccCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCc-cCCCCHHH-
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYG-FLSEREDF- 82 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYG-FLSEn~~F- 82 (103)
|.++.-..+|+++| ++|++-+.++ .-.....+||+..- ..++.+.|.+++++.++|+|+|++| ...+|-..
T Consensus 44 ~SG~q~~kaLke~G~~Vi~vd~np~-t~~~~~~~aD~~yi-----~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~ 117 (1102)
T PLN02735 44 YSGTQACKALKEEGYEVVLINSNPA-TIMTDPETADRTYI-----APMTPELVEQVIAKERPDALLPTMGGQTALNLAVA 117 (1102)
T ss_pred chHHHHHHHHHHcCCEEEEEeCCcc-cccCChhhCcEEEe-----CCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHH
Confidence 66667788999999 8888877765 22222345776432 1246788999999999999999986 44454222
Q ss_pred ---HHHHHhCCCeEeCCChhhhc
Q psy6380 83 ---AKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 83 ---a~~~~~~gi~FIGP~~~~m~ 102 (103)
...+++.||.++|+++++++
T Consensus 118 l~~~g~Le~~GI~~~G~~~~ai~ 140 (1102)
T PLN02735 118 LAESGILEKYGVELIGAKLDAIK 140 (1102)
T ss_pred HhhhCHHHHCCCEEECCCHHHHH
Confidence 24568899999999999875
No 23
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.32 E-value=0.00041 Score=63.21 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=62.1
Q ss_pred cCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc-CCCC--HHH
Q psy6380 7 PCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF-LSER--EDF 82 (103)
Q Consensus 7 ~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF-LSEn--~~F 82 (103)
.-..-..+|+++| ++|++-+.++ .-.....++|+..-.+ ++.+.|++++++.+.|+|+|++|. ...+ ..+
T Consensus 29 sg~~~~~aLke~G~~vi~v~~~p~-~~~~~~~~aD~~y~~p-----~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l 102 (1066)
T PRK05294 29 SGTQACKALREEGYRVVLVNSNPA-TIMTDPEMADATYIEP-----ITPEFVEKIIEKERPDAILPTMGGQTALNLAVEL 102 (1066)
T ss_pred hHHHHHHHHHHcCCEEEEEcCCcc-cccCCcccCCEEEECC-----CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHH
Confidence 3344567999999 7777766654 2223344566543212 468999999999999999999874 2222 223
Q ss_pred H--HHHHhCCCeEeCCChhhhc
Q psy6380 83 A--KAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 83 a--~~~~~~gi~FIGP~~~~m~ 102 (103)
. ..+++.|+.++||++++++
T Consensus 103 ~~~~~le~~Gv~~~g~~~~~i~ 124 (1066)
T PRK05294 103 AESGVLEKYGVELIGAKLEAID 124 (1066)
T ss_pred HhhCHHHHCCCEEECCCHHHHH
Confidence 2 2468899999999999875
No 24
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.31 E-value=0.00032 Score=63.98 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=66.9
Q ss_pred ccCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHH
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAK 84 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~ 84 (103)
|-|..-..+|++.| ++|+|-+.++ .-+....++|...- .-++.+.|++++++.++|+|.|++|-.. -..+++
T Consensus 575 ~~~v~~i~al~~~G~~vI~v~~npe-tvs~d~~~~D~ly~-----ep~~~e~vl~i~~~e~idgVI~~~gg~~-~~~la~ 647 (1050)
T TIGR01369 575 YCCVHAVLALRELGYETIMINYNPE-TVSTDYDTSDRLYF-----EPLTFEDVMNIIELEKPEGVIVQFGGQT-PLNLAK 647 (1050)
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCc-cccccccccceEEE-----ecCCHHHHHHHHhhcCCCEEEEccCcHh-HHHHHH
Confidence 55666688999999 8887777665 32333445554321 1245899999999999999999998532 235889
Q ss_pred HHHhCCCeEeCCChhhhc
Q psy6380 85 AVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 85 ~~~~~gi~FIGP~~~~m~ 102 (103)
.|++.|+.++|+++++++
T Consensus 648 ~le~~Gi~i~G~s~~~i~ 665 (1050)
T TIGR01369 648 ALEEAGVPILGTSPESID 665 (1050)
T ss_pred HHHHCCCcEECCCHHHHH
Confidence 999999999999999874
No 25
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.27 E-value=0.001 Score=53.66 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc-CCCCHHHHHHHHhCCC
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF-LSEREDFAKAVIGAAL 91 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF-LSEn~~Fa~~~~~~gi 91 (103)
.+|++.|..+.++.... +......++.. .-.-++.|.+.|+++|++.++|+|+||... +. ..+++.+++.|+
T Consensus 17 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~--~~~~~~l~~~gi 89 (423)
T TIGR00877 17 WKLAQSPLVKYVYVAPG--NAGTARLAKNK---NVAISITDIEALVEFAKKKKIDLAVIGPEAPLV--LGLVDALEEAGI 89 (423)
T ss_pred HHHHhCCCccEEEEECC--CHHHhhhcccc---cccCCCCCHHHHHHHHHHhCCCEEEECCchHHH--HHHHHHHHHCCC
Confidence 46777775555554443 23332222111 111367899999999999999999998742 21 457889999999
Q ss_pred eEeCCChhhhc
Q psy6380 92 EFIGPTTNVLK 102 (103)
Q Consensus 92 ~FIGP~~~~m~ 102 (103)
.++||++++++
T Consensus 90 ~~~g~~~~~~~ 100 (423)
T TIGR00877 90 PVFGPTKEAAQ 100 (423)
T ss_pred eEECCCHHHHH
Confidence 99999998764
No 26
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.01 E-value=0.0011 Score=60.66 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=66.6
Q ss_pred ccCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHH
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAK 84 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~ 84 (103)
|-|-.-..+|++.| ++|.+-..++ .-+.....+|...-. -++.+.|++++++.++|+|.|++|--. -..+++
T Consensus 576 y~~v~~~~aLk~~G~~vI~vn~npe-tvs~~~~~aD~~y~e-----p~~~e~vl~I~~~e~~dgVI~~~g~~~-~~~la~ 648 (1068)
T PRK12815 576 YSSVHAAFALKKEGYETIMINNNPE-TVSTDYDTADRLYFE-----PLTLEDVLNVAEAENIKGVIVQFGGQT-AINLAK 648 (1068)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCcc-ccccccccCceEEEc-----cCCHHHHHHHHhhcCCCEEEEecCcHH-HHHHHH
Confidence 44444567999999 7777777766 444445556653221 135899999999999999999987542 235788
Q ss_pred HHHhCCCeEeCCChhhhc
Q psy6380 85 AVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 85 ~~~~~gi~FIGP~~~~m~ 102 (103)
.+++.|+.++|+++++++
T Consensus 649 ~le~~Gi~ilG~s~e~i~ 666 (1068)
T PRK12815 649 GLEEAGLTILGTSPDTID 666 (1068)
T ss_pred HHHHCCCeEECCcHHHHH
Confidence 899999999999999875
No 27
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=96.86 E-value=0.0052 Score=48.61 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=57.3
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..++++.| +++++-...+ +.-.+.||+..-. +|.|.+.|+++|++.++|+|.|+...++... .+.+++.|
T Consensus 15 ~~aa~~~G~~v~~~d~~~~---~~~~~~ad~~~~~----~~~d~~~l~~~~~~~~id~v~~~~e~v~~~~--~~~l~~~g 85 (380)
T TIGR01142 15 AIEAQRLGVEVIAVDRYAN---APAMQVAHRSYVI----NMLDGDALRAVIEREKPDYIVPEIEAIATDA--LFELEKEG 85 (380)
T ss_pred HHHHHHcCCEEEEEeCCCC---CchhhhCceEEEc----CCCCHHHHHHHHHHhCCCEEEeccCccCHHH--HHHHHhcC
Confidence 35789999 5555544433 3444567765431 3789999999999999999999887765432 35678888
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+ +++|++++++
T Consensus 86 ~-~~~~~~~~~~ 96 (380)
T TIGR01142 86 Y-FVVPNARATK 96 (380)
T ss_pred C-eeCCCHHHHH
Confidence 6 4678887754
No 28
>PLN02257 phosphoribosylamine--glycine ligase
Probab=96.85 E-value=0.0024 Score=53.28 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=44.1
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCC---HHHHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSER---EDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn---~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-++.|.+.|+++|++.++|.|++|+ |. +.+++.+++.|+.++||+.++++
T Consensus 46 ~~~~d~~~l~~~a~~~~id~vvvg~----E~~lv~~~~d~l~~~Gi~~~Gps~~aa~ 98 (434)
T PLN02257 46 LDISDSAAVISFCRKWGVGLVVVGP----EAPLVAGLADDLVKAGIPTFGPSAEAAA 98 (434)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECC----chHHHHHHHHHHHHCCCCEECChHHHHH
Confidence 4688999999999999999999996 55 56778888999999999998865
No 29
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.71 E-value=0.0022 Score=53.14 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=43.9
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHH---HHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSERED---FAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~---Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-+++|.+.|+++|++.++|.|.+|. |++- +++.+++.||.++||+..+++
T Consensus 52 ~~~~d~~~l~~~a~~~~iD~Vv~g~----E~~l~~glad~~~~~Gip~~Gp~~~aa~ 104 (426)
T PRK13789 52 FSILDKSSVQSFLKSNPFDLIVVGP----EDPLVAGFADWAAELGIPCFGPDSYCAQ 104 (426)
T ss_pred cCcCCHHHHHHHHHHcCCCEEEECC----chHHHHHHHHHHHHcCCCcCCCHHHHHH
Confidence 4789999999999999999999987 7764 668888999999999988754
No 30
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=96.67 E-value=0.0092 Score=50.72 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHH---HHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSERED---FAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~---Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
.+..|.+.|+++|++.++|+|+||. |.+- .++.+++.|+.++||++++.+
T Consensus 53 ~~~~d~~~l~~~a~~~~id~Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~ 105 (486)
T PRK05784 53 GNINSPEEVKKVAKEVNPDLVVIGP----EEPLFAGVADVLREEGFPVFGASSKCAR 105 (486)
T ss_pred cCCCCHHHHHHHHHHhCCCEEEECC----chHHHHHHHHHHHhCCCCEECCcHHHHH
Confidence 4567899999999999999999985 8874 457788999999999998864
No 31
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=96.65 E-value=0.0023 Score=51.97 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=43.6
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-++.|.+.|+++|++.++|.|.+|...-. -..+++.++++||.++||++++++
T Consensus 11 ~~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~ 63 (379)
T PRK13790 11 ISESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQ 63 (379)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHH
Confidence 46788999999999999999999885311 125677899999999999998864
No 32
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=96.60 E-value=0.0046 Score=50.20 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=54.5
Q ss_pred hHHHHHcC--cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHH
Q psy6380 12 YDSLIQAG--TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g--~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~ 86 (103)
..+|++.+ .+|.+ ++. +......++. -.-++.|.+.|+++|++.++|.|.+|. |.+ ..++.+
T Consensus 16 ~~~l~~~~~~~~i~~-~~~---n~g~~~~~~~-----~~~~~~d~~~l~~~~~~~~id~vi~~~----e~~l~~~~~~~l 82 (420)
T PRK00885 16 AWKLAQSPLVEKVYV-APG---NAGTALLAEN-----VVIDVTDIEALVAFAKEEGIDLTVVGP----EAPLVAGIVDAF 82 (420)
T ss_pred HHHHHhCCCCCEEEE-eCC---CHHHHhhccc-----cCCCCCCHHHHHHHHHHhCCCEEEECC----chHHHHHHHHHH
Confidence 35677764 45444 432 3333333321 114678999999999999999999974 544 557788
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
++.|+.++||++++++
T Consensus 83 ~~~gi~~~g~~~~~~~ 98 (420)
T PRK00885 83 RAAGLPIFGPTKAAAQ 98 (420)
T ss_pred HHCCCcEECcCHHHHH
Confidence 8999999999998764
No 33
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.55 E-value=0.0031 Score=57.85 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=59.5
Q ss_pred ccCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccC-CCCHHH-
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFL-SEREDF- 82 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFL-SEn~~F- 82 (103)
|..+.-..+|+++| ++|++-+.+. .-..-..++|...- ..++.+.|++++++.+.|+|+|.+|.- ..+-..
T Consensus 28 ~sg~q~~~aL~e~G~~vi~v~~np~-~~~~d~~~ad~~y~-----ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~ 101 (1068)
T PRK12815 28 YSGTQACLALKEEGYQVVLVNPNPA-TIMTDPAPADTVYF-----EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVK 101 (1068)
T ss_pred hHHHHHHHHHHHcCCEEEEEeCCcc-hhhcCcccCCeeEE-----CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHH
Confidence 34455668999999 7777766554 11111123443211 124679999999999999999988732 233222
Q ss_pred -H--HHHHhCCCeEeCCChhhhc
Q psy6380 83 -A--KAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 83 -a--~~~~~~gi~FIGP~~~~m~ 102 (103)
. ..+++.|+.++||++++++
T Consensus 102 l~~~g~Le~~gv~l~g~~~~~i~ 124 (1068)
T PRK12815 102 LHEDGILEQYGVELLGTNIEAIQ 124 (1068)
T ss_pred HHhcCHHHHCCCEEECCCHHHHH
Confidence 1 2467889999999999875
No 34
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=96.53 E-value=0.007 Score=46.69 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=55.1
Q ss_pred hHHHHHcC---cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc-CCCCHHHHHHHH
Q psy6380 12 YDSLIQAG---TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF-LSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g---~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF-LSEn~~Fa~~~~ 87 (103)
..+|+++| ++|++-+. .++.....+|+..-.+....=-.++.|++++++.++|+|.|+... +.--+..++.++
T Consensus 16 ~~~l~~~~~g~~vi~~d~~---~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d~~~~~~a~~~~~l~ 92 (326)
T PRK12767 16 VKALKKSLLKGRVIGADIS---ELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLIDPELPLLAQNRDRFE 92 (326)
T ss_pred HHHHHHhccCCEEEEECCC---CcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHHH
Confidence 46889995 44444333 233444566754332222111135899999999999999998642 111122345677
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.++||++++++
T Consensus 93 ~~g~~~~~~~~~~~~ 107 (326)
T PRK12767 93 EIGVKVLVSSKEVIE 107 (326)
T ss_pred HcCcEEEeCCHHHHH
Confidence 889999999998764
No 35
>PRK14016 cyanophycin synthetase; Provisional
Probab=96.31 E-value=0.0013 Score=58.05 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=36.0
Q ss_pred cccccceecccCCCCCCCCCCCChHHHHHHHHHcCCce--------ecCCCccCCCCH
Q psy6380 31 EDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDA--------IHPGYGFLSERE 80 (103)
Q Consensus 31 ~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~da--------IHPGYGFLSEn~ 80 (103)
++..+++.+|+...++++. ..|+++|++.|+++ |||||||+||.-
T Consensus 144 ~~~~~~~~~~~~~~lgpst-----~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~i 196 (727)
T PRK14016 144 AALARLRELDEDERLGPST-----AAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRRI 196 (727)
T ss_pred HHHHHHHHHHHhcccCCCH-----HHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHHH
Confidence 5677778888766654443 49999999999988 999999999743
No 36
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.31 E-value=0.0064 Score=55.61 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=64.2
Q ss_pred ccCCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHH
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAK 84 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~ 84 (103)
|-|..-..+|++.| ++|++-..++ .-+.-..++|...-. -++.+.+++++++.+.|+|.+-+|--.. -.+++
T Consensus 575 y~~v~~i~alk~~G~~vi~v~~npe-tvs~~~~~aD~~y~e-----~~~~e~v~~i~~~e~~dgVi~~~g~~~~-~~la~ 647 (1066)
T PRK05294 575 YCCVHAVLALREAGYETIMVNCNPE-TVSTDYDTSDRLYFE-----PLTLEDVLEIIEKEKPKGVIVQFGGQTP-LKLAK 647 (1066)
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCcc-ccccccchhhheeec-----CCCHHHHHHHHHHcCCCEEEEEeCchhH-HHHHH
Confidence 55555678999999 7777766655 222223455543221 1258999999999999999987762211 26788
Q ss_pred HHHhCCCeEeCCChhhhc
Q psy6380 85 AVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 85 ~~~~~gi~FIGP~~~~m~ 102 (103)
.+++.|+.++|+++++++
T Consensus 648 ~le~~Gi~ilg~s~~ai~ 665 (1066)
T PRK05294 648 ALEAAGVPILGTSPDAID 665 (1066)
T ss_pred HHHHCCCceeCCCHHHHH
Confidence 999999999999998875
No 37
>PRK06849 hypothetical protein; Provisional
Probab=96.04 E-value=0.0056 Score=49.11 Aligned_cols=88 Identities=19% Similarity=0.107 Sum_probs=54.0
Q ss_pred chHHHHHcC-cEEEEeecccccccccceecccCCCCCCCC----CCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHH
Q psy6380 11 NYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVA----AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKA 85 (103)
Q Consensus 11 ~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~----sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~ 85 (103)
=..+|+++| +.+++-+..+ .-+.+.+..|+....++++ .| ++.|++++++.++|.|.|+....-..+...+.
T Consensus 20 iar~l~~~G~~Vi~~d~~~~-~~~~~s~~~d~~~~~p~p~~d~~~~--~~~L~~i~~~~~id~vIP~~e~~~~~a~~~~~ 96 (389)
T PRK06849 20 LARLFHNAGHTVILADSLKY-PLSRFSRAVDGFYTIPSPRWDPDAY--IQALLSIVQRENIDLLIPTCEEVFYLSHAKEE 96 (389)
T ss_pred HHHHHHHCCCEEEEEeCCch-HHHHHHHhhhheEEeCCCCCCHHHH--HHHHHHHHHHcCCCEEEECChHHHhHHhhhhh
Confidence 357899999 6665555543 2123334445543222222 23 68999999999999999998743111111223
Q ss_pred HHhCCCeEeCCChhhhc
Q psy6380 86 VIGAALEFIGPTTNVLK 102 (103)
Q Consensus 86 ~~~~gi~FIGP~~~~m~ 102 (103)
+ +.++.+.+|+.++++
T Consensus 97 l-~~~~~v~~~~~~~~~ 112 (389)
T PRK06849 97 L-SAYCEVLHFDFELLL 112 (389)
T ss_pred h-cCCcEEEcCCHHHHH
Confidence 3 346888999998875
No 38
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=95.74 E-value=0.051 Score=43.24 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=54.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..++++.| +++++...++ ......+|+... -++.|.+.|+++|++.++|+|.|+...++ ......+++.|
T Consensus 28 ~~a~~~~G~~v~~~~~~~~---~~~~~~ad~~~~----~~~~d~~~l~~~~~~~~id~vi~~~e~~~--~~~~~~l~~~g 98 (395)
T PRK09288 28 AIEAQRLGVEVIAVDRYAN---APAMQVAHRSHV----IDMLDGDALRAVIEREKPDYIVPEIEAIA--TDALVELEKEG 98 (395)
T ss_pred HHHHHHCCCEEEEEeCCCC---CchHHhhhheEE----CCCCCHHHHHHHHHHhCCCEEEEeeCcCC--HHHHHHHHhcC
Confidence 45789999 5555555444 233345665322 23678999999999999999999876543 23445677788
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+.. .|++++++
T Consensus 99 ~~~-~~~~~a~~ 109 (395)
T PRK09288 99 FNV-VPTARATR 109 (395)
T ss_pred Cee-CCCHHHHH
Confidence 764 48887653
No 39
>PRK07206 hypothetical protein; Provisional
Probab=95.70 E-value=0.046 Score=43.88 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=50.9
Q ss_pred hHHHHHcC-cEEEEeecccccccc---cceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCC-HHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSS---LWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSER-EDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~---~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn-~~Fa~~~ 86 (103)
..+|++.| ++|+|.+..+ .+.. ....+|.... -.+.|++.|++++++.++|+|.||. |. ..++..+
T Consensus 18 ~~a~~~~G~~~v~v~~~~~-~~~~~~~~~~~~~~~~~----i~~~~~~~l~~~~~~~~~d~vi~~~----e~~~~~~a~l 88 (416)
T PRK07206 18 APAFKKRGIEPIAVTSSCL-LDPYYYASFDTSDFIEV----IINGDIDDLVEFLRKLGPEAIIAGA----ESGVELADRL 88 (416)
T ss_pred HHHHHHcCCeEEEEEcCCC-CchhhhcccCcccchhh----hcCCCHHHHHHHHHHcCCCEEEECC----CccHHHHHHH
Confidence 46899999 8888888765 2221 1222332211 1237899999999999999999984 44 4455555
Q ss_pred Hh-CCCeEeCCChhhh
Q psy6380 87 IG-AALEFIGPTTNVL 101 (103)
Q Consensus 87 ~~-~gi~FIGP~~~~m 101 (103)
.+ .|+. .|++++++
T Consensus 89 ~~~l~l~-~~~~~~~~ 103 (416)
T PRK07206 89 AEILTPQ-YSNDPALS 103 (416)
T ss_pred HHhcCCC-cCCChhhH
Confidence 43 3443 36666654
No 40
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=95.52 E-value=0.026 Score=46.28 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=58.4
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCCCC-CCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPP-VAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~-~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi 91 (103)
.+|++.+.-..+-|+.+ .+.....+||+..-.|. ...| ++-++++|++.++|+++||+--.- =+...+..++.|+
T Consensus 16 ~~lr~~~~~~i~~sh~~-~~~~~~~~aD~~~~eP~~~~~y--v~~~l~~C~~~~Idv~~P~~~~~~-l~~~r~~F~a~Gv 91 (329)
T PF15632_consen 16 RSLRANRDFTIIASHRD-PRAPILYAADEAYLEPADGEEY--VDWCLDFCKEHGIDVFVPGRNREL-LAAHRDEFEALGV 91 (329)
T ss_pred HHHHcCCCeEEEEEeCC-CCchHHhcCceeeecCCCHHHH--HHHHHHHHHHhCCeEEEcCccHHH-HHHHHHHHHHhCC
Confidence 44555455555566666 66888899998644333 3355 678999999999999999995211 1222344567898
Q ss_pred eEeC-CChhhhc
Q psy6380 92 EFIG-PTTNVLK 102 (103)
Q Consensus 92 ~FIG-P~~~~m~ 102 (103)
+.+= |+.++|+
T Consensus 92 ~l~~~~~~~~l~ 103 (329)
T PF15632_consen 92 KLLTASSAETLE 103 (329)
T ss_pred EEEecCCHHHHH
Confidence 8776 6677775
No 41
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=95.46 E-value=0.059 Score=44.91 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=54.2
Q ss_pred HHHHHcCc-EEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc-CCCCHHHHHHHHhCC
Q psy6380 13 DSLIQAGT-TIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF-LSEREDFAKAVIGAA 90 (103)
Q Consensus 13 ~~~~~~g~-tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF-LSEn~~Fa~~~~~~g 90 (103)
..|++.|. .+++.. . .+..-...+|... .-+.+|.+.|+++|++.++|.|.+|..- |+. ..+..+++.|
T Consensus 19 ~~l~~~g~~v~~~~~--~-~Npg~~~~a~~~~----~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~~--~~~~~l~~~G 89 (435)
T PRK06395 19 RAIKRSGAILFSVIG--H-ENPSIKKLSKKYL----FYDEKDYDLIEDFALKNNVDIVFVGPDPVLAT--PLVNNLLKRG 89 (435)
T ss_pred HHHHhCCCeEEEEEC--C-CChhhhhccccee----ecCCCCHHHHHHHHHHhCCCEEEECCChHHHH--HHHHHHHHCC
Confidence 35788883 233322 1 2334333444311 1346789999999999999999998763 432 4566777889
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+..+||+.++.+
T Consensus 90 i~v~gps~~~a~ 101 (435)
T PRK06395 90 IKVASPTMEAAM 101 (435)
T ss_pred CcEECCCHHHHH
Confidence 999999998754
No 42
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.38 E-value=0.033 Score=38.59 Aligned_cols=86 Identities=21% Similarity=0.228 Sum_probs=46.1
Q ss_pred chHHHHHcCcEEEEeeccc-c--cccccceecccCCC-CCCCCCCCC---hHHHHHHHHHcCCceecCCCccCCCCHHHH
Q psy6380 11 NYDSLIQAGTTIIILSKRK-L--EDSSLWLLRDQGKR-MPPVAAYLN---NPEIICIANNINVDAIHPGYGFLSEREDFA 83 (103)
Q Consensus 11 ~~~~~~~~g~tvai~t~~d-l--~~a~~~~~AD~~~~-~~~~~sYln---i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa 83 (103)
-+..|++.|-.|.-+.+.. - ....|-.++|. +. ..-.--+++ +..+++-+.+.|+.+||---| ++++++.
T Consensus 19 v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~-p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g--~~~~~~~ 95 (116)
T PF13380_consen 19 VLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEI-PEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG--AESEELI 95 (116)
T ss_dssp HHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGC-SST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT--S--HHHH
T ss_pred HHHHHHhCCCEEEEECCCceEECcEEeeccccCC-CCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc--hHHHHHH
Confidence 3567889994444444432 1 12233344432 11 000111333 455666777778888665555 8999999
Q ss_pred HHHHhCCCeEeCCChh
Q psy6380 84 KAVIGAALEFIGPTTN 99 (103)
Q Consensus 84 ~~~~~~gi~FIGP~~~ 99 (103)
+.++++||+++||+.-
T Consensus 96 ~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 96 EAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHHTT-EEEESS-H
T ss_pred HHHHHcCCEEEeCCcc
Confidence 9999999999999853
No 43
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.16 E-value=0.11 Score=41.10 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=54.5
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.++++.|-.|++++.. .++...+++|+..- .+|.|.+.|.++|++ +|.|.+....++ ....+.+++.|+.
T Consensus 16 ~aa~~lG~~v~~~d~~--~~~p~~~~ad~~~~----~~~~d~~~i~~~a~~--~dvit~e~e~i~--~~~l~~l~~~g~~ 85 (352)
T TIGR01161 16 LAARPLGIKVHVLDPD--ANSPAVQVADHVVL----APFFDPAAIRELAES--CDVITFEFEHVD--VEALEKLEARGVK 85 (352)
T ss_pred HHHHHcCCEEEEECCC--CCCChhHhCceeEe----CCCCCHHHHHHHHhh--CCEEEeCcCcCC--HHHHHHHHhCCCe
Confidence 4678899445555443 34566677887542 468999999999986 567877664443 3456778888865
Q ss_pred EeCCChhhhc
Q psy6380 93 FIGPTTNVLK 102 (103)
Q Consensus 93 FIGP~~~~m~ 102 (103)
++|++++++
T Consensus 86 -~~p~~~~~~ 94 (352)
T TIGR01161 86 -LFPSPDALA 94 (352)
T ss_pred -ECCCHHHHH
Confidence 779998875
No 44
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=94.64 E-value=0.099 Score=40.15 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=36.3
Q ss_pred HHHHHHHcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 57 IICIANNINVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+++..+..+.|.|.+.+ |--+|+..++..|+..|+.++|++..+++
T Consensus 48 ~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~ 94 (304)
T PRK01372 48 IAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASA 94 (304)
T ss_pred hHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHH
Confidence 34444556889999875 45678999999999999999999887753
No 45
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=94.52 E-value=0.048 Score=46.89 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=44.6
Q ss_pred CcchHHH---HHcC-cEEEEeecccccccccceecccCCCC--CCCCCCCCh--HHHHHHHHHcCCceecCCCccCCCCH
Q psy6380 9 KDNYDSL---IQAG-TTIIILSKRKLEDSSLWLLRDQGKRM--PPVAAYLNN--PEIICIANNINVDAIHPGYGFLSERE 80 (103)
Q Consensus 9 ~~~~~~~---~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~--~~~~sYlni--~~Ii~~A~~~g~daIHPGYGFLSEn~ 80 (103)
.+|-.+. .+.| +++.+++..| +++. ||...+ ++... ||. +.|+++|++.|++++| +.||+.
T Consensus 198 ~~N~~Ai~fY~klGf~~~~~y~~~d-~~~~-----~~~~~~g~~~~~~-l~~y~~~Ii~~a~~~Gi~~~~----~~se~~ 266 (547)
T TIGR03103 198 HDNEQAIALYEKLGFRRIPVFALKR-KNAI-----NERLFSGPAPEAD-LNPYARIIVDEARRRGIEVEV----LDAEGG 266 (547)
T ss_pred CCCHHHHHHHHHCCCEEeeEEEEec-cCCc-----CcccccCCCcccc-cCHHHHHHHHHHHHcCCcEEE----ECCCCC
Confidence 3554433 3779 9999999987 5544 664322 22223 999 9999999999999999 556766
Q ss_pred HH
Q psy6380 81 DF 82 (103)
Q Consensus 81 ~F 82 (103)
.|
T Consensus 267 ~~ 268 (547)
T TIGR03103 267 LF 268 (547)
T ss_pred EE
Confidence 66
No 46
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=94.29 E-value=0.16 Score=39.03 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=33.7
Q ss_pred cCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 64 INVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 64 ~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
.+.|+|+|.. |..+|+..++..++..|+.|+|+++.+++
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~ 101 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASA 101 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHH
Confidence 5789999964 57789999999999999999999988764
No 47
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.74 E-value=0.31 Score=42.36 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.++++.|-.|+++.. + .++.....+|+..- .+|.|.+.|+++|++ +|.|....-.. +.++.+.+++.|+.
T Consensus 39 ~aA~~lG~~Vi~ld~-~-~~apa~~~AD~~~v----~~~~D~~~l~~~a~~--~dvIt~e~e~v--~~~~l~~le~~gi~ 108 (577)
T PLN02948 39 QAASQMGIKVKVLDP-L-EDCPASSVAARHVV----GSFDDRAAVREFAKR--CDVLTVEIEHV--DVDTLEALEKQGVD 108 (577)
T ss_pred HHHHHCCCEEEEEeC-C-CCCchhhhCceeee----CCCCCHHHHHHHHHH--CCEEEEecCCC--CHHHHHHHHhcCCc
Confidence 467889944444433 2 34566666776443 468999999999998 66775432111 35677888999976
Q ss_pred EeCCChhhhc
Q psy6380 93 FIGPTTNVLK 102 (103)
Q Consensus 93 FIGP~~~~m~ 102 (103)
+||++++++
T Consensus 109 -v~ps~~al~ 117 (577)
T PLN02948 109 -VQPKSSTIR 117 (577)
T ss_pred -cCCCHHHHH
Confidence 689998875
No 48
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.32 E-value=0.38 Score=38.79 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=52.1
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.++++.|-.|+++.+.. ++....++|+... .+|.|.+.+.++|+ .+|+|.+.. -.-+.+..+.+++. .
T Consensus 19 ~aa~~lG~~v~~~d~~~--~~pa~~~ad~~~~----~~~~D~~~l~~~a~--~~dvit~e~--e~i~~~~l~~l~~~--~ 86 (372)
T PRK06019 19 LAAAPLGYKVIVLDPDP--DSPAAQVADEVIV----ADYDDVAALRELAE--QCDVITYEF--ENVPAEALDALAAR--V 86 (372)
T ss_pred HHHHHcCCEEEEEeCCC--CCchhHhCceEEe----cCCCCHHHHHHHHh--cCCEEEeCc--CCCCHHHHHHHhcC--C
Confidence 47788895566665432 4455566776443 35899999999998 678886543 33345555566565 4
Q ss_pred EeCCChhhhc
Q psy6380 93 FIGPTTNVLK 102 (103)
Q Consensus 93 FIGP~~~~m~ 102 (103)
.++|++++++
T Consensus 87 ~~~p~~~~~~ 96 (372)
T PRK06019 87 PVPPGPDALA 96 (372)
T ss_pred eeCcCHHHHH
Confidence 5889999875
No 49
>PRK06524 biotin carboxylase-like protein; Validated
Probab=93.10 E-value=0.082 Score=45.75 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=39.5
Q ss_pred CCCCCC-ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 47 PVAAYL-NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 47 ~~~sYl-ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..++|| .-..+++..++.|-- |=--|||||..|+..|+..||.++||++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~---~~~~fl~~DG~iQ~lLE~lGIpy~gP~a~asa 138 (493)
T PRK06524 85 DVCNYLLRHPETLEFIKRRGPG---GKACFVMFDEETEALARQAGLEVMHPPAELRH 138 (493)
T ss_pred HHhhhhhcCHHHHHHHHhhCCC---CceEEecCCHHHHHHHHHCCCeEECcCHHHHH
Confidence 345564 455677777776521 11239999999999999999999999998864
No 50
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=92.04 E-value=0.16 Score=35.34 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCHH---HHHHHHhCCCeEeCCChhhh
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSERED---FAKAVIGAALEFIGPTTNVL 101 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~---Fa~~~~~~gi~FIGP~~~~m 101 (103)
+..|.+.|++.|++.++|.|..|- |.|- +++.++++||...||+.++-
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGP----E~pL~~Gl~D~l~~~gi~vfGP~k~aA 97 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGP----EAPLVAGLADALRAAGIPVFGPSKEAA 97 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESS----HHHHHTTHHHHHHHTT-CEES--HHHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECC----hHHHHHHHHHHHHHCCCcEECcCHHHH
Confidence 678899999999999999999997 5553 57788999999999998764
No 51
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=91.19 E-value=0.41 Score=37.43 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=34.1
Q ss_pred HcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 63 NINVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 63 ~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+.+.|.|+++. |.-.|+..++..|+..||.++|+++.+++
T Consensus 54 ~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~ 94 (296)
T PRK14569 54 ELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSV 94 (296)
T ss_pred ccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHH
Confidence 45789888876 56779999999999999999999988764
No 52
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=91.07 E-value=0.23 Score=39.49 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCceecCC-CccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 65 NVDAIHPG-YGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 65 g~daIHPG-YGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
++|.|+|. .|+..|+..++..|+..||.|+|++..++.
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~ 119 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASA 119 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHH
Confidence 78999999 589999999999999999999999987753
No 53
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=90.53 E-value=1.1 Score=38.25 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=56.8
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCc-cCCCCHHHHH----H
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYG-FLSEREDFAK----A 85 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~----~ 85 (103)
-.+||++| ++|-|-+.+- .-..-..+||...-.| +..+-+..++++-..|+|.|..| --..|....- .
T Consensus 22 c~aLkeeg~~vvlvnsnpA-ti~td~e~AD~~y~eP-----~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~ 95 (400)
T COG0458 22 CKALKEEGYGVVLVNSNPA-TIMTDPELADKVYIEP-----ITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGV 95 (400)
T ss_pred HHHHHhcCCeEEEEcCCCc-cccCCchhcceeeeec-----CcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcc
Confidence 36899999 7777766653 2222234455432211 23788899999999999999998 4455543321 1
Q ss_pred HHhCCCeEeCCChhhhc
Q psy6380 86 VIGAALEFIGPTTNVLK 102 (103)
Q Consensus 86 ~~~~gi~FIGP~~~~m~ 102 (103)
|++.|+..||-+.++++
T Consensus 96 l~~~gV~vvgs~~eaI~ 112 (400)
T COG0458 96 LEKYGVEVVGSDPEAIE 112 (400)
T ss_pred hhhcCCEEEecCHHHhh
Confidence 23569999999999886
No 54
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=84.93 E-value=2.6 Score=32.58 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.6
Q ss_pred CCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 65 NVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 65 g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..|.|++-. |...|+..++..|+..|+.++|+++.++.
T Consensus 53 ~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~ 91 (299)
T PRK14571 53 SFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSM 91 (299)
T ss_pred CCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHH
Confidence 467766653 34468889999999999999999988753
No 55
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=81.19 E-value=3 Score=34.93 Aligned_cols=45 Identities=13% Similarity=0.346 Sum_probs=33.2
Q ss_pred hHHHHHHHHHcCCceec---CCCccCCC-----CHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIH---PGYGFLSE-----REDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH---PGYGFLSE-----n~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++-|.+.|+.+|+ -|++...+ ..++.+.++++||+++||+.
T Consensus 77 ~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc 129 (447)
T TIGR02717 77 VPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNC 129 (447)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCe
Confidence 56677777888988764 35555443 36788888999999999974
No 56
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=80.92 E-value=2.4 Score=33.56 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcCCcee-cCCCccCCCCHHHHHHHHhCCCeE---eCCCh
Q psy6380 54 NPEIICIANNINVDAI-HPGYGFLSEREDFAKAVIGAALEF---IGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI-HPGYGFLSEn~~Fa~~~~~~gi~F---IGP~~ 98 (103)
+++.++-|++.|+|.| .|-.- ..|..+|.+.|.++||.+ +-|++
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4889999999999985 45544 478889999999998754 45554
No 57
>PLN02591 tryptophan synthase
Probab=80.19 E-value=2.6 Score=33.20 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCeE---eCCChh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALEF---IGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~F---IGP~~~ 99 (103)
+++.++.|++.|+|. |.|..-+ .|..+|.+.|+++||.+ +-|++.
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~-ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPL-EETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCH-HHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 488999999999986 6777765 88999999999998764 456553
No 58
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.17 E-value=4.8 Score=29.75 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
...+.+++.+++.|+|.||-+-+ +..++.+.+.+.++.++
T Consensus 67 ~~~~~~~~~~~~~g~d~v~l~~~---~~~~~~~~~~~~~i~~i 106 (236)
T cd04730 67 PDFEALLEVALEEGVPVVSFSFG---PPAEVVERLKAAGIKVI 106 (236)
T ss_pred cCHHHHHHHHHhCCCCEEEEcCC---CCHHHHHHHHHcCCEEE
Confidence 46788999999999999997655 67888999988777654
No 59
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=80.06 E-value=1.9 Score=34.38 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=34.7
Q ss_pred cCCceecCC-CccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 64 INVDAIHPG-YGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 64 ~g~daIHPG-YGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
.++|.|+|- .|...|+-.++..++..||.++|++..++.
T Consensus 89 ~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asa 128 (343)
T PRK14568 89 IRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSA 128 (343)
T ss_pred ccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHH
Confidence 578999998 788899999999999999999999987753
No 60
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=78.49 E-value=8.1 Score=23.47 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCCChHHHHHHHHHcCCceec-CCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIH-PGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIH-PGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+..+++.+++.|++.|.++|- --.+-+...+.|.+.+.+.||.+|
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEE
Confidence 5567899999999999999862 111223344688888888888764
No 61
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=78.25 E-value=3.6 Score=32.22 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=38.6
Q ss_pred CCCCh------HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe---EeCCChh
Q psy6380 50 AYLNN------PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE---FIGPTTN 99 (103)
Q Consensus 50 sYlni------~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~---FIGP~~~ 99 (103)
.|.|. ++.++.+++.|+|.|.--.--..|..+|.+.|.++|+. ++-|.+.
T Consensus 94 ~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 94 TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 57887 99999999999998433343447778899999999954 7777653
No 62
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=78.12 E-value=3.3 Score=31.94 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
...+..|++.+++.+|+.|.++.-++++.+.+.++|+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~Gl~v~ 254 (282)
T cd08605 215 EAAIQVALEGGLQGIVSEVKVLLRNPTAVSLVKASGLELG 254 (282)
T ss_pred HHHHHHHHHcCCceEEecHHHhhcCcHHHHHHHHcCcEEE
Confidence 4456788899999999999887778899999999998764
No 63
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=75.99 E-value=12 Score=27.86 Aligned_cols=81 Identities=16% Similarity=0.090 Sum_probs=43.5
Q ss_pred HHHHcC-cEEEEe------ecccc-cccccceecccCCCCCC-CCCCCChHHHHHHHHHcCCcee--cCCCccCC-----
Q psy6380 14 SLIQAG-TTIIIL------SKRKL-EDSSLWLLRDQGKRMPP-VAAYLNNPEIICIANNINVDAI--HPGYGFLS----- 77 (103)
Q Consensus 14 ~~~~~g-~tvai~------t~~dl-~~a~~~~~AD~~~~~~~-~~sYlni~~Ii~~A~~~g~daI--HPGYGFLS----- 77 (103)
...+.| ..|.|. +.+.+ .+...+...+.+...+. .......-.-++.|.+.||++| .--+|-+.
T Consensus 29 ~~~~~g~~av~v~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~ 108 (235)
T cd00958 29 LAAEGGADAVALTKGIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREML 108 (235)
T ss_pred HHHhcCCCEEEeChHHHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHH
Confidence 344556 677776 66665 23233333333322221 2222223333677888999876 55455444
Q ss_pred -CCHHHHHHHHhCCCeEe
Q psy6380 78 -EREDFAKAVIGAALEFI 94 (103)
Q Consensus 78 -En~~Fa~~~~~~gi~FI 94 (103)
+-..+.+.|.+.|+.||
T Consensus 109 ~~i~~v~~~~~~~g~~~i 126 (235)
T cd00958 109 EELARVAAEAHKYGLPLI 126 (235)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 44556666777888776
No 64
>PRK02186 argininosuccinate lyase; Provisional
Probab=74.90 E-value=7.3 Score=35.33 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=47.4
Q ss_pred hHHHHHcCcEEEEee-cccccccccce-ecccCCCCCCCCCCCChHHHHHHHHHc-CCceecCCCccCCCCHHHHHHHHh
Q psy6380 12 YDSLIQAGTTIIILS-KRKLEDSSLWL-LRDQGKRMPPVAAYLNNPEIICIANNI-NVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 12 ~~~~~~~g~tvai~t-~~dl~~a~~~~-~AD~~~~~~~~~sYlni~~Ii~~A~~~-g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
+..+++.|-.|.+++ ..+ . ..+.. .+|+.. .-++.|.+.|++.+++. ++++|.++.-+. -...++.+++
T Consensus 20 ~~aa~~lG~~vi~v~~~~~-~-~~~~~~~~~~~~----~~d~~d~~~l~~~~~~~~~i~~V~~~se~~--v~~aa~lae~ 91 (887)
T PRK02186 20 LRKALLRGFTPYFLTANRG-K-YPFLDAIRVVTI----SADTSDPDRIHRFVSSLDGVAGIMSSSEYF--IEVASEVARR 91 (887)
T ss_pred HHHHHHcCCEEEEEeCCch-h-hchhhhcceeEE----EcCCCCHHHHHHHHHhcCCCCEEEeCchhh--HHHHHHHHHH
Confidence 457899994444444 433 1 12221 233221 13567899999999987 788999874321 1223345566
Q ss_pred CCCeEeCCChhhhc
Q psy6380 89 AALEFIGPTTNVLK 102 (103)
Q Consensus 89 ~gi~FIGP~~~~m~ 102 (103)
.|+. ||++++++
T Consensus 92 lglp--g~~~ea~~ 103 (887)
T PRK02186 92 LGLP--AANTEAIR 103 (887)
T ss_pred hCcC--CCCHHHHH
Confidence 6754 78877654
No 65
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=74.43 E-value=6.7 Score=32.49 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.8
Q ss_pred hHHHHHcC-cEEEEeeccc
Q psy6380 12 YDSLIQAG-TTIIILSKRK 29 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~d 29 (103)
+.+++++| +||+|....+
T Consensus 33 ~~gAkeeGf~ti~v~~~~~ 51 (358)
T PRK13278 33 LKGAKKEGFRTIAICKKKR 51 (358)
T ss_pred HHHHHHCCCeEEEEEeCCC
Confidence 57899999 9999999876
No 66
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.03 E-value=4.6 Score=31.84 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCeE---eCCCh
Q psy6380 53 NNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALEF---IGPTT 98 (103)
Q Consensus 53 ni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~F---IGP~~ 98 (103)
.+++.++.|++.|+|. |.|...+ .|..+|.+.|.++|+.+ +-|+.
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~-ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPP-EEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCH-HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4689999999999997 5577765 68889999999999765 44665
No 67
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=73.20 E-value=7.9 Score=31.19 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCCCCH--HHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLSERE--DFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLSEn~--~Fa~~~~~~gi~FIGP~~~ 99 (103)
+..+++-|-+.|+.+ |..-=||- +.. ++.+.++++||+++||+..
T Consensus 78 v~~~l~e~~~~gvk~avI~s~Gf~-~~~~~~l~~~a~~~girvlGPNc~ 125 (291)
T PRK05678 78 AADAILEAIDAGIDLIVCITEGIP-VLDMLEVKAYLERKKTRLIGPNCP 125 (291)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCEEECCCCC
Confidence 344555566677765 44444453 333 7888999999999999863
No 68
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=73.14 E-value=3.6 Score=26.84 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhh
Q psy6380 62 NNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNV 100 (103)
Q Consensus 62 ~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~ 100 (103)
+-.|-|-...|||. |+.||..++.++|+...-++..+
T Consensus 33 ~vnGfde~f~gWG~--ED~Dl~~Rl~~~g~~~~~~~~~~ 69 (78)
T PF02709_consen 33 KVNGFDERFWGWGG--EDDDLYNRLWKAGLKIVRVPGSI 69 (78)
T ss_dssp HTTSS-SS-TSCSS--HHHHHHHHHHHTT---B-SSTTT
T ss_pred HcCCCCccccccCc--cHHHHHHHHHHcCCeEEecCCce
Confidence 44678888999998 99999999999999877666544
No 69
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=72.89 E-value=4.9 Score=30.91 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=35.0
Q ss_pred CCCCh------HHHHHHHHHcCCceec-CCCccCCCCHHHHHHHHhCCCeE---eCCCh
Q psy6380 50 AYLNN------PEIICIANNINVDAIH-PGYGFLSEREDFAKAVIGAALEF---IGPTT 98 (103)
Q Consensus 50 sYlni------~~Ii~~A~~~g~daIH-PGYGFLSEn~~Fa~~~~~~gi~F---IGP~~ 98 (103)
.|+|. ++.++.+++.|++.|. |..-+ .|-.+|.+.|.++|+.. +-|..
T Consensus 83 ~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~-ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 83 GYYNPILQYGLERFLRDAKEAGVDGLIIPDLPP-EEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred EecCHHHHhCHHHHHHHHHHCCCcEEEECCCCH-HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 37785 9999999999999644 33322 35558999999998644 67764
No 70
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=72.77 E-value=5.4 Score=31.47 Aligned_cols=41 Identities=10% Similarity=-0.054 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
...+++.+++.+++++++.|.++--+++|.+.+.++|+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~ 265 (293)
T cd08572 225 LQAAVNFALAEGLLGVVLHAEDLLKNPSLISLVKALGLVLF 265 (293)
T ss_pred HHHHHHHHHHCCCeEEEechHHhhcCcHHHHHHHHcCcEEE
Confidence 45678889999999999999888789999999999999875
No 71
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=72.10 E-value=8.5 Score=30.93 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=29.8
Q ss_pred hHHHHHHHHHcCCcee-cCCCccCCCC--HHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAI-HPGYGFLSER--EDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI-HPGYGFLSEn--~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++-|.+.|+.++ .--=|| +|. .++.+.++++|++++||+.
T Consensus 76 v~~~l~e~~~~Gvk~avIis~Gf-~e~~~~~l~~~a~~~girilGPNc 122 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITEGI-PVHDMLKVKRYMEESGTRLIGPNC 122 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEECCCC
Confidence 4555666667787653 323333 333 4688888999999999986
No 72
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=69.53 E-value=9 Score=33.08 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHH---HHHHHHhCCCeEeCCChhhh
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSERED---FAKAVIGAALEFIGPTTNVL 101 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~---Fa~~~~~~gi~FIGP~~~~m 101 (103)
.|.+.|+++|++.++|.+..|- |-|- .++.++++||.-.||+.++-
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGP----E~pL~~GvvD~l~~~Gi~vFGPsk~AA 98 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGP----EAPLVAGVVDALRAAGIPVFGPTKAAA 98 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECC----cHHHhhhhHHHHHHCCCceeCcCHHHH
Confidence 7899999999999999999997 6653 46778999999999998763
No 73
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=67.52 E-value=13 Score=27.87 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
+.+.+++.+++.+++++|+-|-++ ++.|.+.+.++|+.+.-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~Gl~v~v 210 (237)
T cd08583 170 RLDEIIAFCYENGIKAVTISKNYV--NDKLIEKLNKAGIYVYV 210 (237)
T ss_pred chHHHHHHHHHcCCcEEEechhhc--CHHHHHHHHHCCCEEEE
Confidence 345677888999999999999765 68999999999998753
No 74
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=66.84 E-value=7.9 Score=30.81 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=33.3
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+++.++.|++.|+|. |.|...+ .|..+|.+.|.++||..|
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~-ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPP-EESEELREAAKKHGLDLI 144 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBG-GGHHHHHHHHHHTT-EEE
T ss_pred hHHHHHHHHHcCCCEEEEcCCCh-HHHHHHHHHHHHcCCeEE
Confidence 688999999999997 7788876 788899999999987644
No 75
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=64.99 E-value=10 Score=28.26 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=31.4
Q ss_pred HHHHHHHcCCceecCCCccC-----CCCHHHHHHHHh-CCCeEeCCC
Q psy6380 57 IICIANNINVDAIHPGYGFL-----SEREDFAKAVIG-AALEFIGPT 97 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFL-----SEn~~Fa~~~~~-~gi~FIGP~ 97 (103)
-++.|++.|+|+|-+....+ .+..++.+.+.+ .++.++.+.
T Consensus 80 ~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v 126 (221)
T PRK01130 80 EVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC 126 (221)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC
Confidence 36888889999999887764 355688888888 788877553
No 76
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=63.68 E-value=15 Score=27.69 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC----eEeCCCh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL----EFIGPTT 98 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi----~FIGP~~ 98 (103)
|...+++-.++.++|+|+-+ +.-++...|.+.+.+.|+ .|+|++.
T Consensus 177 d~~~~v~~~~~~~pd~v~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (336)
T cd06360 177 DFASYLAQIPDDVPDAVFVF-FAGGDAIKFVKQYDAAGLKAKIPLIGSGF 225 (336)
T ss_pred chHHHHHHHHhcCCCEEEEe-cccccHHHHHHHHHHcCCccCCeEEeccc
Confidence 67788899999999999854 335777889999998887 5777653
No 77
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=63.51 E-value=14 Score=29.47 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
+++|+++|++.|.-+ |...-+++.++.+.+.|++|+--..+
T Consensus 199 i~~v~~a~~~~Gk~~-----G~~~~~~~~a~~~~~~G~~~v~~g~D 239 (267)
T PRK10128 199 IETSIRRIRAAGKAA-----GFLAVDPDMAQKCLAWGANFVAVGVD 239 (267)
T ss_pred HHHHHHHHHHcCCeE-----EEcCCCHHHHHHHHHcCCcEEEEChH
Confidence 678999999999743 55678899999999999999755444
No 78
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=63.18 E-value=18 Score=26.62 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.4
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
++.|+++|++.++|.||-|-. |++++.+.+.+
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~---e~~~~~~~l~~ 93 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGD---ESPEYCAQLRA 93 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCC---CCHHHHHHHHh
Confidence 689999999999999998864 56777777755
No 79
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=62.79 E-value=20 Score=27.58 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=46.6
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCC-CCCCCCCChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhC
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM-PPVAAYLNNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGA 89 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~-~~~~sYlni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~ 89 (103)
..|.+.| +.+-|....+-+-...-++..+.+.. -..-+-++.+. .+.|.+.|++. |-||+ |++..+.|.+.
T Consensus 27 ~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~-a~~a~~aGA~FivsP~~-----~~~v~~~~~~~ 100 (204)
T TIGR01182 27 KALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQ-LRQAVDAGAQFIVSPGL-----TPELAKHAQDH 100 (204)
T ss_pred HHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHH-HHHHHHcCCCEEECCCC-----CHHHHHHHHHc
Confidence 5678888 66655543331211222333332211 12346777877 45566699997 56766 89999999999
Q ss_pred CCeEe
Q psy6380 90 ALEFI 94 (103)
Q Consensus 90 gi~FI 94 (103)
|+.++
T Consensus 101 ~i~~i 105 (204)
T TIGR01182 101 GIPII 105 (204)
T ss_pred CCcEE
Confidence 99876
No 80
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=62.35 E-value=17 Score=25.37 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCC--------HHHHHHHHhC-CCeEeC
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSER--------EDFAKAVIGA-ALEFIG 95 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn--------~~Fa~~~~~~-gi~FIG 95 (103)
++...++..++.|+|+||-+--....+ ..+.+.+++. |+..|.
T Consensus 53 ~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 53 KLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 356666777799999999998877766 3567777777 877664
No 81
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=62.12 E-value=15 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi 91 (103)
.++||+.|++.|+- +-|||.+++.+.+..|
T Consensus 34 Ae~II~~Ake~~Vp--------i~edp~Lv~~L~~lel 63 (92)
T COG2257 34 AEKIIEKAKEHGVP--------IQEDPLLVELLLKLEL 63 (92)
T ss_pred HHHHHHHHHHcCCC--------cccCHHHHHHHHhccc
Confidence 79999999999973 5799999999876543
No 82
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=61.19 E-value=12 Score=28.61 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=33.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
...++..++..+++.|++-|-++ ++++.+.+.++|+...-
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~v~~~~~~Gl~v~~ 228 (265)
T cd08564 189 PLDFLEQAKYYNATWVNFSYDFW--TEEFVKKAHENGLKVMT 228 (265)
T ss_pred cccHHHHHHhcCCceeeechhhh--hHHHHHHHHHcCCEEEE
Confidence 34567888899999999999887 57899999999997553
No 83
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=60.73 E-value=19 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
...+.++..++++||+.|.+++ +++.+.+.++|+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~~v~ 203 (229)
T cd08562 167 DWLELLAALGAVSIHLNYRGLT--EEQVKALKDAGYKLL 203 (229)
T ss_pred CHHHHHHHcCCeEEecChhhCC--HHHHHHHHHCCCEEE
Confidence 4566778889999999998874 689999999998864
No 84
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=60.60 E-value=20 Score=25.64 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.-++.|+++|+..|.+.|-.|- |+++-.+.+.+.|+.++
T Consensus 190 ~~l~~l~~~~~~~~~~via~gV----e~~~~~~~l~~~Gi~~~ 228 (241)
T smart00052 190 AIVQSIIELAQKLGLQVVAEGV----ETPEQLDLLRSLGCDYG 228 (241)
T ss_pred HHHHHHHHHHHHCCCeEEEecC----CCHHHHHHHHHcCCCEE
Confidence 3478899999999999999999 99999999999999743
No 85
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=60.27 E-value=20 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=28.0
Q ss_pred hHHHHHHHHHcCCce-ec--CCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDA-IH--PGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IH--PGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
+..+++-|-+.|+.+ |. -|+..........+.++++|+++|||+..
T Consensus 82 v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~ 130 (300)
T PLN00125 82 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCP 130 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCc
Confidence 444555566677774 33 34433322244445578899999999864
No 86
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=59.82 E-value=5.9 Score=32.44 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..-..|.-|.+.|.+.|--=-=|||++|+|+++++++|...+
T Consensus 50 ~w~~~i~~Ai~~Gl~IvsGLH~~L~ddpel~~~A~~~g~~i~ 91 (301)
T PF07755_consen 50 SWRPVILEAIEAGLDIVSGLHDFLSDDPELAAAAKKNGVRII 91 (301)
T ss_dssp CHHHHHHHHHHTT-EEEE-SSS-HCCHHHHHCCHHCCT--EE
T ss_pred HHHHHHHHHHHcCCCEEecChhhhccCHHHHHHHHHcCCeEe
Confidence 356677788889998876544599999999999999988764
No 87
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=59.61 E-value=21 Score=28.83 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHcCCcee------cCCCc-cCCCC---------------HHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAI------HPGYG-FLSER---------------EDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daI------HPGYG-FLSEn---------------~~Fa~~~~~~gi~FI 94 (103)
=+|.+.++++||++|+.-| |-|+- +=|+. .+|+++|++.||.|.
T Consensus 90 ~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G 155 (346)
T PF01120_consen 90 KFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFG 155 (346)
T ss_dssp T--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEE
T ss_pred cCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEE
Confidence 4899999999999998854 33332 12221 379999999999984
No 88
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=59.49 E-value=12 Score=33.47 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=34.2
Q ss_pred cCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 64 INVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 64 ~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
.++|.|+|-. |...||-.++..|+..||.|+|++..++.
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asa 564 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSA 564 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHH
Confidence 4689998887 77889999999999999999999988753
No 89
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=59.10 E-value=28 Score=23.72 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCCChHHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAI--HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+..+++.+++.|++.|.+.| =.. .-+.+.++|.+.+.+.||.++
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH-~~~~~~~~~~~~~~~~~i~vi 59 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDH-NNFAGYPDFYKEAKKKGIKVI 59 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEE-TTTTTHHHHHHHHHHTTSEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCC-cccccchHHHHHHHhcCCceE
Confidence 456689999999999999965 111 234456888899888888754
No 90
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=58.61 E-value=16 Score=29.98 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=38.1
Q ss_pred HHHHcC-cEEEEeecccccccccc-eec----ccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 14 SLIQAG-TTIIILSKRKLEDSSLW-LLR----DQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 14 ~~~~~g-~tvai~t~~dl~~a~~~-~~A----D~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
.|++.| +.+.|+|+.-+....++ ++. +.+ ....+..++-+++++++.+++.++|.|.
T Consensus 25 ~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Ii 93 (383)
T PRK09860 25 MMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVI 93 (383)
T ss_pred HHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEE
Confidence 356778 89999998754322221 111 111 1224566889999999999999999976
No 91
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=58.02 E-value=28 Score=28.99 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHcCCcee------cCCCc-cCCCC---------------HHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAI------HPGYG-FLSER---------------EDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daI------HPGYG-FLSEn---------------~~Fa~~~~~~gi~FI 94 (103)
-.|.+.++++||++|+..| |-|+- +=|.. .+|+++|+++||.|-
T Consensus 80 ~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G 145 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFG 145 (384)
T ss_pred hCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEE
Confidence 4899999999999999865 44443 22221 378999999999983
No 92
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=57.41 E-value=13 Score=27.78 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=27.4
Q ss_pred ccCCCC--CCCCCCCChHHHHHHHHHcCCce--ecCCCc
Q psy6380 40 DQGKRM--PPVAAYLNNPEIICIANNINVDA--IHPGYG 74 (103)
Q Consensus 40 D~~~~~--~~~~sYlni~~Ii~~A~~~g~da--IHPGYG 74 (103)
||+... .+....-|++.+++.+.+.|+++ |+|||-
T Consensus 7 Dh~~~~~~~p~~~~~d~~~~~~~~~~~g~~av~v~~~~~ 45 (235)
T cd00958 7 DHGIEHGFGPNPGLEDPEETVKLAAEGGADAVALTKGIA 45 (235)
T ss_pred CCcccccCCCCccccCHHHHHHHHHhcCCCEEEeChHHH
Confidence 776554 55668889999999999999998 466653
No 93
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=57.37 E-value=20 Score=28.52 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe--EeCCC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE--FIGPT 97 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~--FIGP~ 97 (103)
-|...++.-.+..++|+|+- .|+-.+-..|.+++.+.|+. |+|+.
T Consensus 203 ~D~~~~v~~l~~~~~d~v~~-~~~~~~~~~~~k~~~~~G~~~~~i~~~ 249 (369)
T PRK15404 203 KDFSALIAKLKKENVDFVYY-GGYHPEMGQILRQAREAGLKTQFMGPE 249 (369)
T ss_pred CchHHHHHHHHhcCCCEEEE-CCCchHHHHHHHHHHHCCCCCeEEecC
Confidence 56788888889999999873 34555667888888888865 88885
No 94
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=56.87 E-value=33 Score=26.92 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=50.3
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCC-CCCCCCCCCChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhC
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGK-RMPPVAAYLNNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGA 89 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~-~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~ 89 (103)
++|++-| +++=|.--.+-+...--.++++.+ .+-..-.-||.+..-+++ +.|+|. |-||. |++..+.|.+.
T Consensus 32 ~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~-~aGa~fiVsP~~-----~~ev~~~a~~~ 105 (211)
T COG0800 32 KALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAI-AAGAQFIVSPGL-----NPEVAKAANRY 105 (211)
T ss_pred HHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHH-HcCCCEEECCCC-----CHHHHHHHHhC
Confidence 5677778 655554433323333334455543 223456789998876655 489996 66876 89999999999
Q ss_pred CCeEe
Q psy6380 90 ALEFI 94 (103)
Q Consensus 90 gi~FI 94 (103)
||.++
T Consensus 106 ~ip~~ 110 (211)
T COG0800 106 GIPYI 110 (211)
T ss_pred CCccc
Confidence 98775
No 95
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=56.68 E-value=23 Score=27.09 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=27.5
Q ss_pred HHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 60 IANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 60 ~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..++.+++.+||.|.+++ +++.+.+.++|+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~~v~ 227 (252)
T cd08574 195 SLRENGISRLNLEYSQLS--AQEIREYSKANISVN 227 (252)
T ss_pred HHHhcCCeEEccCcccCC--HHHHHHHHHCCCEEE
Confidence 345689999999999985 689999999998764
No 96
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=55.42 E-value=26 Score=27.42 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCcee-cCCCcc-CCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 56 EIICIANNINVDAI-HPGYGF-LSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 56 ~Ii~~A~~~g~daI-HPGYGF-LSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
.|+.+|+++|+.+| .|+|.- ..=...|.+.|++.|+.++-|.+
T Consensus 67 ~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~ 111 (217)
T PF02593_consen 67 ELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKP 111 (217)
T ss_pred HHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCcc
Confidence 45666677999986 666621 22334689999999999999875
No 97
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=55.03 E-value=31 Score=24.62 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHcCCceecC--C----Cc-----------cCCCCH--HHHHHHHhCCCeEeC
Q psy6380 53 NNPEIICIANNINVDAIHP--G----YG-----------FLSERE--DFAKAVIGAALEFIG 95 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHP--G----YG-----------FLSEn~--~Fa~~~~~~gi~FIG 95 (103)
|.+..++..|+.++|+|-- + |- +|..|. ++.++|.++||+.+.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEE
Confidence 4567777778888776422 1 11 134443 677888899998875
No 98
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=54.81 E-value=17 Score=28.83 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=35.1
Q ss_pred CCCCC-----hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLN-----NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYln-----i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+|.| +.+..+..++.||++|+--=| .|..+..+++.++||-+.
T Consensus 83 g~y~~~~~~av~~a~r~~~~aGa~aVkiEd~--~~~~~~I~al~~agipV~ 131 (254)
T cd06557 83 GSYQTSPEQALRNAARLMKEAGADAVKLEGG--AEVAETIRALVDAGIPVM 131 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHHHcCCCee
Confidence 67999 777788888899999997555 377778888889998544
No 99
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.74 E-value=30 Score=25.80 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=31.0
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
.++.+..++.+++.|.+.|=-.+-+-..-.++.+.+++.||...+
T Consensus 13 ~~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 13 ELPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 357888999999999887643222223345577888899987663
No 100
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=54.72 E-value=73 Score=25.11 Aligned_cols=46 Identities=7% Similarity=0.054 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHHHHcCCc--ee-cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVD--AI-HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~d--aI-HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.-..|.+.+.+++++.+.. .+ +|.||...+-.++++.|.++|+.+|
T Consensus 145 ~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li 193 (402)
T cd00378 145 TGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLL 193 (402)
T ss_pred cCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEE
Confidence 3467888888877543333 32 6778877788888888888876553
No 101
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=54.65 E-value=21 Score=28.84 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=29.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
+++-++-|++.|+|.+..==--+-|..+|.+.|+++||.+
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 4778889999999975433333456667999999998754
No 102
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=53.67 E-value=26 Score=27.35 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=31.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+++++.+|++.|..+ |...-+++.++...+.|++|+-=..
T Consensus 192 ~~~v~~aa~a~G~~~-----g~~~~~~~~~~~~~~~G~~~~~~~~ 231 (249)
T TIGR03239 192 IRHIFDRAAAHGKPC-----GILAPVEADARRYLEWGATFVAVGS 231 (249)
T ss_pred HHHHHHHHHHcCCCE-----EEcCCCHHHHHHHHHcCCCEEEEhH
Confidence 677888999999764 4556788888999999999875443
No 103
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=53.52 E-value=13 Score=29.78 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=32.7
Q ss_pred cCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 64 INVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 64 ~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
.++|.+.++. |...|+-..+..++..||.++|++..+++
T Consensus 87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~ 126 (347)
T PRK14572 87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASA 126 (347)
T ss_pred cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHH
Confidence 4678777765 67889999999999999999999987653
No 104
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=53.47 E-value=30 Score=26.24 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
....+++.++.++|+.|.++ ++.+.+.+.++|+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~~v~ 213 (249)
T PRK09454 178 WLELTRRLGCVSLHLNHKLL--DEARVAALKAAGLRIL 213 (249)
T ss_pred HHHHHHhcCCeEEecccccC--CHHHHHHHHHCCCEEE
Confidence 34556778999999999887 6899999999998754
No 105
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=52.70 E-value=37 Score=30.14 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=52.6
Q ss_pred chHHHHHcCcEEEEe------ec--------ccc--cccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCc
Q psy6380 11 NYDSLIQAGTTIIIL------SK--------RKL--EDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 11 ~~~~~~~~g~tvai~------t~--------~dl--~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
-...|+|+|-+|+|= |. .|. -|-+|+. ..+ ..+.+-+=.++||+.||..|-..|-.|.
T Consensus 406 iI~r~ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvd----tlg-~~~a~~~I~~hII~MAk~L~L~iVaEGV- 479 (524)
T COG4943 406 IILRLREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVD----TLG-TDSASHLIAPHIIEMAKSLGLKIVAEGV- 479 (524)
T ss_pred HHHHHHhcCCeEEEccCcCcchhHHHHhhCCccceeccHHHHH----hhc-cCcccchhHHHHHHHHHHcCCcEEeecc-
Confidence 356899999998882 11 111 1222222 112 2334556789999999999999999998
Q ss_pred cCCCCHHHHHHHHhCCCeEe
Q psy6380 75 FLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 75 FLSEn~~Fa~~~~~~gi~FI 94 (103)
|-.+=+.+++++|+.+-
T Consensus 480 ---EteeQ~~~LR~~Gv~~g 496 (524)
T COG4943 480 ---ETEEQVDWLRKRGVHYG 496 (524)
T ss_pred ---cHHHHHHHHHHcCCccc
Confidence 88988899999998763
No 106
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=52.66 E-value=9.6 Score=29.59 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=17.2
Q ss_pred CHHHHHHHHhCCCeEeCCCh
Q psy6380 79 REDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 79 n~~Fa~~~~~~gi~FIGP~~ 98 (103)
....++.+.+.|.+|+||..
T Consensus 143 S~~mskaLKkrGf~fvGpTt 162 (188)
T COG2818 143 SDAMSKALKKRGFKFVGPTT 162 (188)
T ss_pred HHHHHHHHHHccCeecCcHH
Confidence 44688899999999999975
No 107
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=52.52 E-value=30 Score=28.28 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.1
Q ss_pred cchHHHHHcCcEEEEeeccc
Q psy6380 10 DNYDSLIQAGTTIIILSKRK 29 (103)
Q Consensus 10 ~~~~~~~~~g~tvai~t~~d 29 (103)
.+...+.+.|++||++||.-
T Consensus 68 ~~li~~l~~g~~valVSDAG 87 (275)
T COG0313 68 PKLIPLLKKGKSVALVSDAG 87 (275)
T ss_pred HHHHHHHhcCCeEEEEecCC
Confidence 34567788999999999965
No 108
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=52.43 E-value=52 Score=24.17 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=36.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFL 76 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFL 76 (103)
+..|++.| +||+|.-..- .+..+.. ++-.+..-...+.--++.++++|.+.|.. |+.|.+|-
T Consensus 26 ~~~m~~~GidtlIlq~~~~-~~~~~yp-s~~~~~~~~~~~~d~l~~~L~~A~~~Gmk-v~~Gl~~~ 88 (166)
T PF14488_consen 26 FRAMKAIGIDTLILQWTGY-GGFAFYP-SKLSPGGFYMPPVDLLEMILDAADKYGMK-VFVGLYFD 88 (166)
T ss_pred HHHHHHcCCcEEEEEEeec-CCcccCC-ccccCccccCCcccHHHHHHHHHHHcCCE-EEEeCCCC
Confidence 46799999 9998874433 2222211 11100001113445689999999999984 66777764
No 109
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.29 E-value=21 Score=30.18 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=44.9
Q ss_pred cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 20 TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 20 ~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+.-++.-|.+-.++..-.+.|.-.-+.....|++. .|+++|.++|++.|==-|.--.. .++.+.++++|++.|
T Consensus 48 ~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v 120 (389)
T COG1748 48 KVEALQVDAADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAV 120 (389)
T ss_pred cceeEEecccChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEE
Confidence 44455555442233333444442211233446666 99999999999987665554445 678888899998875
No 110
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=52.21 E-value=27 Score=24.10 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
+.|++..++.|++.|+==.| +.+..|.+.+.+.++++|....|
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg--~~~~~l~~~~~~~~~~~i~~~~E 43 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPG--GAILPLLDALARSGIRYILVRHE 43 (155)
T ss_pred CHHHHHHHHcCCCEEEECCC--CchHHHHHHhccCCCEEEEeCCH
Confidence 46889999999998764333 67888888888888999877655
No 111
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=51.62 E-value=25 Score=28.39 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=34.6
Q ss_pred CCCC-CChHHHHHHH----HHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 48 VAAY-LNNPEIICIA----NNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 48 ~~sY-lni~~Ii~~A----~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
-.|| .+.+.-++-| ++.|||+|..-=|. |.++..+++.++||-.+|
T Consensus 86 f~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~--~~~~~i~~l~~~GIPV~g 136 (261)
T PF02548_consen 86 FGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA--EIAETIKALVDAGIPVMG 136 (261)
T ss_dssp TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG--GGHHHHHHHHHTT--EEE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEeccch--hHHHHHHHHHHCCCcEEE
Confidence 4578 7888777665 56899999877666 899999999999998765
No 112
>PRK09989 hypothetical protein; Provisional
Probab=51.15 E-value=28 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.1
Q ss_pred hHHHHHHHHHcCCceec--CCC
Q psy6380 54 NPEIICIANNINVDAIH--PGY 73 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH--PGY 73 (103)
+++.|++|++.||..|+ ||+
T Consensus 87 l~~~i~~A~~lg~~~v~v~~g~ 108 (258)
T PRK09989 87 IDLALEYALALNCEQVHVMAGV 108 (258)
T ss_pred HHHHHHHHHHhCcCEEEECccC
Confidence 68899999999999865 776
No 113
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=50.78 E-value=32 Score=26.50 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=38.3
Q ss_pred CCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 47 PVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 47 ~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..+..=+..|+..|++.|+..|-.|- |+++=.+.+.+.|+.++
T Consensus 188 ~~~~~~iv~~iv~la~~l~~~vvaEGV----Et~~ql~~L~~~G~~~~ 231 (256)
T COG2200 188 DARDQAIVRAIVALAHKLGLTVVAEGV----ETEEQLDLLRELGCDYL 231 (256)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEeec----CCHHHHHHHHHcCCCeE
Confidence 344456689999999999999999999 99999999999998854
No 114
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=50.61 E-value=35 Score=24.37 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.-++.|+..|+..|+..|-.|- |+.+-.+.+++.|+.++
T Consensus 189 ~~l~~l~~~~~~~~~~via~gV----e~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 189 AIVRAIIALAHSLGLKVVAEGV----ETEEQLELLRELGCDYV 227 (240)
T ss_pred HHHHHHHHHHHHCCCeEEEEec----CCHHHHHHHHHcCCCee
Confidence 3467799999999999999999 99999999999999653
No 115
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=50.43 E-value=27 Score=28.31 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHcCcEEEEeecccc-cccccce-ec----ccC------CCCCCCCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 15 LIQAGTTIIILSKRKL-EDSSLWL-LR----DQG------KRMPPVAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 15 ~~~~g~tvai~t~~dl-~~a~~~~-~A----D~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
|++.|+.|.|+|+... ....++. +. ..+ ....+..++-+++++++.+++.++|+|. -|=|
T Consensus 21 ~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGG 93 (380)
T cd08185 21 ALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGG 93 (380)
T ss_pred HHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3455788889998764 2222211 11 111 1224566788999999999999999876 4433
No 116
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=50.22 E-value=27 Score=28.13 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=36.4
Q ss_pred HHHcCcEEEEeecccc-cccccce-----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAGTTIIILSKRKL-EDSSLWL-----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g~tvai~t~~dl-~~a~~~~-----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.|+.+.|+|++.+ .....+. +...+ ....+..++-+++++++.+++.++|.|.
T Consensus 21 ~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 88 (357)
T cd08181 21 LAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVI 88 (357)
T ss_pred HHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 3556888888988764 2222111 11111 1234566888999999999999999864
No 117
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=50.05 E-value=33 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=31.8
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
+.+++.+|++.|..+ |...-+++-++...+.|+.|+--..+
T Consensus 199 ~~~v~~aa~~~G~~~-----g~~~~~~~~~~~~~~~G~~~v~~~~D 239 (256)
T PRK10558 199 IQHIFARAKAHGKPS-----GILAPVEADARRYLEWGATFVAVGSD 239 (256)
T ss_pred HHHHHHHHHHcCCce-----EEcCCCHHHHHHHHHcCCCEEEEchH
Confidence 567888899999754 45677888888889999999765544
No 118
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=49.76 E-value=35 Score=24.51 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
+.+..++.+++.|+|.|+-..+.-.+...+.+.+.+.|+.
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~ 106 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAK 106 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCc
Confidence 5678888899999998433333323334555666666654
No 119
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=49.18 E-value=27 Score=28.57 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=36.0
Q ss_pred cEEEEeecccccccccce-----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 20 TTIIILSKRKLEDSSLWL-----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 20 ~tvai~t~~dl~~a~~~~-----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
+.+.|+|++.+.+..+.. +.+.+ ....+..++-+++++++.+++.++|+|. -|=|
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 88 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGG 88 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 778888887654332321 11111 1335567888999999999999999876 4443
No 120
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.90 E-value=54 Score=25.16 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=48.3
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCC-CCCCCCCChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhC
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM-PPVAAYLNNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGA 89 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~-~~~~sYlni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~ 89 (103)
..|.+.| +.+-|.-...-+-...-++..+.+.. -..-+-+|.+.. +.|.+.|++. |=|++ |++..+.|.+.
T Consensus 23 ~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a-~~ai~aGA~FivSP~~-----~~~vi~~a~~~ 96 (201)
T PRK06015 23 RALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQF-EDAAKAGSRFIVSPGT-----TQELLAAANDS 96 (201)
T ss_pred HHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHH-HHHHHcCCCEEECCCC-----CHHHHHHHHHc
Confidence 5788888 76666544331111122222222211 224567888876 6677799996 66876 78999999999
Q ss_pred CCeEe
Q psy6380 90 ALEFI 94 (103)
Q Consensus 90 gi~FI 94 (103)
|+.++
T Consensus 97 ~i~~i 101 (201)
T PRK06015 97 DVPLL 101 (201)
T ss_pred CCCEe
Confidence 99876
No 121
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=48.88 E-value=28 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..|+++|++.|++.|-.|- |+++-.+.+.+.|+.++
T Consensus 192 l~~l~~~~~~~~~~via~gV----e~~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 192 LQSLINLAKSLGIKVIAEGV----ESEEQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHHHHTT-EEEEECE-----SHHHHHHHHHTTESEE
T ss_pred HHHHHHHhhccccccceeec----CCHHHHHHHHHcCCCEE
Confidence 56788999999999999999 99999999999999864
No 122
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=48.11 E-value=31 Score=28.55 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=29.0
Q ss_pred HHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 58 ICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..+++.|++.+||.|.+++ +++.+.+.++|+.+.
T Consensus 193 ~~~~~~~~~~~l~~~~~~lt--~~~v~~~~~~Gl~V~ 227 (351)
T cd08608 193 VASLRERGITRLNLRYTQAS--AQEIRDYSASNLSVN 227 (351)
T ss_pred HHHHHHcCCeEEccchhhcC--HHHHHHHHHCCCEEE
Confidence 45566789999999999985 689999999998753
No 123
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=47.77 E-value=38 Score=25.90 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC----eEeCCC
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL----EFIGPT 97 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi----~FIGP~ 97 (103)
|...++.-.++.++|+|.-. +.-.+.+.|.+.+.+.|+ .++|+.
T Consensus 174 d~~~~i~~l~~~~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 221 (333)
T cd06359 174 DFSAELAQIRAAKPDAVFVF-LPGGMGVNFVKQYRQAGLKKDIPLYSPG 221 (333)
T ss_pred chHHHHHHHHhCCCCEEEEE-ccCccHHHHHHHHHHcCcccCCeeeccC
Confidence 66778888899999998852 222456789999999988 578764
No 124
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=47.05 E-value=1.1e+02 Score=22.59 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=10.6
Q ss_pred HHcCcEEEEeeccc
Q psy6380 16 IQAGTTIIILSKRK 29 (103)
Q Consensus 16 ~~~g~tvai~t~~d 29 (103)
.++|+.|++++-.|
T Consensus 68 ~~~g~~V~~L~~GD 81 (229)
T TIGR01465 68 HREGKLVVRLHTGD 81 (229)
T ss_pred HHCCCeEEEEeCcC
Confidence 45688888888776
No 125
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=46.95 E-value=37 Score=29.02 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe-----EeCCChhh
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE-----FIGPTTNV 100 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~-----FIGP~~~~ 100 (103)
...=+..|+.+|++.|++.|-.|- |+++-.+.+++.|+. |+|+|...
T Consensus 733 ~~~~~~~~~~~~~~~~i~via~gV----e~~~~~~~l~~~g~~~~QG~~~~~p~~~ 784 (799)
T PRK11359 733 ILALLEAITSIGQSLNLTVVAEGV----ETKEQFEMLRKIHCRVIQGYFFSRPLPA 784 (799)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEcC----CCHHHHHHHHhcCCCEEeeCeecCCCCH
Confidence 344478899999999999999999 999999999999997 45555443
No 126
>PTZ00445 p36-lilke protein; Provisional
Probab=46.64 E-value=65 Score=25.53 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHH-cCCce
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANN-INVDA 68 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~-~g~da 68 (103)
..|++.|=.|+|+|--| ..++. . .....|...+++++++.+ ++|++
T Consensus 85 ~~l~~~~I~v~VVTfSd---~~~~~------~-~~~~~~Isg~~li~~~lk~s~~~~ 131 (219)
T PTZ00445 85 KRLKNSNIKISVVTFSD---KELIP------S-ENRPRYISGDRMVEAALKKSKCDF 131 (219)
T ss_pred HHHHHCCCeEEEEEccc---hhhcc------c-cCCcceechHHHHHHHHHhcCccc
Confidence 46788998899998865 23321 1 456789999999999977 88887
No 127
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=46.44 E-value=42 Score=24.88 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
...+.+++.++++|+|.|.++ ++++.+.+.++|+...
T Consensus 168 ~~~~~~~~~~~~~v~~~~~~~--~~~~i~~~~~~g~~v~ 204 (230)
T cd08563 168 DPKDYAKKIGADSLHPDFKLL--TEEVVEELKKRGIPVR 204 (230)
T ss_pred CHHHHHHHhCCEEEccCchhc--CHHHHHHHHHCCCEEE
Confidence 356777888999999999775 5789999999998765
No 128
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=46.40 E-value=21 Score=29.39 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=52.1
Q ss_pred CCCccCCcchHHHHHcC-cEEEEeecccccccccceecccCCC-----CCCCCCCCChHHHHHHHHHcCCceecC
Q psy6380 3 FPTYPCKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKR-----MPPVAAYLNNPEIICIANNINVDAIHP 71 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~-----~~~~~sYlni~~Ii~~A~~~g~daIHP 71 (103)
|-.-|||..-+|.-=+- +-|||--++-++++.|..-+..++. ++-..|--.+..+|+.|+..|.+||.-
T Consensus 189 FLEEPCkt~aeSr~Fa~eTgIAIAWDEs~readF~~e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 189 FLEEPCKTRAESRAFARETGIAIAWDESLREADFAFEAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred HHhcccCChHHHHHHHHhcCeeEeecchhcccccccccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEee
Confidence 33459999988876665 7899999998888888776655432 122456677889999999999999863
No 129
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=46.23 E-value=41 Score=23.32 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.5
Q ss_pred HHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 59 CIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 59 ~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+++..+++.+++.|.+ .++.+.+.+.++|+.+.
T Consensus 131 ~~~~~~~~~~v~~~~~~--~~~~~i~~~~~~g~~v~ 164 (189)
T cd08556 131 ELARALGADAVNPHYKL--LTPELVRAAHAAGLKVY 164 (189)
T ss_pred hHHHhcCCeEEccChhh--CCHHHHHHHHHcCCEEE
Confidence 46788999999998876 56899999999998764
No 130
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=46.22 E-value=39 Score=25.06 Aligned_cols=37 Identities=5% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHcCCceecCCCccCC-----CCHHHHHHHHhCCCeEe
Q psy6380 58 ICIANNINVDAIHPGYGFLS-----EREDFAKAVIGAALEFI 94 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFLS-----En~~Fa~~~~~~gi~FI 94 (103)
.+.+++.+++++|+.+.+++ -.++|.+.+.++|+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~ 198 (226)
T cd08568 157 PELHEKLKLYSLHVPIDAIGYIGFEKFVELLRLLRKLGLKIV 198 (226)
T ss_pred HHHHHhcCCcEeccchhhhccccccccHHHHHHHHHCCCEEE
Confidence 45667789999999877664 24889999999998754
No 131
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=45.89 E-value=48 Score=23.68 Aligned_cols=40 Identities=10% Similarity=-0.034 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
|....++.+.+.|+|.|+-..+--.+..++.+.+.+.|+.
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~ 107 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMK 107 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCe
Confidence 5566788888999999533333224556677777777765
No 132
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.88 E-value=31 Score=26.37 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHcCCceecCC---CccCCCCHHHHHHHHhCCCe---EeCCC
Q psy6380 52 LNNPEIICIANNINVDAIHPG---YGFLSEREDFAKAVIGAALE---FIGPT 97 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPG---YGFLSEn~~Fa~~~~~~gi~---FIGP~ 97 (103)
.+.+..++.+++.|+|+|.-. +=...|-.++.+.|.++|+. ++-|.
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 378889999999999986644 21133455788888888875 44553
No 133
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=45.83 E-value=74 Score=26.85 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
+.+.-..+.-|.+.|.+.|-=.--|||.+|+|.+..++.|...
T Consensus 83 ~~~~~~~i~eAl~~G~nVvsglh~~ls~dp~~~k~A~~~G~rl 125 (339)
T COG3367 83 PESWREYIVEALEAGMNVVSGLHSFLSDDPEFVKLAERTGVRL 125 (339)
T ss_pred cHHHHHHHHHHHHhCchhhhhhHHHhhcChHHHHHHHHcCCee
Confidence 4445455667788999998877789999999999999999854
No 134
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=45.64 E-value=25 Score=28.65 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHcCCc---eecCCCcc-CCCCHHHHHHHHh
Q psy6380 52 LNNPEIICIANNINVD---AIHPGYGF-LSEREDFAKAVIG 88 (103)
Q Consensus 52 lni~~Ii~~A~~~g~d---aIHPGYGF-LSEn~~Fa~~~~~ 88 (103)
-.+..+++.|++.|++ +||||.-+ .|=+.++...+.|
T Consensus 56 ~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K 96 (306)
T PF07555_consen 56 AELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAK 96 (306)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHH
Confidence 3478899999999998 69999986 4544566555443
No 135
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=45.13 E-value=35 Score=27.61 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=35.9
Q ss_pred chHHHHHcC-cEEEEeecccc-cccccce-----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 11 NYDSLIQAG-TTIIILSKRKL-EDSSLWL-----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 11 ~~~~~~~~g-~tvai~t~~dl-~~a~~~~-----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
-...|.+.+ +.+.|+|++.. +...+.. +.+.+ ....+..++-+++++++.+++.++|+|.
T Consensus 14 ~l~~l~~~~~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 86 (375)
T cd08179 14 SLEYLKTLKGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWII 86 (375)
T ss_pred HHHHHHHhcCCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 344555555 77778887542 2222111 11111 1224556788899999999999999865
No 136
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=44.88 E-value=34 Score=27.49 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=34.4
Q ss_pred HHHcC-cEEEEeeccccc-ccccc-eeccc------CCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLE-DSSLW-LLRDQ------GKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~-~a~~~-~~AD~------~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+..+. ..... .+.+. .....+..++-+++++++.+++.++|+|.
T Consensus 18 ~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 82 (367)
T cd08182 18 LKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVL 82 (367)
T ss_pred HHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEE
Confidence 45567 778888886532 00010 01111 11224456788899999999999999875
No 137
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=44.69 E-value=46 Score=25.24 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=31.6
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
+.++.+++ +.|++.|+|.||-+. .+++..+.|...|+.
T Consensus 69 TV~~~~~~-~~a~~aGA~fivsp~----~~~~v~~~~~~~~~~ 106 (206)
T PRK09140 69 TVLSPEQV-DRLADAGGRLIVTPN----TDPEVIRRAVALGMV 106 (206)
T ss_pred ecCCHHHH-HHHHHcCCCEEECCC----CCHHHHHHHHHCCCc
Confidence 47777766 788889999999876 788999999888875
No 138
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=43.67 E-value=65 Score=25.90 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCce
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDA 68 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~da 68 (103)
..+.++|++||++||.= .|.++.+ ...|++.|++.|...
T Consensus 66 ~~~l~~g~~valvSDAG------------~P~ISDP-----G~~LV~~~~~~~i~v 104 (276)
T TIGR00096 66 AAKLEIGNNIAVSSDAG------------PPLISDP-----GHLLVACREKANIIV 104 (276)
T ss_pred HHHHHcCCcEEEEecCC------------CCCcCCc-----cHHHHHHHHHCCCeE
Confidence 45677899999999965 2222222 346778888877654
No 139
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=43.45 E-value=61 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=16.8
Q ss_pred hHHHHHHHHHcCCceecCCCcc
Q psy6380 54 NPEIICIANNINVDAIHPGYGF 75 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGF 75 (103)
+++.|++|++.||..|.-.+|.
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~ 108 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK 108 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC
Confidence 6889999999999976433443
No 140
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=42.82 E-value=41 Score=27.23 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.4
Q ss_pred HHHHHcCcEEEEeeccc
Q psy6380 13 DSLIQAGTTIIILSKRK 29 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~d 29 (103)
..|-++|++||++|-.|
T Consensus 66 ielA~~G~~ValVSsGD 82 (249)
T COG1010 66 IELAAEGRDVALVSSGD 82 (249)
T ss_pred HHHHhcCCeEEEEeCCC
Confidence 46778899999999988
No 141
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=42.65 E-value=32 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
....+.+.+.++....|||+|.-|-++++ ||++.+...+
T Consensus 190 Ggi~~~~d~~~~l~~~gad~V~igr~~l~-~P~~~~~~~~ 228 (231)
T cd02801 190 GDIFSLEDALRCLEQTGVDGVMIGRGALG-NPWLFREIKE 228 (231)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcHHhHh-CCHHHHhhhh
Confidence 45666777777777779999999999998 6777777654
No 142
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=42.39 E-value=8.8 Score=25.04 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCcchHHHHHc-C-cEEEEeecccccccccceec-ccCCC----CCCCCCCCChHHHHHHHHHcCCc
Q psy6380 8 CKDNYDSLIQA-G-TTIIILSKRKLEDSSLWLLR-DQGKR----MPPVAAYLNNPEIICIANNINVD 67 (103)
Q Consensus 8 ~~~~~~~~~~~-g-~tvai~t~~dl~~a~~~~~A-D~~~~----~~~~~sYlni~~Ii~~A~~~g~d 67 (103)
+-+++..|.+. . ..|.|.|+... -..+++.+ +.+.. -|-..+.-+..+|+++|++.|+.
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred chhHHHHHHHhhcCCEEEEecCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 44567777763 4 77888887662 22222211 22321 14456788889999999999876
No 143
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=42.09 E-value=45 Score=27.09 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=35.1
Q ss_pred HHHcCcEEEEeecccc-cccccce-----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAGTTIIILSKRKL-EDSSLWL-----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g~tvai~t~~dl-~~a~~~~-----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.|+.+.|+|+... +...++. +.+++ ....+..++-+++.+++.+++.++|+|.
T Consensus 24 ~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 91 (382)
T cd08187 24 LKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFIL 91 (382)
T ss_pred HHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4455778888887532 2222111 11211 1224556788999999999999999876
No 144
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=41.83 E-value=1.2e+02 Score=22.63 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=29.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCH------------HHHHHHHhCCCeEeCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSERE------------DFAKAVIGAALEFIGPT 97 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~------------~Fa~~~~~~gi~FIGP~ 97 (103)
.++|.++-...+... -==|-|.+|.. .--+.++++||.++||.
T Consensus 83 l~~I~~vl~d~diNl-dYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~~~~ 137 (142)
T COG4747 83 LSRIAEVLGDADINL-DYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLIGMK 137 (142)
T ss_pred HHHHHHHHhhcCcCc-eeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeecChH
Confidence 677888777665432 11367877752 23467799999999985
No 145
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=41.48 E-value=1.2e+02 Score=22.85 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
+.+.|++++++.+.|.|.-. | .|+++|.+.+.+
T Consensus 65 ~~~~i~~~~~~~~~d~vQLH-g--~e~~~~~~~l~~ 97 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLH-G--DETPEFCRQLKR 97 (210)
T ss_pred CHHHHHHHHHhcCCCEEEEC-C--CCCHHHHHHHHh
Confidence 57899999999999998764 3 588888888865
No 146
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=41.35 E-value=88 Score=25.19 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCChHHHHHHHHHcCCcee--cC--CCccCCCCHHHHHHHHhCCCeEeCCC
Q psy6380 49 AAYLNNPEIICIANNINVDAI--HP--GYGFLSEREDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daI--HP--GYGFLSEn~~Fa~~~~~~gi~FIGP~ 97 (103)
..-..++.-|+..+.+|+++| +| |.-.|.|--..+++|.++|+. +=|.
T Consensus 132 ~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~-lEPT 183 (236)
T TIGR03581 132 EAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY-LEPT 183 (236)
T ss_pred CceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc-cCCC
Confidence 356899999999999999996 33 666899999999999999985 4554
No 147
>PF15472 DUF4638: Domain of unknown function (DUF4638)
Probab=41.16 E-value=16 Score=29.67 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=35.4
Q ss_pred hHHHHHcC-----cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCce-ecCCC
Q psy6380 12 YDSLIQAG-----TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDA-IHPGY 73 (103)
Q Consensus 12 ~~~~~~~g-----~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGY 73 (103)
..||.|.| +++-++-++++-+-.|.++ |--||..++.+|++.|.+. |||+-
T Consensus 194 lksLmEKg~epK~e~~kmlKP~e~l~crylrl-----------~~nNi~Tl~~lCkdaG~~vdiHpHm 250 (268)
T PF15472_consen 194 LKSLMEKGTEPKMETVKMLKPEEVLSCRYLRL-----------SKNNIRTLLKLCKDAGMDVDIHPHM 250 (268)
T ss_pred HHHHHHcCCCccHHHHhccCHHHhhccceeee-----------chhhHHHHHHHHHHcCCCcccCccc
Confidence 35788888 4555666665433334332 2347999999999999986 99986
No 148
>PF10119 MethyTransf_Reg: Predicted methyltransferase regulatory domain; InterPro: IPR018773 This entry represents a sequence region found in various prokaryotic methyltransferases that regulates the activity of the methyltransferase domain.
Probab=41.06 E-value=22 Score=23.44 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCeEeCCC
Q psy6380 80 EDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 80 ~~Fa~~~~~~gi~FIGP~ 97 (103)
.+|++.++++|+.|+|..
T Consensus 22 ~df~~~~~~~~L~y~g~a 39 (86)
T PF10119_consen 22 ADFAAELAAAGLQYLGDA 39 (86)
T ss_pred HHHHHHHHHcCCcEEEcC
Confidence 579999999999999975
No 149
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=41.05 E-value=43 Score=31.04 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+...++.+++.|++.|.++|-= =.|-+..-.+|.+.|.++||..|
T Consensus 16 dg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I 62 (874)
T PRK09532 16 DGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPI 62 (874)
T ss_pred hccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEE
Confidence 45678999999999999988710 11123334689999999999765
No 150
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.98 E-value=45 Score=27.01 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=39.6
Q ss_pred HHHcC-cEEEEeecccccccccc-e----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLW-L----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~-~----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
|++.| +.+.|+|+..+.+...+ + +.+.+ ....+..++-+++++++.+++.++|+|. -|=|
T Consensus 21 l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 93 (374)
T cd08189 21 ISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGG 93 (374)
T ss_pred HHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 46678 89999998865433221 1 11111 1234567788899999999999999876 4443
No 151
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=40.54 E-value=34 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=21.3
Q ss_pred HHHHHHHcCCceec-CCCccCCCC--HHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINVDAIH-PGYGFLSER--EDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daIH-PGYGFLSEn--~~Fa~~~~~~gi~FI 94 (103)
.++.|.+.|+|.|| +|. -++. .++.+.+.+.|+.++
T Consensus 73 ~v~~a~~aGAdgV~v~g~--~~~~~~~~~i~~a~~~G~~~~ 111 (430)
T PRK07028 73 EVEMAAKAGADIVCILGL--ADDSTIEDAVRAARKYGVRLM 111 (430)
T ss_pred HHHHHHHcCCCEEEEecC--CChHHHHHHHHHHHHcCCEEE
Confidence 66777778888777 543 2221 245566666665543
No 152
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=40.43 E-value=62 Score=21.54 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.4
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
.++|+++|++.|+-.+ ||+.+++.+..
T Consensus 29 A~~I~~~A~e~~VPi~--------~~~~LAr~L~~ 55 (82)
T TIGR00789 29 AERIIEIAKKHGIPIV--------EDPDLVDVLLK 55 (82)
T ss_pred HHHHHHHHHHcCCCEE--------eCHHHHHHHHh
Confidence 7899999999998543 99999999974
No 153
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=40.39 E-value=18 Score=28.43 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=25.1
Q ss_pred HHHHHHHcCCcee-----------cCCC-----------cc-------------CCCCHHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINVDAI-----------HPGY-----------GF-------------LSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daI-----------HPGY-----------GF-------------LSEn~~Fa~~~~~~gi~FI 94 (103)
+|++|+++||||| +|.. +. ..+..++.+.|++.||.|+
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~ 73 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFF 73 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEE
Confidence 6899999999985 3321 11 2234577888999999986
No 154
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=39.94 E-value=32 Score=25.99 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANNINVDAI--HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+..++.|++.||++|..-| --=.|...|---|++.++.+|+...
T Consensus 39 ~~tRveEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~ 85 (157)
T PF08901_consen 39 KLTRVEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVY 85 (157)
T ss_pred ccchHHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEE
Confidence 36889999999999999864 3345667888889999999998754
No 155
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=39.84 E-value=45 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=28.3
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHcCCce--ecCCCccC
Q psy6380 40 DQGKRMPPVAAYLNNPEIICIANNINVDA--IHPGYGFL 76 (103)
Q Consensus 40 D~~~~~~~~~sYlni~~Ii~~A~~~g~da--IHPGYGFL 76 (103)
||+...++....-|++++++.+.+.|+++ |+|||...
T Consensus 24 Dh~~l~gp~~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~ 62 (258)
T TIGR01949 24 DHGVSNGPIKGLVDIRKTVNEVAEGGADAVLLHKGIVRR 62 (258)
T ss_pred CCccccCCCCCcCCHHHHHHHHHhcCCCEEEeCcchhhh
Confidence 55544235567889999999999999997 58888755
No 156
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=39.75 E-value=48 Score=26.93 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=37.2
Q ss_pred HHHcC-cEEEEeecccccccccce-ec----ccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLWL-LR----DQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~~-~A----D~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|++.+....+.. +. ..+ ....+..++-+++++++.+++.++|.|.
T Consensus 24 l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Ii 91 (379)
T TIGR02638 24 VKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLI 91 (379)
T ss_pred HHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 56678 899999987654332221 11 111 1224456788899999999999999876
No 157
>COG0218 Predicted GTPase [General function prediction only]
Probab=39.65 E-value=24 Score=27.50 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=14.6
Q ss_pred cCCCccCCCCHHHHHHHHh
Q psy6380 70 HPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 70 HPGYGFLSEn~~Fa~~~~~ 88 (103)
.|||||.+-..+..+...+
T Consensus 77 lPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 77 LPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCcccccCCHHHHHHHHH
Confidence 5999999988877666543
No 158
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=39.62 E-value=42 Score=27.49 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHcCCce-ecCCCc-cCC-----C-CHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDA-IHPGYG-FLS-----E-REDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~da-IHPGYG-FLS-----E-n~~Fa~~~~~~gi~FI 94 (103)
+.-.|+.+|++.||.. ||=-+- +|| . ...+.+.|++.||.|+
T Consensus 118 ~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv 167 (275)
T PF12683_consen 118 RGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFV 167 (275)
T ss_dssp HHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EE
T ss_pred ccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEE
Confidence 4568999999999985 553222 355 1 2345667899999997
No 159
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.21 E-value=63 Score=23.97 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE-eC
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF-IG 95 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F-IG 95 (103)
..++. .=++.|.+.|||.||-|- -+++..+.+...++.+ +|
T Consensus 70 tvl~~-d~~~~A~~~gAdgv~~p~----~~~~~~~~~~~~~~~~i~G 111 (187)
T PRK07455 70 TILTL-EDLEEAIAAGAQFCFTPH----VDPELIEAAVAQDIPIIPG 111 (187)
T ss_pred EEEcH-HHHHHHHHcCCCEEECCC----CCHHHHHHHHHcCCCEEcC
Confidence 45555 446777778888886555 3456667777766654 45
No 160
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=39.11 E-value=33 Score=27.43 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=20.9
Q ss_pred CCCCCCCChHHHHHHHHHcCCceec
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
.+..++-+++++++.+++.++|.|.
T Consensus 59 ~~~p~~~~v~~~~~~~~~~~~D~II 83 (366)
T PF00465_consen 59 GPNPTLEDVDEAAEQARKFGADCII 83 (366)
T ss_dssp SSS-BHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEE
Confidence 4566788999999999999999864
No 161
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=38.99 E-value=64 Score=24.36 Aligned_cols=37 Identities=8% Similarity=-0.081 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..++.++. ++..|+|.+..+ ++++.+.+.++|+...
T Consensus 186 ~~~~~~~~~-~~~~~~~~~~~~--~~~~v~~~~~~g~~v~ 222 (256)
T cd08601 186 DKWLDEIKE-YAIGIGPSIADA--DPWMVHLIHKKGLLVH 222 (256)
T ss_pred hhHHHHHHh-cCeEeCCchhhc--CHHHHHHHHHCCCEEE
Confidence 345566666 888999998765 6899999999998753
No 162
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=38.91 E-value=85 Score=23.42 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHc--CCce--ecCCCccC------CCCHHHHHHHHhCCCe
Q psy6380 51 YLNNPEIICIANNI--NVDA--IHPGYGFL------SEREDFAKAVIGAALE 92 (103)
Q Consensus 51 Ylni~~Ii~~A~~~--g~da--IHPGYGFL------SEn~~Fa~~~~~~gi~ 92 (103)
..+.+.+.+.+++. .+|. |..+||.= ++.-++++.+.+.|+-
T Consensus 158 ~~~~~~~~~~i~~lr~~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D 209 (239)
T cd07381 158 PLDLERIAADIAEAKKKADIVIVSLHWGVEYSYYPTPEQRELARALIDAGAD 209 (239)
T ss_pred ccCHHHHHHHHHHHhhcCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCC
Confidence 34455554443332 2664 66777752 1235788787776654
No 163
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=38.79 E-value=65 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
-++.+.+ +.|.+.|+|.||-+- .++++.+.+++.|+.+
T Consensus 63 v~~~~~~-~~a~~~Ga~~i~~p~----~~~~~~~~~~~~~~~~ 100 (190)
T cd00452 63 VLTPEQA-DAAIAAGAQFIVSPG----LDPEVVKAANRAGIPL 100 (190)
T ss_pred CCCHHHH-HHHHHcCCCEEEcCC----CCHHHHHHHHHcCCcE
Confidence 4445544 666778888888553 4677888887776654
No 164
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=38.50 E-value=60 Score=24.26 Aligned_cols=45 Identities=18% Similarity=0.054 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC----eEeCCCh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL----EFIGPTT 98 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi----~FIGP~~ 98 (103)
|...+++-.++.++|+|+-. +.-.+...|.+.+.+.|+ .++|++.
T Consensus 174 d~~~~i~~l~~~~~d~i~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 222 (333)
T cd06332 174 DFSAELAQIRAAKPDAVFVF-LPGGMAVNFVKQYDQAGLKKKIPLYGPGF 222 (333)
T ss_pred chHHHHHHHHhcCCCEEEEe-cccchHHHHHHHHHHcCcccCCceeccCC
Confidence 45556777789999999863 334577889999999888 4777653
No 165
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=38.47 E-value=32 Score=23.12 Aligned_cols=17 Identities=0% Similarity=-0.248 Sum_probs=15.1
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.||+||.
T Consensus 31 l~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 31 VENLREKVKAKGGMGLI 47 (74)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 67889999999999985
No 166
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=38.33 E-value=51 Score=26.80 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=36.7
Q ss_pred HHHcC-cEEEEeecccccccccce-ec----ccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLWL-LR----DQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~~-~A----D~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+..+.+..++. +. ..+ ....+..++-+++++++.+++.++|+|.
T Consensus 25 ~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 92 (382)
T PRK10624 25 VKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLI 92 (382)
T ss_pred HHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 45568 899999987654432321 11 111 1223455678899999999999999876
No 167
>KOG0140|consensus
Probab=38.00 E-value=17 Score=31.04 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=21.7
Q ss_pred cCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 64 INVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 64 ~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
++|--||=||||++|.| ..+.++++.|-
T Consensus 357 t~AvQifGG~Gfn~eYp-VeklmRDaki~ 384 (408)
T KOG0140|consen 357 TNAVQIFGGNGFNKEYP-VEKLMRDAKIY 384 (408)
T ss_pred HHHHHhhccCCcccccc-HHHHHhhhhhh
Confidence 44555999999999999 66777777653
No 168
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=37.95 E-value=48 Score=24.58 Aligned_cols=38 Identities=8% Similarity=-0.068 Sum_probs=21.8
Q ss_pred HHHHHHHcCCceecCCCccCC-----CCHHHHHHHHhCC-CeEe
Q psy6380 57 IICIANNINVDAIHPGYGFLS-----EREDFAKAVIGAA-LEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLS-----En~~Fa~~~~~~g-i~FI 94 (103)
-++.|++.|+|+|-.....+. +..++.+.+.+.| +.++
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~ii 127 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLM 127 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEE
Confidence 346666777777666554431 4455666666655 4443
No 169
>PLN02522 ATP citrate (pro-S)-lyase
Probab=37.84 E-value=65 Score=28.91 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHcCCcee---cCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 53 NNPEIICIANNINVDAI---HPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daI---HPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
-.|.+++.+.+.|+..| --|+....+ -.+.+.++++|++.|||+.
T Consensus 91 a~da~lEa~~a~GIk~~VIiteGfpe~d~-~~l~~~Ar~~g~rlIGPNc 138 (608)
T PLN02522 91 AAASSMEALKQPTIRVVAIIAEGVPESDT-KQLIAYARANNKVVIGPAT 138 (608)
T ss_pred hHHHHHHHHhhCCCCEEEEECCCCChhhH-HHHHHHHHHcCCEEECCCC
Confidence 36889999988787653 446665443 4577888899999999975
No 170
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=37.84 E-value=54 Score=26.58 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHcC-cEEEEeecccccccccc-eec----ccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 14 SLIQAG-TTIIILSKRKLEDSSLW-LLR----DQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 14 ~~~~~g-~tvai~t~~dl~~a~~~-~~A----D~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
.|++.| +.+.|+|++.+.+..+. ++. ..+ ....+..++-+++++++.+++.++|+|.
T Consensus 22 ~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 90 (377)
T cd08176 22 ELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFII 90 (377)
T ss_pred HHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 356678 78888988765321111 111 111 1224567788999999999999999876
No 171
>PF11503 DUF3215: Protein of unknown function (DUF3215); InterPro: IPR021591 This family of proteins with unknown function appears to be restricted to Saccharomycetaceae. ; PDB: 2GRG_A.
Probab=37.74 E-value=16 Score=24.71 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=11.4
Q ss_pred HHHcCcEEEEeec
Q psy6380 15 LIQAGTTIIILSK 27 (103)
Q Consensus 15 ~~~~g~tvai~t~ 27 (103)
.|+.|+|+|+||+
T Consensus 62 ~k~d~kT~vvyt~ 74 (77)
T PF11503_consen 62 FKQDGKTVVVYTE 74 (77)
T ss_dssp EEETTEEEEEEES
T ss_pred EecCCcEEEEEec
Confidence 4678999999998
No 172
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=37.66 E-value=61 Score=27.44 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCC
Q psy6380 60 IANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 60 ~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~ 97 (103)
+|.+.||-.|.-=-=|.+.+|+|+++.+++|+-.+|=.
T Consensus 145 AAl~aG~afVN~~P~~ia~~p~~a~~f~e~glPi~GDD 182 (351)
T TIGR03450 145 CAIDAGVAFVNALPVFIASDPEWAKKFTDAGVPIVGDD 182 (351)
T ss_pred HHHHcCCceEeccCccccCCHHHHHHHHHCCCCEeccc
Confidence 34444444444444467788888888888888888865
No 173
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=37.55 E-value=52 Score=27.17 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=36.4
Q ss_pred HHHHcC-cEEEEeecccccccccce-----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 14 SLIQAG-TTIIILSKRKLEDSSLWL-----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 14 ~~~~~g-~tvai~t~~dl~~a~~~~-----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
-|++.| +.+.|+++.-+.+..++. +.+.+ ....+..+.-++++.++.+++.++|.|.
T Consensus 43 ~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Ii 111 (395)
T PRK15454 43 QAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVI 111 (395)
T ss_pred HHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEE
Confidence 346778 888888887653332221 11111 1223455677799999999999999865
No 174
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=37.42 E-value=38 Score=26.55 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCceecCCCccCCCC--------HHHHHHHHhCCCeEe
Q psy6380 65 NVDAIHPGYGFLSER--------EDFAKAVIGAALEFI 94 (103)
Q Consensus 65 g~daIHPGYGFLSEn--------~~Fa~~~~~~gi~FI 94 (103)
+|++|||.|.++.-. +++++.+.++|+...
T Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~ 260 (296)
T cd08559 223 YADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVH 260 (296)
T ss_pred HhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEE
Confidence 899999999988632 799999999999864
No 175
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=37.25 E-value=50 Score=27.34 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHcC-cEEEEeecccccccccc-e----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 14 SLIQAG-TTIIILSKRKLEDSSLW-L----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 14 ~~~~~g-~tvai~t~~dl~~a~~~-~----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
.|++.| +.|.|+|++.+.....+ + +.+.+ ....+..++-+++++++.+++.++|.|.
T Consensus 17 ~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 85 (414)
T cd08190 17 DLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFV 85 (414)
T ss_pred HHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 356778 89999998865332221 0 11111 1223455788899999999999999863
No 176
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=37.06 E-value=53 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhhh
Q psy6380 62 NNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101 (103)
Q Consensus 62 ~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m 101 (103)
+-.|-+--+.||| .|+.||..++..+|+...-|+..+.
T Consensus 125 ~VNGf~n~f~GWG--gEDdd~~~Rl~~~g~~~~r~~~~~~ 162 (219)
T cd00899 125 KVNGFSNAYWGWG--GEDDDLYNRIKAAGLKITRPSGDTG 162 (219)
T ss_pred HhCCcCCcCccCC--cchHHHHHHHHHCCCeEEeccCccc
Confidence 3457777788998 5999999999999999988876654
No 177
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=36.41 E-value=63 Score=23.16 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=6.6
Q ss_pred HHHHHHHHHcCCce
Q psy6380 55 PEIICIANNINVDA 68 (103)
Q Consensus 55 ~~Ii~~A~~~g~da 68 (103)
+.+++.+++.|+..
T Consensus 93 ~~~i~~~~~~g~~~ 106 (202)
T cd04726 93 KKAVKAAKKYGKEV 106 (202)
T ss_pred HHHHHHHHHcCCeE
Confidence 44445555444444
No 178
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=36.39 E-value=1.4e+02 Score=22.72 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCC-CCHHHHHHHHhCCCeEeC
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLS-EREDFAKAVIGAALEFIG 95 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLS-En~~Fa~~~~~~gi~FIG 95 (103)
.|...+.++++.++.|.|++-+|-=-+. .-..|.+.+.+.++.|++
T Consensus 56 ~~~~g~~~~~~l~~l~~d~~~~GNHefd~g~~~l~~~~~~~~~~~L~ 102 (257)
T cd07406 56 TATKGKQMVPVLNALGVDLACFGNHEFDFGEDQLQKRLGESKFPWLS 102 (257)
T ss_pred hhcCCccHHHHHHhcCCcEEeecccccccCHHHHHHHHhhCCCCEEE
Confidence 4556678999999999999877643222 334677778888888876
No 179
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=36.28 E-value=41 Score=25.90 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=26.5
Q ss_pred HHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 62 NNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 62 ~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
...|++.|+|-|.++ +++|.+.+.++|+...
T Consensus 202 ~~~~~~~v~~~~~~~--~~~~v~~~~~~G~~v~ 232 (258)
T cd08573 202 YFLGVSALLIHKDDI--SSAYVRYWRARGIRVI 232 (258)
T ss_pred hhcCeeEEEechHhc--CHHHHHHHHHCCCEEE
Confidence 457999999999986 6789999999998764
No 180
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=36.02 E-value=94 Score=23.11 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH---hCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI---GAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~---~~gi~FI 94 (103)
+.+-++.+.+.|++.|+--||....+..+.+.+. +.|+.|+
T Consensus 114 ~~~ai~~a~~~~~~iin~S~g~~~~~~~~~~~~~~a~~~gilvV 157 (260)
T cd07484 114 IANGIRYAADKGAKVINLSLGGGLGSTALQEAINYAWNKGVVVV 157 (260)
T ss_pred HHHHHHHHHHCCCeEEEecCCCCCCCHHHHHHHHHHHHCCCEEE
Confidence 4455677888999999999998878888887774 5788886
No 181
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=35.83 E-value=61 Score=26.10 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=37.4
Q ss_pred HHHcC-cEEEEeecccccccccc-ee----cccC------CCCCCCCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLW-LL----RDQG------KRMPPVAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~-~~----AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
|++.| +.+.|+|++.+.+..+. ++ .+.+ ....+..++-+++++++.+++.++|.|. -|=|
T Consensus 19 l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 91 (370)
T cd08192 19 CAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGG 91 (370)
T ss_pred HHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 45668 88888888754322111 11 1111 1224456788899999999999999876 4443
No 182
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=35.81 E-value=76 Score=23.86 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
..-+..|+..|++.|...|-.|- |+.+-.+.+.+.|+.+
T Consensus 195 ~~~~~~lv~~a~~~~~~viAeGV----Et~eq~~~l~~lG~d~ 233 (255)
T PRK11596 195 RNLFSQLLHLMNRYCRGVIVEGV----ETPEEWRDVQRSPAFA 233 (255)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeC----CCHHHHHHHHHCCCCE
Confidence 33477889999999999999999 9999999999999873
No 183
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=35.68 E-value=1.1e+02 Score=22.72 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=18.5
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSER 79 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn 79 (103)
..+.|++|++.|+..|.-..|...++
T Consensus 86 ~~~~i~~a~~lg~~~i~~~~g~~~~~ 111 (254)
T TIGR03234 86 VALAIAYARALGCPQVNCLAGKRPAG 111 (254)
T ss_pred HHHHHHHHHHhCCCEEEECcCCCCCC
Confidence 44688999999999875555554433
No 184
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=35.47 E-value=85 Score=24.48 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHcC-cEEEEeecccc--cccccceecccCCCCCC-CCCCCChHHHHHHHHHcCCceecCCCccCCC--CHHHHHHHHh
Q psy6380 15 LIQAG-TTIIILSKRKL--EDSSLWLLRDQGKRMPP-VAAYLNNPEIICIANNINVDAIHPGYGFLSE--REDFAKAVIG 88 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl--~~a~~~~~AD~~~~~~~-~~sYlni~~Ii~~A~~~g~daIHPGYGFLSE--n~~Fa~~~~~ 88 (103)
..+.| .-+.|+|+++. .+..+++..=....+|- .+.|.....-+..|...|||+|+-.-..|+. =.+|.+.+.+
T Consensus 79 ~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~ 158 (260)
T PRK00278 79 YEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHS 158 (260)
T ss_pred HHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHH
Confidence 34556 77778888764 12112211111122111 2557777777888999999999998888753 2233344444
Q ss_pred CCC
Q psy6380 89 AAL 91 (103)
Q Consensus 89 ~gi 91 (103)
.|+
T Consensus 159 lGl 161 (260)
T PRK00278 159 LGL 161 (260)
T ss_pred cCC
Confidence 444
No 185
>PRK02877 hypothetical protein; Provisional
Probab=35.40 E-value=36 Score=23.82 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=15.1
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.||+||.
T Consensus 62 ~~rm~~~A~~lGAnAVI 78 (106)
T PRK02877 62 FEELGEQARALGADAVV 78 (106)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 57889999999999985
No 186
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=35.32 E-value=50 Score=27.13 Aligned_cols=42 Identities=12% Similarity=0.007 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHcCCceec-C-CCc---cCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIH-P-GYG---FLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIH-P-GYG---FLSEn~~Fa~~~~~~gi~FI 94 (103)
.++.|++.+++.+||+|. - -+| +..|.+.+.+.+++.||-|+
T Consensus 309 R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L 355 (380)
T TIGR02263 309 KGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI 355 (380)
T ss_pred HHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence 567899999999999852 2 222 57799999999999999775
No 187
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=35.28 E-value=83 Score=23.64 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
++.+..++.+++.|-|.|=-..-+-..-.++.+.+++.||.+.
T Consensus 15 ~~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 15 YDFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHT 57 (258)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEE
Confidence 3577888888888888876433233344677778888888875
No 188
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=35.16 E-value=70 Score=25.94 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=27.6
Q ss_pred HHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 59 CIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 59 ~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
....+.+++.+||.|..+. +++.+.+.++|+...
T Consensus 216 ~~l~~~~~~~l~~~~~~l~--~~~v~~a~~~Gl~V~ 249 (316)
T cd08610 216 ETLLKNNISILNLAYKKLF--SNDIRDYKAANIHTN 249 (316)
T ss_pred HHHHHcCCeEEccchhhCC--HHHHHHHHHCCCEEE
Confidence 3345679999999998884 789999999998753
No 189
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=34.95 E-value=20 Score=31.68 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.5
Q ss_pred HHHHcCcEEEEeecccccccccceeccc
Q psy6380 14 SLIQAGTTIIILSKRKLEDSSLWLLRDQ 41 (103)
Q Consensus 14 ~~~~~g~tvai~t~~dl~~a~~~~~AD~ 41 (103)
-||+.|+||..+|+.| .|..+||.
T Consensus 494 ~LK~qGKTI~aIsHDd----~YF~~ADr 517 (546)
T COG4615 494 LLKEQGKTIFAISHDD----HYFIHADR 517 (546)
T ss_pred HHHHhCCeEEEEecCc----hhhhhHHH
Confidence 4899999999999977 67788886
No 190
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=34.91 E-value=2e+02 Score=23.07 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=11.6
Q ss_pred HHHHcCcEEEEeecc
Q psy6380 14 SLIQAGTTIIILSKR 28 (103)
Q Consensus 14 ~~~~~g~tvai~t~~ 28 (103)
.+.++|+.||++||.
T Consensus 79 ~~l~~G~~ValvSda 93 (287)
T PRK14994 79 AKLQEGQNIALVSDA 93 (287)
T ss_pred HHHHCCCeEEEEccC
Confidence 455689999999953
No 191
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.86 E-value=78 Score=23.61 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+.+.++..|++.++|-|-. -++++.+.+.++|+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~G~~v~ 235 (263)
T cd08567 199 NLPRAAKKLGADIWSPYFTL--VTKELVDEAHALGLKVV 235 (263)
T ss_pred CHHHHHHHhCCcEEecchhh--cCHHHHHHHHHCCCEEE
Confidence 45566788899999988754 46789999999998854
No 192
>PRK12855 hypothetical protein; Provisional
Probab=34.39 E-value=38 Score=23.67 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=15.2
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++++-|++.||+||.
T Consensus 62 ~~rm~~~A~~lGAnAVV 78 (103)
T PRK12855 62 MEEMKTLARQKNANAIV 78 (103)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 67899999999999985
No 193
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=34.27 E-value=26 Score=28.79 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=21.1
Q ss_pred HHcCCceecCCCc-cCCCCHH-HHHHHHh
Q psy6380 62 NNINVDAIHPGYG-FLSERED-FAKAVIG 88 (103)
Q Consensus 62 ~~~g~daIHPGYG-FLSEn~~-Fa~~~~~ 88 (103)
.+.|||.|+-|-| |-|+||+ +++++-+
T Consensus 227 M~LGadGVFVGSGIFKS~~P~~~A~AIV~ 255 (296)
T COG0214 227 MQLGADGVFVGSGIFKSSNPEKRAKAIVE 255 (296)
T ss_pred HHhCCCeEEecccccCCCCHHHHHHHHHH
Confidence 3579999999999 9999995 4454433
No 194
>PRK13561 putative diguanylate cyclase; Provisional
Probab=34.26 E-value=77 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
=+..|+++|+..|...|-.|- |+++-.+.+.+.|+.++
T Consensus 592 ~v~~i~~~a~~l~i~viAegV----E~~~~~~~l~~~g~d~~ 629 (651)
T PRK13561 592 MVAAIIMLAQSLNLQVIAEGV----ETEAQRDWLLKAGVGIA 629 (651)
T ss_pred HHHHHHHHHHHCCCcEEEecC----CCHHHHHHHHhcCCCEE
Confidence 377899999999999999999 99999999999998653
No 195
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=34.07 E-value=67 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.|...+++-.+..++|+|.-++ .-.+...|.+.+++.|+.
T Consensus 176 ~D~s~~v~~l~~~~pDav~~~~-~~~~~~~~~~~~~~~G~~ 215 (359)
T TIGR03407 176 TDFQTIINKIKAFKPDVVFNTL-NGDSNVAFFKQLKNAGIT 215 (359)
T ss_pred HhHHHHHHHHHHhCCCEEEEec-cCCCHHHHHHHHHHcCCC
Confidence 5678899999999999997432 334557899999999873
No 196
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=33.99 E-value=1.7e+02 Score=20.79 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHH--cCCce-ecCCC
Q psy6380 14 SLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANN--INVDA-IHPGY 73 (103)
Q Consensus 14 ~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~--~g~da-IHPGY 73 (103)
...++|++|++++..| .. -|-....+++.+++ .|++. |+||-
T Consensus 71 ~~~~~g~~V~~l~~GD---P~---------------~~~~~~~l~~~l~~~~~gi~v~iiPGi 115 (210)
T PF00590_consen 71 EAAKEGKDVVVLVSGD---PL---------------FFSTGSYLVRALRAEERGIEVEIIPGI 115 (210)
T ss_dssp HHHHTTSEEEEEESBS---TT---------------SSSSHHHHHHHHHHHHTTCEEEEE--T
T ss_pred HHHhccCCEEEeCCCC---CC---------------cccHHHHHHHHHHhhcCCCceEEEecC
Confidence 4456788999999877 11 13345667776666 67664 67776
No 197
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=33.93 E-value=18 Score=27.54 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=12.7
Q ss_pred CHHHHHHHHhCCCeEeCCCh
Q psy6380 79 REDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 79 n~~Fa~~~~~~gi~FIGP~~ 98 (103)
...+++.+.+.|..|+||..
T Consensus 137 s~~isk~lkk~GF~FvGpt~ 156 (179)
T PF03352_consen 137 SEAISKDLKKRGFKFVGPTT 156 (179)
T ss_dssp HHHHHHHHHHTT--S--HHH
T ss_pred HHHHHHHHHhCcceeECHHH
Confidence 45688889999999999953
No 198
>PRK10551 phage resistance protein; Provisional
Probab=33.67 E-value=70 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=33.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
++.|+++|++.|.+.|-.|- |+.+=.+.+.+.|+.++
T Consensus 456 l~~ii~la~~lgi~vVAEGV----Et~~q~~~L~~~Gv~~~ 492 (518)
T PRK10551 456 LDAVLTLAKRLNMLTVAEGV----ETPEQARWLRERGVNFL 492 (518)
T ss_pred HHHHHHHHHHCCCEEEEEeC----CcHHHHHHHHHcCCCEE
Confidence 67799999999999999999 99999999999998765
No 199
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=33.57 E-value=71 Score=25.59 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=39.2
Q ss_pred HHHcC-cEEEEeecccccccccce-e----cccC------CCCCCCCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLWL-L----RDQG------KRMPPVAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~~-~----AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
|++.| +.+.|+|+..+.+..+.. + .+.+ .......++-+++++++.+++.++|+|. -|=|
T Consensus 18 l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGG 90 (370)
T cd08551 18 IKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGG 90 (370)
T ss_pred HHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 55667 899999998753322211 1 1111 1234567899999999999999999866 4444
No 200
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=33.45 E-value=2.1e+02 Score=21.45 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=10.4
Q ss_pred HHcCcEEEEeeccc
Q psy6380 16 IQAGTTIIILSKRK 29 (103)
Q Consensus 16 ~~~g~tvai~t~~d 29 (103)
.+.|++|++++..|
T Consensus 87 ~~~g~~V~~l~~GD 100 (229)
T PRK05576 87 AEEGKNVAFITLGD 100 (229)
T ss_pred HHcCCcEEEEeCcC
Confidence 35678888888766
No 201
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=33.39 E-value=73 Score=24.92 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
+-.|...++..++..++|+|+-+. .-++...|.+.+++.|+.
T Consensus 174 ~~~d~s~~v~~l~~~~pd~V~~~~-~~~~~~~~~~~~~~~G~~ 215 (360)
T cd06357 174 SDEDFARIVEEIREAQPDFIFSTL-VGQSSYAFYRAYAAAGFD 215 (360)
T ss_pred chhhHHHHHHHHHHcCCCEEEEeC-CCCChHHHHHHHHHcCCC
Confidence 356788999999999999998544 456778899999998875
No 202
>TIGR03586 PseI pseudaminic acid synthase.
Probab=33.27 E-value=54 Score=26.95 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=16.2
Q ss_pred CCCChHHHHHHHHHcCCcee
Q psy6380 50 AYLNNPEIICIANNINVDAI 69 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daI 69 (103)
+.-..-++|+.|++.|||+|
T Consensus 15 ~~~~A~~lI~~A~~aGAdav 34 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAI 34 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEE
Confidence 45557789999999999973
No 203
>PRK10060 RNase II stability modulator; Provisional
Probab=33.18 E-value=77 Score=27.56 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=38.2
Q ss_pred CCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 47 PVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 47 ~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..+..-+..|+++|+..|...|-.|- |+.+-.+.+.+.|+.++
T Consensus 593 ~~~~~~~v~~ii~~a~~lg~~viAeGV----Et~~q~~~l~~~G~d~~ 636 (663)
T PRK10060 593 QPVSQSLVRAIVAVAQALNLQVIAEGV----ETAKEDAFLTKNGVNER 636 (663)
T ss_pred CcchHHHHHHHHHHHHHCCCcEEEecC----CCHHHHHHHHHcCCCEE
Confidence 344566689999999999999999999 99999999999998754
No 204
>KOG4175|consensus
Probab=33.04 E-value=61 Score=26.24 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=26.5
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.++-|+.|++.|+....--=--+-|--.|++.|.++||.|+
T Consensus 112 ~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislv 152 (268)
T KOG4175|consen 112 VENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLV 152 (268)
T ss_pred HHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEE
Confidence 46677777777765311111124566778888999998876
No 205
>PRK07064 hypothetical protein; Provisional
Probab=32.96 E-value=87 Score=26.32 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHHh-CCCeEeCCChhh
Q psy6380 54 NPEIICIANNINVDAI--HPGYGFLSEREDFAKAVIG-AALEFIGPTTNV 100 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~~-~gi~FIGP~~~~ 100 (103)
.+.|++..++.|++.| .|| +.+..|-+.+.+ .+|++|....|.
T Consensus 6 ~~~l~~~L~~~Gv~~vFgvpG----~~~~~l~~al~~~~~i~~i~~~hE~ 51 (544)
T PRK07064 6 GELIAAFLEQCGVKTAFGVIS----IHNMPILDAIGRRGKIRFVPARGEA 51 (544)
T ss_pred HHHHHHHHHHcCCCEEEeCCC----CcchHHHHHHhccCCccEEeeccHH
Confidence 5788999999999999 788 455667788865 589999887664
No 206
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=32.92 E-value=75 Score=25.85 Aligned_cols=56 Identities=16% Similarity=0.411 Sum_probs=35.9
Q ss_pred C-cEEEEeecccc-cccccc-eec----ccC------CCCCCCCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 19 G-TTIIILSKRKL-EDSSLW-LLR----DQG------KRMPPVAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 19 g-~tvai~t~~dl-~~a~~~-~~A----D~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
| +.+.|+|++.. ....++ ++. ..+ ....+..++-+++++++.+++.++|+|. -|=|
T Consensus 25 g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 94 (383)
T cd08186 25 GISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGG 94 (383)
T ss_pred CCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 7 78889998753 212211 111 111 2335567899999999999999999876 4443
No 207
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=32.91 E-value=88 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC-----eEeCCC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL-----EFIGPT 97 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi-----~FIGP~ 97 (103)
-|...+++-+++.++|+|.-. ++-.+...|.+.+.+.|+ .++|++
T Consensus 175 ~D~~~~v~~l~~~~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 224 (348)
T cd06355 175 TDFQSIINKIKAAKPDVVVST-VNGDSNVAFFKQLKAAGITASKVPVLSFS 224 (348)
T ss_pred hhHHHHHHHHHHhCCCEEEEe-ccCCchHHHHHHHHHcCCCccCCeeEEcc
Confidence 567889999999999998753 234566889999999986 356654
No 208
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.82 E-value=77 Score=26.22 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCceecCCCccC--------CCCHHHHHHHHhCCCeEe
Q psy6380 56 EIICIANNINVDAIHPGYGFL--------SEREDFAKAVIGAALEFI 94 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFL--------SEn~~Fa~~~~~~gi~FI 94 (103)
..++..+..+++.|+|-+.++ ....++++...++|+..+
T Consensus 249 ~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~ 295 (356)
T cd08560 249 PSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDII 295 (356)
T ss_pred HHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEE
Confidence 345666678999999998755 246789999999998764
No 209
>PRK01119 hypothetical protein; Provisional
Probab=32.69 E-value=42 Score=23.45 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=15.2
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++++-|++.||+||.
T Consensus 62 ~~rm~~~A~~lGAnAVI 78 (106)
T PRK01119 62 IREMEQRAKDIGANAVI 78 (106)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 58899999999999975
No 210
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=32.57 E-value=76 Score=27.93 Aligned_cols=49 Identities=27% Similarity=0.256 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHcCCcee-cCCCc-cCCCCHHHHHHHHhCCCe-----EeCCChhh
Q psy6380 52 LNNPEIICIANNINVDAI-HPGYG-FLSEREDFAKAVIGAALE-----FIGPTTNV 100 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daI-HPGYG-FLSEn~~Fa~~~~~~gi~-----FIGP~~~~ 100 (103)
-|+-.|+.+|++.|.+.| ..=.| .|+.+++|+++++++|+. |=|.++++
T Consensus 125 ~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~~tvYlsFDG~~e~~ 180 (475)
T COG1964 125 DDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVNTVYLSFDGVTPKT 180 (475)
T ss_pred hhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCCcEEEEecCCCCCCc
Confidence 367789999999998653 33444 688999999999999975 44555443
No 211
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=32.43 E-value=91 Score=22.81 Aligned_cols=24 Identities=33% Similarity=0.402 Sum_probs=17.2
Q ss_pred ccCCcchHHHHHcC-cEEEEeeccc
Q psy6380 6 YPCKDNYDSLIQAG-TTIIILSKRK 29 (103)
Q Consensus 6 ~~~~~~~~~~~~~g-~tvai~t~~d 29 (103)
||=..|+--|++.| |||.-+++++
T Consensus 19 ~P~~~n~~fL~~L~LKTII~L~~e~ 43 (164)
T PF03162_consen 19 QPTPANFPFLERLGLKTIINLRPEP 43 (164)
T ss_dssp S--HHHHHHHHHHT-SEEEE--SS-
T ss_pred CCChhhHHHHHHCCCceEEEecCCC
Confidence 56678999999999 9999999876
No 212
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=32.20 E-value=2.1e+02 Score=21.10 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=10.1
Q ss_pred HcCcEEEEeeccc
Q psy6380 17 QAGTTIIILSKRK 29 (103)
Q Consensus 17 ~~g~tvai~t~~d 29 (103)
++|+.|++++..|
T Consensus 75 ~~g~~V~~l~~GD 87 (236)
T TIGR01469 75 REGKKVVRLKGGD 87 (236)
T ss_pred HCCCeEEEEeCcC
Confidence 5678888888776
No 213
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.75 E-value=30 Score=26.38 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCeEeCCCh
Q psy6380 80 EDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 80 ~~Fa~~~~~~gi~FIGP~~ 98 (103)
-.+.+.+.+.|.+|+||..
T Consensus 140 ~~lskdLKkrGfkFvGpt~ 158 (179)
T TIGR00624 140 KAMSKELKKRGFRFVGPTI 158 (179)
T ss_pred HHHHHHHHHcCCeecChHH
Confidence 4577888999999999975
No 214
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=31.74 E-value=93 Score=25.02 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCCCChHHHHH----HHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIIC----IANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~----~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.||-+.+..++ +.++.||++|+--=| .|..+..+.+.++||-++
T Consensus 86 ~sy~~~e~a~~na~rl~~eaGa~aVkiEgg--~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 86 MSYATPEQALKNAARVMQETGANAVKLEGG--EWLVETVQMLTERGVPVV 133 (263)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCeEEEEcCc--HhHHHHHHHHHHCCCCEE
Confidence 47877777544 445589999987655 456677788889998877
No 215
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=31.58 E-value=77 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHcC-cEEEEeecccccccccc-e----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLW-L----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~-~----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+..+....++ + +.+.+ ....+..++-+++++++.+++.++|.|.
T Consensus 21 l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 88 (376)
T cd08193 21 LAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVI 88 (376)
T ss_pred HHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 45557 88999998765332221 1 11111 1234567888899999999999999864
No 216
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=31.53 E-value=82 Score=24.23 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=32.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
....+..|+..+++.++++.-.+.-++.|.+.+.+.|+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~ 249 (286)
T cd08606 209 LQEAIRFAKQWNLLGLVSAAEPLVMCPRLIQVVKRSGLVCV 249 (286)
T ss_pred HHHHHHHHHHCCCeEEEechHHhhhChHHHHHHHHCCcEEE
Confidence 34456778888999988866555568899999999998875
No 217
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=31.47 E-value=89 Score=28.64 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=34.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCC-HHHHHHHHhCCCeEeCCChhh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSER-EDFAKAVIGAALEFIGPTTNV 100 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn-~~Fa~~~~~~gi~FIGP~~~~ 100 (103)
+..+++.|++.|..+-. +|.+..+ |+++..+...|++|+--++++
T Consensus 731 i~~vi~aa~~~g~~vgi--cge~a~~~p~~~~~l~~~G~~~ls~~~d~ 776 (795)
T PRK06464 731 ISMAIKAAKKAGKYVGI--CGQAPSDHPDFAEWLVEEGIDSISLNPDA 776 (795)
T ss_pred HHHHHHHHHHcCCEEEE--cCCCCCCcHHHHHHHHHCCCCEEEEcchh
Confidence 67888999999876543 5545555 999999999999997655544
No 218
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=31.43 E-value=29 Score=26.61 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCeEeCCCh
Q psy6380 81 DFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 81 ~Fa~~~~~~gi~FIGP~~ 98 (103)
.+.+.+.+.|..|+||..
T Consensus 144 ~lskdLKkrGFkFvGpt~ 161 (187)
T PRK10353 144 ALSKALKKRGFKFVGTTI 161 (187)
T ss_pred HHHHHHHHcCCcccCcHH
Confidence 578888999999999974
No 219
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=31.40 E-value=81 Score=23.19 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=33.9
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHH-HHHHH--hCCCeEeCCCh
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDF-AKAVI--GAALEFIGPTT 98 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~F-a~~~~--~~gi~FIGP~~ 98 (103)
...-+++.+++++++.++..+.-|-|-..+...- .+... ...+.|.|.-+
T Consensus 181 ~~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~ 233 (335)
T cd03802 181 SPEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVG 233 (335)
T ss_pred ccccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCC
Confidence 3456789999999999999999888753332211 11221 46799999744
No 220
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=31.16 E-value=2.1e+02 Score=22.00 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=10.6
Q ss_pred HcCcEEEEeeccc
Q psy6380 17 QAGTTIIILSKRK 29 (103)
Q Consensus 17 ~~g~tvai~t~~d 29 (103)
++|++|++++-.|
T Consensus 78 ~~g~~Vv~L~sGD 90 (257)
T PRK15473 78 KAGKTVVRLQTGD 90 (257)
T ss_pred HCCCeEEEEeCcC
Confidence 4678999999877
No 221
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=31.08 E-value=43 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
-|.|.+...++++++|||++-+..|
T Consensus 154 ~yT~peeA~~Fv~~TgvD~LAvaiG 178 (285)
T PRK07709 154 IYADPAECKHLVEATGIDCLAPALG 178 (285)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEeec
Confidence 3999999999999999999777665
No 222
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.04 E-value=2.3e+02 Score=21.19 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=9.9
Q ss_pred HcCcEEEEeeccc
Q psy6380 17 QAGTTIIILSKRK 29 (103)
Q Consensus 17 ~~g~tvai~t~~d 29 (103)
++|+.|++++-.|
T Consensus 78 ~~g~~V~~l~~GD 90 (249)
T PRK06136 78 RKGKVVVRLKGGD 90 (249)
T ss_pred HCCCeEEEEeCCC
Confidence 5678888887766
No 223
>KOG2387|consensus
Probab=30.98 E-value=39 Score=30.09 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCCCCCCChHHHHHHHHHcC-Ccee---cCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 46 PPVAAYLNNPEIICIANNIN-VDAI---HPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g-~daI---HPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+....|+.... -.++|..| ++.| |..- ---||++++.++++|+.|+|-+.
T Consensus 451 G~R~t~f~~~~-s~~~kLYG~~~~V~ERHRHR--yEVNP~~v~~le~~Gl~FvGkd~ 504 (585)
T KOG2387|consen 451 GSRRTVFQDKD-SKLRKLYGNVEFVDERHRHR--YEVNPEMVKQLEQAGLSFVGKDV 504 (585)
T ss_pred cccceeeecCc-hHHHHHhCCchhhhhhhhcc--eecCHHHHHHHHhcCcEEEeecC
Confidence 44555555444 44555555 3333 3332 34599999999999999999653
No 224
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=30.95 E-value=62 Score=25.09 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=25.5
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHcCCcee--cCCC
Q psy6380 40 DQGKRMPPVAAYLNNPEIICIANNINVDAI--HPGY 73 (103)
Q Consensus 40 D~~~~~~~~~sYlni~~Ii~~A~~~g~daI--HPGY 73 (103)
||+...++....-+++++++.|.+.|+++| +|||
T Consensus 27 Dh~~l~gp~~~~~d~~~~~~~a~~~~~~av~v~~~~ 62 (267)
T PRK07226 27 DHGVSHGPIDGLVDIRDTVNKVAEGGADAVLMHKGL 62 (267)
T ss_pred CCccccCCCcCcCCHHHHHHHHHhcCCCEEEeCHhH
Confidence 555442345678899999999999999985 5655
No 225
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=30.95 E-value=91 Score=23.35 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHcCCceec-CCCccCCCCHHHHHHHHhCCCe--EeCCC
Q psy6380 51 YLNNPEIICIANNINVDAIH-PGYGFLSEREDFAKAVIGAALE--FIGPT 97 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIH-PGYGFLSEn~~Fa~~~~~~gi~--FIGP~ 97 (103)
-.|...+++..++.+.|+|. .|+ -.+...|.+.+.+.|+. |+|..
T Consensus 176 ~~d~~~~l~~i~~~~~~~vi~~~~--~~~~~~~~~~~~~~g~~~~~~~~~ 223 (334)
T cd06342 176 ATDFSAILTKIKAANPDAVFFGGY--YPEAGPLVRQMRQLGLKAPFMGGD 223 (334)
T ss_pred CccHHHHHHHHHhcCCCEEEEcCc--chhHHHHHHHHHHcCCCCcEEecC
Confidence 36788889999999999985 443 34667788888888774 67654
No 226
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=30.60 E-value=1.8e+02 Score=24.14 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCCCCCCChHHHHHHHHHcCCceecCC------CccC-CCC----HHHHHHHHhCCCe
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAIHPG------YGFL-SER----EDFAKAVIGAALE 92 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daIHPG------YGFL-SEn----~~Fa~~~~~~gi~ 92 (103)
++..+-++....++.+++.|.++|=.. |+.- +|. .++.+.+++.||.
T Consensus 26 ~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 26 DATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLK 83 (382)
T ss_pred CCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCe
Confidence 444677899999999999999998655 2222 222 4789999999998
No 227
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.56 E-value=82 Score=23.88 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe--EeCCC
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE--FIGPT 97 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~--FIGP~ 97 (103)
=.|...+++-.+..++|+|.-. ++-.+-..|.+.+.+.|+. |+|++
T Consensus 178 ~~d~~~~v~~l~~~~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~ 225 (312)
T cd06346 178 KSSYSSEVAAAAAGGPDALVVI-GYPETGSGILRSAYEQGLFDKFLLTD 225 (312)
T ss_pred CCCHHHHHHHHHhcCCCEEEEe-cccchHHHHHHHHHHcCCCCceEeec
Confidence 3577888888899999998533 3444777888888888874 77654
No 228
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=30.51 E-value=1e+02 Score=22.39 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHcCCce--ecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 53 NNPEIICIANNINVDA--IHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 53 ni~~Ii~~A~~~g~da--IHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
+.++-++.+.+.|+|. ||-+. -.+...+.+.+.+.|+.
T Consensus 72 d~~~~i~~~~~~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~ 111 (220)
T PRK05581 72 NPDRYVPDFAKAGADIITFHVEA--SEHIHRLLQLIKSAGIK 111 (220)
T ss_pred CHHHHHHHHHHcCCCEEEEeecc--chhHHHHHHHHHHcCCE
Confidence 4555678888999999 66553 34445667777777765
No 229
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.44 E-value=21 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=19.0
Q ss_pred HHHHHcCCceecCCCccCCC-------CHHHHHHHHhCCCeEe
Q psy6380 59 CIANNINVDAIHPGYGFLSE-------REDFAKAVIGAALEFI 94 (103)
Q Consensus 59 ~~A~~~g~daIHPGYGFLSE-------n~~Fa~~~~~~gi~FI 94 (103)
+.|++.|.+.|-........ -.++.+.++++||...
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEE
Confidence 45666666665444332222 2356666666666643
No 230
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=30.42 E-value=1.8e+02 Score=19.94 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHHcCcEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCcee---cCCCccCCCCHHHHHHH
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAI---HPGYGFLSEREDFAKAV 86 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daI---HPGYGFLSEn~~Fa~~~ 86 (103)
.+|++.|..|+.+-+.. +..++. =|+.+. |....+. .++++++.++.+| .|.-|-+.---...+.+
T Consensus 21 ~~l~~~~~~v~~~kp~~--~~d~vl--iEGaGg~~~p~~~~~~----~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l 92 (134)
T cd03109 21 RALKEKGYRVAPLKPVQ--TYDFVL--VEGAGGLCVPLKEDFT----NADVAKELNLPAILVTSAGLGSINHAFLTIEAA 92 (134)
T ss_pred HHHHHCCCeEEEEecCC--CCCEEE--EECCCccccCCCCCCC----HHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHH
Confidence 56889999999987754 212211 134332 2222332 5577777787763 44455333223344566
Q ss_pred HhCCCeEeC
Q psy6380 87 IGAALEFIG 95 (103)
Q Consensus 87 ~~~gi~FIG 95 (103)
+..|+.+.|
T Consensus 93 ~~~g~~i~g 101 (134)
T cd03109 93 RIKGIILNG 101 (134)
T ss_pred HhcCCceeE
Confidence 778877554
No 231
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=30.36 E-value=2.1e+02 Score=22.02 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=10.6
Q ss_pred HcCcEEEEeeccc
Q psy6380 17 QAGTTIIILSKRK 29 (103)
Q Consensus 17 ~~g~tvai~t~~d 29 (103)
++|++|++++-.|
T Consensus 90 ~~g~~Vvvl~~GD 102 (263)
T PLN02625 90 EAGKTVVRLKGGD 102 (263)
T ss_pred HCCCeEEEEcCCC
Confidence 5688899888877
No 232
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=1.3e+02 Score=25.92 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=45.0
Q ss_pred CCCCccCCcchHHHHH--cCcEEEEeecccccccccceeccc--CCCCCCCCCCCCh-------HHHHHH----HHHcCC
Q psy6380 2 EFPTYPCKDNYDSLIQ--AGTTIIILSKRKLEDSSLWLLRDQ--GKRMPPVAAYLNN-------PEIICI----ANNINV 66 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~g~tvai~t~~dl~~a~~~~~AD~--~~~~~~~~sYlni-------~~Ii~~----A~~~g~ 66 (103)
+|+.|||-+ -+.+.+ .+..|+|.+..-+ .+.+-- ..+.-+...|+|+ +++|+. |+++|+
T Consensus 53 ~~~~~p~~~-p~~~~~~~~~~~VVlncvGPy-----t~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga 126 (382)
T COG3268 53 EAAVFPLGV-PAALEAMASRTQVVLNCVGPY-----TRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGA 126 (382)
T ss_pred cccccCCCC-HHHHHHHHhcceEEEeccccc-----cccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCC
Confidence 689999986 333333 2355666555432 111000 0011223346664 455554 888888
Q ss_pred ceecCCCccCCCCHHH-HHHHH
Q psy6380 67 DAIHPGYGFLSEREDF-AKAVI 87 (103)
Q Consensus 67 daIHPGYGFLSEn~~F-a~~~~ 87 (103)
.|.||.||=|--.|. .-.|.
T Consensus 127 -~Ii~~cGFDsIPsDl~v~~l~ 147 (382)
T COG3268 127 -RIIPGCGFDSIPSDLGVYALL 147 (382)
T ss_pred -EEeccCCCCcCccchHHHHHH
Confidence 578899999998888 44443
No 233
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.23 E-value=1e+02 Score=23.57 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=29.0
Q ss_pred CCCCChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-+-++.+.. +.|.+.|++. |=||+ |++..+.|.++||.+|
T Consensus 73 GTV~~~~~~-~~a~~aGA~FivsP~~-----~~~v~~~~~~~~i~~i 113 (213)
T PRK06552 73 GTVLDAVTA-RLAILAGAQFIVSPSF-----NRETAKICNLYQIPYL 113 (213)
T ss_pred eeCCCHHHH-HHHHHcCCCEEECCCC-----CHHHHHHHHHcCCCEE
Confidence 456667665 6667788886 55766 7888888888888775
No 234
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=29.76 E-value=99 Score=21.00 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHHcCCceecCCCc---cCC------CCHHHHHHHHhCCCeEeC
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYG---FLS------EREDFAKAVIGAALEFIG 95 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYG---FLS------En~~Fa~~~~~~gi~FIG 95 (103)
.-++..|++.+++.+++.|.-++- ..+ =|..+.+.|.+.++.|+-
T Consensus 87 ~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d 140 (177)
T cd01822 87 RANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVP 140 (177)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEec
Confidence 356788999999889888763321 111 134455666778888873
No 235
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.62 E-value=1.4e+02 Score=23.29 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=32.7
Q ss_pred CCCCCChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 48 VAAYLNNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.-+-+|.+.. +.|.+.|++. |=||+ |+++.+.|.+.||.+|
T Consensus 75 aGTVl~~e~a-~~a~~aGA~FiVsP~~-----~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 75 VGSIVDAATA-ALYIQLGANFIVTPLF-----NPDIAKVCNRRKVPYS 116 (222)
T ss_pred eEeCcCHHHH-HHHHHcCCCEEECCCC-----CHHHHHHHHHcCCCEe
Confidence 3467788776 6677899996 67887 8999999999998875
No 236
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=29.48 E-value=1.9e+02 Score=22.08 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEeC
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FIG 95 (103)
.+.....++++.++.|.|++- |-= |--....+.+.+++.++.|++
T Consensus 69 ~~~~g~~~~~~l~~~g~da~~-GNHefd~g~~~l~~~~~~~~~~~l~ 114 (264)
T cd07411 69 LYTRGQAMVDALNALGVDAMV-GHWEFTYGPERVRELFGRLNWPFLA 114 (264)
T ss_pred hhcCChhHHHHHHhhCCeEEe-cccccccCHHHHHHHHhhCCCCEEE
Confidence 345667899999999999998 643 333456677788888877765
No 237
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.41 E-value=1.2e+02 Score=22.65 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHcCCceecCCCc----cCC-----CCHHHHHHHHhCCCeEeC
Q psy6380 53 NNPEIICIANNINVDAIHPGYG----FLS-----EREDFAKAVIGAALEFIG 95 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYG----FLS-----En~~Fa~~~~~~gi~FIG 95 (103)
+.+..++.+++.|.+.|=...+ |.. .-..+.+++++.||...+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE
Confidence 5889999999999998654322 211 124577788899998754
No 238
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=29.40 E-value=52 Score=22.29 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=13.5
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.||+||.
T Consensus 62 ~~~L~~~A~~~GAnAVI 78 (105)
T PF01906_consen 62 LERLKEEAKELGANAVI 78 (105)
T ss_dssp HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHhhCCCCEEE
Confidence 57888999999999964
No 239
>PRK01217 hypothetical protein; Provisional
Probab=29.28 E-value=51 Score=23.33 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=15.3
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++++-|++.||+||.
T Consensus 69 ~~rm~~~A~~lGAnAVV 85 (114)
T PRK01217 69 LERMIDHAKELGANAVI 85 (114)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 68899999999999985
No 240
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.18 E-value=1e+02 Score=21.63 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCC----------CHHHHHHHHhCCCeEeC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSE----------REDFAKAVIGAALEFIG 95 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSE----------n~~Fa~~~~~~gi~FIG 95 (103)
-+++.|++.+++.++..|.-+.-.+.+ |..+.+.+.+.++.||=
T Consensus 95 ~~l~~lv~~~~~~~~~vili~~pp~~~~~~~~~~~~~~~~~~~~a~~~~~~~id 148 (200)
T cd01829 95 QRIDELLNVARAKGVPVIWVGLPAMRSPKLSADMVYLNSLYREEVAKAGGEFVD 148 (200)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCCChhHhHHHHHHHHHHHHHHHHcCCEEEE
Confidence 456788888888899988766544432 33455666778888874
No 241
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=29.15 E-value=40 Score=27.70 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHcCCcee
Q psy6380 53 NNPEIICIANNINVDAI 69 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daI 69 (103)
..-++|++|++.|||||
T Consensus 17 ~A~~lI~~A~~aGadaV 33 (329)
T TIGR03569 17 LAKKLVDAAAEAGADAV 33 (329)
T ss_pred HHHHHHHHHHHhCCCEE
Confidence 35689999999999986
No 242
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=29.00 E-value=2.7e+02 Score=21.51 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=34.8
Q ss_pred CCCCChHHHHHHHHHcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeC
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGY-GFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIG 95 (103)
.++...+.++++.++.|.|++-+|= -|=-.-..|.+.+...++.|++
T Consensus 66 ~~~~~g~~~~~~ln~~g~D~~~lGNHefd~G~~~l~~~~~~~~~p~l~ 113 (281)
T cd07409 66 YTLYKGNADAEFMNLLGYDAMTLGNHEFDDGVEGLAPFLNNLKFPVLS 113 (281)
T ss_pred hhhcCChHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhCCCCEEE
Confidence 3455678899999999999988773 2444556677777777777776
No 243
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=28.97 E-value=62 Score=26.43 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=32.1
Q ss_pred cCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhh
Q psy6380 64 INVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVL 101 (103)
Q Consensus 64 ~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m 101 (103)
.+.|.|+|-. |...||-..+..++..||-++|++..++
T Consensus 86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~as 124 (364)
T PRK14570 86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGS 124 (364)
T ss_pred cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHH
Confidence 4689888765 4678999999999999999999997665
No 244
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=28.91 E-value=49 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred cCCceecCCCccC---------CCCHHHHHHHHhCCCeEe
Q psy6380 64 INVDAIHPGYGFL---------SEREDFAKAVIGAALEFI 94 (103)
Q Consensus 64 ~g~daIHPGYGFL---------SEn~~Fa~~~~~~gi~FI 94 (103)
..+++|||.|.++ ..++++.+++.++|+.+.
T Consensus 231 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~ 270 (309)
T cd08602 231 TYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVH 270 (309)
T ss_pred hhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEE
Confidence 4788999988766 457899999999999764
No 245
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=28.83 E-value=57 Score=26.03 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=31.1
Q ss_pred CCC-CChHH----HHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAY-LNNPE----IICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sY-lni~~----Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+| .+.+. ..+..++.||++|+--=| .|..+..+++.++||-++
T Consensus 86 g~y~~~~~~av~~a~r~~~~aGa~aVkiEdg--~~~~~~I~al~~agIpV~ 134 (264)
T PRK00311 86 GSYQASPEQALRNAGRLMKEAGAHAVKLEGG--EEVAETIKRLVERGIPVM 134 (264)
T ss_pred CCccCCHHHHHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHHHCCCCEe
Confidence 567 45544 566667799999987444 466677788888897764
No 246
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=28.82 E-value=94 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=28.1
Q ss_pred HHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 58 ICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
-++..+.++++|. |+..-+.....++.++++||.+|.|.+
T Consensus 58 ~~lv~~~~v~~vi-G~~~s~~~~a~~~~~~~~~ip~i~~~~ 97 (333)
T cd06359 58 ERLIKRDKVDFVT-GVVFSNVLLAVVPPVLESGTFYISTNA 97 (333)
T ss_pred HHHHhhcCCcEEE-ccCCcHHHHHHHHHHHHcCCeEEecCC
Confidence 3344556899888 554445566677788999999998754
No 247
>PRK00967 hypothetical protein; Provisional
Probab=28.81 E-value=54 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=15.2
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.|||||.
T Consensus 62 ~~rm~~~A~~~GAnAII 78 (105)
T PRK00967 62 IDRMKEEAKQKGANAIV 78 (105)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 67899999999999975
No 248
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=28.63 E-value=93 Score=25.19 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHcC-cEEEEeecccccccccce-----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLWL-----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~~-----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|++.+.+..++. +...+ ....+..++-+++++++.+++.++|.|.
T Consensus 18 ~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 85 (375)
T cd08194 18 LADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVII 85 (375)
T ss_pred HHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 34466 788889987654332211 11111 1224456788899999999999999875
No 249
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=28.57 E-value=90 Score=23.49 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=34.8
Q ss_pred hHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEeCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FIGP~ 97 (103)
.++|+++.++.|+.|-+.=-| .+.++++..+++.++|.. ||-.
T Consensus 52 t~~lL~~L~~~~vkATFFv~G~~~~~~p~~ir~i~~~Ghe-IgnH 95 (224)
T TIGR02884 52 TPKILDVLKEKKVPAAFFVTGHYIKTQPDLIKRMVDEGHI-VGNH 95 (224)
T ss_pred hHHHHHHHHHcCCCeEEEeechhhHHCHHHHHHHHHcCCE-eeec
Confidence 468999999999998776556 567799999999999965 6643
No 250
>PRK12856 hypothetical protein; Provisional
Probab=28.55 E-value=54 Score=22.88 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=15.1
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.||+||.
T Consensus 62 ~~rm~~~A~~lGAnAVv 78 (103)
T PRK12856 62 MDEMKELAKQKGANAIV 78 (103)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 67889999999999975
No 251
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=28.47 E-value=95 Score=22.25 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCeE
Q psy6380 54 NPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~F 93 (103)
.+.|+++.++.|+.|-+.=.| ++.++|+..+++.++|..+
T Consensus 21 t~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i~~~Ghei 61 (191)
T TIGR02764 21 TEPILDTLKEYDVKATFFLSGSWAERHPELVKEIVKDGHEI 61 (191)
T ss_pred HHHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHHHhCCCEE
Confidence 578999999999998666555 5668899999999999754
No 252
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.46 E-value=95 Score=24.44 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHcCCceec-CCCccCCCCHHHHHHHHhCCCe--EeCC
Q psy6380 52 LNNPEIICIANNINVDAIH-PGYGFLSEREDFAKAVIGAALE--FIGP 96 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIH-PGYGFLSEn~~Fa~~~~~~gi~--FIGP 96 (103)
.|...++..++..++|+|. .+++ .+...|.+.+.+.|+. |+|.
T Consensus 182 ~D~~~~v~~i~~~~pd~V~~~~~~--~~~~~~~~~~~~~G~~~~~~~~ 227 (351)
T cd06334 182 NDQKAQWLQIRRSGPDYVILWGWG--VMNPVAIKEAKRVGLDDKFIGN 227 (351)
T ss_pred ccHHHHHHHHHHcCCCEEEEeccc--chHHHHHHHHHHcCCCceEEEe
Confidence 4778889999999999985 3444 5778899999888774 6654
No 253
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=28.38 E-value=1.1e+02 Score=23.44 Aligned_cols=39 Identities=8% Similarity=-0.067 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..+..++..+++.+++.+..+--+++|.+.+.+.|+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~ 262 (290)
T cd08607 224 IAVNFAQAEELLGVNLHSEDLLKDPSQIELAKSLGLVVF 262 (290)
T ss_pred HHHHHHHHcCCceeEechhhhhcChHHHHHHHHcCCEEE
Confidence 455677778887776665555568899999999998764
No 254
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=28.37 E-value=1e+02 Score=26.36 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=31.5
Q ss_pred cEEEEeecccccccccceecccCCCCCCC--CCCCChHHHHHHHHHcCCceecC
Q psy6380 20 TTIIILSKRKLEDSSLWLLRDQGKRMPPV--AAYLNNPEIICIANNINVDAIHP 71 (103)
Q Consensus 20 ~tvai~t~~dl~~a~~~~~AD~~~~~~~~--~sYlni~~Ii~~A~~~g~daIHP 71 (103)
..+.|+||+| -+-.+|--.= +++ =.+++.+..+++|. .|+..+||
T Consensus 213 d~~~I~TDVd-----GI~TaDPRiV-p~Ar~i~~isyeEa~ELA~-~GAkVLHp 259 (447)
T COG0527 213 DEVEIWTDVD-----GVYTADPRIV-PDARLLPEISYEEALELAY-LGAKVLHP 259 (447)
T ss_pred CEEEEEECCC-----CCccCCCCCC-CcceEcCccCHHHHHHHHH-CCchhcCH
Confidence 6688999988 1222332111 222 37999999999998 89999997
No 255
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=28.30 E-value=49 Score=26.59 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCCChHHHHHHHHHcCCceecCCC
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGY 73 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGY 73 (103)
.--|.+.|+++|++.|+.-|.|+.
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHI 210 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHV 210 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeecccc
Confidence 345789999999999999999985
No 256
>PRK09875 putative hydrolase; Provisional
Probab=28.07 E-value=1.2e+02 Score=24.46 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCcee
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAI 69 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daI 69 (103)
..+|+.| +||+=.|..++ =-|++.+.++++++|++.|
T Consensus 41 ~~~~~~Gg~tiVd~T~~g~--------------------GRd~~~l~~is~~tgv~Iv 78 (292)
T PRK09875 41 NDLMTRGVRNVIEMTNRYM--------------------GRNAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHhCCCeEEecCCCcc--------------------CcCHHHHHHHHHHhCCcEE
Confidence 3466777 88876666553 2248889999999998755
No 257
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=28.03 E-value=71 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.8
Q ss_pred ccCCCCC-CCCCCCChHHHHHHHHHcCCcee
Q psy6380 40 DQGKRMP-PVAAYLNNPEIICIANNINVDAI 69 (103)
Q Consensus 40 D~~~~~~-~~~sYlni~~Ii~~A~~~g~daI 69 (103)
||+...+ +..-|.|++.+++.+-+.|+|+|
T Consensus 30 DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav 60 (265)
T COG1830 30 DHGVEHGNPIEGLEDPENIVAKVAEAGADAV 60 (265)
T ss_pred ccccccCCCcccccCHHHHHHHHHhcCCCEE
Confidence 6665544 66789999999999999999985
No 258
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=28.01 E-value=68 Score=24.86 Aligned_cols=51 Identities=22% Similarity=0.198 Sum_probs=25.6
Q ss_pred cchHH--------HHHcCcEEEEeeccccccccccee-ccc---CCCCCCCCCCCChHHHHHH
Q psy6380 10 DNYDS--------LIQAGTTIIILSKRKLEDSSLWLL-RDQ---GKRMPPVAAYLNNPEIICI 60 (103)
Q Consensus 10 ~~~~~--------~~~~g~tvai~t~~dl~~a~~~~~-AD~---~~~~~~~~sYlni~~Ii~~ 60 (103)
||||| |++.|..|.|+-..++....+-.+ .|. +|+++.++.+=..-.+|+.
T Consensus 8 DNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~ 70 (191)
T COG0512 8 DNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRR 70 (191)
T ss_pred ECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHH
Confidence 78876 688995566555544222222222 232 4555455544434444444
No 259
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.86 E-value=1.4e+02 Score=21.41 Aligned_cols=41 Identities=20% Similarity=0.043 Sum_probs=29.8
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
....++-+...|+|+|.-.-..-++-..+.+.+.++||-.|
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv 84 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVV 84 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEE
Confidence 45566677778899888666556666778888888888544
No 260
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=27.73 E-value=47 Score=25.40 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred cCCcchHHHHHcC--cEEEEeecccccccccceeccc----CCC----CCCCCCCCChHHHHHHHHHcCCc
Q psy6380 7 PCKDNYDSLIQAG--TTIIILSKRKLEDSSLWLLRDQ----GKR----MPPVAAYLNNPEIICIANNINVD 67 (103)
Q Consensus 7 ~~~~~~~~~~~~g--~tvai~t~~dl~~a~~~~~AD~----~~~----~~~~~sYlni~~Ii~~A~~~g~d 67 (103)
.+-++|+.|.+.. --|.|.|+.+ .|..++-. +.. -|-..+.-+.+.|+++|++.|..
T Consensus 54 ~~~~~~~~ll~~~~iD~V~Iatp~~----~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 54 KAYTDLEELLADPDIDAVYIATPNA----LHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred cccCCHHHHhcCCCCCEEEEcCCCh----hhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 4667899999988 6888888876 33333321 211 15567889999999999999854
No 261
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=27.61 E-value=83 Score=25.65 Aligned_cols=25 Identities=8% Similarity=-0.145 Sum_probs=21.2
Q ss_pred CCCCCCCChHHHHHHHHHc---CCceec
Q psy6380 46 PPVAAYLNNPEIICIANNI---NVDAIH 70 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~---g~daIH 70 (103)
.+..++-+++++++.+++. ++|.|.
T Consensus 59 ~~nPt~~~v~~~~~~~~~~~~~~~D~II 86 (347)
T cd08184 59 TEEPKTDQIDALTAQVKSFDGKLPCAIV 86 (347)
T ss_pred CCCcCHHHHHHHHHHHHhhCCCCCCEEE
Confidence 4566788899999999988 999876
No 262
>PRK15447 putative protease; Provisional
Probab=27.51 E-value=1.1e+02 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHcCCceecCCCcc
Q psy6380 53 NNPEIICIANNINVDAIHPGYGF 75 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGF 75 (103)
+++....+..+.|||+|+-|-.+
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~ 38 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETV 38 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCcc
Confidence 36667777777888888888554
No 263
>PRK11263 cardiolipin synthase 2; Provisional
Probab=27.50 E-value=1.3e+02 Score=25.27 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=30.0
Q ss_pred hHHHHHHHHHcCCc--eecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVD--AIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~d--aIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+.|+++|+ .||+ .+..|+|-..-+..|.+.+.++|+.+.
T Consensus 51 ~~aL~~aa~-rGV~Vril~D~~gs~~~~~~~~~~L~~aGv~v~ 92 (411)
T PRK11263 51 HAALLAAAQ-RGVKVEVLVDGYGSPDLSDEFVNELTAAGVRFR 92 (411)
T ss_pred HHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHCCeEEE
Confidence 345555555 7886 588999966667889999999998864
No 264
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=27.42 E-value=1.8e+02 Score=20.97 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH---hCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI---GAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~---~~gi~FI 94 (103)
.++.+.++.|.+.|++.|.--||.-.++..+.+.++ +.|++++
T Consensus 83 ~~l~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~a~~~giliv 128 (229)
T cd07477 83 SDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIKKAYAAGILVV 128 (229)
T ss_pred HHHHHHHHHHHHCCCCEEEECCccCCCCHHHHHHHHHHHHCCCEEE
Confidence 345666778889999999999999888887777664 4688775
No 265
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=27.40 E-value=34 Score=26.31 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.2
Q ss_pred CCcchHHHHHcCcEEEEeeccc
Q psy6380 8 CKDNYDSLIQAGTTIIILSKRK 29 (103)
Q Consensus 8 ~~~~~~~~~~~g~tvai~t~~d 29 (103)
-.++|..|++.|+.|.|||++=
T Consensus 138 ~~~~~~~~~~~~~~~c~VSpEL 159 (192)
T cd08584 138 DNDLILKLLKAGKKICLVSPEL 159 (192)
T ss_pred CHHHHHHHHHCCcEEEEECHHH
Confidence 4578999999999999999963
No 266
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=27.30 E-value=1.1e+02 Score=23.29 Aligned_cols=42 Identities=10% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCChHHHHHHHHHcCCc--eecCCCc-cCCCCHHHHHHHHhCCC
Q psy6380 50 AYLNNPEIICIANNINVD--AIHPGYG-FLSEREDFAKAVIGAAL 91 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~d--aIHPGYG-FLSEn~~Fa~~~~~~gi 91 (103)
.+++.+..++++++.+.+ .|=-|++ |+++-+++.+.+.+.|.
T Consensus 10 D~~~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~~~ 54 (230)
T PRK00230 10 DFPSKEEALAFLDQLDPAVLFVKVGMELFTAGGPQFVRELKQRGF 54 (230)
T ss_pred CCCCHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHHHHHHHhcCC
Confidence 477889999999998855 4556777 88899999999988753
No 267
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.28 E-value=56 Score=26.40 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
..|.+.+...++++++|+|++=+.+|
T Consensus 150 ~~~T~pe~a~~Fv~~TgvD~LAvaiG 175 (283)
T PRK07998 150 DCKTEPEKVKDFVERTGCDMLAVSIG 175 (283)
T ss_pred cccCCHHHHHHHHHHhCcCeeehhcc
Confidence 45999999999999999999877775
No 268
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=27.28 E-value=1e+02 Score=25.11 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHcCcEEEEeecccccccccce-----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAGTTIIILSKRKLEDSSLWL-----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g~tvai~t~~dl~~a~~~~-----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.|+.+-|+|+..+.+..++. +...+ ....+.++..++.++++.+++.++|.|.
T Consensus 18 ~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~II 84 (386)
T cd08191 18 AARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVII 84 (386)
T ss_pred HHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 45568778888887653322221 11111 1223345677799999999999999865
No 269
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.22 E-value=1.1e+02 Score=25.06 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHcCCcee-cCCCc----cCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAI-HPGYG----FLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daI-HPGYG----FLSEn~~Fa~~~~~~gi~FI 94 (103)
..+.|.+++++.+||+| |-..- +.-|.+.+.+.+++.||-++
T Consensus 301 R~~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L 347 (377)
T TIGR03190 301 RYDHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTL 347 (377)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEE
Confidence 47889999999999985 22222 35688999999999998664
No 270
>PRK08609 hypothetical protein; Provisional
Probab=27.20 E-value=1.2e+02 Score=26.54 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCC-eEeCCChhh
Q psy6380 52 LNNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAAL-EFIGPTTNV 100 (103)
Q Consensus 52 lni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi-~FIGP~~~~ 100 (103)
.++++|+++|+++|+-. |.-+.-++.-+..+.+.+.+.|+ .+||..+..
T Consensus 479 ~d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~ 529 (570)
T PRK08609 479 VNIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHH 529 (570)
T ss_pred HHHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCC
Confidence 45789999999998765 55554455667889999988875 456766543
No 271
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=27.18 E-value=1.1e+02 Score=22.72 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHHHcC--CceecCCCc-cCCCCHHHHHHHHhCCC
Q psy6380 50 AYLNNPEIICIANNIN--VDAIHPGYG-FLSEREDFAKAVIGAAL 91 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g--~daIHPGYG-FLSEn~~Fa~~~~~~gi 91 (103)
.+.+.+..++++++.+ ++.|=+|+- |.++-+++.+.+.+.+.
T Consensus 6 D~~~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~~v~~l~~~~~ 50 (213)
T TIGR01740 6 DVTTKDEALDLADSLGPEIEVIKVGIDLLLDGGDKIIDELAKLNK 50 (213)
T ss_pred CCCCHHHHHHHHHhcCCcCcEEEECHHHHHhcCHHHHHHHHHcCC
Confidence 4678899999999999 888788987 68888999999988663
No 272
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=27.14 E-value=2.6e+02 Score=20.71 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=11.5
Q ss_pred HHHcCcEEEEeeccc
Q psy6380 15 LIQAGTTIIILSKRK 29 (103)
Q Consensus 15 ~~~~g~tvai~t~~d 29 (103)
..++|+.|++++..|
T Consensus 86 ~~~~g~~Vv~l~~GD 100 (230)
T TIGR01467 86 ELEEGRDVAFLTLGD 100 (230)
T ss_pred HHHCCCcEEEEeCCC
Confidence 345688899998877
No 273
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.09 E-value=72 Score=25.24 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
....+.+.+.++.+..|||+|.-|-|+++ ||.+.+.+.
T Consensus 199 GgI~~~~da~~~l~~~gad~VmigR~~l~-~P~l~~~~~ 236 (319)
T TIGR00737 199 GDIFSPEDAKAMLETTGCDGVMIGRGALG-NPWLFRQIE 236 (319)
T ss_pred CCCCCHHHHHHHHHhhCCCEEEEChhhhh-CChHHHHHH
Confidence 44566777777777899999999999997 777766653
No 274
>PRK09989 hypothetical protein; Provisional
Probab=27.04 E-value=1.6e+02 Score=22.10 Aligned_cols=42 Identities=14% Similarity=-0.080 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHcCCceec-CCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 53 NNPEIICIANNINVDAIH-PGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIH-PGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
+.+..++.+++.|-|+|= .++.-+ .-.++.+.++++||...+
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~-~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDY-STLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccC-CHHHHHHHHHHcCCcEEE
Confidence 567888888888888874 232212 235677778888877663
No 275
>PRK11579 putative oxidoreductase; Provisional
Probab=26.95 E-value=61 Score=25.61 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=40.8
Q ss_pred CCCccCCcchHHHHHcC--cEEEEeecccccccccceec-ccCCC----CCCCCCCCChHHHHHHHHHcCCce
Q psy6380 3 FPTYPCKDNYDSLIQAG--TTIIILSKRKLEDSSLWLLR-DQGKR----MPPVAAYLNNPEIICIANNINVDA 68 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~g--~tvai~t~~dl~~a~~~~~A-D~~~~----~~~~~sYlni~~Ii~~A~~~g~da 68 (103)
|+..++-++|+.|.+.. --|.|.|+..+ -..++..| ..+.. -|-..+.-+.++|+++|++.|+..
T Consensus 47 ~~~~~~~~~~~ell~~~~vD~V~I~tp~~~-H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 47 WPTVTVVSEPQHLFNDPNIDLIVIPTPNDT-HFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred CCCCceeCCHHHHhcCCCCCEEEEcCCcHH-HHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 34445567899998765 77888888762 12222222 22211 144456777899999999999763
No 276
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=26.70 E-value=3.1e+02 Score=21.60 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHH---cCCce---ecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANN---INVDA---IHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~---~g~da---IHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+|.+.+.+...+ .+..+ +|+ +|...+-.++++.|+++|+.+|
T Consensus 104 ~~d~~~l~~~i~~~~~~~t~~v~~~~~-~G~~~~~~~i~~l~~~~~~~lI 152 (380)
T TIGR03588 104 NIDEDALEKKLAAAKGKLPKAIVPVDF-AGKSVDMQAIAALAKKHGLKII 152 (380)
T ss_pred CcCHHHHHHHhhcccCCCceEEEEeCC-CCccCCHHHHHHHHHHcCCEEE
Confidence 3566666655542 22333 343 4666666777777777777654
No 277
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=26.67 E-value=1.3e+02 Score=22.92 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
-|...++.-+++.++|+|.-+ |.-.+...|.+.+.+.|+.
T Consensus 174 ~d~~~~v~~~~~~~~d~v~~~-~~~~~~~~~~~~~~~~g~~ 213 (333)
T cd06331 174 SDFGSVIEKIKAAGPDVVLST-LVGDSNVAFYRQFAAAGLD 213 (333)
T ss_pred ccHHHHHHHHHHcCCCEEEEe-cCCCChHHHHHHHHHcCCC
Confidence 567888888999999998743 3446778899999988875
No 278
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.60 E-value=1.1e+02 Score=22.10 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=20.3
Q ss_pred hHHHHHHHHHcCCceecCC-CccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNINVDAIHPG-YGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPG-YGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
+.++++.+++.|...+- + .+. .+..+-++.+.+.|+.+++-
T Consensus 91 ~~~~i~~~~~~g~~~~~-~~~~~-~t~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQV-DLINV-KDKVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHHHHHcCCEEEE-EecCC-CChHHHHHHHHHcCCCEEEE
Confidence 46677777777755431 1 111 22234444445556666553
No 279
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.51 E-value=46 Score=28.12 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.2
Q ss_pred CCCChHHHHHHHHHcCCcee
Q psy6380 50 AYLNNPEIICIANNINVDAI 69 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daI 69 (103)
+.--.-.+|++|+++|||+|
T Consensus 28 ~le~A~~lIdaAk~aGADav 47 (347)
T COG2089 28 DLERAKELIDAAKEAGADAV 47 (347)
T ss_pred cHHHHHHHHHHHHHcCccee
Confidence 44446689999999999985
No 280
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=26.50 E-value=49 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=16.7
Q ss_pred CCCChHHHHHHHHHcCCceecCCC
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGY 73 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGY 73 (103)
.--|.+.|+++|++.|+.-|.|+.
T Consensus 187 dl~N~~~I~~i~l~aGv~~viPHi 210 (218)
T PF07071_consen 187 DLDNFEEIVKICLDAGVEKVIPHI 210 (218)
T ss_dssp -TTTHHHHHHHHHHTT-S-B--EE
T ss_pred CHHHHHHHHHHHHHcCCCeeccch
Confidence 355799999999999999999874
No 281
>PRK11059 regulatory protein CsrD; Provisional
Probab=26.29 E-value=95 Score=26.72 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+..=+..|+++|+..|++.|-.|- |+.+-.+.+.+.|+.++
T Consensus 587 ~~~~~v~sli~~a~~~~i~viAegV----Et~~~~~~l~~lGvd~~ 628 (640)
T PRK11059 587 ENQLFVRSLVGACAGTETQVFATGV----ESREEWQTLQELGVSGG 628 (640)
T ss_pred hhHHHHHHHHHHHHHCCCeEEEEEe----CCHHHHHHHHHhCCCee
Confidence 3444578899999999999999999 99999999999998654
No 282
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=26.22 E-value=56 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.1
Q ss_pred HHHHHHHHcCCceecCCCccCCCC
Q psy6380 56 EIICIANNINVDAIHPGYGFLSER 79 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn 79 (103)
.=+++|++.|+.+|+-.||+-+.+
T Consensus 169 ~d~~aa~~aG~~~i~v~~g~~~~~ 192 (213)
T TIGR01449 169 VDIQAARAAGCPSVLLTYGYRYGE 192 (213)
T ss_pred HHHHHHHHCCCeEEEEccCCCCCc
Confidence 335678888999998888876554
No 283
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=26.18 E-value=43 Score=23.99 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=16.6
Q ss_pred HHHHHHcCCceecCCCccCCC
Q psy6380 58 ICIANNINVDAIHPGYGFLSE 78 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFLSE 78 (103)
+++|++.|+++|..-||+-+.
T Consensus 161 i~aA~~~Gi~~i~~~~g~~~~ 181 (205)
T TIGR01454 161 LASARAAGTATVAALWGEGDA 181 (205)
T ss_pred HHHHHHcCCeEEEEEecCCCh
Confidence 577888888888888888554
No 284
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=26.18 E-value=2.2e+02 Score=20.01 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=31.8
Q ss_pred CCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH--hCCCeEeCCChhh
Q psy6380 47 PVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI--GAALEFIGPTTNV 100 (103)
Q Consensus 47 ~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~--~~gi~FIGP~~~~ 100 (103)
..+..+|.+.|++..++.|.+.|.|+ .+| |.+++. ..==.+|||..+.
T Consensus 114 ~~R~i~Ne~el~~~l~~~~~~~v~~~--~~s----~~eqv~~~~~a~viig~hGs~ 163 (206)
T PF04577_consen 114 GSRRILNEDELLEILKKYGFEVVDPE--DLS----FEEQVKLFASAKVIIGPHGSA 163 (206)
T ss_pred CCCcCcCHHHHHHHHhhCCeEEEeCC--CCC----HHHHHHHhcCCCEEEecCchH
Confidence 35678999999999999999999966 233 555553 1223345555443
No 285
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=61 Score=23.11 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=15.4
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.|||||.
T Consensus 62 l~rm~~~A~~lGAnAVV 78 (108)
T COG0393 62 LERMVDEAEALGANAVV 78 (108)
T ss_pred HHHHHHHHHHhCCCeEE
Confidence 78899999999999975
No 286
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=26.05 E-value=18 Score=29.68 Aligned_cols=26 Identities=31% Similarity=0.732 Sum_probs=22.4
Q ss_pred CCCCCChHHHHHHHHHcCCceecCCCcc
Q psy6380 48 VAAYLNNPEIICIANNINVDAIHPGYGF 75 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daIHPGYGF 75 (103)
.=||+|.|.|++..|.....| |||.|
T Consensus 64 sFSfIn~dqlVq~lr~Ia~nA--~gyAF 89 (361)
T PF06122_consen 64 SFSFINSDQLVQMLRNIASNA--PGYAF 89 (361)
T ss_pred ccccCCHHHHHHHHHHHHHhh--HHHHH
Confidence 458999999999999998777 58877
No 287
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.98 E-value=94 Score=23.72 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=40.5
Q ss_pred HHHHHcC-cEEEEeecccccccccce-ecccCCCC-CCCCCCCChHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHh
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWL-LRDQGKRM-PPVAAYLNNPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~-~AD~~~~~-~~~~sYlni~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~ 88 (103)
.+|.+.| +.+-|..... .-...++ +..+.+.+ -..-+-++.+. ++.|.+.||+. |=||+ |++..+.|.+
T Consensus 27 ~al~~gGi~~iEiT~~t~-~a~~~I~~l~~~~p~~~vGAGTV~~~e~-a~~a~~aGA~FivSP~~-----~~~v~~~~~~ 99 (196)
T PF01081_consen 27 EALIEGGIRAIEITLRTP-NALEAIEALRKEFPDLLVGAGTVLTAEQ-AEAAIAAGAQFIVSPGF-----DPEVIEYARE 99 (196)
T ss_dssp HHHHHTT--EEEEETTST-THHHHHHHHHHHHTTSEEEEES--SHHH-HHHHHHHT-SEEEESS-------HHHHHHHHH
T ss_pred HHHHHCCCCEEEEecCCc-cHHHHHHHHHHHCCCCeeEEEeccCHHH-HHHHHHcCCCEEECCCC-----CHHHHHHHHH
Confidence 5677778 6655554433 1111121 22222211 11345667775 45666799996 66876 8999999999
Q ss_pred CCCeEe
Q psy6380 89 AALEFI 94 (103)
Q Consensus 89 ~gi~FI 94 (103)
+|+.++
T Consensus 100 ~~i~~i 105 (196)
T PF01081_consen 100 YGIPYI 105 (196)
T ss_dssp HTSEEE
T ss_pred cCCccc
Confidence 999886
No 288
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=25.92 E-value=1.7e+02 Score=22.77 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
..+++..+..|++.|.-..|. +....+.|.++||..+.
T Consensus 120 ~~~v~kI~~~g~nvIl~~k~I---~~~a~~~l~k~gI~~v~ 157 (261)
T cd03334 120 KNLVSRIVALRPDVILVEKSV---SRIAQDLLLEAGITLVL 157 (261)
T ss_pred HHHHHHHHhcCCCEEEECCcc---CHHHHHHHHHCCCEEEE
Confidence 345667788999999999987 55566788999987653
No 289
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.92 E-value=1.1e+02 Score=23.87 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.|...+++-.+..|+|+|. ..++-++-..|.+.+.+.|+.
T Consensus 190 ~D~~~~v~~ik~a~pD~v~-~~~~~~~~~~~~~~~~~~G~~ 229 (357)
T cd06337 190 DDFSSQINAFKREGVDIVT-GFAIPPDFATFWRQAAQAGFK 229 (357)
T ss_pred CcHHHHHHHHHhcCCCEEE-eCCCccHHHHHHHHHHHCCCC
Confidence 5678888888999999986 445555667788888887764
No 290
>PLN02334 ribulose-phosphate 3-epimerase
Probab=25.84 E-value=1.2e+02 Score=22.69 Aligned_cols=39 Identities=5% Similarity=0.002 Sum_probs=24.8
Q ss_pred hHHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHHhCCCe
Q psy6380 54 NPEIICIANNINVDAI--HPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.+..++.+.+.|||.| |-|--.-..-..+.+.+.+.|+.
T Consensus 77 p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~ 117 (229)
T PLN02334 77 PEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMK 117 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCe
Confidence 4667788899999999 66520112223566777777763
No 291
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=25.81 E-value=1.1e+02 Score=23.48 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi 91 (103)
-|....++..+..++|+|.-+ ++-.+...|.+.+.+.|+
T Consensus 174 ~d~~~~v~~l~~~~pd~v~~~-~~~~~~~~~~~~~~~~G~ 212 (334)
T cd06356 174 SDFGSTIQKIQAAKPDFVMSI-LVGANHLSFYRQWAAAGL 212 (334)
T ss_pred hhHHHHHHHHHhcCCCEEEEe-ccCCcHHHHHHHHHHcCC
Confidence 468889999999999999853 345577889999999988
No 292
>smart00642 Aamy Alpha-amylase domain.
Probab=25.77 E-value=46 Score=24.24 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=16.6
Q ss_pred ecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 69 IHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 69 IHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
|.|-||=..|=.+|.++|.++||..|
T Consensus 62 i~~~~Gt~~d~~~lv~~~h~~Gi~vi 87 (166)
T smart00642 62 IDPRFGTMEDFKELVDAAHARGIKVI 87 (166)
T ss_pred CCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 45556656666666677777777654
No 293
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=25.77 E-value=36 Score=21.65 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=22.7
Q ss_pred ccCCCCHHHHHHHHhCCCeEeCCChhh
Q psy6380 74 GFLSEREDFAKAVIGAALEFIGPTTNV 100 (103)
Q Consensus 74 GFLSEn~~Fa~~~~~~gi~FIGP~~~~ 100 (103)
+||-+||+.-+.+.+.....||=+...
T Consensus 7 ~YLv~nPevl~kl~~g~asLIGv~~~e 33 (57)
T PF05952_consen 7 NYLVQNPEVLEKLKEGEASLIGVDKDE 33 (57)
T ss_pred HHHHHChHHHHHHHcCCeeEecCCHHH
Confidence 478899999999999999999876543
No 294
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=25.73 E-value=88 Score=24.81 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.0
Q ss_pred cCCceecCCCc--------cCCCCHHHHHHHHhCCCeEe
Q psy6380 64 INVDAIHPGYG--------FLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 64 ~g~daIHPGYG--------FLSEn~~Fa~~~~~~gi~FI 94 (103)
..|++|||.+. ++.++.+|.+.+.++|+.+.
T Consensus 216 ~~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~ 254 (300)
T cd08604 216 KFADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVY 254 (300)
T ss_pred HhccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEE
Confidence 45778888774 45667899999999998764
No 295
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.63 E-value=1.1e+02 Score=22.81 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=29.6
Q ss_pred CCChHHHHHHHHHcCCceecC-CC---------cc-CCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHP-GY---------GF-LSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHP-GY---------GF-LSEn~~Fa~~~~~~gi~FI 94 (103)
.+..+..++.+++.|.|.|=- .. ++ ..+-.++.+.+.+.||...
T Consensus 15 ~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 15 HLSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 467899999999999988621 11 11 1123567888899998753
No 296
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=25.59 E-value=1.4e+02 Score=23.61 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=38.5
Q ss_pred CcchHHHHHcC-cEEEEeecccccccccce-----ecc--c---CCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 9 KDNYDSLIQAG-TTIIILSKRKLEDSSLWL-----LRD--Q---GKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 9 ~~~~~~~~~~g-~tvai~t~~dl~~a~~~~-----~AD--~---~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
++-...|++.+ +.+.|+|++-+.+..+.. +.+ + .....+..++-+++++++.+++.++|+|.
T Consensus 11 ~g~~~~l~~~~~~~~lvv~~~~~~~~g~~~~v~~~l~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~Ii 83 (332)
T cd08180 11 EDALERLKELKNKRVLIVTDPFMVKSGMLDKVTDHLDSSIEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVI 83 (332)
T ss_pred cCHHHHHHHhCCCeEEEEeCchhhhCccHHHHHHHHHhcCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 34455666664 888888887553321110 101 0 01223445788899999999999999987
No 297
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=25.44 E-value=1.1e+02 Score=24.06 Aligned_cols=43 Identities=30% Similarity=0.400 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEeCC
Q psy6380 53 NNPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FIGP 96 (103)
...+|+++-++.|+.|-+.=.| .+.+++++.+++.++|.. ||-
T Consensus 99 ~t~~iL~iLkk~~vkATFFv~G~~i~~~p~l~k~i~~~Ghe-IGn 142 (268)
T TIGR02873 99 YLPEILQILKKHDVKATFFLEGKWVKENSQLAKMIVEQGHE-IGN 142 (268)
T ss_pred hHHHHHHHHHHCCCCEEEEeehHhhhHCHHHHHHHHHCCCE-EEe
Confidence 3579999999999999777667 677899999999999964 553
No 298
>PRK12677 xylose isomerase; Provisional
Probab=25.40 E-value=2.3e+02 Score=23.50 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=36.4
Q ss_pred CCCCCCCChHHHHHHHHHcCCceecCC----CccCC---C----CHHHHHHHHhCCCeEe
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAIHPG----YGFLS---E----REDFAKAVIGAALEFI 94 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daIHPG----YGFLS---E----n~~Fa~~~~~~gi~FI 94 (103)
++.++=++.+.+++.+.+.|.++|=.. +-|-+ | -..+.+.+++.||...
T Consensus 25 ~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 25 DATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 455778899999999999999987555 32322 2 2477888899999954
No 299
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=25.33 E-value=94 Score=22.21 Aligned_cols=22 Identities=9% Similarity=-0.126 Sum_probs=17.3
Q ss_pred HHHHHHcCCceecCCCccCCCC
Q psy6380 58 ICIANNINVDAIHPGYGFLSER 79 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFLSEn 79 (103)
+.+|++.|+++|+-.+|+-+++
T Consensus 122 i~aA~~aGi~~i~v~~g~~~~~ 143 (170)
T TIGR01668 122 VMGGNRNGSYTILVEPLVHPDQ 143 (170)
T ss_pred HHHHHHcCCeEEEEccCcCCcc
Confidence 6788888888888888876653
No 300
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.32 E-value=1.1e+02 Score=28.84 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=33.0
Q ss_pred CCCCChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+-..++.+++.|++.|.++|-= -.+-+..-.+|.+.|.++||..|
T Consensus 14 dg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI 60 (1022)
T TIGR00594 14 DGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPI 60 (1022)
T ss_pred cccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEE
Confidence 45677999999999999988610 01112334689999999998764
No 301
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=25.12 E-value=1.1e+02 Score=26.95 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHcCCceecCC-CccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 53 NNPEIICIANNINVDAIHPG-YGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPG-YGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
-+..+++.|++.|.-. | +|-+.-+|..+..+...|++++.=++.
T Consensus 483 ~i~~vi~~a~~~g~~v---~vCGe~a~~p~~~~~l~~~G~~~lsv~~~ 527 (565)
T TIGR01417 483 LIKLVIDAAKAEGIWV---GMCGEMAGDERAIPLLLGLGLRELSMSAS 527 (565)
T ss_pred HHHHHHHHHHHcCCeE---EEeCCcCCCHHHHHHHHHCCCCEEEEChH
Confidence 3677788888888543 4 577888999999999999999744443
No 302
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=24.95 E-value=1.5e+02 Score=18.70 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
-..+.+..+..|||+|.-| .+++++ .+.+.++||..+--
T Consensus 52 ~~~~~~~l~~~~v~~vi~~--~iG~~~--~~~l~~~gI~v~~~ 90 (103)
T cd00851 52 GGKAAEFLADEGVDVVIVG--GIGPRA--LNKLRNAGIKVYKG 90 (103)
T ss_pred chHHHHHHHHcCCCEEEeC--CCCcCH--HHHHHHCCCEEEEc
Confidence 4678888888999998875 456555 47788999998833
No 303
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.89 E-value=1.3e+02 Score=23.14 Aligned_cols=40 Identities=13% Similarity=-0.028 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHcCCceecCCCccCC-CCHHHHHHHHhCCCe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLS-EREDFAKAVIGAALE 92 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLS-En~~Fa~~~~~~gi~ 92 (103)
-|....++-.++.++|+|.-+.. -. +...|.+.+++.|+.
T Consensus 180 ~D~s~~i~~i~~~~~d~v~~~~~-~~~~~~~~~~~~~~~g~~ 220 (347)
T cd06336 180 TDFSPIVTKLLAEKPDVIFLGGP-SPAPAALVIKQARELGFK 220 (347)
T ss_pred cchHHHHHHHHhcCCCEEEEcCC-CchHHHHHHHHHHHcCCC
Confidence 56778888888899999864322 24 677888999888765
No 304
>PRK09248 putative hydrolase; Validated
Probab=24.77 E-value=1.8e+02 Score=21.85 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHcCCce-e------cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDA-I------HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~da-I------HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..+.+++.+++.|+-. | ++.+|....+..+.+.+.+.|+.++
T Consensus 141 ~~~~~~~~~~~~g~~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~ 189 (246)
T PRK09248 141 DIEAVVKAAKEHNVALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVA 189 (246)
T ss_pred cHHHHHHHHHHhCCEEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEE
Confidence 3456666666655411 1 1233433455666666666666554
No 305
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.75 E-value=71 Score=25.75 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
.|.+.+...+..+++|||++=+..|
T Consensus 151 ~~T~peea~~Fv~~TgvD~LAvaiG 175 (282)
T TIGR01858 151 LYTDPQEAKEFVEATGVDSLAVAIG 175 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEecccC
Confidence 4999999999999999998666655
No 306
>PRK05402 glycogen branching enzyme; Provisional
Probab=24.66 E-value=1e+02 Score=27.60 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCcee-------cCC---Cc-----cCC---------CCHHHHHHHHhCCCeEe
Q psy6380 56 EIICIANNINVDAI-------HPG---YG-----FLS---------EREDFAKAVIGAALEFI 94 (103)
Q Consensus 56 ~Ii~~A~~~g~daI-------HPG---YG-----FLS---------En~~Fa~~~~~~gi~FI 94 (103)
++|.-.++.|+++| ||. || |.+ |=-.|.+.|.++||..|
T Consensus 270 ~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vi 332 (726)
T PRK05402 270 QLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVI 332 (726)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 55677799999998 453 22 222 33456777788999876
No 307
>PRK03732 hypothetical protein; Provisional
Probab=24.65 E-value=70 Score=22.74 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.1
Q ss_pred hHHHHHHHHHcCCceecCCCcc
Q psy6380 54 NPEIICIANNINVDAIHPGYGF 75 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGF 75 (103)
++++.+-|++.||+||. |--|
T Consensus 69 ~~rm~~~A~~lGAnAVV-gvr~ 89 (114)
T PRK03732 69 LRRMALHAKELGANAVV-NFRF 89 (114)
T ss_pred HHHHHHHHHHcCCCEEE-EEEE
Confidence 67889999999999987 4434
No 308
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=24.54 E-value=1.7e+02 Score=20.19 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHH-----hCCCeEeCCChhh
Q psy6380 54 NPEIICIANNINVDAI--HPGYGFLSEREDFAKAVI-----GAALEFIGPTTNV 100 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~-----~~gi~FIGP~~~~ 100 (103)
.+.|++..++.|++.| +||- -.-.|.+.+. +.+|+||....|.
T Consensus 2 ~e~i~~~L~~~gv~~vfg~PG~----~~~~~~~~l~~~~~~~~~i~~i~~~~E~ 51 (160)
T cd07034 2 NEAVARGALAAGVDVVAAYPIT----PSTEIAETLAKAVLGELGGVVVQAESEH 51 (160)
T ss_pred hHHHHHHHHHhCCCEEEEeCCC----CHHHHHHHHHHHhccCCCcEEEEeCCHH
Confidence 3789999999999876 4663 3445667775 4789999887653
No 309
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=24.53 E-value=1e+02 Score=23.43 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=35.4
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
..+-+++.+++++++.++..+.-|-|- +...+.+ -...+|+|+|+-+.
T Consensus 205 ~~~K~~~~li~a~~~~~~~l~ivG~g~--~~~~l~~-~~~~~V~~~g~~~~ 252 (351)
T cd03804 205 VPYKRIDLAIEAFNKLGKRLVVIGDGP--ELDRLRA-KAGPNVTFLGRVSD 252 (351)
T ss_pred ccccChHHHHHHHHHCCCcEEEEECCh--hHHHHHh-hcCCCEEEecCCCH
Confidence 456789999999999998888888874 2233433 33567999998654
No 310
>PRK10637 cysG siroheme synthase; Provisional
Probab=24.48 E-value=3e+02 Score=23.15 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=11.5
Q ss_pred HHcCcEEEEeeccc
Q psy6380 16 IQAGTTIIILSKRK 29 (103)
Q Consensus 16 ~~~g~tvai~t~~d 29 (103)
.++|+.|++++-.|
T Consensus 290 ~~~G~~Vv~L~sGD 303 (457)
T PRK10637 290 AQKGKRVVRLKGGD 303 (457)
T ss_pred HhCCCEEEEEeCCC
Confidence 36789999999877
No 311
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.40 E-value=86 Score=18.53 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHHHHHhCCCeEeCCC
Q psy6380 81 DFAKAVIGAALEFIGPT 97 (103)
Q Consensus 81 ~Fa~~~~~~gi~FIGP~ 97 (103)
++.+.++++|+.+++|.
T Consensus 56 ~~~~~L~~~G~~v~~~~ 72 (72)
T cd04883 56 PIIEDLRRAGYEVLWPN 72 (72)
T ss_pred HHHHHHHHCCCeeeCCC
Confidence 67777788888888874
No 312
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=24.25 E-value=75 Score=24.37 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=21.7
Q ss_pred cCCCccCCCCHHHHHHHHhCCCeEeCCChhh
Q psy6380 70 HPGYGFLSEREDFAKAVIGAALEFIGPTTNV 100 (103)
Q Consensus 70 HPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~ 100 (103)
.-||| .|+-||..++.+.|..+.=++..+
T Consensus 190 f~G~G--~ED~D~~~RL~~~~~~~~~~~~~~ 218 (281)
T PF10111_consen 190 FRGWG--YEDIDFGYRLKKAGYKFKRSPDYL 218 (281)
T ss_pred ccCCC--cchHHHHHHHHHcCCcEecChHHh
Confidence 33444 499999999999998886655443
No 313
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.23 E-value=3.2e+02 Score=20.62 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
+.+.|.+++.+.+.|.|.-+ | .|+++|.+.+.+
T Consensus 63 ~~~~i~~~~~~~~~d~vQLH-G--~e~~~~~~~l~~ 95 (207)
T PRK13958 63 DLTTIEHILSNTSINTIQLH-G--TESIDFIQEIKK 95 (207)
T ss_pred CHHHHHHHHHhCCCCEEEEC-C--CCCHHHHHHHhh
Confidence 47889999999999987654 3 578888888765
No 314
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.22 E-value=1.5e+02 Score=22.52 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe--EeCCC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE--FIGPT 97 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~--FIGP~ 97 (103)
-|...++.-.++.|+|+|.-+- +-.+-..|.+.+.+.|+. |+|+.
T Consensus 179 ~d~~~~v~~i~~~~~d~vi~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 225 (344)
T cd06348 179 TDFQAQITAVLNSKPDLIVISA-LAADGGNLVRQLRELGYNGLIVGGN 225 (344)
T ss_pred CCHHHHHHHHHhcCCCEEEECC-cchhHHHHHHHHHHcCCCCceeccc
Confidence 4677888888999999965332 335667788888888755 56653
No 315
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=24.20 E-value=2.7e+02 Score=21.68 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=29.8
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FI 94 (103)
..+.+...++++..+.|.|++-+|== |=-.-+.|.+....+++.|+
T Consensus 59 ~~~~~g~~~~~~~n~~g~Da~~~GNHEfD~G~~~L~~~~~~~~fp~l 105 (285)
T cd07405 59 SDLQDAEPDFRGMNLVGYDAMAVGNHEFDNPLEVLRQQMKWANFPLL 105 (285)
T ss_pred HHhcCcchHHHHHHhhCCcEEeecccccccCHHHHHHHHhhCCCCEE
Confidence 34556678899999999999988731 22223446666655555444
No 316
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.03 E-value=1.5e+02 Score=21.95 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=27.5
Q ss_pred HHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 60 IANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 60 ~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.++..+++.|++-|.+ .-++++.+.+.++|+...
T Consensus 172 ~~~~~~~~~i~~~~~~-~~~~~~v~~~~~~G~~v~ 205 (233)
T cd08582 172 LAKSGGAAGLDLSYEK-KLNPAFIKALRDAGLKLN 205 (233)
T ss_pred HHHhhCceEEcccccc-cCCHHHHHHHHHCCCEEE
Confidence 5577889999998876 457899999999998654
No 317
>KOG0226|consensus
Probab=23.97 E-value=49 Score=27.32 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=27.2
Q ss_pred cCCCccCC--CCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 70 HPGYGFLS--EREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 70 HPGYGFLS--En~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
--||||+| +-++|++++.+.+=..+|-.+..+|
T Consensus 231 SkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 46999976 7789999999988888888776655
No 318
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=23.91 E-value=1.3e+02 Score=22.85 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC----eEeCCC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL----EFIGPT 97 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi----~FIGP~ 97 (103)
-|...+++-.++.+.|+|.- .++-.+...|.+.+.+.|+ .|+|..
T Consensus 182 ~d~~~~v~~i~~~~~d~ii~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 230 (346)
T cd06330 182 PDYGSEITALLAAKPDAIFS-SLWGGDLVTFVRQANARGLFDGTTVVLTL 230 (346)
T ss_pred cccHHHHHHHHhcCCCEEEE-ecccccHHHHHHHHHhcCcccCceEEeec
Confidence 46778888888999998763 2233677889899888876 577644
No 319
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=23.79 E-value=96 Score=26.79 Aligned_cols=79 Identities=11% Similarity=-0.005 Sum_probs=50.8
Q ss_pred hHHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC
Q psy6380 12 YDSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 12 ~~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi 91 (103)
++.|++.|.+| -++| ..+..-||....++.++--+...+-+.|++.|...-+||.|= .|.-+.+. ..=|.
T Consensus 39 ~~~f~~~~~~v---~d~~----~~v~~~DH~~p~~~~~~a~~~~~~r~fa~~~gi~~~~~g~GI--~Hqv~~e~-~~PG~ 108 (436)
T cd01581 39 RDELKELACLG---FSAD----LVMQSFCHTAAYPKPVDVKTHRTLPDFISNRGGVALRPGDGV--IHSWLNRM-LLPDT 108 (436)
T ss_pred HHHHHHcCCcc---cCCc----cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHcCCcEECCCCCe--eeeeehhh-ccCCc
Confidence 35566666433 2222 455666886553556666778889999999999888889882 11112222 36688
Q ss_pred eEeCCChhh
Q psy6380 92 EFIGPTTNV 100 (103)
Q Consensus 92 ~FIGP~~~~ 100 (103)
..+|-.++|
T Consensus 109 ~ivGtDSHT 117 (436)
T cd01581 109 VGTGGDSHT 117 (436)
T ss_pred eEEeecccc
Confidence 888887765
No 320
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=23.58 E-value=1.3e+02 Score=24.32 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=25.3
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCcee
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAI 69 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daI 69 (103)
..+|+.| +||+=.|+.++. -|++.+.++++++|+..|
T Consensus 45 ~~~k~~Gg~tiVd~T~~g~G--------------------Rd~~~l~~is~~tGv~II 82 (308)
T PF02126_consen 45 KEFKAAGGRTIVDATPIGLG--------------------RDVEALREISRRTGVNII 82 (308)
T ss_dssp HHHHHTTEEEEEE--SGGGT--------------------B-HHHHHHHHHHHT-EEE
T ss_pred HHHHHcCCCEEEecCCcccC--------------------cCHHHHHHHHHHhCCeEE
Confidence 4577888 888877776641 247899999999998765
No 321
>PRK09776 putative diguanylate cyclase; Provisional
Probab=23.30 E-value=1.5e+02 Score=26.39 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
=+..|+++|++.|+..|-.|- |+.+-.+.|.+.|+.++
T Consensus 1032 ~~~~i~~~~~~~~~~~iaegV----Et~~~~~~l~~~g~~~~ 1069 (1092)
T PRK09776 1032 LISIIQGHAQRLGMKTIAGPV----ELPLVLDTLSGIGVDLA 1069 (1092)
T ss_pred HHHHHHHHHHHcCCcEEeccc----CCHHHHHHHHHcCCCEE
Confidence 377899999999999999999 99999999999999543
No 322
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=23.23 E-value=88 Score=25.12 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCCCChHHHHHHHHHcCCceecCCCc
Q psy6380 48 VAAYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
..-|.|.+...++.+++|+|++=+..|
T Consensus 151 ~~~~TdP~~a~~Fv~~TgvD~LAvaiG 177 (287)
T PF01116_consen 151 ESLYTDPEEAKEFVEETGVDALAVAIG 177 (287)
T ss_dssp TTCSSSHHHHHHHHHHHTTSEEEE-SS
T ss_pred cccccCHHHHHHHHHHhCCCEEEEecC
Confidence 457999999999999999999777766
No 323
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=23.16 E-value=95 Score=23.99 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHcCCcee-cCCCcc----CCCCHHHHHHHHhC-CCeE
Q psy6380 51 YLNNPEIICIANNINVDAI-HPGYGF----LSEREDFAKAVIGA-ALEF 93 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daI-HPGYGF----LSEn~~Fa~~~~~~-gi~F 93 (103)
-..++.+.+++++.++|+| +.+-.| ..+.+.+.+.+++. ||-+
T Consensus 272 ~~r~~~~~~~~~~~~~dgvi~~~~~~C~~~~~~~~~l~~~~~~~~gIP~ 320 (349)
T PF06050_consen 272 ERRIEYIDDLIEKYGADGVIFHGHKGCDPYSYDQPLLKEALREFLGIPV 320 (349)
T ss_dssp HCHHHHHHHHHHHTT-SEEEEEEETT-HHHHCCHHHHHHHHHCCHT--E
T ss_pred HhHHHHHHHHHHHhCCCEEEEhHhcCCCcHHHHHHHHHHHHHHhcCCCe
Confidence 3668899999999999974 333333 57889999999999 9866
No 324
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=23.13 E-value=1.6e+02 Score=28.22 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=34.6
Q ss_pred CCCCChHHHHHHHHHcCCceec-CCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIH-PGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIH-PGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+-+.++.+++.|++.|.++|- =-.|-+..-.+|.+.|.++||..|
T Consensus 15 dg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpI 61 (1135)
T PRK05673 15 DGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPI 61 (1135)
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEE
Confidence 4567799999999999999872 111234445789999999998765
No 325
>PRK06852 aldolase; Validated
Probab=23.07 E-value=81 Score=25.86 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCCCChHHHHHHHHHcCCceecCCCccC
Q psy6380 48 VAAYLNNPEIICIANNINVDAIHPGYGFL 76 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daIHPGYGFL 76 (103)
..-.-|.+.+++.+.+.|+|+|--..|.+
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav~~~~G~l 83 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVFATQLGLI 83 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEEEeCHHHH
Confidence 44677999999999999999977666654
No 326
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=23.06 E-value=2.1e+02 Score=27.48 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=35.3
Q ss_pred CCCCCChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEe
Q psy6380 48 VAAYLNNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-++-+.++.+++.|++.|-.||-= =.|-|..-.+|-+.|.++||.-|
T Consensus 14 ldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPI 61 (1034)
T PRK07279 14 MDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPI 61 (1034)
T ss_pred ccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEE
Confidence 356778999999999999877521 12334455899999999998643
No 327
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=22.87 E-value=1.4e+02 Score=24.27 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC--eEeCCC
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL--EFIGPT 97 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi--~FIGP~ 97 (103)
..+++..+..++++|.- ++...+-..|.+.+++.|+ .|||..
T Consensus 224 ~~~~~~ik~~~a~vVvv-~~~~~~~~~l~~~a~~~g~~~~wigs~ 267 (403)
T cd06361 224 RTTEKIIEENKVNVIVV-FARQFHVFLLFNKAIERNINKVWIASD 267 (403)
T ss_pred HHHHHHHhcCCCeEEEE-EeChHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35556677889998763 4444455666666666655 677644
No 328
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.58 E-value=83 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
-|.+.+...++++++|+|++=+.+|
T Consensus 153 ~~T~peea~~Fv~~TgvD~LAvaiG 177 (286)
T PRK12738 153 FLTDPQEAKRFVELTGVDSLAVAIG 177 (286)
T ss_pred cCCCHHHHHHHHHHhCCCEEEeccC
Confidence 3999999999999999998666655
No 329
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=22.05 E-value=1.6e+02 Score=28.03 Aligned_cols=46 Identities=20% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCCCChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
++-..++.+++.|++.|-.||-= =.|-|..-.+|.++|.++||.-|
T Consensus 15 dg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPI 61 (971)
T PRK05898 15 SSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPI 61 (971)
T ss_pred cccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEE
Confidence 45567999999999999887521 12345556899999999998754
No 330
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.03 E-value=1.5e+02 Score=24.09 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=36.7
Q ss_pred HHHcC-cEEEEeecccccccccce-e----cccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLWL-L----RDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~~-~----AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+..+.+..+.. + ...+ ....+..++.+++++++.+++.++|.|.
T Consensus 23 l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~II 90 (377)
T cd08188 23 ARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVII 90 (377)
T ss_pred HHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 45668 899999987654332211 1 1111 1223455788899999999999999865
No 331
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=22.02 E-value=3e+02 Score=20.17 Aligned_cols=42 Identities=14% Similarity=0.017 Sum_probs=25.7
Q ss_pred CCCCCCCChHHHHHHHHHcCCceecCC--CccCCCCHHHHHHHH
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAIHPG--YGFLSEREDFAKAVI 87 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daIHPG--YGFLSEn~~Fa~~~~ 87 (103)
++-.++.+...+.+...+.||++||.- -++...+.+..+.+.
T Consensus 25 ~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~ 68 (217)
T cd00331 25 GLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVR 68 (217)
T ss_pred CcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHH
Confidence 344567778888888888888888753 233334444444443
No 332
>PRK00208 thiG thiazole synthase; Reviewed
Probab=21.94 E-value=1.8e+02 Score=23.43 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=33.4
Q ss_pred CCCCChHHHHHHHHHc---CCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 49 AAYLNNPEIICIANNI---NVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~---g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
..+-|+...+++|++. |-..+ -..+.|+.+++++++.|..+|=
T Consensus 104 ~llpd~~~tv~aa~~L~~~Gf~vl----pyc~~d~~~ak~l~~~G~~~vm 149 (250)
T PRK00208 104 TLLPDPIETLKAAEILVKEGFVVL----PYCTDDPVLAKRLEEAGCAAVM 149 (250)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEE----EEeCCCHHHHHHHHHcCCCEeC
Confidence 3466788888888887 65553 1378999999999999999883
No 333
>PHA02115 hypothetical protein
Probab=21.86 E-value=52 Score=23.11 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=15.9
Q ss_pred HHHcCcEEEEeecccccccccce
Q psy6380 15 LIQAGTTIIILSKRKLEDSSLWL 37 (103)
Q Consensus 15 ~~~~g~tvai~t~~dl~~a~~~~ 37 (103)
-|+.|-+|||||++- .+.|+-
T Consensus 50 hke~g~~iai~serh--raqfvn 70 (105)
T PHA02115 50 HKELGCFVAVYSERH--RAQFVN 70 (105)
T ss_pred hhhcceEEEEeehhh--Hhhhhc
Confidence 478999999999986 345543
No 334
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.85 E-value=89 Score=25.18 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
.|.+.+...++++++|||++-...|
T Consensus 153 ~~T~pe~a~~Fv~~TgvD~LAvaiG 177 (284)
T PRK12857 153 AMTDPEEARRFVEETGVDALAIAIG 177 (284)
T ss_pred hcCCHHHHHHHHHHHCCCEEeeccC
Confidence 3999999999999999998665555
No 335
>PRK15138 aldehyde reductase; Provisional
Probab=21.84 E-value=1.2e+02 Score=24.94 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCCCCCCChHHHHHHHHHcCCceec
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
.+..++-+++++++.+++.++|+|.
T Consensus 66 ~~~p~~~~v~~~~~~~~~~~~D~II 90 (387)
T PRK15138 66 EPNPTYETLMKAVKLVREEKITFLL 90 (387)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4567788999999999999999876
No 336
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=21.63 E-value=1.6e+02 Score=26.87 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=33.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCC-CCHHHHHHHHhCCCeEeCCChhh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLS-EREDFAKAVIGAALEFIGPTTNV 100 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLS-En~~Fa~~~~~~gi~FIGP~~~~ 100 (103)
++++++.|++.|...-. .|.+. .+|+.+..+...|++|+-=++++
T Consensus 724 i~~vi~~a~~~g~~vgi--cge~~~~~p~~~~~l~~~G~~~ls~~~d~ 769 (782)
T TIGR01418 724 IEMAIKAAKEHGKKVGI--CGQAPSDYPEVVEFLVEEGIDSISLNPDA 769 (782)
T ss_pred HHHHHHHHHhcCCeEEE--eCCCCCCCHHHHHHHHHcCCCEEEECcch
Confidence 67888899998875432 44333 38999999999999987555543
No 337
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=21.54 E-value=1.9e+02 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=27.3
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..+|=.+|.+.|+..+.|=||+=+| ++.+.+-++|+.|+
T Consensus 101 k~rve~lc~~lGl~~~~PLWg~d~~--ell~e~~~~Gf~~~ 139 (223)
T COG2102 101 KERVERLCEELGLKVYAPLWGRDPE--ELLEEMVEAGFEAI 139 (223)
T ss_pred HHHHHHHHHHhCCEEeecccCCCHH--HHHHHHHHcCCeEE
Confidence 4566677888888888888887443 45666667777664
No 338
>PRK15108 biotin synthase; Provisional
Probab=21.46 E-value=3.1e+02 Score=22.29 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNV 100 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~ 100 (103)
.+..+++.+|+.++..+ --.|+++ .+-.+.+.++|+..+.=+-++
T Consensus 112 ~i~~~i~~ik~~~i~v~-~s~G~ls--~e~l~~LkeAGld~~n~~leT 156 (345)
T PRK15108 112 YLEQMVQGVKAMGLETC-MTLGTLS--ESQAQRLANAGLDYYNHNLDT 156 (345)
T ss_pred HHHHHHHHHHhCCCEEE-EeCCcCC--HHHHHHHHHcCCCEEeecccc
Confidence 34555666666665432 2345677 556678888888766544433
No 339
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=21.44 E-value=98 Score=25.44 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=25.6
Q ss_pred cCCceecCCCccC-CCC--------HHHHHHHHhCCCeEeC
Q psy6380 64 INVDAIHPGYGFL-SER--------EDFAKAVIGAALEFIG 95 (103)
Q Consensus 64 ~g~daIHPGYGFL-SEn--------~~Fa~~~~~~gi~FIG 95 (103)
..|+.|||.|.++ .++ ++|++.+.++|+.+..
T Consensus 268 ~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~ 308 (355)
T PRK11143 268 KYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHP 308 (355)
T ss_pred hhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEE
Confidence 4688999999866 443 5899999999998754
No 340
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.43 E-value=1.3e+02 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=21.5
Q ss_pred CCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 48 VAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
..++-+++++++.+++.++|.|. -|=|
T Consensus 61 ~p~~~~v~~~~~~~~~~~~d~iiavGGG 88 (345)
T cd08171 61 ESTYENVERLKKNPAVQEADMIFAVGGG 88 (345)
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 45788899999999999999865 3433
No 341
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.42 E-value=92 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
.|.+.+...++++++|||++-+..|
T Consensus 153 ~~T~peeA~~Fv~~TgvD~LAvaiG 177 (284)
T PRK12737 153 MYTNPDAAAEFVERTGIDSLAVAIG 177 (284)
T ss_pred cCCCHHHHHHHHHHhCCCEEeeccC
Confidence 4999999999999999998665555
No 342
>PHA02597 30.2 hypothetical protein; Provisional
Probab=21.31 E-value=63 Score=22.92 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=16.1
Q ss_pred HHHHHHc--CCceecCCCccC
Q psy6380 58 ICIANNI--NVDAIHPGYGFL 76 (103)
Q Consensus 58 i~~A~~~--g~daIHPGYGFL 76 (103)
+++|++. |++.||..||+.
T Consensus 158 i~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 158 LDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred HHHHHHHHcCCcEEEecchhh
Confidence 6778888 999999999875
No 343
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=21.28 E-value=86 Score=25.36 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG 74 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG 74 (103)
-|.+.+...++.+++|+|++-+..|
T Consensus 154 ~yT~peea~~Fv~~TgvD~LAvaiG 178 (286)
T PRK08610 154 IYADPKECQELVEKTGIDALAPALG 178 (286)
T ss_pred ccCCHHHHHHHHHHHCCCEEEeecc
Confidence 4999999999999999998766665
No 344
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.27 E-value=1.5e+02 Score=24.17 Aligned_cols=46 Identities=7% Similarity=0.270 Sum_probs=30.6
Q ss_pred CCCCCCCChHHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAI--HPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
-..+.|.+++..|+-.|+.|.-.| +|--|... -.|++.+++.|+-|
T Consensus 89 ~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliD--G~fR~~LEe~Gmgy 136 (268)
T PF09370_consen 89 CATDPFRDMDRFLDELKELGFSGVQNFPTVGLID--GQFRQNLEETGMGY 136 (268)
T ss_dssp -TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG----HHHHHHHHHTT--H
T ss_pred cCcCCCCcHHHHHHHHHHhCCceEEECCcceeec--cHHHHHHHhcCCCH
Confidence 356789999999999999998876 68888764 67999999998765
No 345
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=20.97 E-value=1.2e+02 Score=21.61 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=33.9
Q ss_pred ChHHHHHHHH----HcCCceecCCCccCCCCHHHHHHHHh-CCCeEeCCChhhh
Q psy6380 53 NNPEIICIAN----NINVDAIHPGYGFLSEREDFAKAVIG-AALEFIGPTTNVL 101 (103)
Q Consensus 53 ni~~Ii~~A~----~~g~daIHPGYGFLSEn~~Fa~~~~~-~gi~FIGP~~~~m 101 (103)
..+.+.++++ +.|+|+|..|-.-|+==-.+.+.+++ .|+.++=|...++
T Consensus 159 ~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~ 212 (216)
T PF01177_consen 159 QIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAA 212 (216)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHH
Confidence 3456777775 88999999998777644244455554 4899887766554
No 346
>PRK07695 transcriptional regulator TenI; Provisional
Probab=20.96 E-value=2e+02 Score=20.94 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=12.7
Q ss_pred HHHHHHcCCceecCCCcc
Q psy6380 58 ICIANNINVDAIHPGYGF 75 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGF 75 (103)
.++|.+.++|.||-|.+.
T Consensus 66 ~~la~~~~~~gvHl~~~~ 83 (201)
T PRK07695 66 VDIALLLNIHRVQLGYRS 83 (201)
T ss_pred HHHHHHcCCCEEEeCccc
Confidence 567777777777776653
No 347
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=20.91 E-value=77 Score=23.40 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.6
Q ss_pred HHHHHHcCCceecCCCccC
Q psy6380 58 ICIANNINVDAIHPGYGFL 76 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFL 76 (103)
+++|++.|+.+|.--||+.
T Consensus 175 i~aA~~Ag~~~v~v~~g~~ 193 (220)
T COG0546 175 ILAAKAAGVPAVGVTWGYN 193 (220)
T ss_pred HHHHHHcCCCEEEEECCCC
Confidence 5678888888888888885
No 348
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=20.87 E-value=1.7e+02 Score=27.81 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=34.4
Q ss_pred CCCCChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
++-+.++.+++.|++.|.++|-= =.+-+..-.+|.+.|.+.||..|
T Consensus 18 dg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI 64 (1046)
T PRK05672 18 DGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLV 64 (1046)
T ss_pred ccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEE
Confidence 45667999999999999987611 11224445889999999999765
No 349
>PLN02469 hydroxyacylglutathione hydrolase
Probab=20.83 E-value=1.2e+02 Score=23.63 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=25.0
Q ss_pred ChHHHHHHHHH----c-CCceecCCCccCCCCHHHHHHHH
Q psy6380 53 NNPEIICIANN----I-NVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 53 ni~~Ii~~A~~----~-g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
+.+.+.+..++ . +-..|+||.|.-.+|..||..++
T Consensus 149 ~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~nl~Fa~~ve 188 (258)
T PLN02469 149 TAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLKFALTVE 188 (258)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEcCCCCchhHHHHHHhhC
Confidence 45555555432 2 34579999999999999988764
No 350
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=20.71 E-value=1.4e+02 Score=21.28 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.0
Q ss_pred HHHHHHcCCceecCCCccC
Q psy6380 58 ICIANNINVDAIHPGYGFL 76 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFL 76 (103)
+++|.+.|+|.||-|.+-+
T Consensus 66 ~~la~~~g~~GvHl~~~~~ 84 (196)
T TIGR00693 66 VDLALALGADGVHLGQDDL 84 (196)
T ss_pred HHHHHHcCCCEEecCcccC
Confidence 5889999999999887644
No 351
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=20.69 E-value=3.3e+02 Score=19.56 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=37.4
Q ss_pred hHHHHHcCcEEEEeecccccccccceeccc-CCC--CCCCCCCCChHHHHHHHHHcCCc---eecCCCccCCCCHHHHHH
Q psy6380 12 YDSLIQAGTTIIILSKRKLEDSSLWLLRDQ-GKR--MPPVAAYLNNPEIICIANNINVD---AIHPGYGFLSEREDFAKA 85 (103)
Q Consensus 12 ~~~~~~~g~tvai~t~~dl~~a~~~~~AD~-~~~--~~~~~sYlni~~Ii~~A~~~g~d---aIHPGYGFLSEn~~Fa~~ 85 (103)
...|++.|-.++|.|-.... .......+ +.. .....+ ..+.+..++++.|++ +++-|=+. .+. ..
T Consensus 57 i~~L~~~Gi~v~I~T~~~~~--~v~~~l~~lgl~~~f~g~~~--k~~~l~~~~~~~gl~~~ev~~VGDs~----~D~-~~ 127 (183)
T PRK09484 57 IRCLLTSGIEVAIITGRKSK--LVEDRMTTLGITHLYQGQSN--KLIAFSDLLEKLAIAPEQVAYIGDDL----IDW-PV 127 (183)
T ss_pred HHHHHHCCCEEEEEeCCCcH--HHHHHHHHcCCceeecCCCc--HHHHHHHHHHHhCCCHHHEEEECCCH----HHH-HH
Confidence 35678889899999886521 11111111 000 000111 146777777777763 55555321 233 45
Q ss_pred HHhCCCeEe
Q psy6380 86 VIGAALEFI 94 (103)
Q Consensus 86 ~~~~gi~FI 94 (103)
...+|+.++
T Consensus 128 a~~aG~~~~ 136 (183)
T PRK09484 128 MEKVGLSVA 136 (183)
T ss_pred HHHCCCeEe
Confidence 566777754
No 352
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.61 E-value=3e+02 Score=20.73 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHHHHH--cCCce--ecCCCcc------CCCCHHHHHHHHhCCCeE-eCCChhhh
Q psy6380 55 PEIICIANN--INVDA--IHPGYGF------LSEREDFAKAVIGAALEF-IGPTTNVL 101 (103)
Q Consensus 55 ~~Ii~~A~~--~g~da--IHPGYGF------LSEn~~Fa~~~~~~gi~F-IGP~~~~m 101 (103)
+.|.+..++ .++|. |.+.||. ..+.-++++++.++|.-. ||=.+.++
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 555544433 34664 6778872 334467888888887643 45444443
No 353
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=20.59 E-value=1.6e+02 Score=22.29 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=29.5
Q ss_pred HcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 17 QAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 17 ~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
..||+++|+|..||+++ +...+.+. ....-.-+.+.=.+.|.+.|+..|.
T Consensus 155 ~dgr~~vi~s~~Dl~~a--W~~~~~~~--~~~~~~~~~~~qre~A~r~GvNiv~ 204 (207)
T PF13709_consen 155 DDGRLVVIYSPNDLGCA--WERDESGN--PPGPVSPGGERQREMAYRFGVNIVM 204 (207)
T ss_pred cCCEEEEEECCCchHHH--hhCCCCCC--CccccCcchhhhHHHHHHhccceEE
Confidence 45699999999998642 22222211 1112223346666888889987663
No 354
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=20.47 E-value=1.8e+02 Score=27.66 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=33.6
Q ss_pred CCCCChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
++-+.++.|++.|++.|.++|-= =.+=+..-.+|.+.|.++||..|
T Consensus 16 Dg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpI 62 (973)
T PRK07135 16 SSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPI 62 (973)
T ss_pred ccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEE
Confidence 45667999999999999988610 11222333789999999999765
No 355
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=20.46 E-value=99 Score=22.78 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=16.8
Q ss_pred CceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 66 VDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 66 ~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
.|+|++-...-.+...+++.++..|+.++++
T Consensus 49 ~d~v~~r~~~~~~~~~~~~~l~~~g~~~~~~ 79 (277)
T TIGR00768 49 LDVVIVRIVSMFRGLAVARYLESLGVPVINS 79 (277)
T ss_pred CCEEEEechhHhhHHHHHHHHHHCCCeeeCC
Confidence 4454444322223345666667777777665
No 356
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=20.42 E-value=71 Score=22.43 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=30.2
Q ss_pred hHHHHHHHHHcCCceecC--CCc--cCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHP--GYG--FLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHP--GYG--FLSEn~~Fa~~~~~~gi~FIG 95 (103)
.+.|.+++++.++++|+- .|+ ....+....+.|.+.||.+.-
T Consensus 77 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~ 122 (165)
T PF00875_consen 77 EEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHT 122 (165)
T ss_dssp HHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEE
Confidence 567778999999998763 333 345566677888888998864
No 357
>KOG2923|consensus
Probab=20.37 E-value=77 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=11.7
Q ss_pred cCCcch---HHHHHcCcEEEE
Q psy6380 7 PCKDNY---DSLIQAGTTIII 24 (103)
Q Consensus 7 ~~~~~~---~~~~~~g~tvai 24 (103)
||.|+| +.-.+.|+.||.
T Consensus 26 pCGDrf~It~edL~~ge~Va~ 46 (67)
T KOG2923|consen 26 PCGDRFQITLEDLENGEDVAR 46 (67)
T ss_pred CCCCeeeecHHHHhCCCeeec
Confidence 567876 344567888774
No 358
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=20.36 E-value=1.8e+02 Score=20.27 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.7
Q ss_pred CCCChHHHHHHHHHcCCceecCCCc---cCCCCHHHHHHHHhCCCeE
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYG---FLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYG---FLSEn~~Fa~~~~~~gi~F 93 (103)
+|+=...|-+-|++.|+..|..+-| +=+-=..|++.+.++||.|
T Consensus 73 a~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 73 AYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLEF 119 (119)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB-
T ss_pred HHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCCC
Confidence 5676778889999999988887655 3344467899999999987
No 359
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=20.32 E-value=2.1e+02 Score=25.03 Aligned_cols=51 Identities=33% Similarity=0.544 Sum_probs=33.2
Q ss_pred CcchHHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc-------CCCCHH
Q psy6380 9 KDNYDSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF-------LSERED 81 (103)
Q Consensus 9 ~~~~~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF-------LSEn~~ 81 (103)
.||.+-|++.|-.|.-+|+ |+|... . -.||+|+=|=|| ||.|.+
T Consensus 261 ~~nl~~Lr~~GAelv~FSP--L~D~~l--------P-------------------~~~D~vYlgGGYPElfA~~L~~n~~ 311 (451)
T COG1797 261 PENLELLREAGAELVFFSP--LADEEL--------P-------------------PDVDAVYLGGGYPELFAEELSANES 311 (451)
T ss_pred HHHHHHHHHCCCEEEEeCC--cCCCCC--------C-------------------CCCCEEEeCCCChHHHHHHHhhCHH
Confidence 4788888888888888887 333222 1 236666666665 777777
Q ss_pred HHHHHHh
Q psy6380 82 FAKAVIG 88 (103)
Q Consensus 82 Fa~~~~~ 88 (103)
+.+.+.+
T Consensus 312 ~~~~i~~ 318 (451)
T COG1797 312 MRRAIKA 318 (451)
T ss_pred HHHHHHH
Confidence 7666643
No 360
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=20.23 E-value=86 Score=23.93 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=23.9
Q ss_pred ChHHHHHHH---HHcCCce-ecCCCccCCCCHHHHHHHH
Q psy6380 53 NNPEIICIA---NNINVDA-IHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 53 ni~~Ii~~A---~~~g~da-IHPGYGFLSEn~~Fa~~~~ 87 (103)
+.+.+++.. +....+. |+||.|...+|..|+..++
T Consensus 140 ~~~~~~~Sl~~l~~l~~~~~i~pGH~~~~~n~~fa~~~~ 178 (248)
T TIGR03413 140 TPEQMYDSLQRLAALPDDTLVYCAHEYTLSNLRFALTVE 178 (248)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCCchHHHHHHHHHhC
Confidence 344444333 3345654 8999999999999987763
No 361
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=20.23 E-value=2.5e+02 Score=20.21 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=12.1
Q ss_pred ChHHHHHHHHHcCCceec
Q psy6380 53 NNPEIICIANNINVDAIH 70 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIH 70 (103)
.+.++++-|.+.|+|.|.
T Consensus 19 ~~~~~i~~a~~~g~dlvv 36 (253)
T cd07197 19 KALRLIKEAAEQGADLIV 36 (253)
T ss_pred HHHHHHHHHHHCCCCEEE
Confidence 355666777777888753
No 362
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.22 E-value=1.7e+02 Score=21.86 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHcCCceecCCCccCCCCHH---------------HH---HHHHhCCCeEe
Q psy6380 58 ICIANNINVDAIHPGYGFLSERED---------------FA---KAVIGAALEFI 94 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFLSEn~~---------------Fa---~~~~~~gi~FI 94 (103)
++.|.+.|++.|.--||+-..+.. +. +.+.+.|+.++
T Consensus 97 i~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv 151 (261)
T cd07493 97 AEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVV 151 (261)
T ss_pred HHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEE
Confidence 344778899999999997654322 33 33456798886
No 363
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=20.13 E-value=4.1e+02 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=26.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
.+.|++++++.+.|.|.-+- .|+++|.+.+.+
T Consensus 318 ~~~i~~i~~~~~lD~vQLHG---~e~~~~~~~l~~ 349 (454)
T PRK09427 318 IEDIVDIAKQLSLAAVQLHG---DEDQAYIDALRE 349 (454)
T ss_pred HHHHHHHHHHcCCCEEEeCC---CCCHHHHHHHHh
Confidence 78899999999999876533 688999888865
No 364
>TIGR03270 methan_mark_4 putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases.
Probab=20.03 E-value=1.1e+02 Score=23.94 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=32.7
Q ss_pred HHHcC--cEEEEeecccccccccceecccCCCCCCCCCCC-ChHHHHHHHHHcCCceecCCC
Q psy6380 15 LIQAG--TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYL-NNPEIICIANNINVDAIHPGY 73 (103)
Q Consensus 15 ~~~~g--~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYl-ni~~Ii~~A~~~g~daIHPGY 73 (103)
++..| -.||+++..++ .|-|.. |.-.+=+ +.+.|.+.+++ ||.|.|-|+
T Consensus 84 a~~lGi~PKVAvLsa~E~--------~dvgvn-p~m~~TlddAa~L~km~~~-g~~a~~KgI 135 (202)
T TIGR03270 84 LRRLGREPKVAVLSGGRL--------GDVGRS-PEVDRSIADGELIARLLKD-GMEIEHYGI 135 (202)
T ss_pred HHHcCCCCcEEEEeeeec--------cCcCCC-CCccchHHHHHHHHHHHHC-CcchhccCc
Confidence 45556 56888887763 122233 3445566 58888888886 899988887
No 365
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=20.01 E-value=95 Score=24.74 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHcC-cEEEEeecccccccccce-----eccc----CCCCCCCCCCCChHHHHHHHHHcCCceec-CCCc
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLWL-----LRDQ----GKRMPPVAAYLNNPEIICIANNINVDAIH-PGYG 74 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~~-----~AD~----~~~~~~~~sYlni~~Ii~~A~~~g~daIH-PGYG 74 (103)
|++.| +.+.|+|+..+.+. +.. +.+. .....+..++-+++++++.+++.++|.|. -|=|
T Consensus 18 l~~~g~~~~livt~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 87 (337)
T cd08177 18 LERLGASRALVLTTPSLATK-LAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGG 87 (337)
T ss_pred HHHcCCCeEEEEcChHHHHH-HHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 56678 88999998764322 110 0010 11223345677899999999999999875 3433
Done!