Query psy6380
Match_columns 103
No_of_seqs 102 out of 1086
Neff 4.4
Searched_HMMs 29240
Date Sat Aug 17 00:58:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrx_A Acetyl-COA carboxylase 99.8 1.3E-20 4.4E-25 159.3 6.8 85 18-102 87-176 (587)
2 3glk_A Acetyl-COA carboxylase 99.8 2.7E-20 9.2E-25 155.0 6.1 85 18-102 71-160 (540)
3 3u9t_A MCC alpha, methylcroton 99.8 3.8E-19 1.3E-23 151.4 7.7 90 12-102 44-137 (675)
4 3n6r_A Propionyl-COA carboxyla 99.8 2.4E-19 8.2E-24 152.8 6.4 90 12-102 18-111 (681)
5 3hbl_A Pyruvate carboxylase; T 99.7 2.5E-17 8.7E-22 147.6 9.5 90 12-102 20-114 (1150)
6 3ouz_A Biotin carboxylase; str 99.7 2.9E-17 1E-21 130.3 7.5 90 12-102 22-115 (446)
7 3va7_A KLLA0E08119P; carboxyla 99.6 2.4E-16 8.3E-21 142.4 8.5 90 12-102 47-140 (1236)
8 2qf7_A Pyruvate carboxylase pr 99.6 1.1E-16 3.9E-21 143.4 5.4 90 12-102 30-130 (1165)
9 1w96_A ACC, acetyl-coenzyme A 99.5 7.7E-15 2.6E-19 120.8 6.2 90 13-102 64-169 (554)
10 2dzd_A Pyruvate carboxylase; b 99.5 1.8E-14 6E-19 114.5 7.4 90 12-102 22-116 (461)
11 2w70_A Biotin carboxylase; lig 99.5 4.8E-14 1.6E-18 111.4 6.0 90 12-102 18-111 (449)
12 1ulz_A Pyruvate carboxylase N- 99.5 3.8E-14 1.3E-18 112.0 5.2 90 12-102 18-110 (451)
13 2vpq_A Acetyl-COA carboxylase; 99.5 8E-14 2.7E-18 110.2 6.8 90 12-102 17-110 (451)
14 4dim_A Phosphoribosylglycinami 98.8 2.5E-09 8.5E-14 82.7 3.7 82 12-102 23-105 (403)
15 3vmm_A Alanine-anticapsin liga 98.7 6.7E-09 2.3E-13 84.7 4.9 78 19-102 52-135 (474)
16 4ffl_A PYLC; amino acid, biosy 98.6 2.2E-08 7.5E-13 76.8 3.8 81 13-102 18-99 (363)
17 1kjq_A GART 2, phosphoribosylg 98.5 2E-07 6.9E-12 71.6 7.5 81 12-102 27-108 (391)
18 2dwc_A PH0318, 433AA long hypo 98.5 1.5E-07 5E-12 73.9 5.6 81 12-102 35-116 (433)
19 1a9x_A Carbamoyl phosphate syn 98.3 3E-07 1E-11 81.5 4.7 86 11-102 33-124 (1073)
20 3aw8_A PURK, phosphoribosylami 98.1 6.1E-06 2.1E-10 63.3 6.1 77 12-102 15-92 (369)
21 4e4t_A Phosphoribosylaminoimid 97.9 1E-05 3.5E-10 64.6 5.4 79 12-102 51-129 (419)
22 2yw2_A Phosphoribosylamine--gl 97.8 1E-05 3.4E-10 63.2 3.8 50 49-102 46-98 (424)
23 4fu0_A D-alanine--D-alanine li 97.8 1.5E-06 5E-11 67.5 -1.9 48 55-102 87-135 (357)
24 2ip4_A PURD, phosphoribosylami 97.7 1.9E-05 6.7E-10 61.5 3.9 49 50-102 46-97 (417)
25 2qk4_A Trifunctional purine bi 97.7 2.6E-05 8.8E-10 61.7 4.3 49 50-102 73-124 (452)
26 3q2o_A Phosphoribosylaminoimid 97.6 0.00011 3.6E-09 57.1 5.5 78 12-102 30-108 (389)
27 2pn1_A Carbamoylphosphate synt 97.5 8.8E-05 3E-09 55.4 4.8 84 13-102 20-110 (331)
28 3ax6_A Phosphoribosylaminoimid 97.5 0.00026 8.7E-09 54.4 7.3 79 12-102 17-96 (380)
29 1a9x_A Carbamoyl phosphate syn 97.3 0.00012 4E-09 65.0 3.4 88 8-102 582-670 (1073)
30 3vot_A L-amino acid ligase, BL 97.3 0.00028 9.5E-09 55.1 5.1 83 12-102 21-108 (425)
31 2xcl_A Phosphoribosylamine--gl 97.2 0.00021 7.2E-09 55.6 3.3 50 49-102 46-98 (422)
32 3k5i_A Phosphoribosyl-aminoimi 97.2 0.001 3.4E-08 52.5 7.0 79 12-102 40-119 (403)
33 2yrx_A Phosphoribosylglycinami 97.1 0.00039 1.3E-08 55.0 4.4 50 49-102 67-119 (451)
34 3lp8_A Phosphoribosylamine-gly 97.1 0.00058 2E-08 54.7 5.2 49 50-102 68-119 (442)
35 3mjf_A Phosphoribosylamine--gl 97.0 0.00063 2.1E-08 54.2 4.1 50 49-102 51-103 (431)
36 3orq_A N5-carboxyaminoimidazol 96.8 0.0023 7.7E-08 49.8 5.8 78 12-102 28-106 (377)
37 1vkz_A Phosphoribosylamine--gl 96.3 0.00052 1.8E-08 53.8 -0.3 46 52-102 57-102 (412)
38 3i12_A D-alanine-D-alanine lig 96.0 0.0043 1.5E-07 48.1 3.1 40 63-102 96-136 (364)
39 2fb9_A D-alanine:D-alanine lig 94.6 0.013 4.4E-07 44.5 1.9 40 63-102 74-114 (322)
40 3e5n_A D-alanine-D-alanine lig 94.6 0.0095 3.2E-07 47.0 1.1 40 63-102 115-155 (386)
41 3eth_A Phosphoribosylaminoimid 94.5 0.018 6.1E-07 45.3 2.5 34 65-102 42-75 (355)
42 1ehi_A LMDDL2, D-alanine:D-lac 94.4 0.022 7.6E-07 44.3 2.9 40 63-102 91-131 (377)
43 2z04_A Phosphoribosylaminoimid 94.2 0.018 6.2E-07 43.7 1.8 71 12-102 17-88 (365)
44 2d59_A Hypothetical protein PH 93.9 0.095 3.3E-06 36.0 5.0 43 54-98 90-132 (144)
45 2i87_A D-alanine-D-alanine lig 93.7 0.023 7.7E-07 43.6 1.6 41 62-102 84-125 (364)
46 3lwb_A D-alanine--D-alanine li 93.6 0.024 8.1E-07 44.4 1.5 38 65-102 109-147 (373)
47 3ff4_A Uncharacterized protein 93.4 0.084 2.9E-06 36.1 3.9 40 54-95 71-110 (122)
48 2duw_A Putative COA-binding pr 93.3 0.18 6E-06 34.7 5.5 44 53-98 82-125 (145)
49 3se7_A VANA; alpha-beta struct 93.1 0.038 1.3E-06 42.2 1.9 40 63-102 88-128 (346)
50 3ln7_A Glutathione biosynthesi 92.9 0.0043 1.5E-07 54.1 -4.1 42 52-98 433-474 (757)
51 1iuk_A Hypothetical protein TT 92.8 0.083 2.8E-06 36.3 3.3 43 54-98 83-125 (140)
52 1y81_A Conserved hypothetical 92.4 0.22 7.6E-06 34.1 5.0 43 54-98 82-124 (138)
53 3r5x_A D-alanine--D-alanine li 92.3 0.066 2.3E-06 39.4 2.3 41 62-102 52-93 (307)
54 3tqt_A D-alanine--D-alanine li 91.9 0.1 3.6E-06 41.0 3.1 39 64-102 97-136 (372)
55 1iow_A DD-ligase, DDLB, D-ALA\ 90.4 0.35 1.2E-05 35.1 4.5 39 64-102 53-92 (306)
56 1uc8_A LYSX, lysine biosynthes 89.9 0.45 1.5E-05 33.8 4.7 36 64-101 47-83 (280)
57 4eg0_A D-alanine--D-alanine li 89.5 0.48 1.6E-05 35.3 4.8 41 62-102 62-103 (317)
58 2pvp_A D-alanine-D-alanine lig 87.0 0.38 1.3E-05 37.5 2.9 38 65-102 107-145 (367)
59 2nu8_A Succinyl-COA ligase [AD 84.8 1.9 6.4E-05 32.7 5.7 44 54-98 77-123 (288)
60 1e4e_A Vancomycin/teicoplanin 84.1 0.44 1.5E-05 36.0 1.9 40 63-102 88-128 (343)
61 3k3p_A D-alanine--D-alanine li 84.0 0.63 2.2E-05 36.7 2.8 38 65-102 119-157 (383)
62 2yv1_A Succinyl-COA ligase [AD 82.5 1.7 6E-05 33.1 4.7 45 54-98 83-129 (294)
63 2fp4_A Succinyl-COA ligase [GD 81.0 2.5 8.4E-05 32.6 5.1 44 54-98 84-131 (305)
64 2yv2_A Succinyl-COA synthetase 80.2 3.3 0.00011 31.6 5.5 45 54-98 84-130 (297)
65 2csu_A 457AA long hypothetical 76.7 2.5 8.5E-05 34.2 4.1 45 54-98 77-129 (457)
66 3ks6_A Glycerophosphoryl diest 75.8 4.2 0.00014 29.8 4.8 37 55-93 171-207 (250)
67 3vnd_A TSA, tryptophan synthas 74.7 3.2 0.00011 31.7 4.0 49 50-98 102-159 (267)
68 3m47_A Orotidine 5'-phosphate 73.1 1.6 5.6E-05 32.2 2.0 42 50-91 20-65 (228)
69 1rpx_A Protein (ribulose-phosp 72.7 6.1 0.00021 28.1 4.9 39 54-92 80-120 (230)
70 1tqj_A Ribulose-phosphate 3-ep 72.5 3.1 0.0001 30.5 3.3 39 54-92 74-114 (230)
71 1geq_A Tryptophan synthase alp 72.2 2.3 8E-05 30.5 2.6 38 55-92 98-135 (248)
72 1oi7_A Succinyl-COA synthetase 71.5 4.5 0.00015 30.7 4.2 45 54-98 77-123 (288)
73 2o55_A Putative glycerophospho 70.0 5.4 0.00019 29.0 4.2 36 57-94 181-216 (258)
74 2otd_A Glycerophosphodiester p 68.7 5.8 0.0002 28.7 4.1 36 57-94 176-211 (247)
75 2g0t_A Conserved hypothetical 68.3 3.7 0.00013 32.7 3.2 40 56-95 110-149 (350)
76 2pz0_A Glycerophosphoryl diest 68.3 6.3 0.00022 28.7 4.2 36 57-94 180-215 (252)
77 3tha_A Tryptophan synthase alp 66.5 7.7 0.00026 29.6 4.5 43 54-97 105-151 (252)
78 2gjl_A Hypothetical protein PA 66.4 8.7 0.0003 29.0 4.8 38 54-94 85-122 (328)
79 2v82_A 2-dehydro-3-deoxy-6-pho 65.4 11 0.00037 26.4 4.9 34 56-93 71-104 (212)
80 3vjz_A DMP19, putative unchara 65.2 0.57 1.9E-05 34.5 -2.0 26 66-92 65-91 (166)
81 3qvq_A Phosphodiesterase OLEI0 63.5 8.3 0.00028 28.1 4.1 36 56-93 178-213 (252)
82 3l12_A Putative glycerophospho 63.4 8.9 0.0003 28.9 4.3 36 57-94 237-272 (313)
83 3nav_A Tryptophan synthase alp 62.3 13 0.00045 28.3 5.2 44 54-98 114-161 (271)
84 2qbu_A Precorrin-2 methyltrans 61.4 30 0.001 24.3 6.7 14 16-29 91-104 (232)
85 1qop_A Tryptophan synthase alp 61.0 9.3 0.00032 28.4 4.0 43 55-97 112-157 (268)
86 2ekc_A AQ_1548, tryptophan syn 60.8 5.6 0.00019 29.6 2.8 42 55-97 112-157 (262)
87 1ujp_A Tryptophan synthase alp 60.6 12 0.0004 28.4 4.6 42 55-97 109-154 (271)
88 3kws_A Putative sugar isomeras 60.1 17 0.00057 26.0 5.1 25 53-77 105-131 (287)
89 1h1y_A D-ribulose-5-phosphate 60.0 10 0.00034 27.2 3.9 39 55-93 77-116 (228)
90 3ngf_A AP endonuclease, family 59.7 18 0.0006 25.7 5.2 44 52-95 23-66 (269)
91 2xsa_A Ogoga, hyaluronoglucosa 58.2 9.2 0.00031 31.8 3.9 36 53-88 59-98 (447)
92 3exr_A RMPD (hexulose-6-phosph 58.0 4.8 0.00016 29.4 1.9 40 50-89 13-55 (221)
93 1vd6_A Glycerophosphoryl diest 57.8 6.4 0.00022 28.1 2.6 33 59-93 157-189 (224)
94 1fmt_A Methionyl-tRNA FMet for 57.1 33 0.0011 26.4 6.7 64 10-75 17-92 (314)
95 2e0n_A Precorrin-2 C20-methylt 56.7 34 0.0012 24.8 6.4 13 17-29 94-106 (259)
96 3s83_A Ggdef family protein; s 55.5 15 0.00052 26.2 4.3 37 54-94 198-234 (259)
97 1k77_A EC1530, hypothetical pr 55.4 17 0.00058 25.3 4.4 43 52-94 15-57 (260)
98 2r6o_A Putative diguanylate cy 55.3 19 0.00066 26.9 5.0 37 54-94 222-258 (294)
99 3cny_A Inositol catabolism pro 55.3 18 0.00063 25.6 4.7 44 51-95 30-73 (301)
100 1wbh_A KHG/KDPG aldolase; lyas 55.0 12 0.00042 27.2 3.7 39 51-94 75-113 (214)
101 3ch0_A Glycerophosphodiester p 54.5 12 0.00041 27.2 3.6 36 57-94 203-240 (272)
102 3bo9_A Putative nitroalkan dio 54.1 21 0.00073 27.2 5.1 39 53-94 90-128 (326)
103 2obn_A Hypothetical protein; s 54.1 9.8 0.00033 30.3 3.3 48 47-95 83-132 (349)
104 3m0z_A Putative aldolase; MCSG 53.9 14 0.00047 28.8 4.0 72 23-97 118-193 (249)
105 3kzp_A LMO0111 protein, putati 53.7 8.7 0.0003 26.9 2.6 37 53-93 187-223 (235)
106 1mxs_A KDPG aldolase; 2-keto-3 53.5 15 0.00051 27.0 4.0 77 13-94 45-123 (225)
107 3vni_A Xylose isomerase domain 52.6 28 0.00094 24.7 5.2 21 54-74 90-114 (294)
108 1vhc_A Putative KHG/KDPG aldol 51.8 19 0.00064 26.5 4.3 39 51-94 76-114 (224)
109 3tlq_A Regulatory protein YDIV 51.8 14 0.0005 26.4 3.6 37 54-94 187-223 (242)
110 3lmz_A Putative sugar isomeras 51.7 34 0.0012 24.0 5.6 43 52-94 30-78 (257)
111 4hjf_A Ggdef family protein; s 50.1 17 0.00059 27.8 4.1 40 51-94 268-307 (340)
112 1zcc_A Glycerophosphodiester p 49.7 7.3 0.00025 28.4 1.8 36 57-93 162-197 (248)
113 4f3h_A Fimxeal, putative uncha 49.5 15 0.00052 26.1 3.4 40 51-94 199-238 (250)
114 2r85_A PURP protein PF1517; AT 48.9 7.7 0.00026 28.2 1.8 78 12-101 17-95 (334)
115 2zxd_A Alpha-L-fucosidase, put 48.7 31 0.0011 28.1 5.5 44 51-94 104-169 (455)
116 2fli_A Ribulose-phosphate 3-ep 48.5 15 0.00052 25.5 3.3 39 54-92 73-111 (220)
117 3bzy_B ESCU; auto cleavage pro 47.7 21 0.00073 22.9 3.6 26 54-87 29-54 (83)
118 1rd5_A Tryptophan synthase alp 47.7 19 0.00064 26.2 3.7 39 59-97 112-153 (262)
119 2vws_A YFAU, 2-keto-3-deoxy su 47.7 21 0.00073 26.6 4.1 39 54-97 199-237 (267)
120 3no3_A Glycerophosphodiester p 47.6 6 0.0002 28.8 1.0 35 59-93 165-199 (238)
121 3kws_A Putative sugar isomeras 47.3 22 0.00075 25.3 4.0 43 52-94 38-81 (287)
122 3ecd_A Serine hydroxymethyltra 47.1 28 0.00095 25.6 4.6 44 51-94 158-204 (425)
123 2vt1_B Surface presentation of 46.9 22 0.00074 23.4 3.6 26 54-87 29-54 (93)
124 3nvt_A 3-deoxy-D-arabino-heptu 46.7 13 0.00043 29.9 2.9 45 49-94 153-210 (385)
125 3q0i_A Methionyl-tRNA formyltr 46.2 58 0.002 25.1 6.5 63 11-75 22-96 (318)
126 2v5j_A 2,4-dihydroxyhept-2-ENE 46.0 22 0.00074 27.1 4.0 39 54-97 220-258 (287)
127 3k2g_A Resiniferatoxin-binding 45.9 20 0.00067 28.1 3.8 41 14-75 94-135 (364)
128 2yw3_A 4-hydroxy-2-oxoglutarat 45.8 18 0.00061 26.0 3.3 39 51-94 70-108 (207)
129 1o1z_A GDPD, glycerophosphodie 45.6 7 0.00024 28.3 1.1 36 58-93 161-201 (234)
130 3hh1_A Tetrapyrrole methylase 45.6 37 0.0013 21.9 4.6 13 55-67 98-110 (117)
131 1vli_A Spore coat polysacchari 44.9 25 0.00084 28.5 4.3 47 49-95 41-119 (385)
132 3tqq_A Methionyl-tRNA formyltr 44.8 69 0.0024 24.6 6.8 62 12-75 18-91 (314)
133 2q02_A Putative cytoplasmic pr 44.4 34 0.0012 23.8 4.6 41 53-93 20-67 (272)
134 3ajx_A 3-hexulose-6-phosphate 43.9 9.9 0.00034 26.3 1.6 39 51-89 9-50 (207)
135 3hv8_A Protein FIMX; EAL phosp 43.8 28 0.00097 24.9 4.2 38 53-94 210-247 (268)
136 3u0h_A Xylose isomerase domain 43.6 19 0.00065 25.2 3.1 43 52-94 16-64 (281)
137 3sy8_A ROCR; TIM barrel phosph 43.0 26 0.0009 26.7 4.1 38 53-94 334-371 (400)
138 3pjx_A Cyclic dimeric GMP bind 42.9 32 0.0011 26.4 4.6 38 53-94 381-418 (430)
139 3qja_A IGPS, indole-3-glycerol 42.7 20 0.00067 27.2 3.3 36 58-93 128-165 (272)
140 3f4w_A Putative hexulose 6 pho 42.6 19 0.00064 25.0 2.9 13 58-70 70-82 (211)
141 1i60_A IOLI protein; beta barr 42.4 24 0.00083 24.5 3.5 43 52-94 14-63 (278)
142 1dxe_A 2-dehydro-3-deoxy-galac 42.1 32 0.0011 25.3 4.3 40 54-98 199-238 (256)
143 3df7_A Putative ATP-grAsp supe 41.6 14 0.00049 27.5 2.3 45 55-102 61-106 (305)
144 3tva_A Xylose isomerase domain 40.8 52 0.0018 23.3 5.1 20 54-73 104-125 (290)
145 3ndc_A Precorrin-4 C(11)-methy 40.8 71 0.0024 23.5 6.0 15 15-29 72-86 (264)
146 3qz6_A HPCH/HPAI aldolase; str 40.5 12 0.00042 28.0 1.8 37 54-95 197-234 (261)
147 3mwd_B ATP-citrate synthase; A 40.4 14 0.00048 29.1 2.2 45 54-98 93-139 (334)
148 2z6i_A Trans-2-enoyl-ACP reduc 40.1 30 0.001 26.2 4.0 38 54-94 77-114 (332)
149 3vup_A Beta-1,4-mannanase; TIM 40.0 18 0.00062 25.2 2.5 42 53-94 43-107 (351)
150 3m6y_A 4-hydroxy-2-oxoglutarat 39.9 23 0.00079 27.9 3.3 71 23-97 140-216 (275)
151 1wa3_A 2-keto-3-deoxy-6-phosph 39.8 41 0.0014 23.1 4.4 39 51-94 70-108 (205)
152 2bas_A YKUI protein; EAL domai 39.7 35 0.0012 26.8 4.4 37 54-94 216-252 (431)
153 3cin_A MYO-inositol-1-phosphat 39.7 42 0.0014 27.2 5.0 46 54-99 177-222 (394)
154 2yb1_A Amidohydrolase; HET: AM 39.5 51 0.0017 24.5 5.1 43 49-94 14-60 (292)
155 3gbx_A Serine hydroxymethyltra 39.4 46 0.0016 24.3 4.8 43 52-94 156-201 (420)
156 2iuy_A Avigt4, glycosyltransfe 39.2 40 0.0014 24.1 4.4 49 49-99 172-222 (342)
157 4ggi_A UDP-2,3-diacylglucosami 39.0 32 0.0011 26.0 4.0 53 46-98 221-279 (283)
158 3c01_E Surface presentation of 38.9 30 0.001 22.9 3.3 26 54-87 29-54 (98)
159 3dx5_A Uncharacterized protein 38.9 52 0.0018 23.2 4.8 22 53-74 85-108 (286)
160 3bfj_A 1,3-propanediol oxidore 38.9 26 0.00089 27.1 3.5 56 15-70 28-97 (387)
161 1cbf_A Cobalt-precorrin-4 tran 38.8 64 0.0022 23.8 5.5 12 18-29 92-103 (285)
162 3gfz_A Klebsiella pneumoniae B 38.8 32 0.0011 27.0 4.1 38 53-94 349-386 (413)
163 3dmy_A Protein FDRA; predicted 38.7 26 0.00088 29.0 3.6 45 54-98 49-94 (480)
164 3t7y_A YOP proteins translocat 38.7 30 0.001 22.9 3.3 26 54-87 44-69 (97)
165 1m3u_A 3-methyl-2-oxobutanoate 38.2 48 0.0016 25.5 4.8 42 50-94 89-134 (264)
166 2p10_A MLL9387 protein; putati 38.0 44 0.0015 26.3 4.6 46 46-93 102-149 (286)
167 3obe_A Sugar phosphate isomera 37.9 60 0.002 23.8 5.2 42 53-94 37-93 (305)
168 3l23_A Sugar phosphate isomera 37.9 37 0.0013 24.8 4.1 43 52-94 29-76 (303)
169 1o4w_A PIN (PILT N-terminus) d 37.7 42 0.0014 22.2 4.0 39 54-99 100-138 (147)
170 2ffi_A 2-pyrone-4,6-dicarboxyl 37.7 52 0.0018 23.3 4.7 39 52-90 40-80 (288)
171 2g0b_A FEEM; N-acyl transferas 37.5 24 0.00081 25.1 2.9 40 54-98 124-163 (198)
172 1vlj_A NADH-dependent butanol 37.1 29 0.00098 27.2 3.5 56 15-70 38-106 (407)
173 4e16_A Precorrin-4 C(11)-methy 36.9 75 0.0026 23.0 5.6 14 16-29 74-87 (253)
174 3ox4_A Alcohol dehydrogenase 2 36.7 21 0.00072 27.9 2.7 55 16-70 27-93 (383)
175 2grg_A Hypothetical protein; Y 36.4 15 0.0005 25.7 1.5 16 14-29 91-106 (120)
176 1yx1_A Hypothetical protein PA 36.3 31 0.001 24.3 3.3 40 54-93 25-67 (264)
177 1s4d_A Uroporphyrin-III C-meth 36.0 68 0.0023 23.7 5.3 14 16-29 89-102 (280)
178 2bln_A Protein YFBG; transfera 35.9 83 0.0028 24.0 5.9 62 11-74 15-85 (305)
179 1yx1_A Hypothetical protein PA 35.5 51 0.0017 23.2 4.3 42 52-93 84-128 (264)
180 2wvv_A Alpha-L-fucosidase; alp 35.4 60 0.002 26.2 5.2 45 50-94 76-142 (450)
181 4e38_A Keto-hydroxyglutarate-a 35.1 40 0.0014 25.2 3.9 40 50-94 92-131 (232)
182 1rrm_A Lactaldehyde reductase; 34.9 29 0.001 26.7 3.2 56 15-70 26-93 (386)
183 2yxo_A Histidinol phosphatase; 34.7 74 0.0025 22.3 5.1 20 50-69 14-33 (267)
184 2jz7_A Selenium binding protei 34.6 26 0.0009 22.8 2.4 24 54-78 37-60 (81)
185 3ovg_A Amidohydrolase; structu 34.6 45 0.0015 26.2 4.3 39 11-69 54-96 (363)
186 2lcq_A Putative toxin VAPC6; P 34.5 57 0.002 22.2 4.4 40 54-101 86-125 (165)
187 2wqp_A Polysialic acid capsule 34.5 60 0.002 25.8 5.0 47 48-94 31-108 (349)
188 2r7k_A 5-formaminoimidazole-4- 34.2 21 0.00072 27.9 2.3 78 12-101 33-119 (361)
189 4i6k_A Amidohydrolase family p 33.4 1.3E+02 0.0044 21.8 6.4 39 52-90 53-93 (294)
190 3p6l_A Sugar phosphate isomera 33.3 55 0.0019 22.8 4.2 39 52-93 91-131 (262)
191 1ve2_A Uroporphyrin-III C-meth 33.0 97 0.0033 21.9 5.5 40 16-73 75-115 (235)
192 3bw2_A 2-nitropropane dioxygen 32.9 76 0.0026 24.3 5.3 38 53-92 110-147 (369)
193 1muw_A Xylose isomerase; atomi 32.3 23 0.00077 27.2 2.2 46 48-93 29-85 (386)
194 2vzs_A CSXA, EXO-beta-D-glucos 32.0 48 0.0016 29.5 4.4 40 54-95 376-415 (1032)
195 2g0w_A LMO2234 protein; putati 31.9 47 0.0016 23.9 3.7 43 52-94 36-85 (296)
196 3qxb_A Putative xylose isomera 31.5 71 0.0024 23.1 4.7 41 54-94 37-87 (316)
197 1iv0_A Hypothetical protein; r 31.2 66 0.0022 20.7 4.0 39 52-90 38-85 (98)
198 3n0l_A Serine hydroxymethyltra 31.0 59 0.002 23.7 4.2 43 52-94 151-196 (417)
199 3inp_A D-ribulose-phosphate 3- 31.0 50 0.0017 24.7 3.8 42 51-92 95-136 (246)
200 1q6o_A Humps, 3-keto-L-gulonat 30.8 21 0.00071 25.3 1.6 39 51-89 12-53 (216)
201 2qul_A D-tagatose 3-epimerase; 30.7 43 0.0015 23.5 3.3 44 52-95 17-65 (290)
202 1mzh_A Deoxyribose-phosphate a 30.7 60 0.002 23.4 4.1 38 50-87 127-169 (225)
203 1ub3_A Aldolase protein; schif 30.6 16 0.00055 27.0 1.0 36 37-73 5-42 (220)
204 2xz9_A Phosphoenolpyruvate-pro 30.5 52 0.0018 25.5 4.0 44 54-99 236-279 (324)
205 1j5p_A Aspartate dehydrogenase 30.5 51 0.0018 25.0 3.8 45 53-98 72-120 (253)
206 2yxb_A Coenzyme B12-dependent 30.4 90 0.0031 21.3 4.9 37 52-90 56-97 (161)
207 1ka9_F Imidazole glycerol phos 30.4 27 0.00092 24.7 2.1 40 51-90 83-122 (252)
208 3rfo_A Methionyl-tRNA formyltr 30.1 1E+02 0.0036 23.7 5.6 62 12-75 20-93 (317)
209 1h5y_A HISF; histidine biosynt 29.8 30 0.001 23.9 2.3 40 51-91 86-125 (253)
210 2dkj_A Serine hydroxymethyltra 29.8 55 0.0019 23.8 3.8 45 50-94 148-195 (407)
211 1meo_A Phosophoribosylglycinam 29.6 60 0.0021 23.5 4.0 67 10-78 12-94 (209)
212 1wyz_A Putative S-adenosylmeth 29.3 92 0.0031 22.4 4.9 14 14-27 78-91 (242)
213 1va0_A Uroporphyrin-III C-meth 29.1 1.4E+02 0.0047 21.1 5.8 41 16-74 72-113 (239)
214 2h6r_A Triosephosphate isomera 28.9 26 0.00087 25.3 1.8 42 58-99 75-123 (219)
215 2zvr_A Uncharacterized protein 28.5 32 0.0011 24.5 2.3 41 53-93 42-84 (290)
216 3mmz_A Putative HAD family hyd 28.4 1E+02 0.0035 20.5 4.8 75 12-95 48-127 (176)
217 3qkb_A Uncharacterized protein 28.4 37 0.0013 23.4 2.4 17 54-70 64-80 (111)
218 2ofk_A 3-methyladenine DNA gly 28.3 10 0.00034 28.1 -0.5 18 81-98 144-161 (183)
219 3tsm_A IGPS, indole-3-glycerol 28.3 78 0.0027 24.0 4.6 42 51-92 128-171 (272)
220 3qja_A IGPS, indole-3-glycerol 28.2 55 0.0019 24.7 3.7 53 7-71 39-91 (272)
221 2ybo_A Methyltransferase; SUMT 28.2 1.8E+02 0.0063 21.6 6.7 14 16-29 99-112 (294)
222 2jg6_A DNA-3-methyladenine gly 28.1 12 0.00039 27.8 -0.2 18 81-98 144-161 (186)
223 1oy0_A Ketopantoate hydroxymet 28.1 51 0.0017 25.6 3.5 44 49-94 105-153 (281)
224 2yx6_A Hypothetical protein PH 28.0 1.2E+02 0.0041 19.3 5.2 36 56-95 54-89 (121)
225 1hw6_A 2,5-diketo-D-gluconic a 27.9 84 0.0029 23.1 4.6 13 55-67 171-183 (278)
226 1vr4_A Hypothetical protein AP 27.9 39 0.0013 22.3 2.4 17 54-70 62-78 (103)
227 3dcp_A Histidinol-phosphatase; 27.6 85 0.0029 23.4 4.6 45 54-98 207-259 (283)
228 1qtw_A Endonuclease IV; DNA re 27.6 1.5E+02 0.0053 20.5 5.9 22 54-75 91-114 (285)
229 3bzs_A ESCU; auto cleavage pro 27.5 56 0.0019 22.9 3.3 26 54-87 83-108 (137)
230 3ovp_A Ribulose-phosphate 3-ep 27.4 51 0.0018 24.0 3.3 41 52-92 74-114 (228)
231 2zds_A Putative DNA-binding pr 27.3 67 0.0023 23.1 3.9 43 52-94 15-68 (340)
232 3mil_A Isoamyl acetate-hydroly 27.2 57 0.002 21.8 3.3 25 53-77 101-125 (240)
233 2wzm_A Aldo-keto reductase; ox 27.0 90 0.0031 23.1 4.6 37 55-91 179-218 (283)
234 3jzd_A Iron-containing alcohol 26.9 47 0.0016 25.8 3.2 52 15-70 31-94 (358)
235 2jli_A YSCU, YOP proteins tran 26.9 59 0.002 22.3 3.3 26 54-87 73-98 (123)
236 3m0z_A Putative aldolase; MCSG 26.8 33 0.0011 26.6 2.2 24 50-73 197-220 (249)
237 3eo4_A Uncharacterized protein 26.7 1E+02 0.0034 19.0 4.2 44 54-99 112-155 (164)
238 2ob3_A Parathion hydrolase; me 26.6 1.4E+02 0.0047 22.3 5.7 37 56-92 177-215 (330)
239 3qc0_A Sugar isomerase; TIM ba 26.5 38 0.0013 23.5 2.3 43 52-94 18-62 (275)
240 1f76_A Dihydroorotate dehydrog 26.5 22 0.00075 26.8 1.1 36 51-87 298-333 (336)
241 3cqj_A L-ribulose-5-phosphate 26.1 51 0.0018 23.4 3.0 43 52-94 30-83 (295)
242 1w8s_A FBP aldolase, fructose- 26.1 8.7 0.0003 28.7 -1.2 25 49-73 38-64 (263)
243 3dr6_A YNCA; acetyltransferase 26.0 1.1E+02 0.0037 18.4 4.2 42 54-97 104-145 (174)
244 2q0q_A ARYL esterase; SGNH hyd 25.8 45 0.0016 22.0 2.6 42 53-94 110-180 (216)
245 2oz8_A MLL7089 protein; struct 25.8 45 0.0016 25.7 2.9 44 49-94 251-294 (389)
246 1fob_A Beta-1,4-galactanase; B 25.7 52 0.0018 25.1 3.1 39 56-94 31-77 (334)
247 3nkl_A UDP-D-quinovosamine 4-d 25.5 73 0.0025 20.2 3.4 45 54-98 54-101 (141)
248 2jlj_A YSCU, YOP proteins tran 25.4 63 0.0022 22.8 3.3 26 54-87 82-107 (144)
249 1xla_A D-xylose isomerase; iso 25.3 45 0.0016 25.6 2.8 46 48-93 29-85 (394)
250 3m6y_A 4-hydroxy-2-oxoglutarat 25.2 38 0.0013 26.7 2.3 24 50-73 220-243 (275)
251 3ctl_A D-allulose-6-phosphate 25.0 54 0.0018 24.1 3.0 40 53-92 68-108 (231)
252 4aie_A Glucan 1,6-alpha-glucos 24.8 31 0.0011 26.9 1.8 17 12-28 38-54 (549)
253 3gon_A Phosphomevalonate kinas 24.6 48 0.0017 24.0 2.7 40 54-93 274-323 (335)
254 3uhj_A Probable glycerol dehyd 24.6 38 0.0013 26.7 2.2 55 14-70 47-111 (387)
255 1a62_A RHO; transcription term 24.5 17 0.00059 24.9 0.2 10 68-77 56-66 (130)
256 3kwp_A Predicted methyltransfe 24.4 1.4E+02 0.0047 22.6 5.3 14 16-29 85-99 (296)
257 3rxz_A Polysaccharide deacetyl 24.3 44 0.0015 24.7 2.4 41 52-92 62-103 (300)
258 1ass_A Thermosome; chaperonin, 24.2 1.7E+02 0.0058 20.1 5.4 38 55-95 62-99 (159)
259 2czd_A Orotidine 5'-phosphate 24.1 17 0.00059 25.6 0.1 40 50-89 7-49 (208)
260 4eyg_A Twin-arginine transloca 24.1 60 0.0021 23.2 3.1 44 52-97 181-230 (368)
261 3iv7_A Alcohol dehydrogenase I 24.0 32 0.0011 26.9 1.7 56 14-70 31-93 (364)
262 1jcn_A Inosine monophosphate d 23.9 73 0.0025 25.5 3.8 37 53-89 255-293 (514)
263 1vhn_A Putative flavin oxidore 23.8 70 0.0024 24.0 3.5 39 49-88 190-228 (318)
264 1vp5_A 2,5-diketo-D-gluconic a 23.5 1.2E+02 0.0042 22.7 4.8 13 55-67 184-196 (298)
265 1o2d_A Alcohol dehydrogenase, 23.4 45 0.0015 25.7 2.4 25 46-70 79-103 (371)
266 3sc6_A DTDP-4-dehydrorhamnose 23.4 1.9E+02 0.0064 20.0 6.3 44 51-94 42-102 (287)
267 3qy7_A Tyrosine-protein phosph 23.4 87 0.003 23.1 3.9 46 48-93 112-160 (262)
268 3aam_A Endonuclease IV, endoiv 23.4 91 0.0031 21.8 3.9 21 54-74 90-112 (270)
269 3ues_A Alpha-1,3/4-fucosidase; 23.4 1.4E+02 0.0048 24.5 5.5 45 50-94 60-129 (478)
270 2oh1_A Acetyltransferase, GNAT 23.3 1.3E+02 0.0043 18.5 4.2 41 54-96 125-165 (179)
271 4g9b_A Beta-PGM, beta-phosphog 23.0 42 0.0014 23.2 2.0 21 57-77 178-198 (243)
272 1vs1_A 3-deoxy-7-phosphoheptul 23.0 44 0.0015 25.5 2.2 46 49-94 49-106 (276)
273 2e9x_C GINS complex subunit 3; 22.9 29 0.00099 25.7 1.2 30 49-78 20-53 (219)
274 3qbu_A Putative uncharacterize 22.8 50 0.0017 24.9 2.5 42 53-95 75-117 (326)
275 3lzd_A DPH2; diphthamide biosy 22.7 98 0.0033 24.9 4.3 57 14-78 49-120 (378)
276 2xz8_A Peptidoglycan-recogniti 22.7 22 0.00074 25.1 0.4 16 87-102 99-114 (150)
277 1o66_A 3-methyl-2-oxobutanoate 22.6 1E+02 0.0036 23.8 4.3 43 49-94 88-135 (275)
278 1z7e_A Protein aRNA; rossmann 22.5 1.3E+02 0.0046 24.4 5.2 67 10-77 14-89 (660)
279 3cmg_A Putative beta-galactosi 22.5 1.1E+02 0.0036 25.5 4.7 39 53-94 305-344 (667)
280 1v5x_A PRA isomerase, phosphor 22.3 1.4E+02 0.0049 21.4 4.9 31 53-86 63-93 (203)
281 1djl_A Transhydrogenase DIII; 22.2 48 0.0016 25.1 2.3 42 52-93 33-79 (207)
282 3hl0_A Maleylacetate reductase 22.2 58 0.002 25.2 2.8 52 15-70 29-92 (353)
283 2r7h_A Putative D-alanine N-ac 22.1 1.2E+02 0.0042 18.6 4.0 43 54-96 116-158 (177)
284 1nsj_A PRAI, phosphoribosyl an 22.1 1.5E+02 0.005 21.3 4.9 32 53-87 64-95 (205)
285 2vi8_A Serine hydroxymethyltra 22.0 1.4E+02 0.0047 21.6 4.7 45 50-94 148-195 (405)
286 1ynp_A Oxidoreductase, AKR11C1 21.9 82 0.0028 23.6 3.6 46 53-98 172-218 (317)
287 4e0a_A BH1408 protein; structu 21.9 1.4E+02 0.0047 17.9 4.2 40 54-95 110-149 (164)
288 3hvb_A Protein FIMX; EAL phosp 21.9 97 0.0033 23.7 4.0 38 53-94 379-416 (437)
289 1sgj_A Citrate lyase, beta sub 21.7 1.3E+02 0.0046 22.1 4.7 43 54-96 175-222 (284)
290 2jlm_A Putative phosphinothric 21.6 1.3E+02 0.0046 19.3 4.2 41 54-96 112-152 (182)
291 4h41_A Putative alpha-L-fucosi 21.5 51 0.0017 26.0 2.4 60 12-75 60-122 (340)
292 1vc4_A Indole-3-glycerol phosp 21.4 1.6E+02 0.0056 21.6 5.1 72 8-92 34-108 (254)
293 2fsv_C NAD(P) transhydrogenase 21.4 51 0.0017 24.9 2.3 42 52-93 34-80 (203)
294 1owl_A Photolyase, deoxyribodi 21.4 53 0.0018 26.4 2.6 42 54-95 81-126 (484)
295 1us0_A Aldose reductase; oxido 21.2 1E+02 0.0035 22.9 4.0 17 51-67 190-206 (316)
296 2fia_A Acetyltransferase; stru 21.2 1.4E+02 0.0048 17.7 4.1 41 54-96 97-137 (162)
297 1zco_A 2-dehydro-3-deoxyphosph 21.1 63 0.0021 24.2 2.8 45 50-94 35-91 (262)
298 2aaa_A Alpha-amylase; glycosid 21.1 39 0.0013 26.6 1.6 27 68-94 89-115 (484)
299 3p94_A GDSL-like lipase; serin 21.1 1.6E+02 0.0054 19.0 4.5 43 52-94 101-159 (204)
300 2wfb_A Putative uncharacterize 21.0 1.5E+02 0.0051 18.8 4.3 36 56-95 58-93 (120)
301 1y2i_A Hypothetical protein S0 20.9 54 0.0018 22.8 2.2 17 54-70 86-102 (133)
302 2hk0_A D-psicose 3-epimerase; 20.9 60 0.0021 23.3 2.6 43 52-95 37-84 (309)
303 2a7v_A Serine hydroxymethyltra 20.9 1.5E+02 0.0051 23.8 5.1 45 50-94 188-235 (490)
304 1gml_A T-complex protein 1 sub 20.8 1.9E+02 0.0067 20.0 5.2 38 55-95 68-105 (178)
305 3eyp_A Putative alpha-L-fucosi 20.7 1.3E+02 0.0045 24.5 4.8 44 51-94 53-121 (469)
306 3skq_A Mitochondrial distribut 20.7 43 0.0015 25.8 1.8 51 51-102 97-172 (249)
307 3fbu_A Acetyltransferase, GNAT 20.7 1.5E+02 0.0053 18.0 4.6 41 54-96 104-145 (168)
308 3r8s_O 50S ribosomal protein L 20.7 72 0.0025 21.5 2.7 44 50-93 70-116 (116)
309 2nva_A Arginine decarboxylase, 20.5 80 0.0027 23.8 3.3 29 53-81 155-185 (372)
310 2fi0_A Conserved domain protei 20.5 1.2E+02 0.004 18.6 3.6 31 54-95 49-79 (81)
311 1d4o_A NADP(H) transhydrogenas 20.5 59 0.002 24.2 2.4 41 52-92 10-55 (184)
312 1u3d_A Cryptochrome 1 apoprote 20.4 48 0.0017 26.8 2.1 42 54-95 90-135 (509)
313 2j8m_A Acetyltransferase PA486 20.4 1.5E+02 0.0052 18.5 4.2 41 54-96 104-144 (172)
314 3vav_A 3-methyl-2-oxobutanoate 20.4 1.3E+02 0.0044 23.2 4.5 45 49-95 100-147 (275)
315 2bw0_A 10-FTHFDH, 10-formyltet 20.4 2.9E+02 0.0099 21.1 6.5 62 12-74 38-109 (329)
316 2npn_A Putative cobalamin synt 20.3 1E+02 0.0035 22.2 3.7 12 18-29 101-112 (251)
317 1lwj_A 4-alpha-glucanotransfer 20.3 44 0.0015 25.9 1.8 53 11-69 28-87 (441)
318 2wje_A CPS4B, tyrosine-protein 20.3 1.1E+02 0.0038 21.7 3.9 42 51-92 119-163 (247)
319 3rjt_A Lipolytic protein G-D-S 20.3 67 0.0023 20.9 2.5 43 52-94 117-172 (216)
320 3ln3_A Dihydrodiol dehydrogena 20.2 1.1E+02 0.0038 22.7 4.0 18 51-68 197-214 (324)
321 3e38_A Two-domain protein cont 20.2 1.1E+02 0.0037 23.9 4.0 46 49-94 31-89 (343)
322 1lqa_A TAS protein; TIM barrel 20.0 1E+02 0.0035 22.9 3.7 45 54-98 186-235 (346)
323 2q28_A Oxalyl-COA decarboxylas 20.0 1.8E+02 0.006 23.3 5.3 42 54-99 11-54 (564)
No 1
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.81 E-value=1.3e-20 Score=159.32 Aligned_cols=85 Identities=21% Similarity=0.397 Sum_probs=77.0
Q ss_pred cC-cEEEEeecccc-cccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 18 AG-TTIIILSKRKL-EDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 18 ~g-~tvai~t~~dl-~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.| +||||||+.|. +++.|+++||+...+ ++.++|+|++.|+++|++.++|+|||||||+|||+.|++.|+++||.
T Consensus 87 ~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~ 166 (587)
T 3jrx_A 87 RAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVA 166 (587)
T ss_dssp TSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCE
T ss_pred CCceEEEEecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCC
Confidence 38 99999998775 789999999986432 44579999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhc
Q psy6380 93 FIGPTTNVLK 102 (103)
Q Consensus 93 FIGP~~~~m~ 102 (103)
|+||++++|+
T Consensus 167 ~iGp~~~ai~ 176 (587)
T 3jrx_A 167 FLGPPSEAMW 176 (587)
T ss_dssp ESSCCHHHHH
T ss_pred eeCCCHHHHH
Confidence 9999999975
No 2
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.80 E-value=2.7e-20 Score=155.03 Aligned_cols=85 Identities=21% Similarity=0.397 Sum_probs=76.8
Q ss_pred cC-cEEEEeecccc-cccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 18 AG-TTIIILSKRKL-EDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 18 ~g-~tvai~t~~dl-~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.| +||||+|+.|. +++.|+++||+...+ ++.++|+|++.|+++|++.++|+|||||||+|||+.|++.|++.||.
T Consensus 71 ~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i~~~~~~~sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~ 150 (540)
T 3glk_A 71 RAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVA 150 (540)
T ss_dssp TSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCcccCcCChhHHhCCEEEEeCCCCcccccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCc
Confidence 38 99999997765 789999999996433 44579999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhc
Q psy6380 93 FIGPTTNVLK 102 (103)
Q Consensus 93 FIGP~~~~m~ 102 (103)
|+||++++++
T Consensus 151 ~iGp~~~ai~ 160 (540)
T 3glk_A 151 FLGPPSEAMW 160 (540)
T ss_dssp ESSCCHHHHC
T ss_pred eeCCCHHHHH
Confidence 9999999986
No 3
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.77 E-value=3.8e-19 Score=151.45 Aligned_cols=90 Identities=33% Similarity=0.508 Sum_probs=82.1
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|+|+++.| +++.|+++||+...+ ++..+|+|++.|+++|++.++|+|||||||||||+.|++.|+
T Consensus 44 iraar~lGi~~vav~s~~d-~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~le 122 (675)
T 3u9t_A 44 MRSARALGIGSVAVHSDID-RHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACE 122 (675)
T ss_dssp HHHHHHHTCEEEEEECSGG-GGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCCC-CCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEEeCCcccccCHHHHHHHH
Confidence 46789999 9999999999 899999999985432 345799999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 123 ~~Gi~~iGp~~~ai~ 137 (675)
T 3u9t_A 123 EAGLLFLGPPAAAID 137 (675)
T ss_dssp TTTCEESSCCHHHHH
T ss_pred HcCCceeCCCHHHHH
Confidence 999999999999885
No 4
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.77 E-value=2.4e-19 Score=152.78 Aligned_cols=90 Identities=26% Similarity=0.522 Sum_probs=82.6
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|+|+|+.| +++.|+++||+...+ ++..+|+|++.|+++|++.++|+|||||||||||+.|++.|+
T Consensus 18 iraar~lGi~~vav~sd~d-~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~le 96 (681)
T 3n6r_A 18 IKTARKMGISTVAIYSDAD-KQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALE 96 (681)
T ss_dssp HHHHGGGSCCBCCEECSTT-SSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHHHHTCCSCCBCCSSSSTTCHHHHHHHH
T ss_pred HHHHHHcCCEEEEEEcCCC-CCChhHHhCCEEEEcCCCCcccCccCHHHHHHHHHHhCcCEEEECCCccccCHHHHHHHH
Confidence 46889999 9999999999 999999999986332 445799999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
++|+.|+||++++++
T Consensus 97 ~~Gi~~iGp~~~ai~ 111 (681)
T 3n6r_A 97 AEGVIFVGPPKGAIE 111 (681)
T ss_dssp TTTCCCSSSCHHHHH
T ss_pred HcCCceECCCHHHHH
Confidence 999999999999885
No 5
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.70 E-value=2.5e-17 Score=147.58 Aligned_cols=90 Identities=38% Similarity=0.612 Sum_probs=82.2
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC----CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM----PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~----~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
..++++.| ++|+|++++| +.+.|.++||+.... .+..+|+|++.|+++|++.++|+|||||||||||+.|++.|
T Consensus 20 iraa~elGi~vVav~s~~d-~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~~~~a~~l 98 (1150)
T 3hbl_A 20 FRAAAELDISTVAIYSNED-KSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRC 98 (1150)
T ss_dssp HHHHHHTTCEEEEEECGGG-TTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTCHHHHHHH
T ss_pred HHHHHHCCCEEEEEEcCCc-ccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccccHHHHHHH
Confidence 46899999 9999999999 889999999986432 34579999999999999999999999999999999999999
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
++.|+.|+||++++++
T Consensus 99 e~~Gi~~iGp~~eai~ 114 (1150)
T 3hbl_A 99 AEEGIKFIGPHLEHLD 114 (1150)
T ss_dssp HHTTCEESSSCHHHHH
T ss_pred HHCCCCeeCCCHHHHH
Confidence 9999999999999875
No 6
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.69 E-value=2.9e-17 Score=130.28 Aligned_cols=90 Identities=31% Similarity=0.573 Sum_probs=81.8
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCC---CCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGK---RMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~---~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|+|+++.| .++.+.++||+.. ..++..+|+|++.|+++|++.++|+|||||||+|||+.|++.|+
T Consensus 22 ~~aa~~~G~~~v~v~~~~~-~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e~~~~~~~~~ 100 (446)
T 3ouz_A 22 LRTIKEMGKKAICVYSEAD-KDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICA 100 (446)
T ss_dssp HHHHHHTTCEEEEEEEGGG-TTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHH
T ss_pred HHHHHHcCCEEEEEEcCcc-cccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEECCcccccCHHHHHHHH
Confidence 46899999 9999999988 8899999999853 22556799999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 101 ~~g~~~~g~~~~~~~ 115 (446)
T 3ouz_A 101 KHNIKFIGPSVEAMN 115 (446)
T ss_dssp HTTCEESSCCHHHHH
T ss_pred HCCCceECcCHHHHH
Confidence 999999999999875
No 7
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.64 E-value=2.4e-16 Score=142.40 Aligned_cols=90 Identities=28% Similarity=0.481 Sum_probs=82.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|+|+++.| .++.|+++||+...+ ++..+|+|++.|+++|++.++|+|||||||||||+.|++.|+
T Consensus 47 iraar~lGi~vVaV~s~~d-~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn~~~a~~le 125 (1236)
T 3va7_A 47 MKTLKRMGIKSVAVYSDPD-KYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCS 125 (1236)
T ss_dssp HHHHHHHTCEEEEEECSGG-GGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGCHHHHHHHH
T ss_pred HHHHHHCCCEEEEEEcCCC-cCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCccccccHHHHHHHH
Confidence 46899999 9999999999 889999999985322 456799999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 126 ~~Gi~~iGps~eai~ 140 (1236)
T 3va7_A 126 QENIVFVGPSGDAIR 140 (1236)
T ss_dssp TTTCEESSCCHHHHH
T ss_pred HCCCCeeCCCHHHHH
Confidence 999999999999875
No 8
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.64 E-value=1.1e-16 Score=143.44 Aligned_cols=90 Identities=31% Similarity=0.565 Sum_probs=80.6
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC----------CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM----------PPVAAYLNNPEIICIANNINVDAIHPGYGFLSERE 80 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~----------~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~ 80 (103)
..++++.| ++|+|++++| +.+.|.++||+.... .+..+|+|++.|+++|++.++|+|||||||+|||+
T Consensus 30 iraa~elGi~vvav~s~~d-~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE~~ 108 (1165)
T 2qf7_A 30 FRAANELGIKTVAIWAEED-KLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESP 108 (1165)
T ss_dssp HHHHHHTTCEEEEEECGGG-TTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEEECCSSTTTTCH
T ss_pred HHHHHHcCCEEEEEECCCc-ccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEEEECCCchhcCH
Confidence 46899999 9999999998 778889999985322 23468999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEeCCChhhhc
Q psy6380 81 DFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 81 ~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
.|++.|++.|+.|+||++++++
T Consensus 109 ~~a~~le~~Gi~~iGp~~~ai~ 130 (1165)
T 2qf7_A 109 EFVDACNKAGIIFIGPKADTMR 130 (1165)
T ss_dssp HHHHHHHHTTCEESSCCHHHHH
T ss_pred HHHHHHHHcCCceECCCHHHHH
Confidence 9999999999999999999875
No 9
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.53 E-value=7.7e-15 Score=120.76 Aligned_cols=90 Identities=23% Similarity=0.337 Sum_probs=77.2
Q ss_pred HHHHHc---------C-cEEEEeecccc-cccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCC
Q psy6380 13 DSLIQA---------G-TTIIILSKRKL-EDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSE 78 (103)
Q Consensus 13 ~~~~~~---------g-~tvai~t~~dl-~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSE 78 (103)
.++++. | ++|+|+|..|. .++.+.++||+.... .+.++|+|++.|+++|++.++|+|||||||+||
T Consensus 64 ra~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l~~~a~~~~id~Vi~g~G~~sE 143 (554)
T 1w96_A 64 RSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASE 143 (554)
T ss_dssp HHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTT
T ss_pred HHHHHcCCcceecccCceEEEEecccccccCChhhhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccc
Confidence 456666 5 78999997664 677788999985332 345699999999999999999999999999999
Q ss_pred CHHHHHHHHhCC--CeEeCCChhhhc
Q psy6380 79 REDFAKAVIGAA--LEFIGPTTNVLK 102 (103)
Q Consensus 79 n~~Fa~~~~~~g--i~FIGP~~~~m~ 102 (103)
++.|+..|++.| +.|+||++++++
T Consensus 144 ~~~~~~~l~~~g~~i~~~gp~~~a~~ 169 (554)
T 1w96_A 144 NPLLPEKLSQSKRKVIFIGPPGNAMR 169 (554)
T ss_dssp CTHHHHHHHHSTTCCEESSCCHHHHH
T ss_pred CHHHHHHHHHcCCeEEEeCCCHHHHH
Confidence 999999999999 999999998875
No 10
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.52 E-value=1.8e-14 Score=114.49 Aligned_cols=90 Identities=41% Similarity=0.602 Sum_probs=77.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCC----CCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRM----PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~----~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
..++++.| ++|++.++.+ ..+.+.+++|+.... .+..+|+|++.|+++|++.++|+|+||+||+||++.+++.|
T Consensus 22 ~~a~~~~G~~vv~v~~~~~-~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~~~~~~~~ 100 (461)
T 2dzd_A 22 FRACTELGIRTVAIYSKED-VGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRC 100 (461)
T ss_dssp HHHHHHHTCEEEEEECGGG-TTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTCHHHHHHH
T ss_pred HHHHHHcCCEEEEEECCcc-cccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHH
Confidence 46799999 8899998887 666778888874322 23467999999999999999999999999999999999999
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
++.|+.|+||++++++
T Consensus 101 ~~~gi~~~g~~~~~~~ 116 (461)
T 2dzd_A 101 REEGIIFIGPNENHLD 116 (461)
T ss_dssp HHTTCEESSCCHHHHH
T ss_pred HHcCCEEECCCHHHHH
Confidence 9999999999999875
No 11
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.47 E-value=4.8e-14 Score=111.43 Aligned_cols=90 Identities=38% Similarity=0.594 Sum_probs=77.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCC---CCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKR---MPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~---~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|++.++.+ .++.+.+++|+... .....+|+|.+.|+++|++.++|+|+|||||++|++.+++.|+
T Consensus 18 ~~a~~~~G~~vv~v~~~~~-~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~e 96 (449)
T 2w70_A 18 LRACKELGIKTVAVHSSAD-RDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVE 96 (449)
T ss_dssp HHHHHHHTCEEEEEEEGGG-TTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEECCSSTTTTCHHHHHHHH
T ss_pred HHHHHHcCCeEEEEecccc-ccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHH
Confidence 46789999 8899988877 55667788887422 1345689999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 97 ~~gi~~~g~~~~~~~ 111 (449)
T 2w70_A 97 RSGFIFIGPKAETIR 111 (449)
T ss_dssp HTTCEESSSCHHHHH
T ss_pred HcCCceECCCHHHHH
Confidence 999999999999875
No 12
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.46 E-value=3.8e-14 Score=112.04 Aligned_cols=90 Identities=36% Similarity=0.596 Sum_probs=77.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCC--CCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKR--MPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~--~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
..++++.| ++|++.++.+ .++.+.+++|+... .....+|+|.+.|+++|++.++|+|||||||++|++.+++.|++
T Consensus 18 ~~a~~~~G~~vv~v~~~~~-~~~~~~~~ad~~~~~~p~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~~~ 96 (451)
T 1ulz_A 18 IRACKELGIPTVAIYNEVE-STARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEE 96 (451)
T ss_dssp HHHHHHHTCCEEEEECGGG-TTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHHHTTCCEEECCSSTTTTCHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEechhh-cccchhhhCcEEEEcCCCcccccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHH
Confidence 46799999 9999998877 66677888887432 12445899999999999999999999999999999999999999
Q ss_pred CCCeEeCCChhhhc
Q psy6380 89 AALEFIGPTTNVLK 102 (103)
Q Consensus 89 ~gi~FIGP~~~~m~ 102 (103)
.|+.|+||++++++
T Consensus 97 ~gi~~~g~~~~~~~ 110 (451)
T 1ulz_A 97 AGITFIGPHWKVIE 110 (451)
T ss_dssp TTCEESSSCHHHHH
T ss_pred CCCeEECcCHHHHH
Confidence 99999999998875
No 13
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.46 E-value=8e-14 Score=110.19 Aligned_cols=90 Identities=33% Similarity=0.572 Sum_probs=77.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCC---CCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKR---MPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~---~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..++++.| ++|++.++.+ .++.+.+++|+... .....+|+|.+.|+++|++.++|+|+|||||++|++.+++.++
T Consensus 17 ~~a~~~~G~~vv~v~~~~~-~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~~ 95 (451)
T 2vpq_A 17 IRACRDLGIQTVAIYSEGD-KDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCE 95 (451)
T ss_dssp HHHHHHTTCEEEEEEEGGG-TTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCHHHHHHHH
T ss_pred HHHHHHcCCEEEEEecccc-cccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHH
Confidence 46789999 8999998877 66777788887432 1344789999999999999999999999999999999999999
Q ss_pred hCCCeEeCCChhhhc
Q psy6380 88 GAALEFIGPTTNVLK 102 (103)
Q Consensus 88 ~~gi~FIGP~~~~m~ 102 (103)
+.|+.|+||++++++
T Consensus 96 ~~gi~~~g~~~~~~~ 110 (451)
T 2vpq_A 96 ACQLKFIGPSYQSIQ 110 (451)
T ss_dssp TTTCEESSSCHHHHH
T ss_pred HcCCeEECCCHHHHH
Confidence 999999999998875
No 14
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.80 E-value=2.5e-09 Score=82.74 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=68.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..++++.| ++|++ +..+ .++.+.+++|+.... +|.|.+.|++++++.++|+|+|| |+.++...+++.+++.|
T Consensus 23 ~~a~~~~G~~~v~v-~~~~-~~~~~~~~ad~~~~~----~~~d~~~l~~~~~~~~~d~v~~~-~~~~~~~~~a~~~~~~g 95 (403)
T 4dim_A 23 YKAAKELGIHTIAG-TMPN-AHKPCLNLADEISYM----DISNPDEVEQKVKDLNLDGAATC-CLDTGIVSLARICDKEN 95 (403)
T ss_dssp HHHHHHHTCEEEEE-ECSS-CCHHHHHHCSEEEEC----CTTCHHHHHHHTTTSCCSEEECC-SCSTTHHHHHHHHHHHT
T ss_pred HHHHHHCCCEEEEE-cCCC-CCCcchhhCCeEEEe----cCCCHHHHHHHHHHcCCCEEEeC-CcchhHHHHHHHHHHcC
Confidence 46899999 77777 5444 466777888876442 48899999999999999999999 99999999999999999
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+ +||++++++
T Consensus 96 l--~g~~~~~~~ 105 (403)
T 4dim_A 96 L--VGLNEEAAI 105 (403)
T ss_dssp C--SSCCHHHHH
T ss_pred c--CCCCHHHHH
Confidence 8 699999875
No 15
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.75 E-value=6.7e-09 Score=84.66 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=65.0
Q ss_pred CcEEEEeecccc-cccccceecccCCCC---CCCCCCCChHHHHHHHHHcCCceecCCCccCCCC--HHHHHHHHhCCCe
Q psy6380 19 GTTIIILSKRKL-EDSSLWLLRDQGKRM---PPVAAYLNNPEIICIANNINVDAIHPGYGFLSER--EDFAKAVIGAALE 92 (103)
Q Consensus 19 g~tvai~t~~dl-~~a~~~~~AD~~~~~---~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn--~~Fa~~~~~~gi~ 92 (103)
.+|||++++.|. ....++++||+.... +....++.++.|+++|++.++|+||| +||+ ..|++.|++.|+.
T Consensus 52 ~~~Vav~~~~D~~~~~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip----~sE~~l~~~a~~~e~~Gi~ 127 (474)
T 3vmm_A 52 KYSVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITT----NNELFIAPMAKACERLGLR 127 (474)
T ss_dssp HHEEEEEECGGGCSSGGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEE----SCGGGHHHHHHHHHHTTCC
T ss_pred ceEEEEEeCCCcccCCcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEE----CCcccHHHHHHHHHHcCCC
Confidence 589999999994 333448999997543 22345688999999999999999999 6899 8999999999998
Q ss_pred EeCCChhhhc
Q psy6380 93 FIGPTTNVLK 102 (103)
Q Consensus 93 FIGP~~~~m~ 102 (103)
||++++++
T Consensus 128 --g~~~~ai~ 135 (474)
T 3vmm_A 128 --GAGVQAAE 135 (474)
T ss_dssp --CSCHHHHH
T ss_pred --CCCHHHHH
Confidence 99999875
No 16
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=98.61 E-value=2.2e-08 Score=76.81 Aligned_cols=81 Identities=11% Similarity=0.015 Sum_probs=61.2
Q ss_pred HHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC
Q psy6380 13 DSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 13 ~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi 91 (103)
.++|+.| ++|++-.+ .++.+.++||+.... ..+.+.+.++.+++ ++|+|||++|+++++..+++.+++.|+
T Consensus 18 ~~Ak~~G~~vv~vd~~---~~~~~~~~aD~~~~~---~~~~d~~~~~~~~~--~~D~v~~~~~~~~~~~~~~~~~~~~~~ 89 (363)
T 4ffl_A 18 YLSKKAGMKVVLVDKN---PQALIRNYADEFYCF---DVIKEPEKLLELSK--RVDAVLPVNENLACIEFLNSIKEKFSC 89 (363)
T ss_dssp HHHHHTTCEEEEEESC---TTCTTTTTSSEEEEC---CTTTCHHHHHHHHT--SSSEEEECCCCHHHHHHHHHHGGGCSS
T ss_pred HHHHHCCCEEEEEeCC---CCChhHhhCCEEEEC---CCCcCHHHHHHHhc--CCCEEEECCCChhHHHHHHHHHHHCCC
Confidence 4789999 88777444 456677788875432 23567888887765 799999999999998877776666665
Q ss_pred eEeCCChhhhc
Q psy6380 92 EFIGPTTNVLK 102 (103)
Q Consensus 92 ~FIGP~~~~m~ 102 (103)
++||++++++
T Consensus 90 -~~g~~~~a~~ 99 (363)
T 4ffl_A 90 -PVLFDFEAYR 99 (363)
T ss_dssp -CBCCCHHHHH
T ss_pred -ccCCCHHHHH
Confidence 6899998875
No 17
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.54 E-value=2e-07 Score=71.59 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=64.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..++++.| +++++.+.++ ......+|+... -+|.|.+.|+++|++.++|+|+||++++++ .+++.+++.|
T Consensus 27 ~~a~~~~G~~v~~~~~~~~---~~~~~~~d~~~~----~~~~d~~~l~~~~~~~~~d~v~~~~e~~~~--~~~~~l~~~g 97 (391)
T 1kjq_A 27 AIECQRLGVEVIAVDRYAD---APAMHVAHRSHV----INMLDGDALRRVVELEKPHYIVPEIEAIAT--DMLIQLEEEG 97 (391)
T ss_dssp HHHHHTTTCEEEEEESSTT---CGGGGGSSEEEE----CCTTCHHHHHHHHHHHCCSEEEECSSCSCH--HHHHHHHHTT
T ss_pred HHHHHHcCCEEEEEECCCC---CchhhhccceEE----CCCCCHHHHHHHHHHcCCCEEEECCCcCCH--HHHHHHHhCC
Confidence 46789999 7777777655 344556666433 247899999999999999999999998875 4778899999
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+ ++||++++++
T Consensus 98 i-~~~~~~~~~~ 108 (391)
T 1kjq_A 98 L-NVVPCARATK 108 (391)
T ss_dssp C-EESSCHHHHH
T ss_pred C-CcCCCHHHHH
Confidence 9 7899998874
No 18
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.49 E-value=1.5e-07 Score=73.95 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=64.8
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..+|++.| +++++.+.++ ......+|+... -+|.|.+.|+++|++.++|+|+||++++++ .+++.+++.|
T Consensus 35 ~~a~~~~G~~v~~v~~~~~---~~~~~~ad~~~~----~~~~d~~~l~~~~~~~~~d~V~~~~e~~~~--~~~~~l~~~g 105 (433)
T 2dwc_A 35 AIEAQRLGVEVVAVDRYAN---APAMQVAHRSYV----GNMMDKDFLWSVVEREKPDAIIPEIEAINL--DALFEFEKDG 105 (433)
T ss_dssp HHHHHHTTCEEEEEESSTT---CHHHHHSSEEEE----SCTTCHHHHHHHHHHHCCSEEEECSSCSCH--HHHHHHHHTT
T ss_pred HHHHHHCCCEEEEEECCCC---ChhhhhcceEEE----CCCCCHHHHHHHHHHcCCCEEEECcccCCH--HHHHHHHhcC
Confidence 46889999 7777777655 234455665433 247899999999999999999999999874 6888999999
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+ ++||++++++
T Consensus 106 i-~~~~~~~~~~ 116 (433)
T 2dwc_A 106 Y-FVVPNARATW 116 (433)
T ss_dssp C-CBSSCHHHHH
T ss_pred C-eeCCCHHHHH
Confidence 9 8999998875
No 19
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.34 E-value=3e-07 Score=81.49 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred chHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc-CCCCH--HHHH--
Q psy6380 11 NYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF-LSERE--DFAK-- 84 (103)
Q Consensus 11 ~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF-LSEn~--~Fa~-- 84 (103)
-..+|+++| ++|+|.+.++ ....+..++|+..-.+ +|.+.|++++++.++|+|+|++|+ .++|. .+++
T Consensus 33 ~~~al~~~G~~vv~v~~~~~-~~~~~~~~ad~~~i~p-----~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~ 106 (1073)
T 1a9x_A 33 ACKALREEGYRVINVNSNPA-TIMTDPEMADATYIEP-----IHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQG 106 (1073)
T ss_dssp HHHHHHHHTCEEEEECSCTT-CGGGCGGGSSEEECSC-----CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCEEEEEeCCcc-cccCChhhCcEEEECC-----CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhh
Confidence 346899999 8888888776 5456677888754322 589999999999999999999996 22222 2333
Q ss_pred HHHhCCCeEeCCChhhhc
Q psy6380 85 AVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 85 ~~~~~gi~FIGP~~~~m~ 102 (103)
.|++.|+.|+||++++++
T Consensus 107 ~le~~gv~~~G~~~~ai~ 124 (1073)
T 1a9x_A 107 VLEEFGVTMIGATADAID 124 (1073)
T ss_dssp HHHHHTCEECSSCHHHHH
T ss_pred HHHHcCCeeeCCCHHHHH
Confidence 678899999999999875
No 20
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.07 E-value=6.1e-06 Score=63.26 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=60.5
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..+|++.| +++++....+ .....++|+ .. .+|.|.+.|+++| .++|+|+||+++. +..+++.+++.|
T Consensus 15 ~~a~~~~G~~v~~~~~~~~---~~~~~~a~~-~~----~~~~d~~~l~~~~--~~~d~v~~~~e~~--~~~~~~~l~~~g 82 (369)
T 3aw8_A 15 ALAGYPLGLSFRFLDPSPE---ACAGQVGEL-VV----GEFLDEGALLRFA--EGLALVTYEFENV--PVEAARRLEGRL 82 (369)
T ss_dssp HHHHTTBTCCEEEEESCTT---CGGGGTSEE-EE----CCTTCHHHHHHHH--TTCSEEEECCTTC--CHHHHHHHHHHS
T ss_pred HHHHHHcCCEEEEEeCCCC---ChHHHhhce-Ee----cCCCCHHHHHHHH--hCCCEEEECCCCc--CHHHHHHHHHcC
Confidence 46799999 7777665544 334456666 32 4789999999999 6899999999986 488999999999
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
++||++++++
T Consensus 83 --~~g~~~~~~~ 92 (369)
T 3aw8_A 83 --PLYPPAKALE 92 (369)
T ss_dssp --CBSSCHHHHH
T ss_pred --CcCCCHHHHH
Confidence 8999999875
No 21
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.94 E-value=1e-05 Score=64.58 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=61.9
Q ss_pred hHHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC
Q psy6380 12 YDSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 12 ~~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi 91 (103)
..++++.|-.|.++ +.+ .++....+||+... .+|.|.+.|+++|+ ++|+|+ |+|.+.+.++++.+++.
T Consensus 51 ~~aa~~lG~~v~v~-d~~-~~~p~~~~ad~~~~----~~~~d~~~l~~~a~--~~D~V~--~~~e~~~~~~~~~l~~~-- 118 (419)
T 4e4t_A 51 CFAAQSMGYRVAVL-DPD-PASPAGAVADRHLR----AAYDDEAALAELAG--LCEAVS--TEFENVPAASLDFLART-- 118 (419)
T ss_dssp HHHHHHTTCEEEEE-CSC-TTCHHHHHSSEEEC----CCTTCHHHHHHHHH--HCSEEE--ECCTTCCHHHHHHHHTT--
T ss_pred HHHHHHCCCEEEEE-CCC-CcCchhhhCCEEEE----CCcCCHHHHHHHHh--cCCEEE--EccCcCCHHHHHHHHcc--
Confidence 35789999444444 333 56677788887543 56999999999994 699999 67788899999999888
Q ss_pred eEeCCChhhhc
Q psy6380 92 EFIGPTTNVLK 102 (103)
Q Consensus 92 ~FIGP~~~~m~ 102 (103)
.++||++++++
T Consensus 119 ~~vgp~~~a~~ 129 (419)
T 4e4t_A 119 TFVAPAGRCVA 129 (419)
T ss_dssp SEESSCHHHHH
T ss_pred CCcCCCHHHHH
Confidence 48999999875
No 22
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.85 E-value=1e-05 Score=63.17 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=44.8
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-+|.|.+.|+++|++.++|+|+|| +|++ .+++.|++.|+.|+||++++++
T Consensus 46 ~~~~d~~~l~~~~~~~~~d~v~~~----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~ 98 (424)
T 2yw2_A 46 ISPTDVEKLAEFAKNEGVDFTIVG----PEAPLVEGIVDEFEKRGLKIFGPNKEAAK 98 (424)
T ss_dssp SCTTCHHHHHHHHHHHTCSEEEEC----SHHHHHTTHHHHHHHTTCCEESCCTTTTH
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEC----CchHHHHHHHHHHHHCCCcEECcCHHHHH
Confidence 368999999999999999999997 5877 5888899999999999998875
No 23
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.78 E-value=1.5e-06 Score=67.49 Aligned_cols=48 Identities=19% Similarity=0.037 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCceecCC-CccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 55 PEIICIANNINVDAIHPG-YGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPG-YGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+.+.+..+..++|.|+|. +|+++||..++..|+..||.|+||++.+++
T Consensus 87 ~~~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~ 135 (357)
T 4fu0_A 87 EIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSA 135 (357)
T ss_dssp EC----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHH
T ss_pred hhhhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHH
Confidence 344556667789999999 899999999999999999999999998874
No 24
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.74 E-value=1.9e-05 Score=61.54 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHHHhCCCeEeCCChhhhc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+|.|.+.|+++|++.++|+|+|| +|++ .+++.+++.|+.|+||++++++
T Consensus 46 ~~~d~~~l~~~~~~~~~d~v~~~----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~ 97 (417)
T 2ip4_A 46 WNGDVEALADWALAEGIDLTLVG----PEAPLVEGIADAFQARGLLLFGPTQKAAM 97 (417)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEEC----SSHHHHTTHHHHHHHHTCCEESCCHHHHH
T ss_pred CccCHHHHHHHHHHcCCCEEEEC----CchHHHHHHHHHHHHCCCCEECccHHHHH
Confidence 79999999999999999999998 5776 5888899999999999999875
No 25
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.72 E-value=2.6e-05 Score=61.73 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=44.5
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHHHhCCCeEeCCChhhhc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+|.|.+.|+++|++.++|+|+|| +|++ .+++.|++.|+.|+||++++++
T Consensus 73 ~~~d~~~l~~~~~~~~~d~V~~~----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~ 124 (452)
T 2qk4_A 73 SISDHTALAQFCKEKKIEFVVVG----PEAPLAAGIVGNLRSAGVQCFGPTAEAAQ 124 (452)
T ss_dssp CSSCHHHHHHHHHHHTCCEEEEC----SSHHHHTTHHHHHHHTTCCEESCCTTTTH
T ss_pred CCCCHHHHHHHHHHcCCCEEEEC----CcHHHHHHHHHHHHhcCCcEeCcCHHHHH
Confidence 68999999999999999999997 5886 6888999999999999998875
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=97.55 E-value=0.00011 Score=57.13 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=58.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..++++.| +++++-.. .++....++|+... .+|.|.+.|.+++++ +|+| +++|...+.++++.+++.|
T Consensus 30 a~aa~~~G~~vi~~d~~---~~~~~~~~ad~~~~----~~~~d~~~l~~~~~~--~dvI--~~~~e~~~~~~~~~l~~~g 98 (389)
T 3q2o_A 30 ALAAKEMGYKIAVLDPT---KNSPCAQVADIEIV----ASYDDLKAIQHLAEI--SDVV--TYEFENIDYRCLQWLEKHA 98 (389)
T ss_dssp HHHHHHTTCEEEEEESS---TTCTTTTTCSEEEE----CCTTCHHHHHHHHHT--CSEE--EESCCCCCHHHHHHHHHHS
T ss_pred HHHHHHcCCEEEEEeCC---CCCchHHhCCceEe----cCcCCHHHHHHHHHh--CCEe--eeccccccHHHHHHHHhhC
Confidence 46789999 55555222 34455566666433 479999999999986 6778 7777888999999999998
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+ +||++++++
T Consensus 99 ~--~~~~~~~~~ 108 (389)
T 3q2o_A 99 Y--LPQGSQLLS 108 (389)
T ss_dssp C--CTTCSHHHH
T ss_pred c--cCCCHHHHH
Confidence 7 999998875
No 27
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.54 E-value=8.8e-05 Score=55.44 Aligned_cols=84 Identities=10% Similarity=0.088 Sum_probs=55.3
Q ss_pred HHHHHc-C--cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCc----cCCCCHHHHHH
Q psy6380 13 DSLIQA-G--TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYG----FLSEREDFAKA 85 (103)
Q Consensus 13 ~~~~~~-g--~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYG----FLSEn~~Fa~~ 85 (103)
.+|+++ | +++++-+.++ +.....+|+....+....-..++.|++++++.++|+|+|+.+ ++++ .++.
T Consensus 20 ~~l~~~~~~~~v~~~d~~~~---~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~d~vi~~~~~~~~~~a~---~~~~ 93 (331)
T 2pn1_A 20 EYFVKEFKTGRVSTADCSPL---ASALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQ---ATER 93 (331)
T ss_dssp HHHHHHCCSSEEEEEESCTT---CGGGGGSSSEEECCCTTSTTHHHHHHHHHHHHTCCEEEESSHHHHHHHHH---THHH
T ss_pred HHHHHhcCCCEEEEEeCCCc---chhHHhhhceecCCCCCChhHHHHHHHHHHHcCCCEEEeCCchhHHHHHH---HHHH
Confidence 467887 5 3444433333 333345665422221222234899999999999999999987 4444 3577
Q ss_pred HHhCCCeEeCCChhhhc
Q psy6380 86 VIGAALEFIGPTTNVLK 102 (103)
Q Consensus 86 ~~~~gi~FIGP~~~~m~ 102 (103)
+++.|+.++||++++++
T Consensus 94 l~~~g~~~~~~~~~~~~ 110 (331)
T 2pn1_A 94 FQAIGVTVIVSPYAACE 110 (331)
T ss_dssp HHTTTCEECCCCHHHHH
T ss_pred HHhCCcEEecCCHHHHH
Confidence 88889999999998864
No 28
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.52 E-value=0.00026 Score=54.40 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=57.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..+|++.| +++++-+..+ ......+|+... -+|.|.+.|++++ .++|+|+|++.+.. ..+++.+++.|
T Consensus 17 ~~a~~~~G~~v~~~~~~~~---~~~~~~~~~~~~----~~~~d~~~l~~~~--~~~d~v~~~~e~~~--~~~~~~l~~~g 85 (380)
T 3ax6_A 17 TLEAKKMGFYVIVLDPTPR---SPAGQVADEQIV----AGFFDSERIEDLV--KGSDVTTYDLEHID--VQTLKKLYNEG 85 (380)
T ss_dssp HHHHHHTTCEEEEEESSTT---CTTGGGSSEEEE----CCTTCHHHHHHHH--HTCSEEEESCSCSC--HHHHHHHHHTT
T ss_pred HHHHHHCCCEEEEEeCCCC---CchhhhCceEEE----CCCCCHHHHHHHH--hcCCEEEecccCCC--HHHHHHHHHCC
Confidence 46799999 5555554433 223345554322 2478999999999 57999999997664 67888999999
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+. +||++++++
T Consensus 86 i~-~~~~~~~~~ 96 (380)
T 3ax6_A 86 YK-IHPSPYTLE 96 (380)
T ss_dssp CE-ESSCHHHHH
T ss_pred Ce-ECCCHHHHH
Confidence 98 789998864
No 29
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.30 E-value=0.00012 Score=65.04 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCcchHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 8 CKDNYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 8 ~~~~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
|..-..+|++.| ++++|.+.++ .-+.....+|...- ..++.+.++++++..++|.|.|++|.-. ...+++.|
T Consensus 582 ~~~~~~al~~~G~~vi~v~~np~-~~s~~~~~ad~~~~-----~p~~~e~v~~i~~~e~~d~Vi~~~g~~~-~~~la~~L 654 (1073)
T 1a9x_A 582 CVHASLALREDGYETIMVNCNPE-TVSTDYDTSDRLYF-----EPVTLEDVLEIVRIEKPKGVIVQYGGQT-PLKLARAL 654 (1073)
T ss_dssp HHHHHHHHHHTTCEEEEECCCTT-SSTTSTTSSSEEEC-----CCCSHHHHHHHHHHHCCSEEECSSSTHH-HHTTHHHH
T ss_pred HHHHHHHHHhcCCEEEEEecCCc-ccccccccccEEEe-----ccchhhhhhhhhhhcCcceEEeecCCch-HHHHHHHH
Confidence 333478999999 8888877666 32233344454321 1267999999999999999999988421 13678999
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
++.|+.++||++++++
T Consensus 655 e~~Gi~i~G~~~~ai~ 670 (1073)
T 1a9x_A 655 EAAGVPVIGTSPDAID 670 (1073)
T ss_dssp HHTTCCBCSSCHHHHH
T ss_pred HHCCCCeeCCCHHHHH
Confidence 9999999999999875
No 30
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.30 E-value=0.00028 Score=55.12 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=57.1
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChH----HHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNP----EIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~----~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
+.++++.| ++|+|.+..+ ..+.+...+|+.... .+|.|.+ .+.+++++.++|+|+|+..+..+ ..++.+
T Consensus 21 ~~aa~~lG~~vv~v~~~~~-~~~~~~~~~d~~~~~---~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~--~~a~l~ 94 (425)
T 3vot_A 21 FEEAERLGLKVTFFYNSAE-DFPGNLPAVERCVPL---PLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALP--FTAKAA 94 (425)
T ss_dssp HHHHHHTTCEEEEEEETTS-CCCCSCTTEEEEEEE---CTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHH--HHHHHH
T ss_pred HHHHHHCCCEEEEEECCCc-ccccCHhhccEEEec---CCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHH--HHHHHH
Confidence 57889999 8999999888 666666667765432 2455654 45566677899999987644332 234555
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
++.|+. ||++++++
T Consensus 95 e~lglp--g~~~~~~~ 108 (425)
T 3vot_A 95 EALNLP--GLPFTTME 108 (425)
T ss_dssp HHTTCS--SCCHHHHH
T ss_pred HHcCCC--CCCHHHHH
Confidence 777764 99998875
No 31
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.19 E-value=0.00021 Score=55.63 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=43.8
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-+|.|.+.|+++|++.++|+|+|| +|++ .+++.+++.|+.++||++++++
T Consensus 46 ~~~~d~~~l~~~~~~~~~d~v~~~----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~ 98 (422)
T 2xcl_A 46 IEESDHAGLVSFAKQNQVGLTIVG----PEVPLIEGLVDEFEKAGLHVFGPSKAAAI 98 (422)
T ss_dssp CCTTCHHHHHHHHHHTTEEEEEEC----SHHHHHTTHHHHHHHTTCCEESCCTTTTH
T ss_pred cCcCCHHHHHHHHHHcCCCEEEEC----CcHHHHHHHHHHHHHCCCCEECcCHHHHH
Confidence 368899999999999999999997 4766 5778889999999999998864
No 32
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=97.16 E-value=0.001 Score=52.49 Aligned_cols=79 Identities=9% Similarity=0.126 Sum_probs=58.4
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..++++.| +++++- . .++...+++|+.. .-..+|.|.+.|.++|++ +|+|-++.-. -+.++.+.|++ |
T Consensus 40 ~~aa~~lG~~v~~~d-~---~~~p~~~~ad~~~--~~~~~~~d~~~l~~~a~~--~d~i~~e~e~--~~~~~l~~l~~-g 108 (403)
T 3k5i_A 40 VESANRLNIQVNVLD-A---DNSPAKQISAHDG--HVTGSFKEREAVRQLAKT--CDVVTAEIEH--VDTYALEEVAS-E 108 (403)
T ss_dssp HHHHHHHTCEEEEEE-S---TTCTTGGGCCSSC--CEESCTTCHHHHHHHHTT--CSEEEESSSC--SCHHHHHHHTT-T
T ss_pred HHHHHHCCCEEEEEE-C---CCCcHHHhccccc--eeecCCCCHHHHHHHHHh--CCEEEECCCC--CCHHHHHHHHc-C
Confidence 46789999 666665 3 3456667777421 123579999999999986 6788766443 36788899998 9
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
+. +||++++++
T Consensus 109 ~~-v~p~~~a~~ 119 (403)
T 3k5i_A 109 VK-IEPSWQAIR 119 (403)
T ss_dssp SE-ESSCHHHHH
T ss_pred Cc-cCcCHHHHH
Confidence 87 999999875
No 33
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.13 E-value=0.00039 Score=55.05 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-++.|.+.|+++|++.++|+|+|| +|++ .+++.+++.|+.++||++++++
T Consensus 67 ~~~~d~~~l~~~~~~~~~d~vi~~----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~ 119 (451)
T 2yrx_A 67 IDELDIEALVQFAKQQAIDLTIVG----PEAPLASGIVDRFMAEGLRIFGPSQRAAL 119 (451)
T ss_dssp CCTTCHHHHHHHHHHTTCSEEEEC----SHHHHHTTHHHHHHHTTCCEESCCHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEC----CchHHHHHHHHHHHHCCCCEeCccHHHHH
Confidence 358899999999999999999997 4665 4778889999999999998864
No 34
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.10 E-value=0.00058 Score=54.69 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=44.0
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCHH---HHHHHHhCCCeEeCCChhhhc
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSERED---FAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~---Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
++.|.+.|+++|++.++|.|+|| +|++- +++.+++.|+.++||++++++
T Consensus 68 ~~~d~~~l~~~a~~~~id~vv~g----~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~ 119 (442)
T 3lp8_A 68 DINSTIEVIQVCKKEKIELVVIG----PETPLMNGLSDALTEEGILVFGPSKAAAR 119 (442)
T ss_dssp CTTCHHHHHHHHHHTTCCEEEEC----SHHHHHTTHHHHHHHTTCEEESCCHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCEEEEC----CcHHHHHHHHHHHHhcCCcEecCCHHHHH
Confidence 78999999999999999999997 47774 788899999999999998864
No 35
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=96.96 E-value=0.00063 Score=54.20 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=43.9
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHHHhCCCeEeCCChhhhc
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-++.|.+.|+++|++.++|.|+||. |++ .+++.+++.|+.++||++++++
T Consensus 51 ~~~~d~~~l~~~a~~~~id~vv~g~----e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~ 103 (431)
T 3mjf_A 51 IAATDIAGLLAFAQSHDIGLTIVGP----EAPLVIGVVDAFRAAGLAIFGPTQAAAQ 103 (431)
T ss_dssp CCTTCHHHHHHHHHHTTEEEEEECS----HHHHHTTHHHHHHHTTCCEESCCHHHHH
T ss_pred CCcCCHHHHHHHHHHhCcCEEEECC----chHHHHHHHHHHHhcCCCeeCCCHHHHH
Confidence 3688999999999999999999985 444 4889999999999999998864
No 36
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=96.76 E-value=0.0023 Score=49.82 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..++++.| +++++ .. + .++....++|+... .+|.|.+.|.+++++ +|+| +++|-.-..+..+.+++.+
T Consensus 28 a~aa~~lG~~viv~-d~-~-~~~p~~~~ad~~~~----~~~~d~~~l~~~~~~--~dvi--~~~~E~~~~~~l~~l~~~~ 96 (377)
T 3orq_A 28 AQSAQKMGYKVVVL-DP-S-EDCPCRYVAHEFIQ----AKYDDEKALNQLGQK--CDVI--TYEFENISAQQLKLLCEKY 96 (377)
T ss_dssp HHHHHHTTCEEEEE-ES-C-TTCTTGGGSSEEEE----CCTTCHHHHHHHHHH--CSEE--EESSTTSCHHHHHHHHHHS
T ss_pred HHHHHHCCCEEEEE-EC-C-CCChhhhhCCEEEE----CCCCCHHHHHHHHHh--CCcc--eecccccCHHHHHHHhhhc
Confidence 35789999 55555 32 2 34556667776433 459999999999987 7788 4555223344566676664
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
++||++++++
T Consensus 97 --~v~p~~~~~~ 106 (377)
T 3orq_A 97 --NIPQGYQAIQ 106 (377)
T ss_dssp --CCTTTTHHHH
T ss_pred --CCCCCHHHHH
Confidence 6889998875
No 37
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.34 E-value=0.00052 Score=53.81 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+|.+.|+++|++.++|+|+|| +|++.+++.+++.+. ++||++++++
T Consensus 57 id~~~l~~~~~~~~~d~V~~~----~E~~~~a~~~~~l~~-~~g~~~~~~~ 102 (412)
T 1vkz_A 57 HPYEGEKTLKAIPEEDIVIPG----SEEFLVEGVSNWRSN-VFGPVKEVAR 102 (412)
T ss_dssp CCCCTHHHHHTSCSSCEECCS----SGGGTCC-----CTT-BSSCCHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEC----CcHHHHHHHHHHhhh-hhCCCHHHHH
Confidence 579999999999999999996 689888788888888 9999999875
No 38
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=95.95 E-value=0.0043 Score=48.12 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=36.4
Q ss_pred HcCCceecCC-CccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 63 NINVDAIHPG-YGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 63 ~~g~daIHPG-YGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..++|+|+|+ +|+.+||..++..++..||.++||+..+++
T Consensus 96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~ 136 (364)
T 3i12_A 96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSA 136 (364)
T ss_dssp CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHH
T ss_pred cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHH
Confidence 4579999999 799999999999999999999999987764
No 39
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=94.63 E-value=0.013 Score=44.48 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=36.3
Q ss_pred HcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 63 NINVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 63 ~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+.++|+|+|+. |..+|+..++..++..|+.++||+..+++
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~ 114 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASA 114 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHH
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHH
Confidence 56899999999 89999999999999999999999988764
No 40
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=94.58 E-value=0.0095 Score=46.98 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=36.5
Q ss_pred HcCCceecCC-CccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 63 NINVDAIHPG-YGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 63 ~~g~daIHPG-YGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..++|+|+|+ .|+.+|+..++..++..||.++||++.+++
T Consensus 115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~ 155 (386)
T 3e5n_A 115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSA 155 (386)
T ss_dssp CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHH
T ss_pred cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHH
Confidence 4689999999 799999999999999999999999987764
No 41
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=94.51 E-value=0.018 Score=45.32 Aligned_cols=34 Identities=9% Similarity=-0.061 Sum_probs=30.2
Q ss_pred CCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 65 NVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 65 g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+||+|+|++++++.+ +.+.|++.| ++||++++++
T Consensus 42 ~~d~it~e~e~v~~~--~l~~l~~~~--~v~p~~~a~~ 75 (355)
T 3eth_A 42 QQSVITAEIERWPET--ALTRQLARH--PAFVNRDVFP 75 (355)
T ss_dssp TTSEEEESCSCCCCC--HHHHHHHTC--TTBTTTTHHH
T ss_pred cCCEEEECcCCcCHH--HHHHHHhcC--CcCCCHHHHH
Confidence 999999999999865 678898887 8999999875
No 42
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=94.41 E-value=0.022 Score=44.25 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=36.2
Q ss_pred HcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 63 NINVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 63 ~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..++|+|+|++ |..+|+..++..++..|+.++||++++++
T Consensus 91 ~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~ 131 (377)
T 1ehi_A 91 AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHA 131 (377)
T ss_dssp TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHH
T ss_pred ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHH
Confidence 35899999999 89999999999999999999999998764
No 43
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=94.16 E-value=0.018 Score=43.68 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=45.5
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..+|++.| +++++.+..+ .....++|+.... +.|++++ .++|+|++++..... .+++.+++
T Consensus 17 ~~a~~~~G~~v~~~~~~~~---~~~~~~~~~~~~~---------~~l~~~~--~~~d~v~~~~e~~~~--~~~~~l~~-- 78 (365)
T 2z04_A 17 ILEGRKLGFKFHVLEDKEN---APACRVADRCFRT---------GQISEFV--DSCDIITYEFEHIKD--EVLEKCES-- 78 (365)
T ss_dssp HHHHGGGTCEEEEECSSSS---CHHHHHSSEEECG---------GGHHHHH--HHCSEEEESSSCCCH--HHHHHHTT--
T ss_pred HHHHHHCCCEEEEEeCCCC---CchhhhccceeeH---------HHHHHHh--hcCCEEEECCCCCcH--HHHHHHhh--
Confidence 46789999 6666654433 2234455543221 1678888 578999999843322 36677654
Q ss_pred CeEeCCChhhhc
Q psy6380 91 LEFIGPTTNVLK 102 (103)
Q Consensus 91 i~FIGP~~~~m~ 102 (103)
++||++++++
T Consensus 79 --~~g~~~~~~~ 88 (365)
T 2z04_A 79 --KLIPNPQALY 88 (365)
T ss_dssp --TBSSCTHHHH
T ss_pred --hcCCCHHHHH
Confidence 8999998875
No 44
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=93.94 E-value=0.095 Score=35.98 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++.|.+.|+.+|+---|+ ++.++.+.++++|++++||..
T Consensus 90 ~~~vv~~~~~~gi~~i~~~~g~--~~~~l~~~a~~~Gi~vvGpnc 132 (144)
T 2d59_A 90 TMEYVEQAIKKGAKVVWFQYNT--YNREASKKADEAGLIIVANRC 132 (144)
T ss_dssp HHHHHHHHHHHTCSEEEECTTC--CCHHHHHHHHHTTCEEEESCC
T ss_pred HHHHHHHHHHcCCCEEEECCCc--hHHHHHHHHHHcCCEEEcCCc
Confidence 4566777778899988866665 378999999999999999975
No 45
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=93.70 E-value=0.023 Score=43.63 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=36.2
Q ss_pred HHcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 62 NNINVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 62 ~~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+..++|+|+|+. |+.+|+..++..++..|+.++||++.+++
T Consensus 84 ~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~ 125 (364)
T 2i87_A 84 SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 (364)
T ss_dssp TSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHH
T ss_pred cccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHH
Confidence 356799999998 89999999999999999999999987764
No 46
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=93.56 E-value=0.024 Score=44.40 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=35.3
Q ss_pred CCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 65 NVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 65 g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
++|+|+|.+ |...|+..++..++..||.|+||+..+++
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~ 147 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASA 147 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHH
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHH
Confidence 799999999 89999999999999999999999987754
No 47
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=93.40 E-value=0.084 Score=36.09 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
+..+++-|.+.|+.+||---|| ++.++.+.++++||+++|
T Consensus 71 v~~~v~e~~~~g~k~v~~~~G~--~~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 71 QLSEYNYILSLKPKRVIFNPGT--ENEELEEILSENGIEPVI 110 (122)
T ss_dssp HGGGHHHHHHHCCSEEEECTTC--CCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCC--ChHHHHHHHHHcCCeEEC
Confidence 4556777888899999988888 578999999999999996
No 48
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=93.31 E-value=0.18 Score=34.73 Aligned_cols=44 Identities=16% Similarity=0.023 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
.+..+++-+.+.|+.+|+---|- ...++++.++++|++++||+.
T Consensus 82 ~v~~v~~~~~~~g~~~i~i~~~~--~~~~l~~~a~~~Gi~~igpnc 125 (145)
T 2duw_A 82 AAWGVAQEAIAIGAKTLWLQLGV--INEQAAVLAREAGLSVVMDRC 125 (145)
T ss_dssp HHHHHHHHHHHHTCCEEECCTTC--CCHHHHHHHHTTTCEEECSCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCh--HHHHHHHHHHHcCCEEEcCCe
Confidence 36666766777898888765553 378999999999999999974
No 49
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=93.06 E-value=0.038 Score=42.19 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=36.1
Q ss_pred HcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 63 NINVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 63 ~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+.++|.|+|.+ |...|+..++..++..||.++||++.+++
T Consensus 88 ~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~ 128 (346)
T 3se7_A 88 TIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSA 128 (346)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHH
T ss_pred ccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHH
Confidence 45799999998 89999999999999999999999987754
No 50
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=92.86 E-value=0.0043 Score=54.08 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
++.+.|+++|++.|+|+| ||+|++.|++.+...++.||||..
T Consensus 433 ~st~~Iv~~A~~~gid~~-----vlg~e~~l~~lg~~~~~~~ig~~~ 474 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTE-----ILDENDQFLCLKYGDHIEYVKNGN 474 (757)
T ss_dssp HHHHHHHHHHHHHTCEEE-----EEETTTTEEEEEETTEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCCEE-----EECCCHHHHHhcccccceeeccCc
Confidence 457899999999999999 899999999999999999998754
No 51
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=92.84 E-value=0.083 Score=36.29 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=34.5
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++-|.+.|+.+|+-=-|+. +.++++.++++|++++||+.
T Consensus 83 ~~~v~~~~~~~gi~~i~~~~g~~--~~~~~~~a~~~Gir~vgpnc 125 (140)
T 1iuk_A 83 LMDHLPEVLALRPGLVWLQSGIR--HPEFEKALKEAGIPVVADRC 125 (140)
T ss_dssp HTTTHHHHHHHCCSCEEECTTCC--CHHHHHHHHHTTCCEEESCC
T ss_pred HHHHHHHHHHcCCCEEEEcCCcC--HHHHHHHHHHcCCEEEcCCc
Confidence 34456666778888888777774 68999999999999999974
No 52
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=92.39 E-value=0.22 Score=34.08 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=33.8
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++-+.+.|+.+|+.=-|- +..++++.++++|+++|||+.
T Consensus 82 v~~v~~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~igpnc 124 (138)
T 1y81_A 82 GLQVAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGRC 124 (138)
T ss_dssp HHHHHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSCC
T ss_pred HHHHHHHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEcCCc
Confidence 4556666667888888765543 578999999999999999975
No 53
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=92.26 E-value=0.066 Score=39.36 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=33.4
Q ss_pred HHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 62 NNINVDAIHPGYG-FLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 62 ~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+..++|.|+|+.. ...|+..++..++..|+.++||++++++
T Consensus 52 ~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~ 93 (307)
T 3r5x_A 52 KAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSG 93 (307)
T ss_dssp HTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHH
T ss_pred hccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHH
Confidence 3468999988763 4458889999999999999999988764
No 54
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=91.88 E-value=0.1 Score=40.95 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=35.1
Q ss_pred cCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 64 INVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 64 ~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
.++|+|+|.. |...||..++..++..||.++||++.+++
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~ 136 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSA 136 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHH
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHH
Confidence 5799999998 78899999999999999999999987754
No 55
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=90.43 E-value=0.35 Score=35.06 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=29.7
Q ss_pred cCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 64 INVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 64 ~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..+|+|.+.. |...|+..+++.++..|+.++||++++++
T Consensus 53 ~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~ 92 (306)
T 1iow_A 53 MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 (306)
T ss_dssp TTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHH
T ss_pred cCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHH
Confidence 4667776553 33358888888999999999999998764
No 56
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=89.87 E-value=0.45 Score=33.79 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.6
Q ss_pred cCCc-eecCCCccCCCCHHHHHHHHhCCCeEeCCChhhh
Q psy6380 64 INVD-AIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101 (103)
Q Consensus 64 ~g~d-aIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m 101 (103)
..+| ++++.+| -.++..+++.+++.|+.++++ ++++
T Consensus 47 ~~~d~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~-~~~~ 83 (280)
T 1uc8_A 47 EGVTVALERCVS-QSRGLAAARYLTALGIPVVNR-PEVI 83 (280)
T ss_dssp TTCCEEEECCSS-HHHHHHHHHHHHHTTCCEESC-HHHH
T ss_pred CCCCEEEECCcc-chhhHHHHHHHHHCCCceeCC-HHHH
Confidence 5788 8899877 237788999999999999976 6554
No 57
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=89.51 E-value=0.48 Score=35.29 Aligned_cols=41 Identities=7% Similarity=-0.064 Sum_probs=31.4
Q ss_pred HHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 62 NNINVDAIHPGYG-FLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 62 ~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
++.+.|.|+|... -..|+..++..++..|+.++||++++++
T Consensus 62 ~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~ 103 (317)
T 4eg0_A 62 KDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSA 103 (317)
T ss_dssp HHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHH
T ss_pred hhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHH
Confidence 3467887755332 3348899999999999999999988764
No 58
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=87.03 E-value=0.38 Score=37.48 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=33.7
Q ss_pred CCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 65 NVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 65 g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
++|+|+|.. |...|+..++..++..|+.++||+..+++
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~ 145 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASV 145 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHH
Confidence 689999984 58899999999999999999999988764
No 59
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=84.76 E-value=1.9 Score=32.73 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=30.9
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCCCCH--HHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLSERE--DFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLSEn~--~Fa~~~~~~gi~FIGP~~ 98 (103)
...++..|.+.|+.. |.-=-|| ++.. ++.+.+++.|++++||+.
T Consensus 77 ~~~~~~ea~~~Gi~~iVi~t~G~-~~~~~~~l~~~A~~~gv~liGPNc 123 (288)
T 2nu8_A 77 CKDSILEAIDAGIKLIITITEGI-PTLDMLTVKVKLDEAGVRMIGPNT 123 (288)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCC-CHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEEecCC
Confidence 566777777889886 3322244 3333 788888899999999984
No 60
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=84.15 E-value=0.44 Score=36.01 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=34.0
Q ss_pred HcCCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 63 NINVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 63 ~~g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
..++|+|+|.. |..+|+..++..++..|+.++||++.+++
T Consensus 88 ~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~ 128 (343)
T 1e4e_A 88 INHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSA 128 (343)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHH
T ss_pred cccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHH
Confidence 35789999985 56779989999999999999999988764
No 61
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=83.96 E-value=0.63 Score=36.66 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=33.0
Q ss_pred CCceecCCC-ccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 65 NVDAIHPGY-GFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 65 g~daIHPGY-GFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
++|.|+|-. |...||..++..++..||.++||++.+++
T Consensus 119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~ 157 (383)
T 3k3p_A 119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 157 (383)
T ss_dssp TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHH
T ss_pred CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHH
Confidence 789988876 56779999999999999999999987754
No 62
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=82.48 E-value=1.7 Score=33.14 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=31.7
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCC-CCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLS-EREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLS-En~~Fa~~~~~~gi~FIGP~~ 98 (103)
...+++.|.+.|+.+ |.---||=. +..++.+.+++.|++++||+.
T Consensus 83 ~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc 129 (294)
T 2yv1_A 83 AKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNT 129 (294)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCC
Confidence 456677777889994 432335522 245788888999999999984
No 63
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=80.97 E-value=2.5 Score=32.58 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCCCCH--HHHHHHHhC-CCeEeCCCh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLSERE--DFAKAVIGA-ALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLSEn~--~Fa~~~~~~-gi~FIGP~~ 98 (103)
+..+++-|.+.|+.+ |+---|| +++. ++.+.++++ |++.|||+.
T Consensus 84 ~~~~~~e~i~~Gi~~iv~~t~G~-~~~~~~~l~~~a~~~~gi~liGPnc 131 (305)
T 2fp4_A 84 AAAAINEAIDAEVPLVVCITEGI-PQQDMVRVKHRLLRQGKTRLIGPNC 131 (305)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCC-CHHHHHHHHHHHTTCSSCEEECSSS
T ss_pred HHHHHHHHHHCCCCEEEEECCCC-ChHHHHHHHHHHHhcCCcEEEeCCC
Confidence 456666777789988 5555566 3444 788899999 999999974
No 64
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=80.18 E-value=3.3 Score=31.64 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=32.5
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCC-CCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLS-EREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLS-En~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++.|.+.|+.+ |.---||=. +..++.+.+++.|++++||+.
T Consensus 84 ~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGPNc 130 (297)
T 2yv2_A 84 APDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATIIGPNC 130 (297)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSS
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEcCCC
Confidence 567777788899994 433335522 245788888999999999984
No 65
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=76.72 E-value=2.5 Score=34.18 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=31.9
Q ss_pred hHHHHHHHHHcCCceec-C--CCccCCC-----CHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIH-P--GYGFLSE-----REDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH-P--GYGFLSE-----n~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++-|.+.|+.+|+ - |+....+ +.++.+.++++|+++|||+.
T Consensus 77 ~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc 129 (457)
T 2csu_A 77 VKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNC 129 (457)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCc
Confidence 34556666778998754 3 4432332 77899999999999999974
No 66
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=75.84 E-value=4.2 Score=29.78 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
+.+++.++..|++++||.|.++ +++|.+.+.++|+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~G~~V 207 (250)
T 3ks6_A 171 GAVIETAIAHSIHEIGVHIDTA--DAGLMAQVQAAGLDF 207 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGC--CHHHHHHHHHTTCEE
T ss_pred hHHHHHHHhcCCCEEecchhhC--CHHHHHHHHHCCCEE
Confidence 4577888999999999999876 578999999999864
No 67
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=74.69 E-value=3.2 Score=31.67 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=37.8
Q ss_pred CCCCh------HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe---EeCCCh
Q psy6380 50 AYLNN------PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE---FIGPTT 98 (103)
Q Consensus 50 sYlni------~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~---FIGP~~ 98 (103)
.|.|. ++.++.|++.|+|.|.-.---+.|..+|.+.+.++|+. ++-|++
T Consensus 102 ~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t 159 (267)
T 3vnd_A 102 LYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNA 159 (267)
T ss_dssp ECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTC
T ss_pred ecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCC
Confidence 47665 88999999999999443334457889999999999976 566654
No 68
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=73.15 E-value=1.6 Score=32.19 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=36.1
Q ss_pred CCCChHHHHHHHHHcC--CceecCCCc-cCCCCHHHHHHHHh-CCC
Q psy6380 50 AYLNNPEIICIANNIN--VDAIHPGYG-FLSEREDFAKAVIG-AAL 91 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g--~daIHPGYG-FLSEn~~Fa~~~~~-~gi 91 (103)
.+.+.+..++++++.+ ++.+|.|++ |+++-+++.+.+.+ .|.
T Consensus 20 D~~~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~~~v~~l~~~~g~ 65 (228)
T 3m47_A 20 DLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGC 65 (228)
T ss_dssp CCCSHHHHHHHHHTTTTTCSEEEEEHHHHHHHCTHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHcCCcccEEEEcHHHHHhcCHHHHHHHHhcCCC
Confidence 4778899999999998 899999999 88899999988877 553
No 69
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=72.72 E-value=6.1 Score=28.09 Aligned_cols=39 Identities=3% Similarity=-0.148 Sum_probs=28.3
Q ss_pred hHHHHHHHHHcCCceecCCCc--cCCCCHHHHHHHHhCCCe
Q psy6380 54 NPEIICIANNINVDAIHPGYG--FLSEREDFAKAVIGAALE 92 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYG--FLSEn~~Fa~~~~~~gi~ 92 (103)
.+.-++.+.+.|+|.||.+.. --.+-.++.+.+.+.|+.
T Consensus 80 ~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ 120 (230)
T 1rpx_A 80 PDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120 (230)
T ss_dssp HHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCc
Confidence 456788889999999987765 333345688888888753
No 70
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=72.49 E-value=3.1 Score=30.46 Aligned_cols=39 Identities=5% Similarity=-0.150 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcCCceecCCCc--cCCCCHHHHHHHHhCCCe
Q psy6380 54 NPEIICIANNINVDAIHPGYG--FLSEREDFAKAVIGAALE 92 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYG--FLSEn~~Fa~~~~~~gi~ 92 (103)
.++.++.+.+.|||.||-+.. -..+-..+.+.+.+.|+.
T Consensus 74 p~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~ 114 (230)
T 1tqj_A 74 PEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKK 114 (230)
T ss_dssp GGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCc
Confidence 466789999999999988876 444556788888888764
No 71
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=72.18 E-value=2.3 Score=30.53 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
+..++.+++.|||.|+-|---..+-..+.+.|.+.|+.
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~ 135 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIK 135 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCC
Confidence 78889999999999887643232333566677777754
No 72
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=71.54 E-value=4.5 Score=30.74 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=32.0
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCC-CCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLS-EREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLS-En~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++.|.+.|+.+ |.-=-||-. +..++.+.+++.|++++||+.
T Consensus 77 ~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc 123 (288)
T 1oi7_A 77 AADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNC 123 (288)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSS
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence 566677778889984 443345532 235788888999999999974
No 73
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=70.03 E-value=5.4 Score=29.02 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=30.1
Q ss_pred HHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+..++..|++.|||.|.++ +++|.+.+.++|+...
T Consensus 181 ~~~~~~~~~~~~v~~~~~~~--~~~~v~~~~~~G~~v~ 216 (258)
T 2o55_A 181 FVEQACYGDANGVSMLFHYL--TKEQVCTAHEKGLSVT 216 (258)
T ss_dssp HHHHHHHTTCSEEEEEGGGC--CHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCCeEEecChhhc--CHHHHHHHHHCCCEEE
Confidence 45558889999999999887 6889999999998653
No 74
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=68.73 E-value=5.8 Score=28.67 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=30.4
Q ss_pred HHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+.+.+++.|++.||+.|.++ ++++.+.+.++|+...
T Consensus 176 ~~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~G~~v~ 211 (247)
T 2otd_A 176 WRELTARLGCVSIHLNHKLL--DKARVMQLKDAGLRIL 211 (247)
T ss_dssp HHHHHHHHTCSEEEEEGGGC--CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCeEEecChHhC--CHHHHHHHHHCCCEEE
Confidence 45677889999999999887 5899999999998753
No 75
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=68.26 E-value=3.7 Score=32.69 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
..|.-|.+.|.+.|--=--||+++|+|++.++++|..+++
T Consensus 110 ~~I~~Al~~G~nVvsglh~~l~~~pel~~~A~~~Gv~i~d 149 (350)
T 2g0t_A 110 TLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIID 149 (350)
T ss_dssp HHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCcEEeCChhhhhCCHHHHHHHHHCCCEEEE
Confidence 4566677899988655555899999999999999998876
No 76
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=68.25 E-value=6.3 Score=28.70 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..+.+++.++++|||.|-++ +++|.+.+.++|+...
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~G~~v~ 215 (252)
T 2pz0_A 180 PWHMALRMEAYSLHPFYFNI--IPELVEGCKKNGVKLF 215 (252)
T ss_dssp THHHHHHTTCSEEEEBGGGC--CHHHHHHHHHTTCEEC
T ss_pred HHHHHHHcCCeEEecchhcC--CHHHHHHHHHCCCEEE
Confidence 34677889999999999887 6899999999998753
No 77
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=66.47 E-value=7.7 Score=29.56 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCeE---eCCC
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALEF---IGPT 97 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~F---IGP~ 97 (103)
+++.++.|++.|+|. |.|..- .-|..+|.+.|+++|+.. +.|+
T Consensus 105 ~e~F~~~~~~aGvdG~IipDLP-~eE~~~~~~~~~~~Gl~~I~lvaP~ 151 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIVPELS-FEESDDLIKECERYNIALITLVSVT 151 (252)
T ss_dssp HHHHHHHHHHTTEEEEECTTCC-GGGCHHHHHHHHHTTCEECEEEETT
T ss_pred HHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 688999999999997 567764 468999999999999753 5564
No 78
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=66.43 E-value=8.7 Score=29.05 Aligned_cols=38 Identities=5% Similarity=-0.014 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+..++.+.+.|+|.|+.+.|. .+++.+++.+.|+..+
T Consensus 85 ~~~~~~~~~~~g~d~V~~~~g~---p~~~~~~l~~~gi~vi 122 (328)
T 2gjl_A 85 YAEYRAAIIEAGIRVVETAGND---PGEHIAEFRRHGVKVI 122 (328)
T ss_dssp HHHHHHHHHHTTCCEEEEEESC---CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCC---cHHHHHHHHHcCCCEE
Confidence 5789999999999999988873 4788899988888766
No 79
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=65.40 E-value=11 Score=26.37 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
.-++.|.+.|+|.||-|- .++++.+.+.+.|+.+
T Consensus 71 ~~i~~a~~~Gad~V~~~~----~~~~~~~~~~~~g~~~ 104 (212)
T 2v82_A 71 EQVDALARMGCQLIVTPN----IHSEVIRRAVGYGMTV 104 (212)
T ss_dssp HHHHHHHHTTCCEEECSS----CCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCEEEeCC----CCHHHHHHHHHcCCCE
Confidence 357899999999999443 5788889988888753
No 80
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=65.20 E-value=0.57 Score=34.52 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.4
Q ss_pred CceecCCCc-cCCCCHHHHHHHHhCCCe
Q psy6380 66 VDAIHPGYG-FLSEREDFAKAVIGAALE 92 (103)
Q Consensus 66 ~daIHPGYG-FLSEn~~Fa~~~~~~gi~ 92 (103)
+|.||.||| |.=+|| |+++++.-|+.
T Consensus 65 vQLI~NGyG~~if~Np-~akalr~wG~~ 91 (166)
T 3vjz_A 65 VQLIASGYGEYIFRNP-LADSLRRWKIK 91 (166)
T ss_dssp HHHHHHSCHHHHHTSS-HHHHHHTTTCC
T ss_pred HhhhhcCchhHHHhCh-HHHHHHHhCch
Confidence 788999999 788999 88999887764
No 81
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=63.53 E-value=8.3 Score=28.11 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
...+.++..|+++|||.|.+++ ++|.+.+.++|+..
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~--~~~v~~~~~~G~~v 213 (252)
T 3qvq_A 178 AWQERLEHLDCAGLHIHQSFFD--VQQVSDIKAAGYKV 213 (252)
T ss_dssp THHHHHHHHTCSEEEEEGGGCC--HHHHHHHHHTTCEE
T ss_pred hHHHHHHHcCCeEEecchhhCC--HHHHHHHHHCCCEE
Confidence 3567788899999999998875 78999999999865
No 82
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=63.43 E-value=8.9 Score=28.87 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=29.7
Q ss_pred HHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+.+.++..|++.+||.|..+ ++++.+.+.++|+...
T Consensus 237 l~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~Gl~V~ 272 (313)
T 3l12_A 237 LPQAVASAGGQLWCPYFLDV--TPELVAEAHDLGLIVL 272 (313)
T ss_dssp HHHHHHHHTCSEEEEBGGGC--CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhCCcEEecchhcC--CHHHHHHHHHCCCEEE
Confidence 45667778999999999876 5889999999998753
No 83
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=62.26 E-value=13 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=35.8
Q ss_pred hHHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCe---EeCCCh
Q psy6380 54 NPEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALE---FIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~---FIGP~~ 98 (103)
+++.++.|++.|+|. |-|...+ -|..+|.+.|.++|+. ++-|++
T Consensus 114 ~~~f~~~~~~aGvdGvIipDlp~-ee~~~~~~~~~~~gl~~I~lvap~t 161 (271)
T 3nav_A 114 IDDFYQRCQKAGVDSVLIADVPT-NESQPFVAAAEKFGIQPIFIAPPTA 161 (271)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCG-GGCHHHHHHHHHTTCEEEEEECTTC
T ss_pred HHHHHHHHHHCCCCEEEECCCCH-HHHHHHHHHHHHcCCeEEEEECCCC
Confidence 488899999999998 6676665 6788999999999975 567754
No 84
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=61.39 E-value=30 Score=24.34 Aligned_cols=14 Identities=7% Similarity=0.373 Sum_probs=11.2
Q ss_pred HHcCcEEEEeeccc
Q psy6380 16 IQAGTTIIILSKRK 29 (103)
Q Consensus 16 ~~~g~tvai~t~~d 29 (103)
.++|+.||+++..|
T Consensus 91 ~~~g~~V~~l~~GD 104 (232)
T 2qbu_A 91 LEDGRDVAFITLGD 104 (232)
T ss_dssp HHTTCCEEEEESBC
T ss_pred HHCCCeEEEEeCCC
Confidence 34689999999877
No 85
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=61.01 E-value=9.3 Score=28.35 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe---EeCCC
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE---FIGPT 97 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~---FIGP~ 97 (103)
++.++.+.+.|+|.|.-.---..|-..|.+.+.++|+. ++.|+
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~ 157 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPN 157 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTT
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 78899999999996544333346788999999999853 46664
No 86
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=60.77 E-value=5.6 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCce-ecCCCccCCCCHHHHHHHHhCCCe---EeCCC
Q psy6380 55 PEIICIANNINVDA-IHPGYGFLSEREDFAKAVIGAALE---FIGPT 97 (103)
Q Consensus 55 ~~Ii~~A~~~g~da-IHPGYGFLSEn~~Fa~~~~~~gi~---FIGP~ 97 (103)
++.++.|++.|+|. |-|.... .|-.+|.+.+.++|+. ++-|+
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~-ee~~~~~~~~~~~gl~~i~l~~p~ 157 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPP-EEAEELKAVMKKYVLSFVPLGAPT 157 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCH-HHHHHHHHHHHHTTCEECCEECTT
T ss_pred HHHHHHHHHcCCCEEEECCCCH-HHHHHHHHHHHHcCCcEEEEeCCC
Confidence 78889999999995 4555443 6778899999999954 46664
No 87
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=60.65 E-value=12 Score=28.37 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCc-eecCCCccCCCCHHHHHHHHhCCC---eEeCCC
Q psy6380 55 PEIICIANNINVD-AIHPGYGFLSEREDFAKAVIGAAL---EFIGPT 97 (103)
Q Consensus 55 ~~Ii~~A~~~g~d-aIHPGYGFLSEn~~Fa~~~~~~gi---~FIGP~ 97 (103)
++-++.|++.|+| .|-|...+ .|..+|.+.+.++|+ .++-|+
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~-ee~~~~~~~~~~~gl~~i~liap~ 154 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPP-DEDPGLVRLAQEIGLETVFLLAPT 154 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCG-GGCHHHHHHHHHHTCEEECEECTT
T ss_pred HHHHHHHHHcCCCEEEecCCCH-HHHHHHHHHHHHcCCceEEEeCCC
Confidence 6778889999999 67787775 889999999999885 345565
No 88
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=60.08 E-value=17 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHcCCce--ecCCCccCC
Q psy6380 53 NNPEIICIANNINVDA--IHPGYGFLS 77 (103)
Q Consensus 53 ni~~Ii~~A~~~g~da--IHPGYGFLS 77 (103)
...+.+++|++.|+.. +|+|+|..+
T Consensus 105 ~~~~~i~~a~~lGa~~v~~~~g~~~~~ 131 (287)
T 3kws_A 105 TMKEIIAAAGELGSTGVIIVPAFNGQV 131 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCCTTCC
T ss_pred HHHHHHHHHHHcCCCEEEEecCcCCcC
Confidence 3567899999999995 579988654
No 89
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=59.95 E-value=10 Score=27.24 Aligned_cols=39 Identities=0% Similarity=0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCceecCCCccCCCC-HHHHHHHHhCCCeE
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSER-EDFAKAVIGAALEF 93 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn-~~Fa~~~~~~gi~F 93 (103)
++.++.+.+.|+|.|+-+.+-..+. ..+.+.+.+.|+..
T Consensus 77 ~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~i 116 (228)
T 1h1y_A 77 SDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRP 116 (228)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCE
Confidence 5568888889999995555555566 67788888887643
No 90
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=59.68 E-value=18 Score=25.71 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
++.+..++.+++.|.|.|=-.+-+-..-.++.+.+++.||...+
T Consensus 23 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~ 66 (269)
T 3ngf_A 23 VPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVL 66 (269)
T ss_dssp SCHHHHHHHHHHTTCSEEECSCCTTSCHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCcEEE
Confidence 57899999999999998744332223456788889999998763
No 91
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=58.23 E-value=9.2 Score=31.80 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHcCCc---eecCCCccC-CCCHHHHHHHHh
Q psy6380 53 NNPEIICIANNINVD---AIHPGYGFL-SEREDFAKAVIG 88 (103)
Q Consensus 53 ni~~Ii~~A~~~g~d---aIHPGYGFL-SEn~~Fa~~~~~ 88 (103)
.+..++++|+++||+ |||||..+- |-+.++.....|
T Consensus 59 ~l~eLv~~a~~~~V~Fv~aisPG~di~~s~~~d~~~L~~K 98 (447)
T 2xsa_A 59 RLTELRDAAAARGMVFYVSLAPCLDVTYSDPQDRAALLAR 98 (447)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCCSSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCcccCCCCHHHHHHHHHH
Confidence 478899999999987 799999853 445566555443
No 92
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=57.97 E-value=4.8 Score=29.43 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=35.0
Q ss_pred CCCChHHHHHHHHHcC--CceecCCCc-cCCCCHHHHHHHHhC
Q psy6380 50 AYLNNPEIICIANNIN--VDAIHPGYG-FLSEREDFAKAVIGA 89 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g--~daIHPGYG-FLSEn~~Fa~~~~~~ 89 (103)
.+.+.+.-++++++.+ ++.|+.|++ |+++-+++.+.+.+.
T Consensus 13 D~~~~~~a~~~~~~~~~~~~~ikvg~~lf~~~G~~~v~~l~~~ 55 (221)
T 3exr_A 13 DHSNLKGAITAAVSVGNEVDVIEAGTVCLLQVGSELVEVLRSL 55 (221)
T ss_dssp CCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCceEEEECHHHHHhcCHHHHHHHHHh
Confidence 3677899999999988 889999999 899999999998764
No 93
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=57.76 E-value=6.4 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=27.6
Q ss_pred HHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 59 CIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 59 ~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
+.+++.+++.|||.|.++ ++++.+.+.++|+..
T Consensus 157 ~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~G~~v 189 (224)
T 1vd6_A 157 ALLPCLGVEAVHPHHALV--TEEAVAGWRKRGLFV 189 (224)
T ss_dssp GGGGGSCCSEEEEBGGGC--CHHHHHHHHHTTCEE
T ss_pred HHHHHcCCcEEecCcccC--CHHHHHHHHHCCCEE
Confidence 456778999999999887 588999999999864
No 94
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=57.15 E-value=33 Score=26.41 Aligned_cols=64 Identities=16% Similarity=0.316 Sum_probs=36.7
Q ss_pred cchHHHHHcC-cEEEEeecccccc---------cccceeccc-CCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCcc
Q psy6380 10 DNYDSLIQAG-TTIIILSKRKLED---------SSLWLLRDQ-GKRMPPVAAYLNNPEIICIANNINVDA-IHPGYGF 75 (103)
Q Consensus 10 ~~~~~~~~~g-~tvai~t~~dl~~---------a~~~~~AD~-~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYGF 75 (103)
.+..+|.+.| +-++|+|.+| +- +.+...|.+ +...-.++++- -+.+++..++.++|. |-.|||.
T Consensus 17 ~~L~~L~~~~~~i~~Vvt~pd-~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~~l~~~~~Dliv~~~y~~ 92 (314)
T 1fmt_A 17 RHLDALLSSGHNVVGVFTQPD-RPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLR-PQENQQLVAELQADVMVVVAYGL 92 (314)
T ss_dssp HHHHHHHHTTCEEEEEECCCC-BC------CBCCHHHHHHHHTTCCEECCSCSC-SHHHHHHHHHTTCSEEEEESCCS
T ss_pred HHHHHHHHCCCcEEEEEeCCC-CccccccccCcCHHHHHHHHcCCcEEecCCCC-CHHHHHHHHhcCCCEEEEeeccc
Confidence 3567888888 8889999976 31 223333322 21111222332 356677777778885 4567773
No 95
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=56.70 E-value=34 Score=24.80 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.8
Q ss_pred HcCcEEEEeeccc
Q psy6380 17 QAGTTIIILSKRK 29 (103)
Q Consensus 17 ~~g~tvai~t~~d 29 (103)
++|+.||+++..|
T Consensus 94 ~~g~~Va~l~~GD 106 (259)
T 2e0n_A 94 QAGRRVAVVSVGD 106 (259)
T ss_dssp HTTCEEEEEESBC
T ss_pred HCCCeEEEEeCCC
Confidence 4689999999776
No 96
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=55.49 E-value=15 Score=26.16 Aligned_cols=37 Identities=11% Similarity=0.349 Sum_probs=34.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..|+++|+..|++.|-.|- |+.+-.+.+.+.|+.++
T Consensus 198 ~~~i~~~a~~~g~~viaeGV----Et~~~~~~l~~lG~~~~ 234 (259)
T 3s83_A 198 VRSVVKLGQDLDLEVVAEGV----ENAEMAHALQSLGCDYG 234 (259)
T ss_dssp HHHHHHHHHHTTCEEEECCC----CSHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHCCCeEEEEeC----CCHHHHHHHHhcCCCEe
Confidence 77899999999999999999 99999999999998765
No 97
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=55.37 E-value=17 Score=25.28 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+.+..++.+++.|.+.|=-..-+-..-.++.+.+++.||...
T Consensus 15 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~ 57 (260)
T 1k77_A 15 VPFIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLA 57 (260)
T ss_dssp SCGGGHHHHHHHHTCSEEECSCCTTSCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHhCCCEEEecCCCCCCHHHHHHHHHHcCCceE
Confidence 4577788888888888865433222233567788888888765
No 98
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=55.35 E-value=19 Score=26.90 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..|+++|+..|.+.|-.|- |+.+-.+.+.+.|+.++
T Consensus 222 v~~ii~la~~lg~~vvAEGV----Et~~q~~~l~~lG~d~~ 258 (294)
T 2r6o_A 222 VTTILALARGLGMEVVAEGI----ETAQQYAFLRDRGCEFG 258 (294)
T ss_dssp HHHHHHHHHHTTCEEEECCC----CSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHCCCEEEEecC----CcHHHHHHHHHcCCCEE
Confidence 67899999999999999999 99999999999999764
No 99
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=55.25 E-value=18 Score=25.61 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
-++.+..++.+++.|.+.|--. ++..+-.++.+.+++.||....
T Consensus 30 ~~~~~~~l~~~~~~G~~~vEl~-~~~~~~~~~~~~l~~~gl~~~~ 73 (301)
T 3cny_A 30 DNNLQQLLSDIVVAGFQGTEVG-GFFPGPEKLNYELKLRNLEIAG 73 (301)
T ss_dssp TCCHHHHHHHHHHHTCCEECCC-TTCCCHHHHHHHHHHTTCEECE
T ss_pred CCCHHHHHHHHHHhCCCEEEec-CCCCCHHHHHHHHHHCCCeEEE
Confidence 4678999999999999998654 3333445688888999998653
No 100
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=55.03 E-value=12 Score=27.16 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.++. .=++.|.+.|||.||-| + .+++..+.|.+.|+.+|
T Consensus 75 vi~~-d~~~~A~~aGAd~v~~p-~---~d~~v~~~~~~~g~~~i 113 (214)
T 1wbh_A 75 VLNP-QQLAEVTEAGAQFAISP-G---LTEPLLKAATEGTIPLI 113 (214)
T ss_dssp CCSH-HHHHHHHHHTCSCEEES-S---CCHHHHHHHHHSSSCEE
T ss_pred EEEH-HHHHHHHHcCCCEEEcC-C---CCHHHHHHHHHhCCCEE
Confidence 4444 55688889999999966 3 68999999999998766
No 101
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=54.48 E-value=12 Score=27.24 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=29.4
Q ss_pred HHHHHHHcCC--ceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 57 IICIANNINV--DAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 57 Ii~~A~~~g~--daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+.+.+++.|+ +.|||.|-++ +++|.+.+.++|+...
T Consensus 203 ~~~~~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~Gl~v~ 240 (272)
T 3ch0_A 203 LKKQLEKLSFTPAVYSPDVTLV--SKKDIDAAHKLGMRVI 240 (272)
T ss_dssp HHHHHTTSSSCCSEEEEBGGGC--CHHHHHHHHHTTCEEC
T ss_pred HHHHHHHcCCCCcEEccchhhc--CHHHHHHHHHcCCEEE
Confidence 4456777888 9999999887 5889999999998753
No 102
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=54.13 E-value=21 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+.+.+++++.+.|+|.|+-+.|. .+++.+++.+.|+.++
T Consensus 90 ~~~~~~~~~~~~g~d~V~l~~g~---p~~~~~~l~~~g~~v~ 128 (326)
T 3bo9_A 90 WADDLVKVCIEEKVPVVTFGAGN---PTKYIRELKENGTKVI 128 (326)
T ss_dssp THHHHHHHHHHTTCSEEEEESSC---CHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHCCCCEEEECCCC---cHHHHHHHHHcCCcEE
Confidence 35889999999999999987773 4778888888887655
No 103
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=54.12 E-value=9.8 Score=30.31 Aligned_cols=48 Identities=8% Similarity=-0.096 Sum_probs=34.3
Q ss_pred CCCCCCC--hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 47 PVAAYLN--NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 47 ~~~sYln--i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
+...+|. .-..|.-|.+.|.+.|--=-.||+++|+|.+++++ |..+++
T Consensus 83 ~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l~~~pel~~~A~~-g~~i~d 132 (349)
T 2obn_A 83 PKGGGIPDDYWIELKTALQAGMSLVNGLHTPLANIPDLNALLQP-GQLIWD 132 (349)
T ss_dssp CCCC-SCGGGHHHHHHHHHTTCEEEECSSSCCTTCHHHHHHCCT-TCCEEE
T ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEeCccchhhCCHHHHHHHHc-CCEEEE
Confidence 3455654 44556667789998764433499999999999988 888764
No 104
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=53.93 E-value=14 Score=28.80 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=51.1
Q ss_pred EEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCcee--cC--CCccCCCCHHHHHHHHhCCCeEeCCC
Q psy6380 23 IILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAI--HP--GYGFLSEREDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 23 ai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daI--HP--GYGFLSEn~~Fa~~~~~~gi~FIGP~ 97 (103)
|++|+.- ...+++++.--..-........++.-++..+.+|+.+| +| |.-.|-|-...+++|.++|+ ++=|+
T Consensus 118 aLvsPTG--~~G~VkIsTGp~Ss~~~~~~V~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~-~lEPT 193 (249)
T 3m0z_A 118 GLVSPTG--TPGMVKISTGPLSSGAADGIVPLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDF-WLEPT 193 (249)
T ss_dssp EEEBCCS--STTEEECCCSTTGGGSSCCEEEHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTC-EEEEB
T ss_pred EEEcCCC--ccceEEeccCccccCCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc-eECCC
Confidence 5667654 44555543211110123357889999999999999996 34 55588999999999999999 87765
No 105
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=53.71 E-value=8.7 Score=26.87 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
-+..|+++|++.|...|-.|- |+++-.+.+.+.|+.+
T Consensus 187 ~~~~i~~~a~~lg~~viaeGV----Et~~~~~~l~~~G~~~ 223 (235)
T 3kzp_A 187 FIKAWANFAQKNKLDFVVEGI----ETKETMTLLESHGVSI 223 (235)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE----CSTHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHcCCEEEEEEe----cCHHHHHHHHHcCCCE
Confidence 367889999999999999999 9999999999999864
No 106
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=53.54 E-value=15 Score=27.02 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=45.3
Q ss_pred HHHHHcCcEEEEeecccccccccce-ecccCCCCC-CCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 13 DSLIQAGTTIIILSKRKLEDSSLWL-LRDQGKRMP-PVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 13 ~~~~~~g~tvai~t~~dl~~a~~~~-~AD~~~~~~-~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..|.+.|=++.=++.........++ ++.+.+... ....-++. .-++.|.+.|||.||-| + .+++..+.+.+.|
T Consensus 45 ~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagtvl~~-d~~~~A~~aGAd~v~~p-~---~d~~v~~~~~~~g 119 (225)
T 1mxs_A 45 DALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDR-SMFAAVEAAGAQFVVTP-G---ITEDILEAGVDSE 119 (225)
T ss_dssp HHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSH-HHHHHHHHHTCSSEECS-S---CCHHHHHHHHHCS
T ss_pred HHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCeEeeH-HHHHHHHHCCCCEEEeC-C---CCHHHHHHHHHhC
Confidence 3556667445455544321112222 333332110 01123433 56788899999999977 3 6899999999999
Q ss_pred CeEe
Q psy6380 91 LEFI 94 (103)
Q Consensus 91 i~FI 94 (103)
+.+|
T Consensus 120 ~~~i 123 (225)
T 1mxs_A 120 IPLL 123 (225)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 8776
No 107
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=52.59 E-value=28 Score=24.72 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=17.6
Q ss_pred hHHHHHHHHHcCCcee----cCCCc
Q psy6380 54 NPEIICIANNINVDAI----HPGYG 74 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI----HPGYG 74 (103)
..+.+++|++.|+..| |+|||
T Consensus 90 ~~~~i~~a~~lG~~~v~~~~~~~~~ 114 (294)
T 3vni_A 90 YTDLLKRLYKLDVHLIGGALYSYWP 114 (294)
T ss_dssp HHHHHHHHHHHTCCEEEESTTSCSS
T ss_pred HHHHHHHHHHhCCCeeeccccCCCC
Confidence 5568999999999987 67876
No 108
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=51.82 E-value=19 Score=26.45 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-+ ...=++.|.+.|||.||-| + .+++..+.|++.|+.+|
T Consensus 76 vl-~~d~~~~A~~aGAd~v~~p-~---~d~~v~~~ar~~g~~~i 114 (224)
T 1vhc_A 76 VL-TAEQVVLAKSSGADFVVTP-G---LNPKIVKLCQDLNFPIT 114 (224)
T ss_dssp CC-SHHHHHHHHHHTCSEEECS-S---CCHHHHHHHHHTTCCEE
T ss_pred Ee-eHHHHHHHHHCCCCEEEEC-C---CCHHHHHHHHHhCCCEE
Confidence 44 3456788899999999966 2 67888888888887543
No 109
>3tlq_A Regulatory protein YDIV; anti-FLHD4C2 factor, repress motility, transcription; 1.91A {Escherichia coli}
Probab=51.78 E-value=14 Score=26.43 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=33.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..|+++|++.|.+.|-.|- |+.+=.+.+.+.|+.++
T Consensus 187 v~~ii~~a~~l~~~vvAEGV----Et~~q~~~l~~lG~~~~ 223 (242)
T 3tlq_A 187 IRAIQAQISPCCNCIIAGGI----DTAEILAQITPFDFHAL 223 (242)
T ss_dssp HHHHHHHHTTTCSEEEECCC----CSHHHHHHHGGGCCSEE
T ss_pred HHHHHHHHHHcCCEEEEEeC----CcHHHHHHHHHcCCCEE
Confidence 67899999999999999999 99999999999988765
No 110
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=51.66 E-value=34 Score=24.00 Aligned_cols=43 Identities=5% Similarity=0.009 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHcCCceecCCCccC--CCC----HHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFL--SER----EDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFL--SEn----~~Fa~~~~~~gi~FI 94 (103)
++.+..++.+++.|.+.|--....+ .-. .++.+.++++||...
T Consensus 30 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 78 (257)
T 3lmz_A 30 FDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGY 78 (257)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 3799999999999999974332222 112 478888999999865
No 111
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=50.14 E-value=17 Score=27.80 Aligned_cols=40 Identities=10% Similarity=0.264 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..=+..|+++|+..|.+.|-.|- |+++=.+.+.+.|+.++
T Consensus 268 ~~iv~~ii~la~~lg~~vvAEGV----Et~~q~~~L~~lG~d~~ 307 (340)
T 4hjf_A 268 AKIVRSVVKLGQDLDLEVVAEGV----ENAEMAHALQSLGCDYG 307 (340)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECC----CSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeC----CcHHHHHHHHHcCCCEe
Confidence 33478899999999999999998 99999999999999876
No 112
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=49.73 E-value=7.3 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=29.7
Q ss_pred HHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 57 IICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
..+.+++.++++||+.|-++ .++++.+.+.++|+..
T Consensus 162 ~~~~~~~~~~~~i~~~~~~~-~~~~~v~~~~~~G~~v 197 (248)
T 1zcc_A 162 PSLVGAVHHASIIEITPAQM-RRPGIIEASRKAGLEI 197 (248)
T ss_dssp THHHHHTTCCSEEEECHHHH-HSHHHHHHHHHHTCEE
T ss_pred HHHHHHHcCCCEEEecHHHh-CCHHHHHHHHHCCCEE
Confidence 35678889999999999877 3688999999999864
No 113
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=49.53 E-value=15 Score=26.12 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..-+..|+++|+..|+..|-.|- |+++-.+.+.+.|+.++
T Consensus 199 ~~~l~~i~~~a~~l~~~viaeGV----Et~~~~~~l~~~G~~~~ 238 (250)
T 4f3h_A 199 QEKIREITSRAQPTGILTVAEFV----ADAQSMSSFFTAGVDYV 238 (250)
T ss_dssp HHHHHHTHHHHHHHTCEEEECCC----CCHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecc----CCHHHHHHHHHcCCCEE
Confidence 33478899999999999999999 99999999999998765
No 114
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=48.92 E-value=7.7 Score=28.17 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=38.9
Q ss_pred hHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
..+|++.| +++++....+.........+|+.... +.|.+ +.+ ++ .+|.|+|+..++. ....+.+++.|
T Consensus 17 ~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d-~~l---~~--~~d~i~~~~e~~~--~~~~~~le~~g 85 (334)
T 2r85_A 17 LKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIE---EKYPE-EEL---LN--LNAVVVPTGSFVA--HLGIELVENMK 85 (334)
T ss_dssp HHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEEC---SSCCH-HHH---HH--TTEEECCCTTHHH--HHCHHHHHTCC
T ss_pred HHHHHhCCCEEEEEECCCCCcccccccccCceEec---CCcCh-HHh---cc--cCCEEEECcchhh--hhHHHHHHHcC
Confidence 46899999 66655554331000022334432211 12333 322 22 3588998843321 12234567899
Q ss_pred CeEeCCChhhh
Q psy6380 91 LEFIGPTTNVL 101 (103)
Q Consensus 91 i~FIGP~~~~m 101 (103)
+.++++ ++++
T Consensus 86 ~~~~~~-~~~~ 95 (334)
T 2r85_A 86 VPYFGN-KRVL 95 (334)
T ss_dssp SCBBSC-TTHH
T ss_pred CCccCC-HHHH
Confidence 987754 4544
No 115
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=48.74 E-value=31 Score=28.13 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHcCCcee------cCCCc--------cCCCC--------HHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAI------HPGYG--------FLSER--------EDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daI------HPGYG--------FLSEn--------~~Fa~~~~~~gi~FI 94 (103)
-.|.+..++++|++|+..| |-|+- +.|-+ .+|+++|++.||.|.
T Consensus 104 ~fDp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~G 169 (455)
T 2zxd_A 104 KWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFG 169 (455)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeEE
Confidence 5799999999999999975 33432 22322 379999999999985
No 116
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=48.54 E-value=15 Score=25.50 Aligned_cols=39 Identities=5% Similarity=-0.040 Sum_probs=25.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.+.-++.+.+.|+|.|+-+.+-..+-..+.+.+.+.|+.
T Consensus 73 ~~~~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~ 111 (220)
T 2fli_A 73 PERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMK 111 (220)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCc
Confidence 343459999999999954444333334677888777754
No 117
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=47.74 E-value=21 Score=22.86 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+|+++|++.|+-.+ ||+.+++.+-
T Consensus 29 A~~I~~~A~e~~VPi~--------e~~~LAr~L~ 54 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVI--------EDIPLARSLD 54 (83)
T ss_dssp HHHHHHHHHHTTCCEE--------ECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEE--------eCHHHHHHHH
Confidence 6899999999998654 9999999997
No 118
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=47.68 E-value=19 Score=26.22 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=28.7
Q ss_pred HHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe---EeCCC
Q psy6380 59 CIANNINVDAIHPGYGFLSEREDFAKAVIGAALE---FIGPT 97 (103)
Q Consensus 59 ~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~---FIGP~ 97 (103)
+.|++.|+|.||-+-.-+.|-.++.+.+.++|+. ++-|.
T Consensus 112 ~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~ 153 (262)
T 1rd5_A 112 AKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPA 153 (262)
T ss_dssp HHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTT
T ss_pred HHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCC
Confidence 3488899998887766666767888888888843 45554
No 119
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=47.67 E-value=21 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~ 97 (103)
+.+|+.+|++.|..+.. +..+++.++.....|+.|+--+
T Consensus 199 ~~~iv~aa~aaG~~~~v-----~~~d~~~a~~~~~~G~~~~s~~ 237 (267)
T 2vws_A 199 IETSIRRIRAAGKAAGF-----LAVAPDMAQQCLAWGANFVAVG 237 (267)
T ss_dssp HHHHHHHHHHTTCEEEE-----ECSSHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCCeEEE-----ecCCHHHHHHHHHCCCCEEEEc
Confidence 36789999999987632 3459999999999999887433
No 120
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=47.63 E-value=6 Score=28.78 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 59 CIANNINVDAIHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 59 ~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
..++..+++.+++.|..+..+++|.+.+.++|+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v 199 (238)
T 3no3_A 165 MELKELGFTGLDYHYKVLQSHPDWVKDCKVLGMTS 199 (238)
T ss_dssp HHHHHTTCCEEEEEHHHHHHSTTHHHHHHHTTCEE
T ss_pred HHHHHCCCceEeccHHhhhCCHHHHHHHHHCCCEE
Confidence 34678899999999988878889999999999864
No 121
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=47.28 E-value=22 Score=25.32 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FI 94 (103)
++.+..++.+++.|.+.|--... +-.+-.++.+.++++||.+.
T Consensus 38 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gl~v~ 81 (287)
T 3kws_A 38 ESLNEKLDFMEKLGVVGFEPGGGGLAGRVNEIKQALNGRNIKVS 81 (287)
T ss_dssp SSHHHHHHHHHHTTCCEEECBSTTCGGGHHHHHHHHTTSSCEEC
T ss_pred CCHHHHHHHHHHcCCCEEEecCCchHHHHHHHHHHHHHcCCeEE
Confidence 46888899999999888765544 33344567777888888774
No 122
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=47.14 E-value=28 Score=25.55 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHcCCcee---cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAI---HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daI---HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-+|.+.|.++.++.+..+| +|.+|...+=.++++.|+++|+.+|
T Consensus 158 ~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li 204 (425)
T 3ecd_A 158 LIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLM 204 (425)
T ss_dssp SCCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEE
T ss_pred ccCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEE
Confidence 5688888887765454443 4778877777888999998888765
No 123
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=46.91 E-value=22 Score=23.44 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+|+++|++.|+-.+ ||+.+++.+-
T Consensus 29 A~~I~e~A~e~gVPi~--------e~~~LAr~Ly 54 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTV--------RDVKLARKLY 54 (93)
T ss_dssp HHHHHHHHHHTTCCEE--------ECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEE--------ECHHHHHHHH
Confidence 6899999999998654 9999999997
No 124
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=46.73 E-value=13 Score=29.91 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=30.9
Q ss_pred CCCCChHHHHHHHHHcCCceecCC-------------CccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPG-------------YGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPG-------------YGFLSEn~~Fa~~~~~~gi~FI 94 (103)
++.-..-.+++.+++.|+|+|-.+ .|. .+...+.+.|++.||.|+
T Consensus 153 es~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~-egl~~L~~~~~~~Gl~~~ 210 (385)
T 3nvt_A 153 ESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGL-EGLKILKRVSDEYGLGVI 210 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTH-HHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCH-HHHHHHHHHHHHcCCEEE
Confidence 343345566777889999999433 332 445667788888999886
No 125
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=46.17 E-value=58 Score=25.13 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=35.6
Q ss_pred chHHHHHcC-cEEEEeecccccc---------cccceeccc-CCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCcc
Q psy6380 11 NYDSLIQAG-TTIIILSKRKLED---------SSLWLLRDQ-GKRMPPVAAYLNNPEIICIANNINVDA-IHPGYGF 75 (103)
Q Consensus 11 ~~~~~~~~g-~tvai~t~~dl~~---------a~~~~~AD~-~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYGF 75 (103)
+..+|.+.| +-|+|+|.+| +- +.+...|.+ +...-.++++- -+.+++..++.++|. |-.|||.
T Consensus 22 ~L~~L~~~~~~v~~Vvt~pd-~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 22 HLAALLSSEHEIIAVYTQPE-RPAGRGKKLTASPVKTLALEHNVPVYQPENFK-SDESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHTSSSEEEEEECCCC----------CCCHHHHHHHHTTCCEECCSCSC-SHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHCCCcEEEEEcCCC-CcccccccCCCCHHHHHHHHcCCCEEccCcCC-CHHHHHHHHhcCCCEEEEeCccc
Confidence 456788888 8899999876 21 222233322 21111223332 246777777788886 4478874
No 126
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=46.01 E-value=22 Score=27.09 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=30.3
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~ 97 (103)
+.+|+.+|++.|..+ |.+.-+++.++...+.|+.|+-=+
T Consensus 220 ~~~iv~aaraaG~~~-----gv~~~d~~~a~~~~~~G~~~~s~~ 258 (287)
T 2v5j_A 220 IEQAIVQIRESGKAP-----GILIANEQLAKRYLELGALFVAVG 258 (287)
T ss_dssp HHHHHHHHHHTTSEE-----EEECCCHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCee-----EEecCCHHHHHHHHHhCCCEEEEC
Confidence 367899999999875 224559999999999999887433
No 127
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=45.92 E-value=20 Score=28.10 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=27.3
Q ss_pred HHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc
Q psy6380 14 SLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF 75 (103)
Q Consensus 14 ~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF 75 (103)
.+++.| +||+..|...+ + -|.+.+.++|+++|+. |+.+.|+
T Consensus 94 ~~~~aGv~tiV~~t~~g~-------------g-------r~~~~l~~la~~~gv~-i~~~tG~ 135 (364)
T 3k2g_A 94 QFAAVGGRSIVDPTCRGI-------------G-------RDPVKLRRISAETGVQ-VVMGAGY 135 (364)
T ss_dssp HHHHTTCCEEEECCCBTT-------------T-------CCHHHHHHHHHHHCCE-EEECCSB
T ss_pred HHHhcCCCeEEEeCCCcc-------------c-------CCHHHHHHHHHHhCCc-EEEEeCc
Confidence 378888 88877773221 0 1578999999999964 4445554
No 128
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=45.82 E-value=18 Score=25.98 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.++ ..-+++|.+.|+|.||-| + .+.+..+.+.+.|+.+|
T Consensus 70 vl~-~d~~~~A~~~GAd~v~~~-~---~d~~v~~~~~~~g~~~i 108 (207)
T 2yw3_A 70 VRS-PKEAEAALEAGAAFLVSP-G---LLEEVAALAQARGVPYL 108 (207)
T ss_dssp CCS-HHHHHHHHHHTCSEEEES-S---CCHHHHHHHHHHTCCEE
T ss_pred Eee-HHHHHHHHHcCCCEEEcC-C---CCHHHHHHHHHhCCCEE
Confidence 453 456788999999999976 2 57889899988887655
No 129
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=45.62 E-value=7 Score=28.32 Aligned_cols=36 Identities=6% Similarity=0.088 Sum_probs=28.1
Q ss_pred HHHHHHcCC---ceecCCCccC--CCCHHHHHHHHhCCCeE
Q psy6380 58 ICIANNINV---DAIHPGYGFL--SEREDFAKAVIGAALEF 93 (103)
Q Consensus 58 i~~A~~~g~---daIHPGYGFL--SEn~~Fa~~~~~~gi~F 93 (103)
.+.+++.++ +.|+|.|.++ +.+++|.+.+.++|+..
T Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~v~~~~~~G~~v 201 (234)
T 1o1z_A 161 ENFVERVEKERPYSLHVPYQAFELEYAVEVLRSFRKKGIVI 201 (234)
T ss_dssp HHHHHHHHHHCCSEEEEEGGGGGSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCCCCCEEEeCHHHhcCCccHHHHHHHHHcCCEE
Confidence 344555555 9999999888 55589999999999875
No 130
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=45.60 E-value=37 Score=21.88 Aligned_cols=13 Identities=8% Similarity=0.048 Sum_probs=6.0
Q ss_pred HHHHHHHHHcCCc
Q psy6380 55 PEIICIANNINVD 67 (103)
Q Consensus 55 ~~Ii~~A~~~g~d 67 (103)
..+++.+++.|++
T Consensus 98 ~~l~~~~~~~gi~ 110 (117)
T 3hh1_A 98 YTMASAAHAAGLP 110 (117)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCc
Confidence 3444444444444
No 131
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=44.88 E-value=25 Score=28.52 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=33.2
Q ss_pred CCCCChHHHHHHHHHcCCcee-----------cCC---------Cc----------cCC--CCHHHHHHHHhCCCeEeC
Q psy6380 49 AAYLNNPEIICIANNINVDAI-----------HPG---------YG----------FLS--EREDFAKAVIGAALEFIG 95 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daI-----------HPG---------YG----------FLS--En~~Fa~~~~~~gi~FIG 95 (103)
.|.-..-+++++|++.|||+| .|- || .|+ +...+.+.|++.||.|+=
T Consensus 41 Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~s 119 (385)
T 1vli_A 41 GKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLS 119 (385)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEE
Confidence 456667789999999999986 331 22 123 346778889999999863
No 132
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=44.81 E-value=69 Score=24.59 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=34.5
Q ss_pred hHHHHHcC-cEEEEeecccccc---------cccceeccc-CCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCcc
Q psy6380 12 YDSLIQAG-TTIIILSKRKLED---------SSLWLLRDQ-GKRMPPVAAYLNNPEIICIANNINVDA-IHPGYGF 75 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~---------a~~~~~AD~-~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYGF 75 (103)
..+|.+.| +-|+|+|.+| +- +.+...|.+ +...-.++++- -+.+++..++.++|. |-.|||.
T Consensus 18 L~~L~~~~~~v~~Vvt~pd-~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~-~~~~~~~l~~~~~Dliv~~~~~~ 91 (314)
T 3tqq_A 18 LRALIDSSHRVLAVYTQPD-RPSGRGQKIMESPVKEIARQNEIPIIQPFSLR-DEVEQEKLIAMNADVMVVVAYGL 91 (314)
T ss_dssp HHHHHHSSSEEEEEECCCC-----------CCHHHHHHHHTTCCEECCSCSS-SHHHHHHHHTTCCSEEEEESCCS
T ss_pred HHHHHHCCCeEEEEEeCCC-CccccCCccCCCHHHHHHHHcCCCEECcccCC-CHHHHHHHHhcCCCEEEEcCccc
Confidence 56788888 8899999876 32 222233322 21111223332 245667777777775 4567773
No 133
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=44.41 E-value=34 Score=23.79 Aligned_cols=41 Identities=5% Similarity=0.000 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHcCCceecCC--Cc--c---CCCCHHHHHHHHhCCCeE
Q psy6380 53 NNPEIICIANNINVDAIHPG--YG--F---LSEREDFAKAVIGAALEF 93 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPG--YG--F---LSEn~~Fa~~~~~~gi~F 93 (103)
+.+..++.+++.|.+.|=-. .. . -.+-.++.+.+++.||..
T Consensus 20 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 67 (272)
T 2q02_A 20 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEI 67 (272)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeE
Confidence 45666666666666654221 10 0 112234555566666655
No 134
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=43.92 E-value=9.9 Score=26.32 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=26.9
Q ss_pred CCChHHHHHHHHHc--CCceecCCCcc-CCCCHHHHHHHHhC
Q psy6380 51 YLNNPEIICIANNI--NVDAIHPGYGF-LSEREDFAKAVIGA 89 (103)
Q Consensus 51 Ylni~~Ii~~A~~~--g~daIHPGYGF-LSEn~~Fa~~~~~~ 89 (103)
+.+.+..++++++. |++.|+.|++| +++-+++.+.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~iev~~~~~~~~g~~~i~~l~~~ 50 (207)
T 3ajx_A 9 LLSTEAALELAGKVAEYVDIIELGTPLIKAEGLSVITAVKKA 50 (207)
T ss_dssp CSCHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccCCEEEECcHHHHhhCHHHHHHHHHh
Confidence 34566666666554 45888888884 77777777777654
No 135
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=43.80 E-value=28 Score=24.92 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-+..|+..|+..|...|-.|- |+++-.+.+.+.|+.++
T Consensus 210 ~l~~ii~~~~~~~~~viaeGV----Et~~~~~~l~~lG~~~~ 247 (268)
T 3hv8_A 210 ILKGLIAELHEQQKLSIVPFV----ESASVLATLWQAGATYI 247 (268)
T ss_dssp HHHHHHHHHHHTTCEEEECCC----CSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEee----CCHHHHHHHHHcCCCEe
Confidence 367889999999999999997 99999999999998765
No 136
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=43.65 E-value=19 Score=25.18 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=26.9
Q ss_pred CChHHHHHHHHHcCCceecCCCccC------CCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFL------SEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFL------SEn~~Fa~~~~~~gi~FI 94 (103)
++.+..++.+++.|.+.|=-..... .+-.++.+.+++.||...
T Consensus 16 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 64 (281)
T 3u0h_A 16 TSLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLA 64 (281)
T ss_dssp CCHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEEC
T ss_pred CCHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceE
Confidence 3567777777788877765443322 223456677777777764
No 137
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=43.04 E-value=26 Score=26.74 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
=+..|+++|+..|...|-.|- |+.+-.+.+.+.|+.++
T Consensus 334 ~v~~i~~~a~~l~~~vvaEGV----Et~~~~~~l~~~g~~~~ 371 (400)
T 3sy8_A 334 VISSVVALAQALGISLVVEGV----ESDEQRVRLIELGCSIA 371 (400)
T ss_dssp HHHHHHHHHHHHTCEEEECCC----CCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHcCCeEEEecC----CcHHHHHHHHHcCCCEE
Confidence 377899999999999999999 99999999999998765
No 138
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=42.89 E-value=32 Score=26.39 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
=+..|+++|+..|...|-.|- |+++-.+.+.+.|+.++
T Consensus 381 ~~~~i~~~a~~l~~~viaeGV----Et~~~~~~l~~~g~~~~ 418 (430)
T 3pjx_A 381 FIEAIQRAAHSIDLPLIAERV----ETEGELSVIREMGLYGV 418 (430)
T ss_dssp HHHHHHHHHHTTTCCEEECCC----CCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHCCCcEEEEec----CCHHHHHHHHHcCCCee
Confidence 378899999999999999999 99999999999998765
No 139
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=42.73 E-value=20 Score=27.17 Aligned_cols=36 Identities=11% Similarity=-0.068 Sum_probs=26.8
Q ss_pred HHHHHHcCCceecCCCccCC--CCHHHHHHHHhCCCeE
Q psy6380 58 ICIANNINVDAIHPGYGFLS--EREDFAKAVIGAALEF 93 (103)
Q Consensus 58 i~~A~~~g~daIHPGYGFLS--En~~Fa~~~~~~gi~F 93 (103)
++.|+..|||+||=|-..|+ +-.+|.+.+.+.|+..
T Consensus 128 v~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~ 165 (272)
T 3qja_A 128 IHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTA 165 (272)
T ss_dssp HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcE
Confidence 67888999999998777665 3345667777778764
No 140
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=42.62 E-value=19 Score=24.95 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=6.0
Q ss_pred HHHHHHcCCceec
Q psy6380 58 ICIANNINVDAIH 70 (103)
Q Consensus 58 i~~A~~~g~daIH 70 (103)
++.|.+.|+|.|.
T Consensus 70 ~~~~~~~Gad~v~ 82 (211)
T 3f4w_A 70 SQLLFDAGADYVT 82 (211)
T ss_dssp HHHHHHTTCSEEE
T ss_pred HHHHHhcCCCEEE
Confidence 4444444444433
No 141
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=42.36 E-value=24 Score=24.50 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHcCCceecCC-Ccc----C--CCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPG-YGF----L--SEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPG-YGF----L--SEn~~Fa~~~~~~gi~FI 94 (103)
.+.+.+++.+++.|.+.|=-. ... + ..-.++.+.++++||...
T Consensus 14 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 63 (278)
T 1i60_A 14 SNLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPL 63 (278)
T ss_dssp CCHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCee
Confidence 457778888888888775433 221 1 223457777777887654
No 142
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=42.07 E-value=32 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+.+|+.+|++.|..+.. +.-+++.++...+.|+.|+--++
T Consensus 199 ~~~iv~aa~a~G~~~~v-----~~~d~~~~~~~~~~G~~~~s~~~ 238 (256)
T 1dxe_A 199 IQHIFNRASAHGKPSGI-----LAPVEADARRYLEWGATFVAVGS 238 (256)
T ss_dssp HHHHHHHHHHTTCCEEE-----ECCSHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCceEE-----ecCCHHHHHHHHHcCCCEEEech
Confidence 57799999999987632 34589999999999998874443
No 143
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=41.59 E-value=14 Score=27.53 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 55 PEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
+.|.+.++ .+|++++ .+|+-..-+.+.+.++..| .++|+++++++
T Consensus 61 ~~l~~~~~--~~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~ 106 (305)
T 3df7_A 61 DSMEKYLE--KSDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIA 106 (305)
T ss_dssp GGHHHHHT--TCSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHH
T ss_pred HHHHHHHH--hcCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHH
Confidence 45666665 5565443 4444444456777778888 89999999875
No 144
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=40.81 E-value=52 Score=23.28 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=15.9
Q ss_pred hHHHHHHHHHcCCcee--cCCC
Q psy6380 54 NPEIICIANNINVDAI--HPGY 73 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI--HPGY 73 (103)
..+.+++|++.|+..| |+|+
T Consensus 104 ~~~~i~~a~~lG~~~v~~~~G~ 125 (290)
T 3tva_A 104 MKEISDFASWVGCPAIGLHIGF 125 (290)
T ss_dssp HHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCEEEEcCCC
Confidence 5688999999999975 4554
No 145
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=40.77 E-value=71 Score=23.52 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=11.4
Q ss_pred HHHcCcEEEEeeccc
Q psy6380 15 LIQAGTTIIILSKRK 29 (103)
Q Consensus 15 ~~~~g~tvai~t~~d 29 (103)
+.++|+.||+++-.|
T Consensus 72 ~~~~G~~Va~L~~GD 86 (264)
T 3ndc_A 72 AHAAGQDVARLHSGD 86 (264)
T ss_dssp HHHHTCCEEEEESBC
T ss_pred HHHCCCeEEEEeCCC
Confidence 345788899998776
No 146
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=40.48 E-value=12 Score=27.99 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=29.5
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHH-HHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFA-KAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa-~~~~~~gi~FIG 95 (103)
+.+|+.+|++.|..+ |.+.-+|+++ +++.+.|+.|+-
T Consensus 197 ~~~iv~aa~aaG~~~-----g~~~~~~~~~~~~~~~~G~~~~s 234 (261)
T 3qz6_A 197 YEKVYRAADRQGVVK-----GFFTAADAAKMGWAVERGAQMLL 234 (261)
T ss_dssp HHHHHHHHHHHTCEE-----EEEESSCGGGGHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCCE-----EEEeCCHHHHHHHHHHCCCCEEE
Confidence 467899999999765 3345688898 888999999863
No 147
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=40.42 E-value=14 Score=29.09 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=29.6
Q ss_pred hHHHHHHHHHcCCceecC-CCccCCC-CHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHP-GYGFLSE-REDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHP-GYGFLSE-n~~Fa~~~~~~gi~FIGP~~ 98 (103)
.+.+++++.+.|+.+|.- -=||=-+ -.++.+.+++.|++.|||+.
T Consensus 93 ~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliGPNc 139 (334)
T 3mwd_B 93 YDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPAT 139 (334)
T ss_dssp HHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEccCC
Confidence 377888888788865432 2333211 13466677889999999974
No 148
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=40.12 E-value=30 Score=26.21 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+..++.+++.|+|.|+-+.|. ..++.+++.+.|+..+
T Consensus 77 ~~~~~~~a~~~g~d~V~~~~g~---p~~~i~~l~~~g~~v~ 114 (332)
T 2z6i_A 77 VEDIVDLVIEEGVKVVTTGAGN---PSKYMERFHEAGIIVI 114 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSC---GGGTHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCC---hHHHHHHHHHcCCeEE
Confidence 6788999999999999887763 2456666766666543
No 149
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=40.01 E-value=18 Score=25.16 Aligned_cols=42 Identities=5% Similarity=-0.058 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHcCCceec-CCC----------------------ccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIH-PGY----------------------GFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIH-PGY----------------------GFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+++.++.+|+.|+.+|= |+. .++..-..|.+.|.+.||..|
T Consensus 43 ~~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vi 107 (351)
T 3vup_A 43 RIEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVF 107 (351)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCcEEEECcccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCeEE
Confidence 367789999999999862 211 122223678899999999875
No 150
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=39.87 E-value=23 Score=27.90 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=50.7
Q ss_pred EEeecccccccccceecccCCC--CCCCCCCCChHHHHHHHHHcCCcee--cC--CCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 23 IILSKRKLEDSSLWLLRDQGKR--MPPVAAYLNNPEIICIANNINVDAI--HP--GYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 23 ai~t~~dl~~a~~~~~AD~~~~--~~~~~sYlni~~Ii~~A~~~g~daI--HP--GYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
|++|+.- ....++++.- |. -........++.-++..+.+|+.+| +| |.-.|-|-...+++|.++|+ ++=|
T Consensus 140 aLVSPTG--~~G~VkISTG-p~Sas~~~~~~V~vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~-~lEP 215 (275)
T 3m6y_A 140 SLVSPTG--KVGYVNISTG-PISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGF-ALEP 215 (275)
T ss_dssp EEEBCCS--STTEEECCCS-TTGGGSSSCCEEEHHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTC-EEEE
T ss_pred EEEcCCC--CcceEEeccC-CCccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc-eECC
Confidence 5667654 4455554321 11 0122358889999999999999996 34 55578999999999999999 7766
Q ss_pred C
Q psy6380 97 T 97 (103)
Q Consensus 97 ~ 97 (103)
+
T Consensus 216 T 216 (275)
T 3m6y_A 216 T 216 (275)
T ss_dssp B
T ss_pred C
Confidence 5
No 151
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=39.84 E-value=41 Score=23.10 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-.+.+.+ +.|.+.|+|.| -+.+|- +++.+.|.+.|+..+
T Consensus 70 v~~~~~~-~~a~~~Gad~i-v~~~~~---~~~~~~~~~~g~~vi 108 (205)
T 1wa3_A 70 VTSVEQC-RKAVESGAEFI-VSPHLD---EEISQFCKEKGVFYM 108 (205)
T ss_dssp CCSHHHH-HHHHHHTCSEE-ECSSCC---HHHHHHHHHHTCEEE
T ss_pred cCCHHHH-HHHHHcCCCEE-EcCCCC---HHHHHHHHHcCCcEE
Confidence 4566664 66677999998 566664 455566655555554
No 152
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=39.74 E-value=35 Score=26.83 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+..|+++|++.|+..|-.|- |+.+-.+.+.+.|+.++
T Consensus 216 l~~ii~la~~lg~~vvAEGV----Et~~q~~~l~~lG~d~~ 252 (431)
T 2bas_A 216 LYSISLLARKIGAALLYEDI----EANFQLQYAWRNGGRYF 252 (431)
T ss_dssp HHHHHHHHHHHTCEEEEECC----CSHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeC----CCHHHHHHHHHcCCCEE
Confidence 77899999999999999999 99999999999999864
No 153
>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}
Probab=39.69 E-value=42 Score=27.22 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=39.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
...|++++++.||-.|.---=|.+.+|.+.+..+++|+-.+|=..+
T Consensus 177 ~AAl~~aa~~aG~~fvN~~P~~ia~~P~~~ela~~~gvpi~GdD~k 222 (394)
T 3cin_A 177 YAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGA 222 (394)
T ss_dssp HHHHHHHHHHTCEEEEECSSSCSTTCHHHHHHHHHTTEEEECSSBS
T ss_pred HHHHHhhhhhcCCceecCCCccccCcHHHHHHHHHcCCcEeccccc
Confidence 3456666778999999888889999999999999999999997644
No 154
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=39.51 E-value=51 Score=24.46 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=31.5
Q ss_pred CCCCChHHHHHHHHHcCCcee----cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAI----HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daI----HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+.+.++.+++.|++.|.++| |-- +..-.+|.+.+++.||.+|
T Consensus 14 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~---~~g~~~~~~~~~~~gi~vi 60 (292)
T 2yb1_A 14 DGALTPTEVIDRAAARAPALLALTDHDC---TGGLAEAAAAAARRGIPFL 60 (292)
T ss_dssp TCSSCHHHHHHHHHTTCCSEEEECCBTC---CTTHHHHHHHHHHTTCCEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEecCCc---cccHHHHHHHHHHcCCEEE
Confidence 567789999999999999976 321 1222567788888888654
No 155
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=39.43 E-value=46 Score=24.31 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHcCCc--ee-cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVD--AI-HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~d--aI-HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+|.+.|.++.++.+.. .+ +|-+|...+-.++++.|+++|+.+|
T Consensus 156 ~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li 201 (420)
T 3gbx_A 156 IDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLF 201 (420)
T ss_dssp CCHHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEE
T ss_pred cCHHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEE
Confidence 7888888877654333 34 6777777777788888999888775
No 156
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=39.23 E-value=40 Score=24.06 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh--CCCeEeCCChh
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG--AALEFIGPTTN 99 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~--~gi~FIGP~~~ 99 (103)
...-+++.+++++++.++..+.-|-|- +...+.+...+ ..+.|.|.-+.
T Consensus 172 ~~~Kg~~~li~a~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~ 222 (342)
T 2iuy_A 172 SPHKGALEAAAFAHACGRRLVLAGPAW--EPEYFDEITRRYGSTVEPIGEVGG 222 (342)
T ss_dssp CGGGTHHHHHHHHHHHTCCEEEESCCC--CHHHHHHHHHHHTTTEEECCCCCH
T ss_pred ccccCHHHHHHHHHhcCcEEEEEeCcc--cHHHHHHHHHHhCCCEEEeccCCH
Confidence 345689999999999999998888884 44445444433 78999997654
No 157
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=38.99 E-value=32 Score=26.01 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCCCCCCh----HHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 46 PPVAAYLNN----PEIICIANNINVDAI--HPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 46 ~~~~sYlni----~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+.++.+.+. ..=++.|.+.|+.+| -||-=.+-++.+.-+.|.++||..+|=++
T Consensus 221 ~~qD~~fd~P~iG~dti~~~~~ag~~~ivi~~g~si~~~~~~~i~~a~~~gi~~~~~~~ 279 (283)
T 4ggi_A 221 PIQETRVALPTIGVATIHRAARAGLAGIVGEAGRLLVVDREAVIAAADDLGLFVLGVDP 279 (283)
T ss_dssp CC---CCCCCEECHHHHHHHHHTTCCEEEEETTBCEETTHHHHHHHHHHHTCEEEEECC
T ss_pred cccccccCCccccHHHHHHHHHcCCeEEEEcCCCcEEeCHHHHHHHHHHcCCEEEEeCC
Confidence 456778888 455778888999974 79987777999999999999999887544
No 158
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=38.94 E-value=30 Score=22.93 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+|+++|++.|+-.+ ||+.+++.+-
T Consensus 29 A~~I~e~A~e~gVPi~--------e~~~LAr~Ly 54 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVI--------VDIKLARSLF 54 (98)
T ss_dssp HHHHHHHHHHHTCCEE--------ECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCee--------cCHHHHHHHH
Confidence 6899999999998654 9999999986
No 159
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=38.88 E-value=52 Score=23.16 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHcCCcee--cCCCc
Q psy6380 53 NNPEIICIANNINVDAI--HPGYG 74 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daI--HPGYG 74 (103)
...+.+++|++.|+..| |||+.
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~g~~ 108 (286)
T 3dx5_A 85 KCEQLAILANWFKTNKIRTFAGQK 108 (286)
T ss_dssp HHHHHHHHHHHHTCCEEEECSCSS
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCC
Confidence 35678999999999986 77763
No 160
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=38.87 E-value=26 Score=27.05 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=36.9
Q ss_pred HHHcC-cEEEEeeccccccc--ccce-ec----cc------CCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLEDS--SLWL-LR----DQ------GKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a--~~~~-~A----D~------~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+..+... .+.. +. +. -....+..+.-+++++++.+++.++|.|.
T Consensus 28 l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II 97 (387)
T 3bfj_A 28 CQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIV 97 (387)
T ss_dssp HHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 45668 99999999865433 1211 10 11 12234556888999999999999999876
No 161
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=38.82 E-value=64 Score=23.82 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=10.1
Q ss_pred cCcEEEEeeccc
Q psy6380 18 AGTTIIILSKRK 29 (103)
Q Consensus 18 ~g~tvai~t~~d 29 (103)
+|++|++++..|
T Consensus 92 ~g~~Vv~L~~GD 103 (285)
T 1cbf_A 92 EGKMVVRVHTGD 103 (285)
T ss_dssp TTCCEEEEESBC
T ss_pred CCCeEEEEeCCC
Confidence 688899998877
No 162
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=38.78 E-value=32 Score=27.01 Aligned_cols=38 Identities=5% Similarity=0.109 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-+..|+++|+..|...|-.|- |+++-.+.+.+.|+.++
T Consensus 349 iv~~ii~la~~lg~~viAEGV----Et~~q~~~l~~lG~d~~ 386 (413)
T 3gfz_A 349 IVASVVRCCEDLGITVVAEGV----ETLEEWCWLQSVGIRLF 386 (413)
T ss_dssp HHHHHHHHHHHHTCEEEEECC----CSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHcCCEEEEecC----CCHHHHHHHHHcCCCEE
Confidence 367899999999999999999 99999999999998764
No 163
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=38.75 E-value=26 Score=28.97 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=29.6
Q ss_pred hHHHHHHHHHcCCceecCCCccCCC-CHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSE-REDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSE-n~~Fa~~~~~~gi~FIGP~~ 98 (103)
+..+++-|.+.|+.+|.--=||-.+ -.++.+.+++.|++.|||+.
T Consensus 49 v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc 94 (480)
T 3dmy_A 49 AAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC 94 (480)
T ss_dssp HHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc
Confidence 4455666667788876654455321 13466677889999999985
No 164
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=38.74 E-value=30 Score=22.86 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+|+++|++.|+-.+ ||+.+++.+-
T Consensus 44 A~~I~~~A~e~gVPi~--------e~~~LAr~L~ 69 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIM--------RNVPLAHQLL 69 (97)
T ss_dssp HHHHHHHHHHHTCCEE--------ECHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEE--------ECHHHHHHHH
Confidence 6899999999998653 9999999986
No 165
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=38.18 E-value=48 Score=25.45 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=32.2
Q ss_pred CCCChHHHHH----HHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIIC----IANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~----~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
||.|.++.++ +.+ .||++|+--=| .|-.+-.+++.++||-+.
T Consensus 89 sy~~~~~a~~~a~rl~k-aGa~aVklEgg--~e~~~~I~al~~agipV~ 134 (264)
T 1m3u_A 89 AYATPEQAFENAATVMR-AGANMVKIEGG--EWLVETVQMLTERAVPVC 134 (264)
T ss_dssp SSSSHHHHHHHHHHHHH-TTCSEEECCCS--GGGHHHHHHHHHTTCCEE
T ss_pred CcCCHHHHHHHHHHHHH-cCCCEEEECCc--HHHHHHHHHHHHCCCCeE
Confidence 7889888885 444 89999986545 477888888889998654
No 166
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=38.01 E-value=44 Score=26.25 Aligned_cols=46 Identities=9% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCCCCCCChHHHHHHHHHcCCcee--cCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAI--HPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daI--HPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
-..+.+.+.+.+++..|+.|+..| ||--|... -.|++.++++|+.|
T Consensus 102 ~~~DP~~~~g~~Le~lk~~Gf~Gv~N~ptvglid--G~fr~~LEE~gm~~ 149 (286)
T 2p10_A 102 NGTDPFMVMSTFLRELKEIGFAGVQNFPTVGLID--GLFRQNLEETGMSY 149 (286)
T ss_dssp CTTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCC--HHHHHHHHHTTCCH
T ss_pred CCcCCCcCHHHHHHHHHHhCCceEEECCCccccc--chhhhhHhhcCCCH
Confidence 356779999999999999999987 66555544 66888888888765
No 167
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=37.93 E-value=60 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHcCCceecCC---------CccCC------CCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPG---------YGFLS------EREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPG---------YGFLS------En~~Fa~~~~~~gi~FI 94 (103)
+.+..++.|++.|.++|=.. ||+.. +-.++.+.+++.||..+
T Consensus 37 ~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~ 93 (305)
T 3obe_A 37 DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRIS 93 (305)
T ss_dssp THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEE
Confidence 57788888888888875221 33321 22467778888888764
No 168
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=37.90 E-value=37 Score=24.83 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHcCCceecCC-Cc---cCC-CCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPG-YG---FLS-EREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPG-YG---FLS-En~~Fa~~~~~~gi~FI 94 (103)
++.+..++.+++.|.++|=.. +. +.. .-.++.+.++++||...
T Consensus 29 ~~~~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~ 76 (303)
T 3l23_A 29 GDVAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKII 76 (303)
T ss_dssp SCHHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEE
Confidence 468999999999999987432 11 112 34678888999998864
No 169
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=37.67 E-value=42 Score=22.25 Aligned_cols=39 Identities=8% Similarity=0.149 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
-+.|++.|++.| +-.++-|.+|.+.+...||..+.|..+
T Consensus 100 D~~Ila~A~~~~-------~~LvT~D~~l~~~a~~~Gv~vi~~~~~ 138 (147)
T 1o4w_A 100 DPSLIEAAEKYG-------CILITNDKELKRKAKQRGIPVGYLKED 138 (147)
T ss_dssp HHHHHHHHHHHT-------CEEECCCHHHHHHHHHTTCCEECCCCC
T ss_pred hHHHHHHHHHhC-------CEEEECCHHHHHHHHHCCCeEEEecCC
Confidence 688899998865 445899999999999999999998754
No 170
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=37.66 E-value=52 Score=23.32 Aligned_cols=39 Identities=3% Similarity=-0.081 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHcCCc-eecCCCc-cCCCCHHHHHHHHhCC
Q psy6380 52 LNNPEIICIANNINVD-AIHPGYG-FLSEREDFAKAVIGAA 90 (103)
Q Consensus 52 lni~~Ii~~A~~~g~d-aIHPGYG-FLSEn~~Fa~~~~~~g 90 (103)
-+.+.+++.+.+.|++ +|..+-+ ...+|....+.+++.+
T Consensus 40 ~~~~~~l~~m~~~GV~~~v~~~~~~~~~~n~~~~~~~~~~p 80 (288)
T 2ffi_A 40 APLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVP 80 (288)
T ss_dssp BCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHST
T ss_pred CCHHHHHHHHHHhCCCeEEEECCccccccHHHHHHHHHHCC
Confidence 5688899999999998 5666644 3467888888887765
No 171
>2g0b_A FEEM; N-acyl transferase, environmental DNA, protein-product compl antibiotic synthase, transferase; HET: NLT; 3.00A {Uncultured bacterium}
Probab=37.53 E-value=24 Score=25.06 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=33.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~ 98 (103)
+...++.|++.|++.|| |+.|+.-.+.-++.|..-+|+..
T Consensus 124 ~~~a~~~a~~~g~~~i~-----levn~ra~~FY~k~GF~~~g~~~ 163 (198)
T 2g0b_A 124 FTMVLTYALETHIDYLC-----ISINPKHDTFYSLLGFTQIGALK 163 (198)
T ss_dssp HHHHHHHHHHTTCSEEE-----EEECGGGHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEE-----EEeCHHHHHHHHHCCCEEeeCCc
Confidence 55666889999999988 68999887777899999888764
No 172
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=37.12 E-value=29 Score=27.19 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=34.9
Q ss_pred HHHcC-cEEEEeeccc-ccccccc-e----eccc------CCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRK-LEDSSLW-L----LRDQ------GKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~d-l~~a~~~-~----~AD~------~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+.. +....+. + +.+. -.+..+..++-+++++++.+++.++|.|.
T Consensus 38 l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 106 (407)
T 1vlj_A 38 IKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVL 106 (407)
T ss_dssp HHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 45668 8899999833 2211110 0 0011 12224456788899999999999999876
No 173
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=36.91 E-value=75 Score=23.05 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=11.0
Q ss_pred HHcCcEEEEeeccc
Q psy6380 16 IQAGTTIIILSKRK 29 (103)
Q Consensus 16 ~~~g~tvai~t~~d 29 (103)
.++|+.|++++..|
T Consensus 74 ~~~g~~V~~l~~GD 87 (253)
T 4e16_A 74 IENNKSVVRLQTGD 87 (253)
T ss_dssp HHTTCCEEEEESBC
T ss_pred HHCCCcEEEEeCCC
Confidence 35788899998776
No 174
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=36.73 E-value=21 Score=27.85 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHcC-cEEEEeecccccccccc-e----ecccC------CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 16 IQAG-TTIIILSKRKLEDSSLW-L----LRDQG------KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 16 ~~~g-~tvai~t~~dl~~a~~~-~----~AD~~------~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
++.| +.+.|+|+.-+....+. + +.+.+ ....+..++-+++++++.+++.++|.|.
T Consensus 27 ~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~II 93 (383)
T 3ox4_A 27 NGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVI 93 (383)
T ss_dssp TTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEE
T ss_pred HHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEE
Confidence 4567 88999998755322111 0 11111 1224556788999999999999999863
No 175
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=36.40 E-value=15 Score=25.75 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=13.7
Q ss_pred HHHHcCcEEEEeeccc
Q psy6380 14 SLIQAGTTIIILSKRK 29 (103)
Q Consensus 14 ~~~~~g~tvai~t~~d 29 (103)
..|++|+|+|+||+..
T Consensus 91 vyK~dGkTlvvYT~~n 106 (120)
T 2grg_A 91 AFKKAGHFIVYFTPKN 106 (120)
T ss_dssp EEEETTEEEEEEESCC
T ss_pred EEeeCCcEEEEEccCC
Confidence 3578999999999976
No 176
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=36.33 E-value=31 Score=24.34 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=24.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCC---CCHHHHHHHHhCCCeE
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLS---EREDFAKAVIGAALEF 93 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLS---En~~Fa~~~~~~gi~F 93 (103)
.+..++.|++.|.++|=-...++. +-.++.++++++||.+
T Consensus 25 ~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~l~~~gl~i 67 (264)
T 1yx1_A 25 QASFLPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLEC 67 (264)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCEEEEEHHhcCCCHHHHHHHHHHHHcCCEE
Confidence 466777777788777633222221 3446777777777764
No 177
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=36.02 E-value=68 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.4
Q ss_pred HHcCcEEEEeeccc
Q psy6380 16 IQAGTTIIILSKRK 29 (103)
Q Consensus 16 ~~~g~tvai~t~~d 29 (103)
.++|+.|++++..|
T Consensus 89 ~~~G~~Vv~L~~GD 102 (280)
T 1s4d_A 89 ARAGNRVLRLKGGD 102 (280)
T ss_dssp HHTTCCEEEEESBC
T ss_pred HhCCCeEEEEcCCC
Confidence 35789999999877
No 178
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=35.88 E-value=83 Score=23.96 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=34.9
Q ss_pred chHHHHHcC-cEEEEeecccccc------cccceeccc-CCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCc
Q psy6380 11 NYDSLIQAG-TTIIILSKRKLED------SSLWLLRDQ-GKRMPPVAAYLNNPEIICIANNINVDA-IHPGYG 74 (103)
Q Consensus 11 ~~~~~~~~g-~tvai~t~~dl~~------a~~~~~AD~-~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYG 74 (103)
+..+|.+.| +-++|+|.+| +- +.+...|.+ +...-..+ -++-+.+++..++.++|. |-.|||
T Consensus 15 ~L~~L~~~~~~i~~Vvt~~d-~~~g~~~~~~v~~~A~~~gIpv~~~~-~~~~~~~~~~l~~~~~Dliv~~~y~ 85 (305)
T 2bln_A 15 GIEALLAAGYEISAIFTHTD-NPGEKAFYGSVARLAAERGIPVYAPD-NVNHPLWVERIAQLSPDVIFSFYYR 85 (305)
T ss_dssp HHHHHHHTTCEEEEEECCCC-------CCCCHHHHHHHHTCCEECCS-CCCSHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHCCCcEEEEEcCCC-CCCCCcCccHHHHHHHHcCCCEECCC-cCCcHHHHHHHHhcCCCEEEEeccc
Confidence 567888888 8889999987 31 122233322 21110111 123356777777778886 455776
No 179
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=35.50 E-value=51 Score=23.18 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCH---HHHHHHHhCCCeE
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSERE---DFAKAVIGAALEF 93 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~---~Fa~~~~~~gi~F 93 (103)
-...+.+++|++.||..|.-..|...... .+++.+++.|+++
T Consensus 84 ~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l 128 (264)
T 1yx1_A 84 PELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQL 128 (264)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHHHHHhcCCEE
Confidence 56889999999999998743333333332 3444456678765
No 180
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=35.36 E-value=60 Score=26.24 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=33.1
Q ss_pred CCCChHHHHHHHHHcCCcee------cCCCcc--------CCC------C--HHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANNINVDAI------HPGYGF--------LSE------R--EDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daI------HPGYGF--------LSE------n--~~Fa~~~~~~gi~FI 94 (103)
+-.|.+..++++|++|+..| |-|+-. -+- + .+|+++|++.||.|.
T Consensus 76 ~~fDp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk~G 142 (450)
T 2wvv_A 76 TKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVH 142 (450)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEE
T ss_pred ccCCHHHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCeEE
Confidence 35899999999999999875 334321 111 1 379999999999984
No 181
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=35.12 E-value=40 Score=25.17 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=30.4
Q ss_pred CCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..++.+. .+.|.+.|||.||-+- -+++..+.|.+.|+.++
T Consensus 92 TVlt~~~-a~~Ai~AGA~fIvsP~----~~~~vi~~~~~~gi~~i 131 (232)
T 4e38_A 92 TILNGEQ-ALAAKEAGATFVVSPG----FNPNTVRACQEIGIDIV 131 (232)
T ss_dssp CCCSHHH-HHHHHHHTCSEEECSS----CCHHHHHHHHHHTCEEE
T ss_pred CcCCHHH-HHHHHHcCCCEEEeCC----CCHHHHHHHHHcCCCEE
Confidence 4677555 5667779999988542 48899999999998874
No 182
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=34.95 E-value=29 Score=26.69 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=36.0
Q ss_pred HHHcC-cEEEEeecccccccccc-ee----ccc------CCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLEDSSLW-LL----RDQ------GKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~~a~~~-~~----AD~------~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+.-+....+. ++ ... -....+..++-+++++++.+++.++|.|.
T Consensus 26 l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II 93 (386)
T 1rrm_A 26 VKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLI 93 (386)
T ss_dssp HHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEE
Confidence 45567 89999998754222111 00 001 12234556888999999999999999876
No 183
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=34.72 E-value=74 Score=22.32 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=16.6
Q ss_pred CCCChHHHHHHHHHcCCcee
Q psy6380 50 AYLNNPEIICIANNINVDAI 69 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daI 69 (103)
....++.+++.|++.|.+.|
T Consensus 14 G~~~~ee~v~~A~~~Gl~~i 33 (267)
T 2yxo_A 14 AEGHPEAYLEEARAKGLKGV 33 (267)
T ss_dssp CCSCHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHcCCCEE
Confidence 44678899999999999875
No 184
>2jz7_A Selenium binding protein; NMR {Methanococcus vannielii}
Probab=34.60 E-value=26 Score=22.78 Aligned_cols=24 Identities=0% Similarity=-0.108 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCCceecCCCccCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSE 78 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSE 78 (103)
++++++-|++.|++||. |.-|=++
T Consensus 37 ~~rm~e~A~~lGAnAVV-gvr~d~~ 60 (81)
T 2jz7_A 37 VENLRKQVKAKGGMGLI-AFRITCA 60 (81)
T ss_dssp HHHHHHHHHHTTCCEEE-CCCCCCC
T ss_pred HHHHHHHHHHcCCCEEE-EEEEEcc
Confidence 67899999999999985 4334333
No 185
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=34.55 E-value=45 Score=26.18 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=29.2
Q ss_pred chHHHHHcC-cEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHc---CCcee
Q psy6380 11 NYDSLIQAG-TTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNI---NVDAI 69 (103)
Q Consensus 11 ~~~~~~~~g-~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~---g~daI 69 (103)
.+..|++.| +||+..|...+ =-|+..+.++|+++ |+..|
T Consensus 54 el~~~~~~G~~tiVd~t~~~~--------------------GRd~~~l~~is~~t~~~Gv~Iv 96 (363)
T 3ovg_A 54 EFKEFIDRGGSTIVTMDPPNV--------------------GRDVLKTLEIANAVKNLGGNVI 96 (363)
T ss_dssp HHHHHHHTTEEEEEECCCTTT--------------------TCCHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHhCCCeEEEeCCCcc--------------------CCCHHHHHHHHHhcccCCcEEE
Confidence 456688899 99988887553 12478899999997 88654
No 186
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=34.51 E-value=57 Score=22.23 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=31.8
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChhhh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m 101 (103)
-..+|..|++.++.. +.-+..+.+.+...||.++|.. +-|
T Consensus 86 D~~lIaLA~~l~~~l-------vT~D~~l~~vA~~~Gv~v~~~~-~~i 125 (165)
T 2lcq_A 86 DIEVLALAYELKGEI-------FSDDYNVQNIASLLGLRFRTLK-RGI 125 (165)
T ss_dssp HHHHHHHHHHHTCCE-------ECCCHHHHHHHHHTTCCEECCS-CCC
T ss_pred HHHHHHhHHHhCCeE-------EcCcHHHHHHHHHCCCeEEchh-hhc
Confidence 357888999988744 4567789999999999999987 444
No 187
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=34.48 E-value=60 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=33.9
Q ss_pred CCCCCChHHHHHHHHHcCCceecCC----------Cc--c-----------------CC--CCHHHHHHHHhCCCeEe
Q psy6380 48 VAAYLNNPEIICIANNINVDAIHPG----------YG--F-----------------LS--EREDFAKAVIGAALEFI 94 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daIHPG----------YG--F-----------------LS--En~~Fa~~~~~~gi~FI 94 (103)
..|.-..-+++++|++.|||+|=-| |. | |+ +...+.+.|++.||.|+
T Consensus 31 ~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 108 (349)
T 2wqp_A 31 EGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFI 108 (349)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEE
Confidence 3466667889999999999997433 22 3 22 23667888999999986
No 188
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=34.19 E-value=21 Score=27.89 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=43.0
Q ss_pred hHHHHHcC-cEEEEeecccccccc---cceecccCCCCCCCCCCCCh--HHHHHHHHHcCCceecCCCccCCCCHH--HH
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSS---LWLLRDQGKRMPPVAAYLNN--PEIICIANNINVDAIHPGYGFLSERED--FA 83 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~---~~~~AD~~~~~~~~~sYlni--~~Ii~~A~~~g~daIHPGYGFLSEn~~--Fa 83 (103)
..+.|++| +++++-...+ .. -...||+..- .+.|.|+ +.+++.+++.. +.|-|.- |+.. -.
T Consensus 33 ~~aAk~lG~~vi~vd~~~~---~p~~~~~~~ad~~~~---~d~~~d~~~~~~l~~l~~~~-~vV~pe~----~~v~~~gl 101 (361)
T 2r7k_A 33 LKGAKLEGFSTVCITMKGR---DVPYKRFKVADKFIY---VDNFSDIKNEEIQEKLRELN-SIVVPHG----SFIAYCGL 101 (361)
T ss_dssp HHHHHHTTCCEEEEECTTS---CHHHHHTTCCSEEEE---CSSGGGGGSHHHHHHHHHTT-EEECCBH----HHHHHHCH
T ss_pred HHHHHHCCCEEEEEECCCC---CCcccccccCceEEE---CCCcccccHHHHHHHHHHcC-CEEEeCc----hhhhHHHH
Confidence 36789999 7777655543 22 2344565332 1235554 67777777655 6665422 2111 11
Q ss_pred HHH-HhCCCeEeCCChhhh
Q psy6380 84 KAV-IGAALEFIGPTTNVL 101 (103)
Q Consensus 84 ~~~-~~~gi~FIGP~~~~m 101 (103)
..+ ++.|+.+.| +..++
T Consensus 102 ~~l~~~~g~~v~g-~~~a~ 119 (361)
T 2r7k_A 102 DNVENSFLVPMFG-NRRIL 119 (361)
T ss_dssp HHHHHTCCSCBBS-CGGGG
T ss_pred HHHHHHcCCCcCC-CHHHH
Confidence 233 378998888 55544
No 189
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=33.39 E-value=1.3e+02 Score=21.78 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHcCCce-ecCCCcc-CCCCHHHHHHHHhCC
Q psy6380 52 LNNPEIICIANNINVDA-IHPGYGF-LSEREDFAKAVIGAA 90 (103)
Q Consensus 52 lni~~Ii~~A~~~g~da-IHPGYGF-LSEn~~Fa~~~~~~g 90 (103)
-+.+.+++.+++.|++. |..+..+ ..+|....+.+++.+
T Consensus 53 ~~~e~~l~~~~~~GV~~~V~v~~~~~~~~n~~~~~~~~~~p 93 (294)
T 4i6k_A 53 ATVQSFISHLDEHNFTHGVLVQPSFLGTNNQAMLNAIQQYP 93 (294)
T ss_dssp BCHHHHHHHHHHTTCCEEEEECCGGGTTCCHHHHHHHHHST
T ss_pred CCHHHHHHHHHHcCCCeEEEecCcccccchHHHHHHHHHCC
Confidence 47999999999999984 6666553 457777777787764
No 190
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=33.29 E-value=55 Score=22.82 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHcCCce--ecCCCccCCCCHHHHHHHHhCCCeE
Q psy6380 52 LNNPEIICIANNINVDA--IHPGYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 52 lni~~Ii~~A~~~g~da--IHPGYGFLSEn~~Fa~~~~~~gi~F 93 (103)
-+..+.+++|++.|+.. +|||.-.+ ..+++.+++.||++
T Consensus 91 ~~~~~~i~~A~~lGa~~v~~~~~~~~~---~~l~~~a~~~gv~l 131 (262)
T 3p6l_A 91 SDWEKMFKFAKAMDLEFITCEPALSDW---DLVEKLSKQYNIKI 131 (262)
T ss_dssp THHHHHHHHHHHTTCSEEEECCCGGGH---HHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHcCCCEEEecCCHHHH---HHHHHHHHHhCCEE
Confidence 34777888888888875 45553222 34555556667764
No 191
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=32.95 E-value=97 Score=21.91 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCce-ecCCC
Q psy6380 16 IQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDA-IHPGY 73 (103)
Q Consensus 16 ~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGY 73 (103)
.++|+.|++++..| ..+ |--...+++.+++.|++. |.||-
T Consensus 75 ~~~g~~V~~l~~GD---P~i---------------~~~~~~l~~~l~~~gi~v~viPGi 115 (235)
T 1ve2_A 75 AREGRVVARLKGGD---PMV---------------FGRGGEEALALRRAGIPFEVVPGV 115 (235)
T ss_dssp HHTTCEEEEEESBC---TTS---------------STTHHHHHHHHHHHTCCEEEECCC
T ss_pred HHcCCeEEEEcCCC---CCc---------------ccCHHHHHHHHHHCCCCEEEECCH
Confidence 34688888887766 111 333456666666666554 67776
No 192
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=32.86 E-value=76 Score=24.27 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
..+..++++.+.|++.|+-+.|-. .+++.+.+.+.|+.
T Consensus 110 ~~~~~~~~~~~~g~~~V~~~~g~~--~~~~i~~~~~~g~~ 147 (369)
T 3bw2_A 110 GYDAKLAVLLDDPVPVVSFHFGVP--DREVIARLRRAGTL 147 (369)
T ss_dssp THHHHHHHHHHSCCSEEEEESSCC--CHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCC--cHHHHHHHHHCCCe
Confidence 368899999999999988776643 46777777777664
No 193
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=32.32 E-value=23 Score=27.16 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCCCCChHHHHHHHHHcCCcee--cC----CCcc-C----CCCHHHHHHHHhCCCeE
Q psy6380 48 VAAYLNNPEIICIANNINVDAI--HP----GYGF-L----SEREDFAKAVIGAALEF 93 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daI--HP----GYGF-L----SEn~~Fa~~~~~~gi~F 93 (103)
..++.+.+..++.+++.|.++| +. .++. + ..-.++.+.++++||..
T Consensus 29 t~~~~~~~e~l~~aa~~G~~~VEl~~~~~~p~~~~~~~~~~~~~~l~~~l~~~GL~i 85 (386)
T 1muw_A 29 TRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTV 85 (386)
T ss_dssp SSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBC
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEeeCCCCCcccCcccccHHHHHHHHHHHHHhCCeE
Confidence 4567889999999999999998 32 1221 1 12346778888888864
No 194
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=31.96 E-value=48 Score=29.46 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=33.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
+.+.|+.+|+.|+.+|=-|-+- |++.|-++|-+.||..+.
T Consensus 376 ~~~dl~~~k~~g~N~iR~~h~~--~~~~fydlcDelGilVw~ 415 (1032)
T 2vzs_A 376 AADKLKYVLNLGLNTVRLEGHI--EPDEFFDIADDLGVLTMP 415 (1032)
T ss_dssp HHHHHHHHHHTTCCEEEEESCC--CCHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCCEEECCCCC--CcHHHHHHHHHCCCEEEE
Confidence 4567889999999998664443 999999999999997653
No 195
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=31.93 E-value=47 Score=23.91 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHcCCceecCCCcc-------CCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGF-------LSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGF-------LSEn~~Fa~~~~~~gi~FI 94 (103)
.+.+..++.+++.|.++|=-.... -.+-.++.+.+++.||...
T Consensus 36 ~~~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 85 (296)
T 2g0w_A 36 VSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVT 85 (296)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceE
Confidence 578899999999999986433221 1233568888899998764
No 196
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=31.50 E-value=71 Score=23.11 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=29.4
Q ss_pred hHHHHHHHHHcCCceecCCCccCC----------CCHHHHHHHHhCCCeEe
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLS----------EREDFAKAVIGAALEFI 94 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLS----------En~~Fa~~~~~~gi~FI 94 (103)
.+.+++.|++.|.|+|=-...... .-.++.+.+++.||...
T Consensus 37 ~~~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~ 87 (316)
T 3qxb_A 37 DRLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIE 87 (316)
T ss_dssp HHHHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeEE
Confidence 567889999999999844333222 22467888999999864
No 197
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=31.19 E-value=66 Score=20.73 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHcCCceecCCC-----ccCCCCH----HHHHHHHhCC
Q psy6380 52 LNNPEIICIANNINVDAIHPGY-----GFLSERE----DFAKAVIGAA 90 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGY-----GFLSEn~----~Fa~~~~~~g 90 (103)
.+.+.|.+++++.+++.|--|+ |--++.. .|++.+++.+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~ 85 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARG 85 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 3578999999999999998884 5555555 8999987644
No 198
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=30.98 E-value=59 Score=23.75 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHcCCcee---cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAI---HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daI---HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+|.+.|.++..+.+..+| ||-+|....-.++++.|+++|+.+|
T Consensus 151 ~d~~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li 196 (417)
T 3n0l_A 151 IDYEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLF 196 (417)
T ss_dssp CCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEE
T ss_pred cCHHHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEE
Confidence 789999888775455554 4566777777788899999888765
No 199
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=30.98 E-value=50 Score=24.73 Aligned_cols=42 Identities=5% Similarity=-0.128 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
..|.++.++.+.+.|||.|+-++--..+-....+.+++.|+.
T Consensus 95 v~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k 136 (246)
T 3inp_A 95 VKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQ 136 (246)
T ss_dssp CSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSE
T ss_pred eCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCe
Confidence 445678889999999999888764433223566777777654
No 200
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=30.78 E-value=21 Score=25.27 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHcCC--ceecCCCc-cCCCCHHHHHHHHhC
Q psy6380 51 YLNNPEIICIANNINV--DAIHPGYG-FLSEREDFAKAVIGA 89 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~--daIHPGYG-FLSEn~~Fa~~~~~~ 89 (103)
+.+.+.-++++++.+. +.+..|.| |++.-+.+.+.+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~v~~~kv~~~~f~~~G~~~i~~l~~~ 53 (216)
T 1q6o_A 12 NQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKAL 53 (216)
T ss_dssp CSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCCEEEECHHHHHHhCHHHHHHHHHh
Confidence 5678888888887763 77899999 888999999998775
No 201
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=30.74 E-value=43 Score=23.51 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHcCCceecCCCcc--C---CCCHHHHHHHHhCCCeEeC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGF--L---SEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGF--L---SEn~~Fa~~~~~~gi~FIG 95 (103)
.+.+..++.+++.|.+.|=-.... . .+-.++.+.+++.||...+
T Consensus 17 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 65 (290)
T 2qul_A 17 VDFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMC 65 (290)
T ss_dssp CCHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEE
Confidence 368888999999999886433221 1 2334677788888887653
No 202
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=30.71 E-value=60 Score=23.39 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCCCh---HHHHHHHHHcCCceecCCCccCCC--CHHHHHHHH
Q psy6380 50 AYLNN---PEIICIANNINVDAIHPGYGFLSE--REDFAKAVI 87 (103)
Q Consensus 50 sYlni---~~Ii~~A~~~g~daIHPGYGFLSE--n~~Fa~~~~ 87 (103)
.+++. ..+.+++.+.|+|+|+--+||-+. +.+..+.+.
T Consensus 127 ~~l~~~~~~~~a~~a~eaGad~I~tstg~~~gga~~~~i~~v~ 169 (225)
T 1mzh_A 127 PYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIK 169 (225)
T ss_dssp GGCCHHHHHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHH
Confidence 34554 456667778899999988887543 334444443
No 203
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=30.56 E-value=16 Score=27.00 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=27.5
Q ss_pred eecccCCCCCCCCCCCChHHHHHHHHHcCCce--ecCCC
Q psy6380 37 LLRDQGKRMPPVAAYLNNPEIICIANNINVDA--IHPGY 73 (103)
Q Consensus 37 ~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~da--IHPGY 73 (103)
++-||..- .+...--+++++++-|++.|+++ |||||
T Consensus 5 ~~iDht~L-~p~~t~~~i~~l~~~a~~~~~~aVcv~p~~ 42 (220)
T 1ub3_A 5 AHIDHTLL-KPTATLEEVAKAAEEALEYGFYGLCIPPSY 42 (220)
T ss_dssp GGEEEECC-CTTCCHHHHHHHHHHHHHHTCSEEECCGGG
T ss_pred Hhcceecc-CCCCCHHHHHHHHHHHHHhCCCEEEECHHH
Confidence 44577553 56667788999999999999998 56776
No 204
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=30.54 E-value=52 Score=25.49 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=32.5
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
+..++++|++.|..+-. +|-+.-+|..++.+...|+.++-=++.
T Consensus 236 i~~vv~aar~aG~~vgv--cge~~~dp~~~~~l~~lG~~~~si~p~ 279 (324)
T 2xz9_A 236 VKMVIDAAHKEGKFAAM--CGEMAGDPLAAVILLGLGLDEFSMSAT 279 (324)
T ss_dssp HHHHHHHHHHTTCEEEE--CSGGGGCHHHHHHHHHHTCCEEEECGG
T ss_pred HHHHHHHHHHHCCceee--cCccCCCHHHHHHHHHCCCCEEEEChh
Confidence 45678889999876522 466777999999999999877644433
No 205
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=30.47 E-value=51 Score=24.98 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHH----HHHHhCCCeEeCCCh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFA----KAVIGAALEFIGPTT 98 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa----~~~~~~gi~FIGP~~ 98 (103)
.++..+.-+.+.|+|.|-.--|.|+. ++|. ++|++.|-++.+|+-
T Consensus 72 av~e~~~~iL~aG~dvv~~S~gaLad-~~l~~~L~~aA~~gg~~l~vpSG 120 (253)
T 1j5p_A 72 AVKEYSLQILKNPVNYIIISTSAFAD-EVFRERFFSELKNSPARVFFPSG 120 (253)
T ss_dssp HHHHHHHHHTTSSSEEEECCGGGGGS-HHHHHHHHHHHHTCSCEEECCCT
T ss_pred HHHHHHHHHHHCCCCEEEcChhhhcC-HHHHHHHHHHHHHCCCeEEecCC
Confidence 46666777788999999999998874 5454 556678888878874
No 206
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.40 E-value=90 Score=21.31 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCC-----CCHHHHHHHHhCC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLS-----EREDFAKAVIGAA 90 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLS-----En~~Fa~~~~~~g 90 (103)
...+.|++++++.++|.|- .-.+. .=+++.+.+++.|
T Consensus 56 ~p~e~lv~aa~~~~~diV~--lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 56 QTPEQVAMAAVQEDVDVIG--VSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp CCHHHHHHHHHHTTCSEEE--EEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhcCCCEEE--EEeechhhHHHHHHHHHHHHhcC
Confidence 5678888888888888763 22222 2245556666665
No 207
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=30.38 E-value=27 Score=24.75 Aligned_cols=40 Identities=8% Similarity=-0.170 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCC
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~g 90 (103)
+.+-..-++.+.+.|||.||-|-..+.+...+.+.++..|
T Consensus 83 gi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~~ 122 (252)
T 1ka9_F 83 GVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFG 122 (252)
T ss_dssp SCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHcCCCEEEEChHHHhCcHHHHHHHHHcC
Confidence 4444455666777899999999998876655666666655
No 208
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=30.09 E-value=1e+02 Score=23.66 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=35.2
Q ss_pred hHHHHHcC-cEEEEeecccccc---------cccceeccc-CCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCcc
Q psy6380 12 YDSLIQAG-TTIIILSKRKLED---------SSLWLLRDQ-GKRMPPVAAYLNNPEIICIANNINVDA-IHPGYGF 75 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~---------a~~~~~AD~-~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYGF 75 (103)
..+|.+.| +.|+|+|.+| +- +.+...|.+ +...-.++++-+ +..++..++.++|. |-.|||.
T Consensus 20 L~~L~~~~~~v~~Vvt~pd-~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~ 93 (317)
T 3rfo_A 20 LRRLIEDGYDVIGVVTQPD-RPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIRE-KDEYEKVLALEPDLIVTAAFGQ 93 (317)
T ss_dssp HHHHHHTTCEEEEEECCCC-CEETTTTEECCCHHHHHHHHTTCCEECCSCTTS-HHHHHHHHHHCCSEEEESSCCS
T ss_pred HHHHHHCCCcEEEEEeCCC-cccCCCcccCCCHHHHHHHHcCCCEEccccCCC-HHHHHHHHhcCCCEEEEcCchh
Confidence 56788888 8999999987 31 112223322 211111233333 34566667778885 5678873
No 209
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=29.80 E-value=30 Score=23.93 Aligned_cols=40 Identities=5% Similarity=-0.129 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCC
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi 91 (103)
..+.+.+ +.+.+.|||.|+-|-..+.+...+.+.+++.|.
T Consensus 86 i~~~~~~-~~~~~~Gad~V~i~~~~~~~~~~~~~~~~~~g~ 125 (253)
T 1h5y_A 86 VRSLEDA-TTLFRAGADKVSVNTAAVRNPQLVALLAREFGS 125 (253)
T ss_dssp CCSHHHH-HHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCG
T ss_pred CCCHHHH-HHHHHcCCCEEEEChHHhhCcHHHHHHHHHcCC
Confidence 4445665 666778999999988877544445566666563
No 210
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=29.79 E-value=55 Score=23.82 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHH--cCCcee-cCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANN--INVDAI-HPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~--~g~daI-HPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-.+|.+.|.++.++ +.+-.+ +|.+|....-.++++.|+++|+.+|
T Consensus 148 ~~~d~~~l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li 195 (407)
T 2dkj_A 148 ELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLV 195 (407)
T ss_dssp SSCCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEE
T ss_pred CccCHHHHHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEE
Confidence 45778888777653 333344 5777766666778888888887665
No 211
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=29.60 E-value=60 Score=23.51 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=40.1
Q ss_pred cchHHHHHc------C-cEEEEeecccccccccceeccc-CCCC--CCCCCCCC----hHHHHHHHHHcCCce-ecCCCc
Q psy6380 10 DNYDSLIQA------G-TTIIILSKRKLEDSSLWLLRDQ-GKRM--PPVAAYLN----NPEIICIANNINVDA-IHPGYG 74 (103)
Q Consensus 10 ~~~~~~~~~------g-~tvai~t~~dl~~a~~~~~AD~-~~~~--~~~~sYln----i~~Ii~~A~~~g~da-IHPGYG 74 (103)
.|..+|++. + +-++|+|+.+ +..-...|.+ +... -+.++|-+ -+.+++..++.++|. |-.|||
T Consensus 12 s~L~aLi~~~~~~~~~~~I~~Vvs~~~--~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 12 SNLQALIDSTREPNSSAQIDIVISNKA--AVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp TTHHHHHHHHHSTTCSCEEEEEEESST--TCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred hHHHHHHHHHhcCCCCcEEEEEEeCCC--ChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 466777765 5 7789999987 2223333432 2211 13344554 256888888899997 457888
Q ss_pred -cCCC
Q psy6380 75 -FLSE 78 (103)
Q Consensus 75 -FLSE 78 (103)
.|++
T Consensus 90 ~il~~ 94 (209)
T 1meo_A 90 RILSG 94 (209)
T ss_dssp SCCCH
T ss_pred hhCCH
Confidence 4443
No 212
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=29.30 E-value=92 Score=22.42 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=10.7
Q ss_pred HHHHcCcEEEEeec
Q psy6380 14 SLIQAGTTIIILSK 27 (103)
Q Consensus 14 ~~~~~g~tvai~t~ 27 (103)
.+.++|+.||++|+
T Consensus 78 ~~~~~G~~Va~ls~ 91 (242)
T 1wyz_A 78 KPLAGGASMGVISE 91 (242)
T ss_dssp HHHHTTCCEEEECC
T ss_pred HHHHcCCEEEEEec
Confidence 44557999999985
No 213
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=29.12 E-value=1.4e+02 Score=21.13 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCc
Q psy6380 16 IQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDA-IHPGYG 74 (103)
Q Consensus 16 ~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYG 74 (103)
.++|+.||+++..| ..+ |--...+++.+++.|++. |+||--
T Consensus 72 ~~~g~~V~~l~~GD---P~i---------------~~~~~~l~~~l~~~gi~v~viPGiS 113 (239)
T 1va0_A 72 ARAHPFVVRLKGGD---PMV---------------FGRGGEEVLFLLRHGVPVEVVPGVT 113 (239)
T ss_dssp HHTSSEEEEEESBC---TTS---------------SSSHHHHHHHHHHTTCCEEEECCCC
T ss_pred HHCCCcEEEEeCCC---Ccc---------------ccCHHHHHHHHHHCCCcEEEECCcc
Confidence 34688888887766 111 333455666666666554 666654
No 214
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=28.90 E-value=26 Score=25.30 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=29.8
Q ss_pred HHHHHHcCCceecCCCc----cCCCCHHHHHHHHhCCCe---EeCCChh
Q psy6380 58 ICIANNINVDAIHPGYG----FLSEREDFAKAVIGAALE---FIGPTTN 99 (103)
Q Consensus 58 i~~A~~~g~daIHPGYG----FLSEn~~Fa~~~~~~gi~---FIGP~~~ 99 (103)
++.+++.|||.|+-|-- -..|-.++.+.+.+.|+. .+||..+
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~~e 123 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINT 123 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSSHH
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCchH
Confidence 47888999999988663 124566777777788874 5677654
No 215
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=28.54 E-value=32 Score=24.53 Aligned_cols=41 Identities=7% Similarity=0.038 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHcCCceecCCCc--cCCCCHHHHHHHHhCCCeE
Q psy6380 53 NNPEIICIANNINVDAIHPGYG--FLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYG--FLSEn~~Fa~~~~~~gi~F 93 (103)
+.+..++.+++.|.|.|=-... +-.+-.++.+.+++.||.+
T Consensus 42 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~ 84 (290)
T 2zvr_A 42 DLRKGMELAKRVGYQAVEIAVRDPSIVDWNEVKILSEELNLPI 84 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCGGGSCHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCcchhhHHHHHHHHHHcCCeE
Confidence 4677788888888887533222 2233356777777887765
No 216
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=28.38 E-value=1e+02 Score=20.48 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=37.0
Q ss_pred hHHHHHcCcEEEEeecccccccccceeccc-CCC-CCCCCCCCChHHHHHHHHHcCCc---eecCCCccCCCCHHHHHHH
Q psy6380 12 YDSLIQAGTTIIILSKRKLEDSSLWLLRDQ-GKR-MPPVAAYLNNPEIICIANNINVD---AIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 12 ~~~~~~~g~tvai~t~~dl~~a~~~~~AD~-~~~-~~~~~sYlni~~Ii~~A~~~g~d---aIHPGYGFLSEn~~Fa~~~ 86 (103)
...|++.|-.++|+|-..-. .....+.+ +.. .... --..+.+..++++.|++ .+.-|=+. .+. ..+
T Consensus 48 l~~L~~~g~~~~i~T~~~~~--~~~~~~~~lgi~~~~~~--~~k~~~l~~~~~~~~~~~~~~~~vGD~~----nD~-~~~ 118 (176)
T 3mmz_A 48 IAALRKSGLTMLILSTEQNP--VVAARARKLKIPVLHGI--DRKDLALKQWCEEQGIAPERVLYVGNDV----NDL-PCF 118 (176)
T ss_dssp HHHHHHTTCEEEEEESSCCH--HHHHHHHHHTCCEEESC--SCHHHHHHHHHHHHTCCGGGEEEEECSG----GGH-HHH
T ss_pred HHHHHHCCCeEEEEECcChH--HHHHHHHHcCCeeEeCC--CChHHHHHHHHHHcCCCHHHEEEEcCCH----HHH-HHH
Confidence 35789999999999965411 00011110 000 0000 11356667777777643 45444332 123 455
Q ss_pred HhCCCeEeC
Q psy6380 87 IGAALEFIG 95 (103)
Q Consensus 87 ~~~gi~FIG 95 (103)
..+|+.++-
T Consensus 119 ~~ag~~v~~ 127 (176)
T 3mmz_A 119 ALVGWPVAV 127 (176)
T ss_dssp HHSSEEEEC
T ss_pred HHCCCeEEC
Confidence 667766643
No 217
>3qkb_A Uncharacterized protein; beta/alpha-propeller, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.73A {Pediococcus pentosaceus}
Probab=28.36 E-value=37 Score=23.36 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=14.4
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
.+++++-|++.|||||.
T Consensus 64 ~~rM~e~A~~lGANAVI 80 (111)
T 3qkb_A 64 KQKLKKKADLLEGDGII 80 (111)
T ss_dssp HHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 46788999999999974
No 218
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=28.35 E-value=10 Score=28.06 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCeEeCCCh
Q psy6380 81 DFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 81 ~Fa~~~~~~gi~FIGP~~ 98 (103)
.+.+.+.+.|.+|+||+.
T Consensus 144 ~lsk~LKkrGfkFvGpT~ 161 (183)
T 2ofk_A 144 ALAKALKKRGFKFVGTTI 161 (183)
T ss_dssp HHHHHHHHTTCCSCCHHH
T ss_pred HHHHHHHhCCCeecChHH
Confidence 488899999999999974
No 219
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=28.33 E-value=78 Score=24.05 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCC--HHHHHHHHhCCCe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSER--EDFAKAVIGAALE 92 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn--~~Fa~~~~~~gi~ 92 (103)
|..-..-+..|+..|||+|+=+--.|+.. .+|.+.+.+.|+.
T Consensus 128 fi~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 128 FLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CCCSTHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCE
T ss_pred ccCCHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCe
Confidence 43333345668899999999998888632 2555666777765
No 220
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=28.24 E-value=55 Score=24.66 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=31.3
Q ss_pred cCCcchHHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecC
Q psy6380 7 PCKDNYDSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHP 71 (103)
Q Consensus 7 ~~~~~~~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHP 71 (103)
|+.+-+.+|++.| ++|..+.+ +- +|.-+.-+...|...|.+...+.||++||-
T Consensus 39 ~~~~f~~al~~~~--~~~IaE~K-~a---------sPs~g~i~~~~~p~~~A~~y~~~GA~~isv 91 (272)
T 3qja_A 39 PPLDVMAALREPG--IGVIAEVK-RA---------SPSAGALATIADPAKLAQAYQDGGARIVSV 91 (272)
T ss_dssp CCCCHHHHHTSSS--CEEEEEEC-----------------------CHHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHhcCC--CeEEEEEe-cC---------CCCCCccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 5567778887655 67777776 32 111122344567888888888999999883
No 221
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=28.23 E-value=1.8e+02 Score=21.56 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=9.9
Q ss_pred HHcCcEEEEeeccc
Q psy6380 16 IQAGTTIIILSKRK 29 (103)
Q Consensus 16 ~~~g~tvai~t~~d 29 (103)
.++|+.|++++..|
T Consensus 99 ~~~G~~Vv~L~~GD 112 (294)
T 2ybo_A 99 ARQQRRVVRLKGGD 112 (294)
T ss_dssp HHTTCCEEEEEEBC
T ss_pred HHCCCeEEEEcCCC
Confidence 34688888887666
No 222
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=28.10 E-value=12 Score=27.84 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCeEeCCCh
Q psy6380 81 DFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 81 ~Fa~~~~~~gi~FIGP~~ 98 (103)
.+++.+.+.|..|+||..
T Consensus 144 ~lsKdLKkrGFkFvGpt~ 161 (186)
T 2jg6_A 144 QLSKDLKQYGFKFLGPVT 161 (186)
T ss_dssp HHHHHHHTTTCCSCCHHH
T ss_pred HHHHHHHHCCCeeechHH
Confidence 688899999999999964
No 223
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=28.07 E-value=51 Score=25.57 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=31.7
Q ss_pred CCCC-ChHHH----HHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYL-NNPEI----ICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYl-ni~~I----i~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-||. |.++. .++.++.||++|+=-=| .|-.+-.+++.++||-+.
T Consensus 105 gsy~~s~~~a~~na~rl~~eaGa~aVklEdg--~e~~~~I~al~~agIpV~ 153 (281)
T 1oy0_A 105 GSYEAGPTAALAAATRFLKDGGAHAVKLEGG--ERVAEQIACLTAAGIPVM 153 (281)
T ss_dssp TSSTTCHHHHHHHHHHHHHTTCCSEEEEEBS--GGGHHHHHHHHHHTCCEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCeEEEECCc--HHHHHHHHHHHHCCCCEE
Confidence 3775 77774 55667799999984334 477788888888887554
No 224
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.96 E-value=1.2e+02 Score=19.29 Aligned_cols=36 Identities=0% Similarity=-0.026 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
.+.+..++.|||+|.-|- +. +...+.+.++||..+-
T Consensus 54 ~~~~~L~~~gv~~vi~~~--iG--~~a~~~L~~~GI~v~~ 89 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYG--IG--RRAIEYFNSLGISVVT 89 (121)
T ss_dssp HHHHHHHHTTCCEEECSB--CC--HHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHcCCCEEEECC--CC--HhHHHHHHHCCCEEEE
Confidence 777777889999999873 33 4456888999998874
No 225
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=27.94 E-value=84 Score=23.07 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=7.4
Q ss_pred HHHHHHHHHcCCc
Q psy6380 55 PEIICIANNINVD 67 (103)
Q Consensus 55 ~~Ii~~A~~~g~d 67 (103)
..+++.|++.|+.
T Consensus 171 ~~l~~~~~~~gi~ 183 (278)
T 1hw6_A 171 REITDWAAAHDVK 183 (278)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCE
Confidence 4566666666553
No 226
>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, PR structure initiative, the midwest center for structural GEN MCSG; 2.09A {Bacillus cereus} SCOP: d.230.5.1 PDB: 2gtc_A
Probab=27.90 E-value=39 Score=22.33 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.6
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.||+||.
T Consensus 62 ~~rm~~~A~~lGAnAVV 78 (103)
T 1vr4_A 62 MDEMKELAKQKGANAIV 78 (103)
T ss_dssp HHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 56789999999999974
No 227
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=27.57 E-value=85 Score=23.41 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=31.0
Q ss_pred hHHHHHHHHHcCCce-ec-----CCC-ccCCCCHHHHHHHHhCCCeE-eCCCh
Q psy6380 54 NPEIICIANNINVDA-IH-----PGY-GFLSEREDFAKAVIGAALEF-IGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~da-IH-----PGY-GFLSEn~~Fa~~~~~~gi~F-IGP~~ 98 (103)
+++|+++|++.|+-. |. -++ |..--+..+.+.|.+.|+.+ ||..+
T Consensus 207 ~~~il~~~~~~g~~lEiN~~~l~~~~~~~~yp~~~~~~~~~~~g~~i~igSDA 259 (283)
T 3dcp_A 207 FRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDS 259 (283)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGGSTTCCSCBSCHHHHHHHHHTTCCEEEECCB
T ss_pred HHHHHHHHHHcCCEEEEechHhcCCCCCCcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 899999999999754 22 222 33334789999998888764 55544
No 228
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=27.57 E-value=1.5e+02 Score=20.46 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=17.3
Q ss_pred hHHHHHHHHHcCCcee--cCCCcc
Q psy6380 54 NPEIICIANNINVDAI--HPGYGF 75 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI--HPGYGF 75 (103)
..+.+++|++.|+..| |||+..
T Consensus 91 ~~~~i~~A~~lGa~~v~~~~g~~~ 114 (285)
T 1qtw_A 91 FIDEMQRCEQLGLSLLNFHPGSHL 114 (285)
T ss_dssp HHHHHHHHHHTTCCEEEECCCBCT
T ss_pred HHHHHHHHHHcCCCEEEECcCCCC
Confidence 4567899999999975 888753
No 229
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=27.46 E-value=56 Score=22.86 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+|+++|++.|+-.+ ||+.+++.+-
T Consensus 83 A~~I~e~A~e~gVPi~--------e~~~LAr~Ly 108 (137)
T 3bzs_A 83 ALQIIKLAELYDIPVI--------EDIPLARSLY 108 (137)
T ss_dssp HHHHHHHHHHHTCCEE--------ECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEE--------eCHHHHHHHH
Confidence 6899999999998654 9999999997
No 230
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=27.39 E-value=51 Score=24.00 Aligned_cols=41 Identities=2% Similarity=-0.078 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.|.+..++.+.+.|||.|+-++=-..+-..+.+.+.+.|+.
T Consensus 74 ~~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k 114 (228)
T 3ovp_A 74 SKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMK 114 (228)
T ss_dssp SCGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCC
Confidence 34456778888899999888763322223466777777753
No 231
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=27.32 E-value=67 Score=23.14 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHcCCceecCCC--ccCC---------CCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGY--GFLS---------EREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGY--GFLS---------En~~Fa~~~~~~gi~FI 94 (103)
.+.+..++.+++.|.+.|=-.. +.+. +-.++.+.++++||...
T Consensus 15 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 68 (340)
T 2zds_A 15 LPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCW 68 (340)
T ss_dssp SCHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEE
Confidence 4689999999999999874321 2221 12578889999999885
No 232
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=27.19 E-value=57 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHcCCceecCCCccCC
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLS 77 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLS 77 (103)
++..|++.+++.|+..|.-+...+.
T Consensus 101 ~l~~~i~~~~~~~~~vil~~~~p~~ 125 (240)
T 3mil_A 101 NIRQMVSLMKSYHIRPIIIGPGLVD 125 (240)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 6888999999999998877754443
No 233
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=26.98 E-value=90 Score=23.08 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCceec--C-CCccCCCCHHHHHHHHhCCC
Q psy6380 55 PEIICIANNINVDAIH--P-GYGFLSEREDFAKAVIGAAL 91 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIH--P-GYGFLSEn~~Fa~~~~~~gi 91 (103)
..+++.|++.|+..+- | |-|.|-.++.+.+.+++.|+
T Consensus 179 ~~l~~~~~~~gi~v~a~spl~~G~l~~~~~l~~ia~~~g~ 218 (283)
T 2wzm_A 179 AALREVNAGYNIVTEAYGPLGVGRLLDHPAVTAIAEAHGR 218 (283)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTGGGGCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEecCCCCCcccchHHHHHHHHHhCC
Confidence 4566666666654321 0 12223345555555555543
No 234
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=26.94 E-value=47 Score=25.77 Aligned_cols=52 Identities=10% Similarity=0.032 Sum_probs=33.5
Q ss_pred HHHcC-cEEEEeeccccc-----------ccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLE-----------DSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~-----------~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.|.|+|+.... +..+... ....+..++-+++++++.+++.++|.|.
T Consensus 31 l~~~g~~r~liVtd~~~~~~~~~v~~~L~~~~~~~f----~~v~~~p~~~~v~~~~~~~~~~~~D~II 94 (358)
T 3jzd_A 31 VERLGAKRALVLCTPNQQAEAERIADLLGPLSAGVY----AGAVMHVPIESARDATARAREAGADCAV 94 (358)
T ss_dssp HHHTTCSCEEEECCGGGHHHHHHHHHHHGGGEEEEE----CCCCTTCBHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHhCCCeEEEEeCCcHHHHHHHHHHHhccCCEEEe----cCCcCCCCHHHHHHHHHHhhccCCCEEE
Confidence 56678 888999987521 1111111 1223345677899999999999999764
No 235
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=26.87 E-value=59 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+|+++|++.|+-.+ ||+.+++.+-
T Consensus 73 A~~I~~~A~e~~VPi~--------e~~~LAr~Ly 98 (123)
T 2jli_A 73 VQTVRKIAEEEGVPIL--------QRIPLARALY 98 (123)
T ss_dssp HHHHHHHHHHHTCCEE--------ECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEE--------eCHHHHHHHH
Confidence 6899999999998654 9999999986
No 236
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=26.83 E-value=33 Score=26.63 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHcCCceecCCC
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGY 73 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGY 73 (103)
.--|.+.|+++|++.|+.-|.|+.
T Consensus 197 dl~N~~~I~~i~l~aGv~~viPHI 220 (249)
T 3m0z_A 197 DLENYSEILKIALDAGVSKIIPHI 220 (249)
T ss_dssp CTTTHHHHHHHHHHHTCSCBCCBC
T ss_pred cHhhHHHHHHHHHHcCCCeecccc
Confidence 355799999999999999999985
No 237
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=26.71 E-value=1e+02 Score=19.01 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=33.6
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
+..+++.|++.|++.|.-.. .+.|..=.+..++.|....|--.+
T Consensus 112 l~~~~~~a~~~g~~~i~l~v--~~~N~~a~~~y~k~GF~~~g~~~~ 155 (164)
T 3eo4_A 112 VSLVLKWLKNIGYKKAHARI--LENNIRSIKLFESLGFKKTKKGRE 155 (164)
T ss_dssp HHHHHHHHHHTTCCEEEEEE--ETTCHHHHHHHHHTTCEEEEECST
T ss_pred HHHHHHHHHhCCCcEEEEEe--CCCCHHHHHHHHHCCCEEEeeech
Confidence 56788888888988776543 568887778889999999885443
No 238
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=26.65 E-value=1.4e+02 Score=22.34 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCceec--CCCccCCCCHHHHHHHHhCCCe
Q psy6380 56 EIICIANNINVDAIH--PGYGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 56 ~Ii~~A~~~g~daIH--PGYGFLSEn~~Fa~~~~~~gi~ 92 (103)
.++++.++.|++..+ ..-.|-+.+.+.++.+.+.|+.
T Consensus 177 e~l~iL~~~g~~~~~~~i~H~f~~~~~e~a~~~~~~G~~ 215 (330)
T 2ob3_A 177 QQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYL 215 (330)
T ss_dssp HHHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCcCcccEEEeCCCCCCCHHHHHHHHhCCCE
Confidence 677888888876322 3334546788999999999875
No 239
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=26.54 E-value=38 Score=23.52 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHcCCceecCCCccC--CCCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFL--SEREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFL--SEn~~Fa~~~~~~gi~FI 94 (103)
.+.+..++.+++.|.+.|=.....+ .+-.++.+.++++|+...
T Consensus 18 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~ 62 (275)
T 3qc0_A 18 CGFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLT 62 (275)
T ss_dssp CCHHHHHHHHHHTTCCEEECBHHHHHHHCHHHHHHHHHHHTCEES
T ss_pred CCHHHHHHHHHHcCCCEEEeccccccccCHHHHHHHHHHcCCceE
Confidence 4677788888888888765433211 223456677777777653
No 240
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=26.49 E-value=22 Score=26.83 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+.+.+.++.. .|||+|.=|=+|+.++|.+.+.+.
T Consensus 298 I~~~~da~~~l~-~GAd~V~igr~~l~~~P~~~~~i~ 333 (336)
T 1f76_A 298 IDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKEIV 333 (336)
T ss_dssp CCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCEEEeeHHHHhcCcHHHHHHH
Confidence 334445444443 699999999999999999988764
No 241
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=26.13 E-value=51 Score=23.43 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHcCCceecCCCccC---------C--CCHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFL---------S--EREDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFL---------S--En~~Fa~~~~~~gi~FI 94 (103)
++.+..++.+++.|.+.|=-..... + +-.++.+.++++||...
T Consensus 30 ~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 83 (295)
T 3cqj_A 30 ECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVP 83 (295)
T ss_dssp SCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEE
T ss_pred CCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 6899999999999999865433221 1 12368888899999875
No 242
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=26.06 E-value=8.7 Score=28.72 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHcCCcee--cCCC
Q psy6380 49 AAYLNNPEIICIANNINVDAI--HPGY 73 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daI--HPGY 73 (103)
...-+++++++.|++.|+++| +|||
T Consensus 38 ~~~~di~~~~~~a~~~~~~av~v~~~~ 64 (263)
T 1w8s_A 38 PDSADPEYILRLARDAGFDGVVFQRGI 64 (263)
T ss_dssp GGGGCHHHHHHHHHHHTCSEEEECHHH
T ss_pred cchhhHHHHHHHHHhhCCCEEEECHHH
Confidence 368899999999999999984 5665
No 243
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086, structural genomics, center for STRU genomics of infectious diseases; HET: MSE; 1.75A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 3dr8_A*
Probab=26.01 E-value=1.1e+02 Score=18.39 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=31.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP~ 97 (103)
+..+++.|++.|+..|+-. -..+|..-.+..++.|...+|-.
T Consensus 104 l~~~~~~~~~~g~~~i~~~--~~~~n~~a~~~y~k~Gf~~~~~~ 145 (174)
T 3dr6_A 104 LSRLIDEARRCGKHVMVAG--IESQNAASIRLHHSLGFTVTAQM 145 (174)
T ss_dssp HHHHHHHHHHTTCSEEEEE--EETTCHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE--eecCCHHHHHHHHhCCCEEEEEc
Confidence 5677888888898876532 24578777778899999988753
No 244
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=25.85 E-value=45 Score=22.03 Aligned_cols=42 Identities=5% Similarity=-0.054 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHcC---------CceecCCCccCCC--------------------CHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNIN---------VDAIHPGYGFLSE--------------------REDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g---------~daIHPGYGFLSE--------------------n~~Fa~~~~~~gi~FI 94 (103)
++..|++.+++.+ +..|.-+.-.+.+ |..+.+.+.+.|+.||
T Consensus 110 ~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~i 180 (216)
T 2q0q_A 110 GMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPMPHPWFQLIFEGGEQKTTELARVYSALASFMKVPFF 180 (216)
T ss_dssp HHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCCCSHHHHHHTTTHHHHHTTHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhcccccccCCCCeEEEEeCCCcCcccCCcchhhhccHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 4788999999888 7766554433333 2234455666788776
No 245
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=25.83 E-value=45 Score=25.75 Aligned_cols=44 Identities=5% Similarity=-0.025 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
++. +.+.+.++..+..+|.|.++ |=++|--..++.++++|+.++
T Consensus 251 E~~-~~~~~~~~i~~~~~d~v~ik-GGit~a~~i~~~A~~~gi~~~ 294 (389)
T 2oz8_A 251 EYL-DLQGKRLLLEAHAADILNVH-GQVTDVMRIGWLAAELGIPIS 294 (389)
T ss_dssp TTC-CHHHHHHHHHTTCCSEEEEC-SCHHHHHHHHHHHHHHTCCEE
T ss_pred CCC-CHHHHHHHHHcCCCCEEEEC-cCHHHHHHHHHHHHHcCCeEe
Confidence 445 67777777777778888888 888888888888888887643
No 246
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=25.72 E-value=52 Score=25.09 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCcee----c----CCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 56 EIICIANNINVDAI----H----PGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 56 ~Ii~~A~~~g~daI----H----PGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
..+++.++.|+++| | +|+--+++.-+.++++.++||..+
T Consensus 31 ~~~~ilk~~G~n~vRlri~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ 77 (334)
T 1fob_A 31 ALETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGMSLY 77 (334)
T ss_dssp CHHHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHcCCCEEEEEEEECCCCCccCHHHHHHHHHHHHHCCCEEE
Confidence 46788888888873 3 455556666667777888887653
No 247
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=25.53 E-value=73 Score=20.15 Aligned_cols=45 Identities=7% Similarity=0.022 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcCCceecCCCccCCC--CHHHHHHHHhCCCeE-eCCCh
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSE--REDFAKAVIGAALEF-IGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSE--n~~Fa~~~~~~gi~F-IGP~~ 98 (103)
.+.+.+++++.++|.|.-..+..+. -.++.+.|.+.|+.+ +=|+.
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCH
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCH
Confidence 6778888999999988766654332 256778889999886 44543
No 248
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=25.45 E-value=63 Score=22.75 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
..+|+++|++.|+-.+ ||+.+++.+-
T Consensus 82 A~~I~e~A~e~gVPi~--------e~~~LAr~Ly 107 (144)
T 2jlj_A 82 VQTVRKIAEEEGVPIL--------QRIPLARALY 107 (144)
T ss_dssp HHHHHHHHHHHTCCEE--------ECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEE--------eCHHHHHHHH
Confidence 6899999999998654 9999999987
No 249
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=25.34 E-value=45 Score=25.57 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCCCChHHHHHHHHHcCCcee--cC----CCcc-C----CCCHHHHHHHHhCCCeE
Q psy6380 48 VAAYLNNPEIICIANNINVDAI--HP----GYGF-L----SEREDFAKAVIGAALEF 93 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daI--HP----GYGF-L----SEn~~Fa~~~~~~gi~F 93 (103)
..+|++.+..++.+++.|.+.| +. .++. + ..-.++.+.++++||..
T Consensus 29 t~~~~~l~e~l~~aa~~G~d~VEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GL~i 85 (394)
T 1xla_A 29 TRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKV 85 (394)
T ss_dssp SSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHCCBC
T ss_pred cCCccCHHHHHHHHHHcCCCEEEecCCccCcccCCchhhHHHHHHHHHHHHHcCCeE
Confidence 3577889999999999999998 22 1111 1 12346778888888764
No 250
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=25.18 E-value=38 Score=26.69 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHcCCceecCCC
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGY 73 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGY 73 (103)
.--|.+.|+++|++.|+.-|.|..
T Consensus 220 dl~Nf~~I~~i~l~aGv~~viPHI 243 (275)
T 3m6y_A 220 DKENFETIVRIALEANVEQVIPHV 243 (275)
T ss_dssp CTTTHHHHHHHHHHTTCSCBCCEE
T ss_pred cHhHHHHHHHHHHHcCCCeecccc
Confidence 355799999999999999999974
No 251
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=24.95 E-value=54 Score=24.05 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCC-HHHHHHHHhCCCe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSER-EDFAKAVIGAALE 92 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn-~~Fa~~~~~~gi~ 92 (103)
|.++.++.+.+.|||.|...+--++.+ ..+.+.+++.|+.
T Consensus 68 dp~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k 108 (231)
T 3ctl_A 68 RPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMK 108 (231)
T ss_dssp CGGGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCe
Confidence 456677889999999987665431333 3466777777765
No 252
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.84 E-value=31 Score=26.89 Aligned_cols=17 Identities=35% Similarity=0.303 Sum_probs=11.1
Q ss_pred hHHHHHcCcEEEEeecc
Q psy6380 12 YDSLIQAGTTIIILSKR 28 (103)
Q Consensus 12 ~~~~~~~g~tvai~t~~ 28 (103)
.+-||+.|=|.+-+++.
T Consensus 38 LdYLk~LGvt~I~L~Pi 54 (549)
T 4aie_A 38 LDYLEKLGIDAIWLSPV 54 (549)
T ss_dssp HHHHHHHTCSEEEECCC
T ss_pred hHHHHHCCCCEEEeCCC
Confidence 45688999555555663
No 253
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=24.64 E-value=48 Score=23.97 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=30.2
Q ss_pred hHHHHHHHHHcCCceecCCCcc------CCCCHH----HHHHHHhCCCeE
Q psy6380 54 NPEIICIANNINVDAIHPGYGF------LSERED----FAKAVIGAALEF 93 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGF------LSEn~~----Fa~~~~~~gi~F 93 (103)
++.|+++|++.|+-+-..|=|| |..+.+ +.++++++||.-
T Consensus 274 ld~l~~~a~~~g~~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~~Gi~~ 323 (335)
T 3gon_A 274 LRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIEL 323 (335)
T ss_dssp HHHHHHTTTTSSEEEEECTTCSSSEEEEEECSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCcEEEEccccchheEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 7899999999998777777775 666654 445567889864
No 254
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=24.57 E-value=38 Score=26.67 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=34.8
Q ss_pred HHHHcCcEEEEeecccccccccc-e----ecccC-----CCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 14 SLIQAGTTIIILSKRKLEDSSLW-L----LRDQG-----KRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 14 ~~~~~g~tvai~t~~dl~~a~~~-~----~AD~~-----~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
-|++.|+.+.|+|++.+... +. + +.+ + ....+..+.-+++++++.+++.++|.|.
T Consensus 47 ~l~~~g~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II 111 (387)
T 3uhj_A 47 YLAPLGKRALVLIDRVLFDA-LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILV 111 (387)
T ss_dssp HHGGGCSEEEEEECTTTHHH-HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHcCCEEEEEECchHHHH-HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEE
Confidence 35667888999999875322 11 1 111 1 0112344667899999999999999864
No 255
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=24.52 E-value=17 Score=24.93 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=7.5
Q ss_pred eecC-CCccCC
Q psy6380 68 AIHP-GYGFLS 77 (103)
Q Consensus 68 aIHP-GYGFLS 77 (103)
-||| |||||-
T Consensus 56 ei~~dG~GFlr 66 (130)
T 1a62_A 56 EILQDGFGFLR 66 (130)
T ss_dssp EECTTSCEEEE
T ss_pred EEcCCCeEEEe
Confidence 3676 999975
No 256
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=24.39 E-value=1.4e+02 Score=22.65 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.5
Q ss_pred HHcCcEEEEeec-cc
Q psy6380 16 IQAGTTIIILSK-RK 29 (103)
Q Consensus 16 ~~~g~tvai~t~-~d 29 (103)
.++|++||++|+ .|
T Consensus 85 l~~G~~Va~lsdaGd 99 (296)
T 3kwp_A 85 LKQGMQIAQVSDAGM 99 (296)
T ss_dssp HHTTCEEEEECSSBC
T ss_pred HhcCceEEEeccCCC
Confidence 457899999984 44
No 257
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=24.33 E-value=44 Score=24.70 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALE 92 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~ 92 (103)
-...+|+++.++.|+.+-+---| .+..+++..+++.++|..
T Consensus 62 ~~~~rll~ll~~~~v~aTfFv~g~~~~~~p~~v~~~~~~GhE 103 (300)
T 3rxz_A 62 VGVPRLLGILDEFNVPGTFFVPGYTAHRHPEPIRSIARAGHE 103 (300)
T ss_dssp THHHHHHHHHHHTTCCEEEEECHHHHHHSHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEHHHHhhCHHHHHHHHHcCCE
Confidence 45889999999999988766666 456889999999999854
No 258
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=24.23 E-value=1.7e+02 Score=20.07 Aligned_cols=38 Identities=3% Similarity=0.017 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
..+++-.+.+|++.|....|. +..-.+.+.++||.-+.
T Consensus 62 ~~~v~kI~~~g~nVVl~~k~I---~d~a~~~l~k~gI~~v~ 99 (159)
T 1ass_A 62 KQMVEKIKKSGANVVLCQKGI---DDVAQHYLAKEGIYAVR 99 (159)
T ss_dssp HHHHHHHHHTTCSEEEESSCB---CHHHHHHHHHTTCEEEC
T ss_pred HHHhhhhhhCCCeEEEECCcc---CHHHHHHHHHCCCEEEc
Confidence 456666778999999999998 44444667899988765
No 259
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=24.10 E-value=17 Score=25.60 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=31.1
Q ss_pred CCCChHHHHHHHHHcCCceec--CCCc-cCCCCHHHHHHHHhC
Q psy6380 50 AYLNNPEIICIANNINVDAIH--PGYG-FLSEREDFAKAVIGA 89 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIH--PGYG-FLSEn~~Fa~~~~~~ 89 (103)
.+.+.+.-++++++.|.+.+| +|.| |++.-+++.+.+++.
T Consensus 7 D~~~l~~~~~~~~~~~~~~~~~kv~~~~f~~~G~~~i~~lr~~ 49 (208)
T 2czd_A 7 DVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEE 49 (208)
T ss_dssp CCCSHHHHHHHHHHHGGGCSEEEEEHHHHHHHCTTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcccccEEEecHHHHHhhCHHHHHHHHHc
Confidence 367788888999888877655 7877 778888888888765
No 260
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=24.07 E-value=60 Score=23.24 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCe-----EeCCC
Q psy6380 52 LNNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALE-----FIGPT 97 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~-----FIGP~ 97 (103)
.+...+++..++.++|+|.- +.+. .-..|.+.+.+.|+. |+|.+
T Consensus 181 ~d~~~~~~~l~~~~~d~v~~~~~~~--~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 181 PDFAPFLQRMKDAKPDAMFVFVPAG--QGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp CCCHHHHHHHHHHCCSEEEEECCTT--CHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred CcHHHHHHHHHhcCCCEEEEeccch--HHHHHHHHHHHcCCCcCCceEEecC
Confidence 45677888888899999986 5554 556788888888865 88875
No 261
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=23.96 E-value=32 Score=26.89 Aligned_cols=56 Identities=5% Similarity=0.083 Sum_probs=35.4
Q ss_pred HHHHcC-cEEEEeecccccccccceecc----c--CCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 14 SLIQAG-TTIIILSKRKLEDSSLWLLRD----Q--GKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 14 ~~~~~g-~tvai~t~~dl~~a~~~~~AD----~--~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
-|++.| +.+.|+|+..... .+-++.+ . .....+..++-+++++++.+++.++|.|.
T Consensus 31 ~l~~~g~~rvliVtd~~~~~-~~~~v~~~L~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 93 (364)
T 3iv7_A 31 EVERRGSAKVMVIAGEREMS-IAHKVASEIEVAIWHDEVVMHVPIEVAERARAVATDNEIDLLV 93 (364)
T ss_dssp HHHHHTCSSEEEECCGGGHH-HHHHHTTTSCCSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHcCCCEEEEEECCCHHH-HHHHHHHHcCCCEEEcceecCCCHHHHHHHHHHHHhcCCCEEE
Confidence 356778 8899999876311 0101111 0 11223456788899999999999999863
No 262
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=23.88 E-value=73 Score=25.54 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHcCCceecC--CCccCCCCHHHHHHHHhC
Q psy6380 53 NNPEIICIANNINVDAIHP--GYGFLSEREDFAKAVIGA 89 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHP--GYGFLSEn~~Fa~~~~~~ 89 (103)
+....++.+.+.|+|+|+- +.|......++.+++.+.
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~ 293 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQK 293 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHh
Confidence 3556677788899999875 444332222344444443
No 263
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=23.77 E-value=70 Score=24.02 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHh
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIG 88 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~ 88 (103)
....+.+.+.++....|||+|.-|=+|++ ||++.+.+.+
T Consensus 190 GgI~s~~da~~~l~~~gad~V~iGR~~l~-~P~l~~~~~~ 228 (318)
T 1vhn_A 190 GDIFTPEDAKRALEESGCDGLLVARGAIG-RPWIFKQIKD 228 (318)
T ss_dssp SSCCSHHHHHHHHHHHCCSEEEESGGGTT-CTTHHHHHHH
T ss_pred CCcCCHHHHHHHHHcCCCCEEEECHHHHh-CcchHHHHHH
Confidence 34667788888877789999999999995 6666666543
No 264
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=23.48 E-value=1.2e+02 Score=22.67 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=7.8
Q ss_pred HHHHHHHHHcCCc
Q psy6380 55 PEIICIANNINVD 67 (103)
Q Consensus 55 ~~Ii~~A~~~g~d 67 (103)
..+++.|++.|+.
T Consensus 184 ~~l~~~~~~~gI~ 196 (298)
T 1vp5_A 184 QEEIEFMRNYNIQ 196 (298)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCCE
Confidence 4566666666654
No 265
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=23.44 E-value=45 Score=25.70 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=21.1
Q ss_pred CCCCCCCChHHHHHHHHHcCCceec
Q psy6380 46 PPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 46 ~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
.+..++-+++++++.+++.++|.|.
T Consensus 79 ~~~p~~~~v~~~~~~~~~~~~d~II 103 (371)
T 1o2d_A 79 EENPSFDNVMKAVERYRNDSFDFVV 103 (371)
T ss_dssp CSSCBHHHHHHHHHHHTTSCCSEEE
T ss_pred cCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3456788899999999999999876
No 266
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=23.43 E-value=1.9e+02 Score=20.03 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHcCCceecCCCccCC-----CCH------------HHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAIHPGYGFLS-----ERE------------DFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daIHPGYGFLS-----En~------------~Fa~~~~~~gi~FI 94 (103)
..|.+.+-++.+..++|+|.---|... +++ .+.++|.+.|+.||
T Consensus 42 ~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v 102 (287)
T 3sc6_A 42 ITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLV 102 (287)
T ss_dssp TTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 556778888887778998653333322 232 36677777777766
No 267
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=23.38 E-value=87 Score=23.14 Aligned_cols=46 Identities=7% Similarity=-0.037 Sum_probs=33.0
Q ss_pred CCCCCChHHHHHHHHHcCCcee--cCC-CccCCCCHHHHHHHHhCCCeE
Q psy6380 48 VAAYLNNPEIICIANNINVDAI--HPG-YGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 48 ~~sYlni~~Ii~~A~~~g~daI--HPG-YGFLSEn~~Fa~~~~~~gi~F 93 (103)
...+.....+|..+.+.|...| ||+ |++...+++..+.+.+.|+.+
T Consensus 112 ~~~~~~~~~~l~~i~~~g~v~ILAHPeRy~~~~~~~~~l~~l~~~G~~i 160 (262)
T 3qy7_A 112 DHVPRYAEQLFYDLQLKGYIPVIAHPERNREIRENPSLLYHLVEKGAAS 160 (262)
T ss_dssp TCCCTTHHHHHHHHHHTTCEEEEECGGGCHHHHHCTHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEECCCccccccccHHHHHHHHHCCCEE
Confidence 4456778888888888886654 776 556666777777778888643
No 268
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=23.38 E-value=91 Score=21.77 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=16.6
Q ss_pred hHHHHHHHHHcCCcee--cCCCc
Q psy6380 54 NPEIICIANNINVDAI--HPGYG 74 (103)
Q Consensus 54 i~~Ii~~A~~~g~daI--HPGYG 74 (103)
..+.+++|.+.|+..| |||+.
T Consensus 90 ~~~~i~~a~~lGa~~vv~h~g~~ 112 (270)
T 3aam_A 90 LADDLEKAALLGVEYVVVHPGSG 112 (270)
T ss_dssp HHHHHHHHHHHTCCEEEECCCBS
T ss_pred HHHHHHHHHHcCCCEEEECCCCC
Confidence 4677888999999864 88885
No 269
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=23.36 E-value=1.4e+02 Score=24.47 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCCChHHHHHHHHHcCCcee------cCCCcc----CCC-----CH----------HHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANNINVDAI------HPGYGF----LSE-----RE----------DFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daI------HPGYGF----LSE-----n~----------~Fa~~~~~~gi~FI 94 (103)
.-.|.+..++++|++|+..| |-|+-. .+. .| +|+++|++.||.|.
T Consensus 60 ~~fd~~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g 129 (478)
T 3ues_A 60 RNVDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFG 129 (478)
T ss_dssp SSCCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEE
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEE
Confidence 46899999999999999976 333321 122 12 78999999999984
No 270
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes str}
Probab=23.32 E-value=1.3e+02 Score=18.54 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
++.+++.|++.|+..|.-.- ..+|..-.+..++.|...+|-
T Consensus 125 l~~~~~~a~~~g~~~i~l~~--~~~N~~a~~~y~k~GF~~~~~ 165 (179)
T 2oh1_A 125 IYFAEKLGIEMSVPFIRLDC--IESNETLNQMYVRYGFQFSGK 165 (179)
T ss_dssp HHHHHHHHHHTTCCEEEEEE--ETTCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEe--cCCcHHHHHHHHHCCCEEecc
Confidence 45667777778888765332 467887777789999998874
No 271
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=23.01 E-value=42 Score=23.25 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.4
Q ss_pred HHHHHHHcCCceecCCCccCC
Q psy6380 57 IICIANNINVDAIHPGYGFLS 77 (103)
Q Consensus 57 Ii~~A~~~g~daIHPGYGFLS 77 (103)
=+++|++.|+.+|+-++|+-.
T Consensus 178 di~aA~~aG~~~I~V~~g~~~ 198 (243)
T 4g9b_A 178 GIDAINASGMRSVGIGAGLTG 198 (243)
T ss_dssp HHHHHHHHTCEEEEESTTCCS
T ss_pred HHHHHHHcCCEEEEECCCCCc
Confidence 367899999999999999754
No 272
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=23.01 E-value=44 Score=25.48 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHcCCceecCC--------Ccc----CCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAIHPG--------YGF----LSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daIHPG--------YGF----LSEn~~Fa~~~~~~gi~FI 94 (103)
.+.-..-.+++.+++.|+|++=.+ |+| ..+-..+.+.|++.||.|+
T Consensus 49 ~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~ 106 (276)
T 1vs1_A 49 ESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVV 106 (276)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEE
Confidence 343344455666679999997322 222 2334456677788888775
No 273
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=22.92 E-value=29 Score=25.71 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHcCCce--ecCCCc--cCCC
Q psy6380 49 AAYLNNPEIICIANNINVDA--IHPGYG--FLSE 78 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~da--IHPGYG--FLSE 78 (103)
.+|.|+|.|+.-..+..|.. -.||.| ||..
T Consensus 20 ~~YydiDdILa~~ekVpC~f~~~~~~lG~~~Ld~ 53 (219)
T 2e9x_C 20 ENFLSLDDILMSHEKLPVRTETAMPRLGAFFLER 53 (219)
T ss_dssp CCTTCHHHHHHTTSEEEEEESSCBTTCGGGC---
T ss_pred cCcCCHHHHHhcCCeeeeEEeecCCCCcHhhcCC
Confidence 68999999999888888776 458999 8877
No 274
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=22.81 E-value=50 Score=24.90 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHcCCceecCCCc-cCCCCHHHHHHHHhCCCeEeC
Q psy6380 53 NNPEIICIANNINVDAIHPGYG-FLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYG-FLSEn~~Fa~~~~~~gi~FIG 95 (103)
...+|+++.++.|+.+-+---| .+..+++..+++.++|. -||
T Consensus 75 ~~~rlL~lL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~Gh-EIg 117 (326)
T 3qbu_A 75 GIPRLLKLFKKYHLPATWFVPGHSIETFPEQMKMIVDAGH-EVG 117 (326)
T ss_dssp HHHHHHHHHHHTTCCCEEECCHHHHHHCHHHHHHHHTTTC-EEE
T ss_pred hHHHHHHHHHHcCCCEEEEEEhHHhhhCHHHHHHHHHcCC-EEE
Confidence 4789999999999998776666 45678999999999997 444
No 275
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=22.74 E-value=98 Score=24.89 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=39.1
Q ss_pred HHHHcC-cEEEEeecccc-c------------ccccceecccCCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCccCCC
Q psy6380 14 SLIQAG-TTIIILSKRKL-E------------DSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDA-IHPGYGFLSE 78 (103)
Q Consensus 14 ~~~~~g-~tvai~t~~dl-~------------~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYGFLSE 78 (103)
.+++.| +.||+.-++.| . +...+.+||-..+ =-++|. -+|+..|||+ ||-|---|+.
T Consensus 49 ~I~~~~~krVaLQfPdgLl~~a~~Ia~~L~~~~~e~~IlgDttYG------ACCVDe--~aA~~v~aD~lVHyGHsCL~~ 120 (378)
T 3lzd_A 49 ELKRIGAKRVLIQSPEGLRREAEELAGFLEENNIEVFLHGEINYG------ACDPAD--REAKLVGCDALIHLGHSYMKL 120 (378)
T ss_dssp HHHHTTCCEEEEECCGGGHHHHHHHHHHHHTTTCEEEEECSCCCC------TTSCCH--HHHHHTTCSEEEEEECCCCSC
T ss_pred HHHhcCCCEEEEECCHHHHHHHHHHHHHHhhcCceEEEEcCCccc------CcccCH--HHHhhcCCCEEEEcCCCcCCc
Confidence 567778 99999999976 2 3456677776544 134665 3578999997 6766555653
No 276
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila melanogaster}
Probab=22.71 E-value=22 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=12.5
Q ss_pred HhCCCeEeCCChhhhc
Q psy6380 87 IGAALEFIGPTTNVLK 102 (103)
Q Consensus 87 ~~~gi~FIGP~~~~m~ 102 (103)
..-||.||||++.+++
T Consensus 99 ~siGI~~iGPt~~q~~ 114 (150)
T 2xz8_A 99 DELVVAFIGPSSSNKK 114 (150)
T ss_dssp TEEEEEESSCCHHHHH
T ss_pred CeEEEEEECCCHHHHH
Confidence 3569999998887664
No 277
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=22.58 E-value=1e+02 Score=23.76 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=30.7
Q ss_pred CCC-CChHHHHH----HHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAY-LNNPEIIC----IANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sY-lni~~Ii~----~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-|| .|.++.++ +.+ .||++|+=-=| .|-.+-.+++.++||-+.
T Consensus 88 gsy~~s~~~a~~na~rl~k-aGa~aVklEdg--~e~~~~I~al~~agIpV~ 135 (275)
T 1o66_A 88 GAYQQSKEQAFAAAAELMA-AGAHMVKLEGG--VWMAETTEFLQMRGIPVC 135 (275)
T ss_dssp TSSSSCHHHHHHHHHHHHH-TTCSEEEEECS--GGGHHHHHHHHHTTCCEE
T ss_pred CCccCCHHHHHHHHHHHHH-cCCcEEEECCc--HHHHHHHHHHHHcCCCeE
Confidence 377 57887775 444 89999984334 477788888889998553
No 278
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=22.53 E-value=1.3e+02 Score=24.40 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred cchHHHHHcC-cEEEEeecccccc-----cccceeccc-CCCCCCCCCCCChHHHHHHHHHcCCce-ecCCCc-cCC
Q psy6380 10 DNYDSLIQAG-TTIIILSKRKLED-----SSLWLLRDQ-GKRMPPVAAYLNNPEIICIANNINVDA-IHPGYG-FLS 77 (103)
Q Consensus 10 ~~~~~~~~~g-~tvai~t~~dl~~-----a~~~~~AD~-~~~~~~~~sYlni~~Ii~~A~~~g~da-IHPGYG-FLS 77 (103)
.|..+|++.| +-++|+|..|-.. +.....|.+ +...-..+ -++-+.+++..++.++|. |-.||| .|+
T Consensus 14 ~~l~~l~~~~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~-~~~~~~~~~~l~~~~~d~iv~~~~~~il~ 89 (660)
T 1z7e_A 14 LGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD-NVNHPLWVERIAQLSPDVIFSFYYRHLIY 89 (660)
T ss_dssp HHHHHHHHTTCEEEEEECCCC--------CCHHHHHHHHTCCEECCS-CTTSHHHHHHHHHHCCSEEEEESCCSCCC
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccC-CCCcHHHHHHHHhcCCCEEEEcCcccccC
Confidence 3678899988 8889999987111 123333322 21110111 123346777777888886 556887 444
No 279
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Probab=22.46 E-value=1.1e+02 Score=25.53 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHcCCceecC-CCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHP-GYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHP-GYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
.+.+-++.+|+.|+.+|=- +| -+++.|-++|.+.||..+
T Consensus 305 ~~~~dl~~~k~~G~N~vR~~h~---p~~~~~~~~cD~~Gl~V~ 344 (667)
T 3cmg_A 305 HHEEDVALMREMGVNAIRLAHY---PQATYMYDLMDKHGIVTW 344 (667)
T ss_dssp HHHHHHHHHHHTTCCEEEETTS---CCCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHCCCCEEEecCC---CCCHHHHHHHHHCCCEEE
Confidence 3556788999999999732 22 378999999999998875
No 280
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=22.28 E-value=1.4e+02 Score=21.38 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHH
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~ 86 (103)
+.+.|.+++++.+.|.|.-+ | .|++++.+.+
T Consensus 63 ~~~~i~~~~~~~~ld~vQLH-G--~e~~~~~~~l 93 (203)
T 1v5x_A 63 PPEEVLRLMEEARLQVAQLH-G--EEPPEWAEAV 93 (203)
T ss_dssp CHHHHHHHHHHTTCSEEEEC-S--CCCHHHHHHH
T ss_pred CHHHHHHHHHhhCCCEEEEC-C--CCCHHHHHHh
Confidence 38899999999999998754 3 5889888887
No 281
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=22.22 E-value=48 Score=25.10 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCC-----HHHHHHHHhCCCeE
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSER-----EDFAKAVIGAALEF 93 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn-----~~Fa~~~~~~gi~F 93 (103)
.+.+......+...--.|-||||..--. .++++.+++.|+..
T Consensus 33 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V 79 (207)
T 1djl_A 33 INLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKV 79 (207)
T ss_dssp CCHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEE
T ss_pred cCHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeE
Confidence 4567777777776666899999963222 56888888888753
No 282
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=22.17 E-value=58 Score=25.17 Aligned_cols=52 Identities=8% Similarity=0.021 Sum_probs=33.5
Q ss_pred HHHcC-cEEEEeeccccc-----------ccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceec
Q psy6380 15 LIQAG-TTIIILSKRKLE-----------DSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIH 70 (103)
Q Consensus 15 ~~~~g-~tvai~t~~dl~-----------~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIH 70 (103)
|++.| +.+.|+|+.... +..+.. .....+..++-+++++++.+++.++|.|.
T Consensus 29 l~~~g~~r~liVtd~~~~~~~~~v~~~L~~~~~~v----~~~v~~~p~~~~v~~~~~~~~~~~~D~II 92 (353)
T 3hl0_A 29 IRRLGLSRALVLSTPQQKGDAEALASRLGRLAAGV----FSEAAMHTPVEVTKTAVEAYRAAGADCVV 92 (353)
T ss_dssp HHHTTCCCEEEECCGGGHHHHHHHHHHHGGGEEEE----ECCCCTTCBHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHhCCCEEEEEecCchhhHHHHHHHHHhhCCcEE----ecCcCCCCcHHHHHHHHHHHhccCCCEEE
Confidence 46678 888899987421 111111 11223445677899999999999999863
No 283
>2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative acetyltransferase of the GNAT family; 1.85A {Desulfovibrio desulfuricans subsp}
Probab=22.10 E-value=1.2e+02 Score=18.57 Aligned_cols=43 Identities=5% Similarity=-0.130 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
++.+++.|++.|+..|.-...-..+|..-.+..++.|...+|-
T Consensus 116 l~~~~~~~~~~g~~~i~l~~~~~~~N~~a~~~y~k~Gf~~~~~ 158 (177)
T 2r7h_A 116 LAEVVHDVRLTGGRLLFAETSGIRKYAPTRRFYERAGFSAEAV 158 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSGGGHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEeccccccHHHHHHHHHcCCEeccc
Confidence 5677788888888776533222356776667778999987763
No 284
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=22.08 E-value=1.5e+02 Score=21.31 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHH
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVI 87 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~ 87 (103)
+.+.|.+++.+.+.|.|+-+ | .|++++.+.+.
T Consensus 64 ~~~~i~~~~~~~~ld~vQLH-G--~e~~~~~~~l~ 95 (205)
T 1nsj_A 64 EPEKILDVASYVQLNAVQLH-G--EEPIELCRKIA 95 (205)
T ss_dssp CHHHHHHHHHHHTCSEEEEC-S--CCCHHHHHHHH
T ss_pred CHHHHHHHHHhhCCCEEEEC-C--CCCHHHHHHHh
Confidence 37899999999999998754 3 58888887774
No 285
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=22.04 E-value=1.4e+02 Score=21.64 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=27.0
Q ss_pred CCCChHHHHHHHHHcCCceec---CCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANNINVDAIH---PGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIH---PGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-.+|.+.+.++..+.+..+|. +-+|...+=.++++.|.++|+.+|
T Consensus 148 ~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li 195 (405)
T 2vi8_A 148 HVIDYDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLM 195 (405)
T ss_dssp CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEE
T ss_pred CCcCHHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEE
Confidence 356788877766543333332 235544455677778888777665
No 286
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=21.92 E-value=82 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHH-HHHHHHhCCCeEeCCCh
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSERED-FAKAVIGAALEFIGPTT 98 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~-Fa~~~~~~gi~FIGP~~ 98 (103)
+.+.|-++....+.+++-.-|-.+.-+++ +.+.|+++||.++.-+|
T Consensus 172 ~~~~l~~~~~~~~~~~~Q~~~nl~~~~~e~l~~~~~~~gI~v~a~sp 218 (317)
T 1ynp_A 172 RPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGP 218 (317)
T ss_dssp CHHHHHHHHHHSCCCEEEEECBTTBCGGGGGHHHHHHTTCEEEEECT
T ss_pred CHHHHHHHHhcCCCEEEeccCCchhCCHHHHHHHHHHcCCeEEEecC
Confidence 36677777776777776666665544332 77888888888875443
No 287
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=21.92 E-value=1.4e+02 Score=17.86 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=30.0
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
++.+++.|++.|++.|+-.. .+.|..-.+..++.|...+|
T Consensus 110 l~~~~~~~~~~g~~~i~l~~--~~~n~~a~~~y~k~GF~~~~ 149 (164)
T 4e0a_A 110 FEAIISYGKAHQVDAIELDV--YDFNDRAKAFYHSLGMRCQK 149 (164)
T ss_dssp HHHHHHHHHHTTCSEEEEEE--ETTCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEE--EcCCHHHHHHHHHcCCEEec
Confidence 56777888888888776432 45787777778999988776
No 288
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=21.90 E-value=97 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 53 NNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 53 ni~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-+..|+..|+..|...|-.|- |+.+-.+.+.+.|+.++
T Consensus 379 ~~~~~i~~~~~~~~~viaegV----Et~~~~~~l~~~G~~~~ 416 (437)
T 3hvb_A 379 ILKGLIAELHEQQKLSIVPFV----ESASVLATLWQAGATYI 416 (437)
T ss_dssp HHHHHHHHHHHTTCEEEECCC----CSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHcCCCEEeeee----CCHHHHHHHHHcCCCEe
Confidence 477899999999999999986 99999999999998764
No 289
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=21.73 E-value=1.3e+02 Score=22.13 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=30.7
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHH---HHHhCCC--eEeCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAK---AVIGAAL--EFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~---~~~~~gi--~FIGP 96 (103)
+.+|+.+|++.|..+|..-|+-+.-.+.|.+ .....|+ .|+=-
T Consensus 175 ~~~iv~aa~a~G~~~i~~v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ih 222 (284)
T 1sgj_A 175 RSQVALAARLTGVAALDIVVTALNDPETFRADAEQGRALGYSGKLCIH 222 (284)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSCHHHHHHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHHHcCCCeeeCCcCCCCCHHHHHHHHHHHHhCCCCcccccC
Confidence 4678999999999998888887665554444 4456788 56543
No 290
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi}
Probab=21.57 E-value=1.3e+02 Score=19.29 Aligned_cols=41 Identities=12% Similarity=-0.044 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
+..+++.|++.|+..|.-. -.++|..=.+..++.|....|-
T Consensus 112 l~~~~~~a~~~g~~~i~l~--v~~~N~~a~~~yek~GF~~~g~ 152 (182)
T 2jlm_A 112 MNELIKRAVESEVHVMVGC--IDATNVASIQLHQKLGFIHSGT 152 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEE--EETTCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCceEEEEE--EeCCCHHHHHHHHHCCCcEEEE
Confidence 6788888888898877633 2567877667779999998874
No 291
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=21.54 E-value=51 Score=26.05 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=32.0
Q ss_pred hHHHHHcC-cEEEEeecccccccccce--ecccCCCCCCCCCCCChHHHHHHHHHcCCceecCCCcc
Q psy6380 12 YDSLIQAG-TTIIILSKRKLEDSSLWL--LRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGF 75 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~a~~~~--~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHPGYGF 75 (103)
+..||+.| ++|++.+..- ..-.... .-..... .....-=++.++++|++.|.. |+.|.+|
T Consensus 60 ~~~mK~~GikyvIl~~~~~-~gf~~~pS~~~~~~~~--~~p~~Dlv~~~l~aa~k~Gmk-v~~Gly~ 122 (340)
T 4h41_A 60 FQHMKRIGIDTVIMIRSGY-RKFMTYPSPYLLKKGC--YMPSVDLVDMYLRLAEKYNMK-FYFGLYD 122 (340)
T ss_dssp HHHHHHTTCCEEEESCSEE-TTEESSCCHHHHHTTC--CCCSBCHHHHHHHHHHHTTCE-EEEECCB
T ss_pred HHHHHHcCCCEEEEEEEee-CCeeccCcccccccCc--cCCcccHHHHHHHHHHHhCCe-EEEecCC
Confidence 34689999 9998866432 1111100 0000000 011222388899999999986 4556543
No 292
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=21.44 E-value=1.6e+02 Score=21.59 Aligned_cols=72 Identities=11% Similarity=0.035 Sum_probs=41.2
Q ss_pred CCcchHHHHHcCcEEEEeecccccccccceecccCCCCCCCCCCCChHHHHHHHHHcCCceecC--CCccCCCCHHHHHH
Q psy6380 8 CKDNYDSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHP--GYGFLSEREDFAKA 85 (103)
Q Consensus 8 ~~~~~~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~~~~~sYlni~~Ii~~A~~~g~daIHP--GYGFLSEn~~Fa~~ 85 (103)
+.+-+.+|++.| ++|..+-+ +- +|.-+.-+. .|...+.+...+.||++||- --+|...+.+.-+.
T Consensus 34 ~~~~~~al~~~~--~~~IaE~k-~a---------SPskg~i~~-~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~ 100 (254)
T 1vc4_A 34 VPSFKEALLRPG--LSVIAEVK-RQ---------SPSEGLIRE-VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKR 100 (254)
T ss_dssp CCCHHHHHTSSS--CEEEEEEC-SC---------CTTTCCCCS-CCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHH
T ss_pred ccCHHHHHhhcC--CcEEeeec-CC---------CcCCCcCCC-CCHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHH
Confidence 456666776543 56666655 21 111122234 68899999999999999985 22334434444344
Q ss_pred H-HhCCCe
Q psy6380 86 V-IGAALE 92 (103)
Q Consensus 86 ~-~~~gi~ 92 (103)
+ +.-++-
T Consensus 101 i~~~v~lP 108 (254)
T 1vc4_A 101 VREAVDLP 108 (254)
T ss_dssp HHHHCCSC
T ss_pred HHHhcCCC
Confidence 4 444444
No 293
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=21.41 E-value=51 Score=24.88 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCC-----HHHHHHHHhCCCeE
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSER-----EDFAKAVIGAALEF 93 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn-----~~Fa~~~~~~gi~F 93 (103)
.+.+......+...--.|-||||..--. .++++.+++.|+..
T Consensus 34 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V 80 (203)
T 2fsv_C 34 GSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEV 80 (203)
T ss_dssp CCHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEE
T ss_pred cCHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeE
Confidence 4567777777776666899999963222 56888888888753
No 294
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=21.38 E-value=53 Score=26.41 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=28.1
Q ss_pred hHHHHHHHHHcCCceecC--CCc--cCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHP--GYG--FLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHP--GYG--FLSEn~~Fa~~~~~~gi~FIG 95 (103)
.+.|.+++++.|+++|+- .|+ ...-+..+.+.|.+.||.|.-
T Consensus 81 ~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~ 126 (484)
T 1owl_A 81 QHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQ 126 (484)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEE
Confidence 567778888888888774 232 344455666777777887653
No 295
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=21.23 E-value=1e+02 Score=22.87 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=9.7
Q ss_pred CCChHHHHHHHHHcCCc
Q psy6380 51 YLNNPEIICIANNINVD 67 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~d 67 (103)
|.....+++.|++.|+.
T Consensus 190 ~~~~~~l~~~~~~~gI~ 206 (316)
T 1us0_A 190 YLTQEKLIQYCQSKGIV 206 (316)
T ss_dssp TBCCHHHHHHHHHTTCE
T ss_pred ccCCHHHHHHHHHcCCE
Confidence 33345566666666654
No 296
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=21.16 E-value=1.4e+02 Score=17.74 Aligned_cols=41 Identities=7% Similarity=-0.158 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
+..+++.|++.|+..|.-. -.++|..-.+..++.|...+|-
T Consensus 97 l~~~~~~~~~~g~~~i~~~--~~~~N~~a~~~y~k~Gf~~~~~ 137 (162)
T 2fia_A 97 FHELEKRAVWEGRRKMYAQ--TNHTNHRMIRFFESKGFTKIHE 137 (162)
T ss_dssp HHHHHHHHHTTTCCEEEEE--EETTCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEE--ecCCCHHHHHHHHHCCCEEEee
Confidence 5667777888888776544 3578887777889999988763
No 297
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=21.14 E-value=63 Score=24.23 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=29.5
Q ss_pred CCCChHHHHHHHHHcCCceecCCC--------cc----CCCCHHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANNINVDAIHPGY--------GF----LSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHPGY--------GF----LSEn~~Fa~~~~~~gi~FI 94 (103)
+.--.-.+++.+++.|+|+|--++ || ..+-..+.+.|++.||.|+
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~ 91 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTV 91 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEE
Confidence 444455666777899999987664 33 2223456677778888775
No 298
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=21.11 E-value=39 Score=26.56 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=16.7
Q ss_pred eecCCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 68 AIHPGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 68 aIHPGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
+|+|-||=..|=.+|.++|.++||..|
T Consensus 89 ~id~~~Gt~~df~~lv~~~H~~Gi~Vi 115 (484)
T 2aaa_A 89 DVNSNFGTADNLKSLSDALHARGMYLM 115 (484)
T ss_dssp EECTTTCCHHHHHHHHHHHHTTTCEEE
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 355666655555566666667777654
No 299
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=21.09 E-value=1.6e+02 Score=18.98 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCC----------------CHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSE----------------REDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSE----------------n~~Fa~~~~~~gi~FI 94 (103)
-++..|++.+++.++..|.-+.--..+ |..+.+.+.+.|+.||
T Consensus 101 ~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~i 159 (204)
T 3p94_A 101 GNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYV 159 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 357889999998898876654322111 2235566777898887
No 300
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=20.98 E-value=1.5e+02 Score=18.77 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 56 EIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 56 ~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
.+.+...+.|||+|.-|- +. +...+.+.++||..+-
T Consensus 58 ~~~~~l~~~gv~~vi~~~--iG--~~a~~~L~~~GI~v~~ 93 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTGY--VG--PKAFQALQAAGIKVGQ 93 (120)
T ss_dssp HHHHHHHHHTEEEEECSC--CC--HHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHCCCCEEEECC--CC--HhHHHHHHHCCCEEEE
Confidence 577777779999999873 33 4455888999998874
No 301
>1y2i_A Hypothetical protein S0862; structural genomics, pentamer, protein structure initiative, PSI, midwest center for structural genomics; 2.30A {Shigella flexneri 2a str} SCOP: d.230.5.1
Probab=20.93 E-value=54 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.6
Q ss_pred hHHHHHHHHHcCCceec
Q psy6380 54 NPEIICIANNINVDAIH 70 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH 70 (103)
++++.+-|++.||+||.
T Consensus 86 l~rm~~~A~~lGAnAVV 102 (133)
T 1y2i_A 86 FEELGSQARALGADAVV 102 (133)
T ss_dssp HHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 56788999999999974
No 302
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=20.93 E-value=60 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHcCCceecCCCc----cC-CCCHHHHHHHHhCCCeEeC
Q psy6380 52 LNNPEIICIANNINVDAIHPGYG----FL-SEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYG----FL-SEn~~Fa~~~~~~gi~FIG 95 (103)
.+.+. ++.+++.|.|.|=-... +. .+-.++.+.+++.||.+.+
T Consensus 37 ~~l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 84 (309)
T 2hk0_A 37 KFGPY-IEKVAKLGFDIIEVAAHHINEYSDAELATIRKSAKDNGIILTA 84 (309)
T ss_dssp CSHHH-HHHHHHTTCSEEEEEHHHHTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccHHH-HHHHHHhCCCEEEeccCCccccchhhHHHHHHHHHHcCCeEEE
Confidence 46788 99999999998643322 11 2345677888999998754
No 303
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=20.90 E-value=1.5e+02 Score=23.83 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=32.8
Q ss_pred CCCChHHHHHHHHHcCCceec---CCCccCCCCHHHHHHHHhCCCeEe
Q psy6380 50 AYLNNPEIICIANNINVDAIH---PGYGFLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIH---PGYGFLSEn~~Fa~~~~~~gi~FI 94 (103)
-.+|.+.|-+++++.+...|. +-||....=..+++.|.++|+.++
T Consensus 188 ~~iD~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~li 235 (490)
T 2a7v_A 188 GLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLL 235 (490)
T ss_dssp CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEE
T ss_pred CCcCHHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEE
Confidence 367889888888754555543 567766666788888999988765
No 304
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=20.82 E-value=1.9e+02 Score=20.04 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 55 ~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
..+++..+..|++.|.-.+|. +..-.+.+.++||.-+.
T Consensus 68 ~~~v~kI~~~g~nVVl~~k~I---~d~a~~~l~k~gI~~vr 105 (178)
T 1gml_A 68 HQLCEDIIQLKPDVVITEKGI---SDLAQHYLMRANVTAIR 105 (178)
T ss_dssp HHHHHHHHTTCCSEEEESSCB---CHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHhhcCCcEEEECCcc---cHHHHHHHHHCCCEEEe
Confidence 345566678999999999998 44444667899988765
No 305
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=20.70 E-value=1.3e+02 Score=24.46 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHcCCcee------cCCCcc----CCC----C-----------HHHHHHHHhCCCeEe
Q psy6380 51 YLNNPEIICIANNINVDAI------HPGYGF----LSE----R-----------EDFAKAVIGAALEFI 94 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daI------HPGYGF----LSE----n-----------~~Fa~~~~~~gi~FI 94 (103)
-.|.+..++++|++|+..| |-|+-. .+. + .+|+++|++.||.|.
T Consensus 53 ~fd~~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~~p~~~~k~Div~e~~~A~r~~Gl~~g 121 (469)
T 3eyp_A 53 ALDCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAG 121 (469)
T ss_dssp SCCHHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCcccccCcccCCCCCHHHHHHHHHHHcCCeEE
Confidence 4899999999999999975 333221 111 1 179999999999984
No 306
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=20.70 E-value=43 Score=25.83 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHcCCcee-------------------------cCCCccCCCCHHHHHHHHhCCCeEeCCChhhhc
Q psy6380 51 YLNNPEIICIANNINVDAI-------------------------HPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~daI-------------------------HPGYGFLSEn~~Fa~~~~~~gi~FIGP~~~~m~ 102 (103)
-|+...++.+|+-.|.... ..|..-||+ .++..+|...||+..|-+.+.|+
T Consensus 97 nLsr~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~I~~DDr~I~~EGV~sLs~-~ELr~AC~~RGm~~~gls~e~LR 172 (249)
T 3skq_A 97 NLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQ-EELYQACVSRGMKAYGVSKEDLV 172 (249)
T ss_dssp HSCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCH-HHHHHHHHHTTCCCTTCCHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHhCcccCCH-HHHHHHHHHcCCCCCCCCHHHHH
Confidence 3556666777777776542 134445774 66999999999999999998876
No 307
>3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str}
Probab=20.68 E-value=1.5e+02 Score=17.98 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=31.1
Q ss_pred hHHHHHHHHHc-CCceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNI-NVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~-g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
+..+++.|++. |+..|.-.. .++|..=.+..++.|....|-
T Consensus 104 l~~~~~~a~~~~~~~~i~l~v--~~~N~~a~~~y~k~GF~~~g~ 145 (168)
T 3fbu_A 104 AQATLKYGFKEMKLHRIIATC--QPENTPSYRVMEKIGMRREGY 145 (168)
T ss_dssp HHHHHHHHHHTSCCSEEEEEE--CTTCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhhCCceEEEEEe--ccCChHHHHHHHHCCCeEEEE
Confidence 55788888776 888776443 678887777889999998873
No 308
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=20.67 E-value=72 Score=21.53 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=32.8
Q ss_pred CCCChHHHHHHHHHcCCceecC---CCccCCCCHHHHHHHHhCCCeE
Q psy6380 50 AYLNNPEIICIANNINVDAIHP---GYGFLSEREDFAKAVIGAALEF 93 (103)
Q Consensus 50 sYlni~~Ii~~A~~~g~daIHP---GYGFLSEn~~Fa~~~~~~gi~F 93 (103)
.|+=...|-+-|++.|++.|.. ||-+=+-=..|++.+.++||.|
T Consensus 70 A~~vG~llA~Ral~~GI~~vvfDrgg~~yhGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 70 AAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHHHHHHHHHHHHTTTCCCCEEECTTSCSSSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHhCCCC
Confidence 4555666777788999887654 5555556677899999999987
No 309
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=20.50 E-value=80 Score=23.85 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHcCCc--eecCCCccCCCCHH
Q psy6380 53 NNPEIICIANNINVD--AIHPGYGFLSERED 81 (103)
Q Consensus 53 ni~~Ii~~A~~~g~d--aIHPGYGFLSEn~~ 81 (103)
+...+++.+++.+.+ .||-..|--.++++
T Consensus 155 ~~~~~~~~~~~~~l~~~Gl~~H~gs~~~~~~ 185 (372)
T 2nva_A 155 EIRHLLEYAKQLDIEVIGISFHVGSGSRNPE 185 (372)
T ss_dssp GHHHHHHHHHHTTCCEEEEECCCCBSBCCHH
T ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCCCHH
Confidence 345556655554543 57888776555544
No 310
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=20.48 E-value=1.2e+02 Score=18.61 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=24.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
...|-++|+..|.|. ..|.+.++++|...+|
T Consensus 49 ~~TL~~aa~~~gid~-----------d~l~~~L~~~g~~~~~ 79 (81)
T 2fi0_A 49 KVSLKQGSKLAGTPM-----------DKIVRTLEANGYEVIG 79 (81)
T ss_dssp HCBHHHHHHHHTCCH-----------HHHHHHHHHTTCEEEC
T ss_pred cCcHHHHHHHcCCCH-----------HHHHHHHHHcCCEeeC
Confidence 456778888888765 5688888899988876
No 311
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=20.46 E-value=59 Score=24.20 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHcCCceecCCCccCCCC-----HHHHHHHHhCCCe
Q psy6380 52 LNNPEIICIANNINVDAIHPGYGFLSER-----EDFAKAVIGAALE 92 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPGYGFLSEn-----~~Fa~~~~~~gi~ 92 (103)
.+.+......+...--.|-||||..--. .++++.+++.|+.
T Consensus 10 ~~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~ 55 (184)
T 1d4o_A 10 INLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKK 55 (184)
T ss_dssp CCHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCE
T ss_pred cCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 3566666777766666788999963222 3677888888865
No 312
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=20.40 E-value=48 Score=26.79 Aligned_cols=42 Identities=5% Similarity=0.000 Sum_probs=29.8
Q ss_pred hHHHHHHHHHcCCceecC----CCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 54 NPEIICIANNINVDAIHP----GYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHP----GYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
.+.|.+++++.|+++|+- ......-+..+.+.|.+.||.|.-
T Consensus 90 ~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~ 135 (509)
T 1u3d_A 90 VASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRS 135 (509)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEE
Confidence 477889999999999973 222334445567778888988754
No 313
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=20.39 E-value=1.5e+02 Score=18.47 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=30.2
Q ss_pred hHHHHHHHHHcCCceecCCCccCCCCHHHHHHHHhCCCeEeCC
Q psy6380 54 NPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIGP 96 (103)
++.+++.|++.|+..|.=. -.++|..=.+..++.|...+|-
T Consensus 104 l~~~~~~a~~~g~~~i~l~--v~~~N~~a~~~y~k~GF~~~g~ 144 (172)
T 2j8m_A 104 LQALIERARAQGLHVMVAA--IESGNAASIGLHRRLGFEISGQ 144 (172)
T ss_dssp HHHHHHHHHHTTCCEEEEE--EETTCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCccEEEEE--EcCCCHHHHHHHHHCCCEEEee
Confidence 6778888888898877522 2367876666779999998874
No 314
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=20.39 E-value=1.3e+02 Score=23.18 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=32.4
Q ss_pred CCCCChHHHHHHHH---HcCCceecCCCccCCCCHHHHHHHHhCCCeEeC
Q psy6380 49 AAYLNNPEIICIAN---NINVDAIHPGYGFLSEREDFAKAVIGAALEFIG 95 (103)
Q Consensus 49 ~sYlni~~Ii~~A~---~~g~daIHPGYGFLSEn~~Fa~~~~~~gi~FIG 95 (103)
-+|-+.+..++-|. +.||++|+--=| .+..+..+++.++||...|
T Consensus 100 gsY~s~~~a~~~a~rl~kaGa~aVklEdg--~~~~~~i~~l~~~GIpv~g 147 (275)
T 3vav_A 100 GTYGTPADAFASAVKLMRAGAQMVKFEGG--EWLAETVRFLVERAVPVCA 147 (275)
T ss_dssp TSCSSHHHHHHHHHHHHHTTCSEEEEECC--GGGHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCc--hhHHHHHHHHHHCCCCEEE
Confidence 37888888765442 359999984444 3567888889999988765
No 315
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=20.36 E-value=2.9e+02 Score=21.14 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=31.9
Q ss_pred hHHHHHcC-cEEEEeecccccc---cccceeccc-CCCCCCCCCCCC----hHHHHHHHHHcCCce-ecCCCc
Q psy6380 12 YDSLIQAG-TTIIILSKRKLED---SSLWLLRDQ-GKRMPPVAAYLN----NPEIICIANNINVDA-IHPGYG 74 (103)
Q Consensus 12 ~~~~~~~g-~tvai~t~~dl~~---a~~~~~AD~-~~~~~~~~sYln----i~~Ii~~A~~~g~da-IHPGYG 74 (103)
..+|.+.| +-++|+|.+| +. +.+...|.+ +...-..+++-+ .+.+++..++.++|. |-.|||
T Consensus 38 L~~L~~~~~~i~~Vvt~pd-~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 109 (329)
T 2bw0_A 38 YCHLRKEGHEVVGVFTVPD-KDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCS 109 (329)
T ss_dssp HHHHHHTTCEEEEEEECCC-CSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSCS
T ss_pred HHHHHHCCCeEEEEEeCCC-cCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEeehh
Confidence 35677778 8889999776 31 122222211 111001111211 256677777777775 457777
No 316
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=20.35 E-value=1e+02 Score=22.16 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=10.5
Q ss_pred cCcEEEEeeccc
Q psy6380 18 AGTTIIILSKRK 29 (103)
Q Consensus 18 ~g~tvai~t~~d 29 (103)
+|+.||+++..|
T Consensus 101 ~g~~Vv~l~~GD 112 (251)
T 2npn_A 101 DDGAVAFLVWGD 112 (251)
T ss_dssp TTCEEEEEESBC
T ss_pred CCCeEEEEeCCC
Confidence 589999999877
No 317
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=20.33 E-value=44 Score=25.88 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=27.2
Q ss_pred chHHHHHcCcEEEEeecccccccccceecccCCCC-------CCCCCCCChHHHHHHHHHcCCcee
Q psy6380 11 NYDSLIQAGTTIIILSKRKLEDSSLWLLRDQGKRM-------PPVAAYLNNPEIICIANNINVDAI 69 (103)
Q Consensus 11 ~~~~~~~~g~tvai~t~~dl~~a~~~~~AD~~~~~-------~~~~sYlni~~Ii~~A~~~g~daI 69 (103)
..+-|++.|=|.+-+++.= ... .+++... +.--+--+..++++.|++.|...|
T Consensus 28 ~LdyL~~LGv~~I~L~Pi~-~~~-----~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~Vi 87 (441)
T 1lwj_A 28 AVSYLKELGIDFVWLMPVF-SSI-----SFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVV 87 (441)
T ss_dssp THHHHHHTTCCEEEECCCE-ECS-----SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHcCCCEEEeCCCc-CCC-----CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 3467899996666666642 211 2333321 000112345566666777776664
No 318
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=20.26 E-value=1.1e+02 Score=21.68 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHHcCCce--ecCC-CccCCCCHHHHHHHHhCCCe
Q psy6380 51 YLNNPEIICIANNINVDA--IHPG-YGFLSEREDFAKAVIGAALE 92 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~da--IHPG-YGFLSEn~~Fa~~~~~~gi~ 92 (103)
|.+....+..+++.|.-. -||+ |.+..++++..+.+.+.|+.
T Consensus 119 ~~~~~~~i~~i~~~g~~~vlaHp~r~~~~~~~~~~l~~l~~~G~~ 163 (247)
T 2wje_A 119 YRDIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCY 163 (247)
T ss_dssp HHHHHHHHHHHHTTTCEEEETTGGGCGGGTTCHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHHCCCcEEEEehhhHHHHhhCHHHHHHHHHCCCE
Confidence 344555666666666433 3665 33445566667777777765
No 319
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=20.25 E-value=67 Score=20.87 Aligned_cols=43 Identities=7% Similarity=0.027 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHcCCceecCC--CccCCC-----------CHHHHHHHHhCCCeEe
Q psy6380 52 LNNPEIICIANNINVDAIHPG--YGFLSE-----------REDFAKAVIGAALEFI 94 (103)
Q Consensus 52 lni~~Ii~~A~~~g~daIHPG--YGFLSE-----------n~~Fa~~~~~~gi~FI 94 (103)
-++..|++.+++.++..|.-+ +.-..+ |..+.+.+.+.|+.||
T Consensus 117 ~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~v 172 (216)
T 3rjt_A 117 DTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFV 172 (216)
T ss_dssp HHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 467889999988898877654 221111 2334455666788776
No 320
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=20.23 E-value=1.1e+02 Score=22.72 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=11.7
Q ss_pred CCChHHHHHHHHHcCCce
Q psy6380 51 YLNNPEIICIANNINVDA 68 (103)
Q Consensus 51 Ylni~~Ii~~A~~~g~da 68 (103)
|+....+++.|++.|+..
T Consensus 197 ~~~~~~l~~~~~~~gi~v 214 (324)
T 3ln3_A 197 YLNQRXLLDYCESXDIVL 214 (324)
T ss_dssp TBCCHHHHHHHHHTTCEE
T ss_pred ccchHHHHHHHHHcCCEE
Confidence 444566777777777654
No 321
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=20.20 E-value=1.1e+02 Score=23.89 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=30.4
Q ss_pred CCCCChHHHHHHHHHcCCcee----cCCCc---------cCCCCHHHHHHHHhCCCeEe
Q psy6380 49 AAYLNNPEIICIANNINVDAI----HPGYG---------FLSEREDFAKAVIGAALEFI 94 (103)
Q Consensus 49 ~sYlni~~Ii~~A~~~g~daI----HPGYG---------FLSEn~~Fa~~~~~~gi~FI 94 (103)
..-..++.+++.|++.|.++| |--++ -+..-.++.+.+++.||.+|
T Consensus 31 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi 89 (343)
T 3e38_A 31 DGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLI 89 (343)
T ss_dssp TCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEEC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEE
Confidence 567889999999999999975 32111 12222456666777777654
No 322
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=20.05 E-value=1e+02 Score=22.92 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=25.4
Q ss_pred hHHHHHHHHHcC---CceecCCCccCCCC--HHHHHHHHhCCCeEeCCCh
Q psy6380 54 NPEIICIANNIN---VDAIHPGYGFLSER--EDFAKAVIGAALEFIGPTT 98 (103)
Q Consensus 54 i~~Ii~~A~~~g---~daIHPGYGFLSEn--~~Fa~~~~~~gi~FIGP~~ 98 (103)
++.++++++..| .+++-.-|-.+.-. .++.+.|+++||.++.-++
T Consensus 186 l~~~~~~~~~~~~~~~~~~Q~~~~l~~~~~~~~l~~~~~~~gi~v~a~sp 235 (346)
T 1lqa_A 186 VMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSC 235 (346)
T ss_dssp HHHHHHHHHHHTCCCCCEEEEECBTTBCTHHHHHHHHHHHHCCEEEEECT
T ss_pred HHHHHHHHHHcCCCCceEEeccCChhhchhHHHHHHHHHHcCCeEEEecc
Confidence 345556665543 44444445444433 4577778888887775443
No 323
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=20.01 E-value=1.8e+02 Score=23.28 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=34.5
Q ss_pred hHHHHHHHHHcCCceec--CCCccCCCCHHHHHHHHhCCCeEeCCChh
Q psy6380 54 NPEIICIANNINVDAIH--PGYGFLSEREDFAKAVIGAALEFIGPTTN 99 (103)
Q Consensus 54 i~~Ii~~A~~~g~daIH--PGYGFLSEn~~Fa~~~~~~gi~FIGP~~~ 99 (103)
.+.|++..++.|++.|+ || +-+-.|.+++.+.+|+||+-.-|
T Consensus 11 a~~l~~~L~~~GV~~vfg~PG----~~~~~l~~al~~~~i~~i~~~hE 54 (564)
T 2q28_A 11 MHIIVEALKQNNIDTIYGVVG----IPVTDMARHAQAEGIRYIGFRHE 54 (564)
T ss_dssp HHHHHHHHHHTTCCEEEECCC----TTTHHHHHHHHHTTCEEEECSSH
T ss_pred HHHHHHHHHHcCCCEEEECCC----cchHHHHHHHHhCCCcEEeeCCH
Confidence 68899999999999864 66 56777888888789999987654
Done!