RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6380
(103 letters)
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 87.5 bits (218), Expect = 1e-21
Identities = 34/61 (55%), Positives = 41/61 (67%)
Query: 42 GKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101
G+ PV AYL+ EII +A VDAIHPGYGFLSE +FA+A A + FIGPT VL
Sbjct: 55 GEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVL 114
Query: 102 K 102
+
Sbjct: 115 R 115
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 80.1 bits (198), Expect = 5e-19
Identities = 33/60 (55%), Positives = 38/60 (63%)
Query: 42 GKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101
G+ PV AYL+ EII IA DAIHPGYGFLSE +FA+A A + FIGP VL
Sbjct: 57 GEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVL 116
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 78.7 bits (194), Expect = 2e-18
Identities = 31/62 (50%), Positives = 39/62 (62%)
Query: 41 QGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNV 100
+G + P+ AYL+ EII +A VDAIHPGYGFLSE +FA A A + FIGP V
Sbjct: 50 EGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEV 109
Query: 101 LK 102
+
Sbjct: 110 MD 111
>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain,
N-terminal domain. Carbamoyl-phosphate synthase
catalyzes the ATP-dependent synthesis of
carbamyl-phosphate from glutamine or ammonia and
bicarbonate. This important enzyme initiates both the
urea cycle and the biosynthesis of arginine and/or
pyrimidines. The carbamoyl-phosphate synthase (CPS)
enzyme in prokaryotes is a heterodimer of a small and
large chain. The small chain promotes the hydrolysis of
glutamine to ammonia, which is used by the large chain
to synthesise carbamoyl phosphate. See pfam00988. The
small chain has a GATase domain in the carboxyl
terminus. See pfam00117.
Length = 108
Score = 71.4 bits (176), Expect = 1e-17
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
P +YLN I+ IA DAIHPGYGFLSE +FA+A A + FIGP+
Sbjct: 54 PASESYLNIERILDIAEKEGADAIHPGYGFLSENAEFAEACEEAGITFIGPS 105
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 69.6 bits (171), Expect = 2e-15
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102
PP +YLN II +A DAIHPGYGFL+E +FAKA A + FIGP+++V++
Sbjct: 55 PPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIE 111
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 69.2 bits (170), Expect = 3e-15
Identities = 28/51 (54%), Positives = 32/51 (62%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96
P +YL+ +II A AIHPGYGFLSE DFA+AV A L FIGP
Sbjct: 55 PAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGP 105
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 67.9 bits (167), Expect = 7e-15
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 46 PPVAA--YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
P + YLN P II A DAIHPGYGFLSE DFA+ + FIGP+
Sbjct: 53 PAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPS 106
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
subunit; Provisional.
Length = 467
Score = 66.3 bits (162), Expect = 3e-14
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 38 LRDQGKRMPPVAA---YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFI 94
+ D+ + P A YLN I+ A DAIHPGYGFLSE FA+AV A L F+
Sbjct: 47 MADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFV 106
Query: 95 GPTTNVLKT 103
GP ++T
Sbjct: 107 GPDAQTIRT 115
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 64.4 bits (157), Expect = 1e-13
Identities = 29/56 (51%), Positives = 37/56 (66%)
Query: 47 PVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102
P+ YL+ I+ IA DAIHPGYGFLSE +FAKAV A + FIGP + V++
Sbjct: 55 PIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIR 110
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 63.9 bits (156), Expect = 2e-13
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 46 PPVA-AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLKT 103
P V +YLN +II IA +AIHPGYG LSE FA+ + FIGP+ +++
Sbjct: 54 PRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAK 112
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 64.2 bits (157), Expect = 2e-13
Identities = 28/52 (53%), Positives = 31/52 (59%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
P +YLN II A DAIHPGYGFLSE FA+A A L FIGP+
Sbjct: 55 PSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPS 106
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 449
Score = 63.6 bits (155), Expect = 3e-13
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLKT 103
P +YLN P II A DAIHPGYGFLSE +FA+ + FIGP+ ++
Sbjct: 55 PSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRL 112
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as urea
[Central intermediary metabolism, Nitrogen metabolism].
Length = 1201
Score = 62.0 bits (151), Expect = 1e-12
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
YL+ +I+ A AIHPGYGFLSE FA+A A + F+GPT
Sbjct: 59 YLDIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPT 105
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated.
Length = 472
Score = 61.3 bits (149), Expect = 2e-12
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 47 PVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLKT 103
P+A YLN ++ +A DA+HPGYGFLSE + A+ ++FIGP+ V++
Sbjct: 55 PLAGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRR 111
>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated.
Length = 445
Score = 57.4 bits (139), Expect = 5e-11
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 50 AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101
+YLN P II A DAI PGYGFLSE ++F + ++FIGP+ V+
Sbjct: 61 SYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVM 112
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 47.4 bits (113), Expect = 1e-07
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 50 AYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101
+YLN II AIHPG+GFLSE FAK + FIGP + +
Sbjct: 59 SYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETI 110
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 28.8 bits (65), Expect = 0.50
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 50 AYLNNPEIICIANNINVDAIHPGYGFLSERED 81
AY N ++C+ I I G G L E D
Sbjct: 90 AYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121
>gnl|CDD|202625 pfam03418, Peptidase_A25, Germination protease.
Length = 354
Score = 27.0 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 64 INVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNV 100
I+ IHPG G ++R++ + +G + IG T V
Sbjct: 193 ISDSGIHPGSGVGNKRKEISYETLGIPVIAIGIPTVV 229
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase is known only
as a fungal enzyme from two species, where it is part of
an unusual lysine biosynthesis pathway. Because This
model is based on just two sequences from a narrow
taxonomic range, it may not recognize distant orthologs,
should any exist. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures, but 3-isopropylmalate dehydratase is split
into large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble leuC and
leuD over their lengths but are even closer to the
respective domains of homoaconitase, and their identity
is uncertain [Amino acid biosynthesis, Aspartate
family].
Length = 712
Score = 26.9 bits (59), Expect = 2.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 57 IICIANNINVDAIHPG 72
+ C A+NIN D I+PG
Sbjct: 536 VFCDADNINTDGIYPG 551
>gnl|CDD|214921 smart00934, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS
family. Orotidine 5'-phosphate decarboxylase
(OMPdecase) catalyzes the last step in the de novo
biosynthesis of pyrimidines, the decarboxylation of OMP
into UMP. In higher eukaryotes OMPdecase is part, with
orotate phosphoribosyltransferase, of a bifunctional
enzyme, while the prokaryotic and fungal OMPdecases are
monofunctional protein.
Length = 212
Score = 26.4 bits (59), Expect = 2.5
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 27 KRKLEDSSLWLL----RDQGKRMPPVAAYLNNPEII 58
R+ +L DQG+ P A +II
Sbjct: 158 IRRALGPDFLILTPGIGDQGRVATPAVAIGAGADII 193
>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase. This model
describes 2-deoxy-D-gluconate 3-dehydrogenase (also
called 2-keto-3-deoxygluconate oxidoreductase), a member
of the family of short-chain-alcohol dehydrogenases
(pfam00106). This protein has been characterized in
Erwinia chrysanthemi as an enzyme of pectin degradation
[Energy metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 248
Score = 26.3 bits (58), Expect = 2.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 61 ANNINVDAIHPGY 73
A INV+AI PGY
Sbjct: 173 AKGINVNAIAPGY 185
>gnl|CDD|218318 pfam04898, Glu_syn_central, Glutamate synthase central domain. The
central domain of glutamate synthase connects the amino
terminal amidotransferase domain with the FMN-binding
domain and has an alpha / beta overall topology. This
domain appears to be a rudimentary form of the
FMN-binding TIM barrel according to SCOP.
Length = 288
Score = 26.0 bits (58), Expect = 3.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 13 DSLIQAGTTIIILSKRKL 30
+ +++G TII+LS R L
Sbjct: 150 EEAVRSGATIIVLSDRNL 167
>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tyrosine hydroxylase (TyrOH). TrpOH oxidizes
L-tryptophan to 5-hydroxy-L-tryptophan, the
rate-limiting step in the biosynthesis of serotonin
(5-hydroxytryptamine), a widely distributed hormone and
neurotransmitter.
Length = 287
Score = 25.5 bits (56), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 29 KLEDSSLWLLRDQGKRMPPVAAYLN 53
+LED S +L G + PVA YL+
Sbjct: 108 QLEDVSRFLKERTGFTIRPVAGYLS 132
>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric.
This model describes tryptophan 5-monooxygenase, a
member of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tyrosine
3-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria [Energy metabolism, Amino acids
and amines].
Length = 464
Score = 25.2 bits (55), Expect = 8.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 29 KLEDSSLWLLRDQGKRMPPVAAYLN 53
+LED S +L G R+ PVA YL+
Sbjct: 237 QLEDVSKFLKAKTGFRLRPVAGYLS 261
>gnl|CDD|238837 cd01674, Homoaconitase_Swivel, Homoaconitase swivel domain. This
family includes homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase is part
of an unusual lysine biosynthesis pathway found only in
filamentous fungi, in which lysine is synthesized via
the alpha-aminoadipate pathway. In this pathway,
homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases. This is the swivel domain, which is
believed to undergo swivelling conformational change in
the enzyme mechanism.
Length = 129
Score = 24.9 bits (54), Expect = 8.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 59 CIANNINVDAIHPG 72
C A+N+N D I+PG
Sbjct: 1 CDADNLNTDGIYPG 14
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 25.0 bits (55), Expect = 8.9
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 24 ILSKRKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNIN----VDAIHPG 72
IL + + L+ QG A L + IC N + + AI G
Sbjct: 381 ILKGADISEIRDTLILPQGSAPSLGVAALPDSAQICGCNGVTKGAIIGAITKG 433
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,457,349
Number of extensions: 468401
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 35
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)