RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6380
(103 letters)
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 94.3 bits (235), Expect = 3e-24
Identities = 30/61 (49%), Positives = 36/61 (59%)
Query: 42 GKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101
G + P +YLN II +A NVDAIHPGYGFLSE E FA+ ++FIGP L
Sbjct: 54 GSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHL 113
Query: 102 K 102
Sbjct: 114 D 114
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 90.6 bits (226), Expect = 5e-23
Identities = 31/61 (50%), Positives = 36/61 (59%)
Query: 42 GKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101
G+ P+ AYL+ II IA +VDAIHPGYGFLSE FAK + FIGP N L
Sbjct: 56 GEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHL 115
Query: 102 K 102
Sbjct: 116 D 116
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 90.5 bits (225), Expect = 6e-23
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 43 KRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLK 102
+ + P+ +YL+ E+I +A DAIHPGYG LSE +F A A + FIGP + ++
Sbjct: 71 RDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMR 130
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 78.7 bits (195), Expect = 7e-19
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
P+ YLN II +A + DAIHPGYGFL+E +FAK A + FIGP
Sbjct: 54 DPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPH 105
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 77.4 bits (191), Expect = 2e-18
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
YL+ +II A AI PGYGFLSE DF+ + F+GP+
Sbjct: 84 TAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPS 135
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 77.3 bits (191), Expect = 2e-18
Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 40 DQGKRMPPVAA---YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96
D + YL II A AIHPGYGFLSE DFA+A A L F+GP
Sbjct: 72 DIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGP 131
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 76.2 bits (188), Expect = 6e-18
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGP 96
P +Y+ +++ A+HPGYGFLSE FA+A+ + F+GP
Sbjct: 55 PANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGP 105
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 76.0 bits (188), Expect = 7e-18
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLKT 103
+YLN P II A DAI PGYGFLSE ++F + ++FIGP+ +
Sbjct: 59 RSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNL 116
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 75.6 bits (187), Expect = 9e-18
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
+YLN P I+ IA + D +HPGYGFL+E DFA+ L+FIGP+
Sbjct: 54 LSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPS 105
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 75.4 bits (186), Expect = 1e-17
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV--IGAALEFIGPT 97
Y N I+ IA +VDA+ G+G SE + + + FIGP
Sbjct: 111 TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPP 164
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 75.2 bits (186), Expect = 1e-17
Identities = 27/58 (46%), Positives = 33/58 (56%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLKT 103
P V +YLN P II A AIHPGYGFLSE +FA+ V + FIGP ++
Sbjct: 55 PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRL 112
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 73.9 bits (182), Expect = 5e-17
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 46 PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
P Y N I+ IA I V A+ G+G SE + + + F+GP
Sbjct: 120 PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPP 171
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 72.7 bits (179), Expect = 1e-16
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 51 YLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPT 97
Y N I+ IA I V A+ G+G SE + + + F+GP
Sbjct: 109 YANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPP 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 1e-04
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 21/78 (26%)
Query: 8 CKDNYDSLIQAGTT----IIILSKRKLEDSS--LWLLRDQGKRMPPVAAYLNNPEIICIA 61
CKD D + II+SK + + W L + + M V ++
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVE-------- 84
Query: 62 NNINVDAIHPGYGFLSER 79
+ + Y FL
Sbjct: 85 -----EVLRINYKFLMSP 97
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod
phosphodiesterase, HB8; 1.30A {Thermus thermophilus}
SCOP: c.1.18.3 PDB: 1v8e_A
Length = 224
Score = 27.2 bits (61), Expect = 0.81
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 32 DSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSER 79
+L LR +P +L + + + V+A+HP + ++E
Sbjct: 132 PLALLALRKAAPGLP--LGFLMAEDHSALLPCLGVEAVHPHHALVTEE 177
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.89A {Parabacteroides distasonis}
Length = 238
Score = 26.0 bits (58), Expect = 2.4
Identities = 7/55 (12%), Positives = 13/55 (23%), Gaps = 2/55 (3%)
Query: 32 DSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAV 86
+ + +YLN + + Y L D+ K
Sbjct: 140 MDACKEFIRLCPKSE--VSYLNGELSPMELKELGFTGLDYHYKVLQSHPDWVKDC 192
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 2.5
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 15/40 (37%)
Query: 28 RKLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIANNINVD 67
+KL+ +SL K +A P +A ++
Sbjct: 23 KKLQ-ASL-------KLYADDSA----P---ALAIKATME 47
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 25.1 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 63 NINVDAIHPGY------GFLSEREDFAKAVIG 88
NI +AI PGY L E + F V
Sbjct: 181 NIQTNAIGPGYILTDMNTALIEDKQFDSWVKS 212
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 25.2 bits (56), Expect = 4.4
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 63 NINVDAIHPGY------GFLSEREDFAKAVIGA 89
+INV+ I PG ++ +A +
Sbjct: 204 HINVNVIAPGRFPSRMTRHIANDPQALEADSAS 236
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 25.2 bits (56), Expect = 4.6
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 63 NINVDAIHPGY------GFLSEREDFAKAVIG 88
I V+ I PG+ + + ++
Sbjct: 194 GIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLK 225
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2,
protein structure initiative, midwest center for STR
genomics, hydrolase; 2.60A {Shigella flexneri}
Length = 247
Score = 24.9 bits (55), Expect = 4.8
Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 34 SLWLLRDQGKRMPPVAAYLNNP-EIICIANNINVDAIHPGYGFLSER 79
+L + +P + + + +IH + L +
Sbjct: 152 ALEAAQQAAPELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKA 198
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 24.5 bits (54), Expect = 7.2
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 63 NINVDAIHPGY 73
NI V++++PG
Sbjct: 230 NIRVNSVNPGA 240
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 24.5 bits (54), Expect = 7.7
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 63 NINVDAIHPGY 73
NI + I PGY
Sbjct: 205 NIQCNGIGPGY 215
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 24.4 bits (54), Expect = 8.5
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 63 NINVDAIHPGY 73
+ V+A+ PGY
Sbjct: 200 GVGVNALAPGY 210
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Length = 163
Score = 24.2 bits (53), Expect = 8.6
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 57 IICIANNINVDAIHPG-YGFLSEREDFAK 84
+ ++I+ D I PG Y + ++ AK
Sbjct: 7 VWKFGDDISTDEITPGRYNLTKDPKELAK 35
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 24.0 bits (53), Expect = 9.8
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 63 NINVDAIHPGY 73
NI V+++ PG
Sbjct: 193 NIRVNSVAPGV 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,630,384
Number of extensions: 89037
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 59
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)