RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6380
         (103 letters)



>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 170

 Score = 53.5 bits (128), Expect = 7e-11
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 43  KRMPPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA--LEFIGPTTNV 100
                   Y N   I+ IA   +VDA+  G+G  SE     + +  +   + FIGP  N 
Sbjct: 107 PGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNA 166

Query: 101 LKT 103
           +++
Sbjct: 167 MRS 169


>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
           domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 114

 Score = 51.5 bits (123), Expect = 2e-10
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 46  PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLKT 103
            P+  YLN   II +A  +  DAIHPGYGFL+E  +FAK    A + FIGP   V++ 
Sbjct: 54  DPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIEL 111


>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 114

 Score = 47.7 bits (113), Expect = 5e-09
 Identities = 27/58 (46%), Positives = 33/58 (56%)

Query: 46  PPVAAYLNNPEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAALEFIGPTTNVLKT 103
           P V +YLN P II  A      AIHPGYGFLSE  +FA+ V  +   FIGP    ++ 
Sbjct: 55  PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRL 112


>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus
           subtilis [TaxId: 1423]}
          Length = 270

 Score = 25.3 bits (55), Expect = 1.5
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 69  IHPGYGFLSEREDFAKAVIGAALEFIGPTTNVL 101
           +H     +      A AVI A ++ +     ++
Sbjct: 34  VHSSLSSIGWVNGGAVAVIQALIDVVTEEGTIV 66


>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 244

 Score = 24.9 bits (54), Expect = 2.1
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 13/43 (30%)

Query: 62  NNINVDAIHPGY-------------GFLSEREDFAKAVIGAAL 91
             +    + P +             G   E E+    ++   L
Sbjct: 180 TGVKTTCLCPNFVNTGFIKNPSTSLGPTLEPEEVVNRLMHGIL 222


>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
          C-terminal domain {Rhodobacter capsulatus [TaxId:
          1061]}
          Length = 654

 Score = 24.1 bits (51), Expect = 4.1
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 55 PEIICIANNINVDAIHPGYGFLSEREDFAKAVIGAA 90
          P I+ +   +  D+   G   +  R D   A+ GAA
Sbjct: 1  PAILTLDQALAADSRFEGGPVIWARGDVETALAGAA 36


>d1l5oa_ c.39.1.1 (A:) Nicotinate
          mononucleotide:5,6-dimethylbenzimidazole
          phosphoribosyltransferase (CobT) {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 346

 Score = 23.3 bits (50), Expect = 7.2
 Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 29 KLEDSSLWLLRDQGKRMPPVAAYLNNPEIICIA 61
          +LE  ++ L    G    P    +    ++ + 
Sbjct: 35 RLETLAVQLAGMPGLNGTPQ---VGEKAVLVMC 64


>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 175

 Score = 23.3 bits (50), Expect = 7.5
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 69  IHPGYGFLSEREDFAKAVIGAALEFIGPTTNV 100
           + P     +E E  ++         IGP  ++
Sbjct: 106 VDPKKLSRNELERLSRRFFSEIQVIIGPYNDI 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,284
Number of extensions: 16336
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 11
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)