BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6382
         (125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
           Complexed With Glycerol And Sulfate From Mycobacterium
           Tuberculosis H37rv
          Length = 362

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 80  CQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQF 117
           C+L  G   G++     V ++ + + +  +FPA  V+F
Sbjct: 14  CELGTGLSIGIVGATGQVGQVMRTLLDERDFPASAVRF 51


>pdb|2WVN|A Chain A, Structure Of The Het-S N-Terminal Domain
          Length = 229

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 87  PTGLISGFSNVRELYQKIAECYEFPAEEVQFG 118
           P G+++G  NV  L+    +C+E+    VQ G
Sbjct: 6   PFGIVAGALNVAGLFNNCVDCFEY----VQLG 33


>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
           (Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
           Bulgaricus Atcc Baa-365 At 1.51 A Resolution
 pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
           (Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
           Bulgaricus Atcc Baa-365 At 1.51 A Resolution
          Length = 240

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 68  VTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQ 116
           V E  KP    HCQ+  G   G++    N+R+   K+A     P E VQ
Sbjct: 93  VLEVFKPYYADHCQIKTGPFPGILDLXKNLRQKGVKLAVVSNKPNEAVQ 141


>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
           From Tobacco Plants And Structural Insights For Its
           Instability
          Length = 295

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 50  NVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIA 105
            +G H +  YN      P    +   L F  +L HG+  GL++  + ++ +  K +
Sbjct: 30  RLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGANAGLVNALNLLKPIKDKYS 85


>pdb|2B5U|A Chain A, Crystal Structure Of Colicin E3 V206c Mutant In Complex
           With Its Immunity Protein
 pdb|2B5U|C Chain C, Crystal Structure Of Colicin E3 V206c Mutant In Complex
           With Its Immunity Protein
          Length = 551

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 36  TRKPKKDDHLLDNNNVGEHKSKIYNGTKS------PAPVTEDSK 73
           +RK K+D      NN+ + K+K   G K       PAP TE+ K
Sbjct: 431 SRKKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPKTENIK 474


>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
           Immunity Protein
 pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
           Immunity Protein
          Length = 551

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 36  TRKPKKDDHLLDNNNVGEHKSKIYNGTKS------PAPVTEDSK 73
           +RK K+D      NN+ + K+K   G K       PAP TE+ K
Sbjct: 431 SRKKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPKTENIK 474


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.136    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,963,000
Number of Sequences: 62578
Number of extensions: 159193
Number of successful extensions: 289
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 6
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)