BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6382
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z254|GIPC1_RAT PDZ domain-containing protein GIPC1 OS=Rattus norvegicus GN=Gipc1
PE=1 SV=2
Length = 333
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 53/101 (52%), Gaps = 17/101 (16%)
Query: 32 MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDS---------------KPKL 76
MPL + KK L++N +S + G P P+ +P+L
Sbjct: 1 MPLGLGRRKKAPPLVENEEAEPSRSGL--GVGEPGPLGGSGAGESQMGLPPPPASLRPRL 58
Query: 77 IFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQF 117
+FH QLAHGSPTG I GF+NV+ELY KIAE + PA EV F
Sbjct: 59 VFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEVMF 99
>sp|Q9Z0G0|GIPC1_MOUSE PDZ domain-containing protein GIPC1 OS=Mus musculus GN=Gipc1 PE=1
SV=1
Length = 333
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 32 MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKL-------------IF 78
MPL + KK L++N +S + G P + + ++ +F
Sbjct: 1 MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSAAGESQMGLPPPPAALRPRLVF 60
Query: 79 HCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQF 117
H QLAHGSPTG I GF+NV+ELY KIAE + PA EV F
Sbjct: 61 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEVMF 99
>sp|O14908|GIPC1_HUMAN PDZ domain-containing protein GIPC1 OS=Homo sapiens GN=GIPC1 PE=1
SV=2
Length = 333
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 77 IFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGAL 120
+FH QLAHGSPTG I GF+NV+ELY KIAE + P EV F L
Sbjct: 59 VFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEVMFCTL 102
>sp|Q8R5M0|GIPC3_MOUSE PDZ domain-containing protein GIPC3 OS=Mus musculus GN=Gipc3 PE=1
SV=1
Length = 297
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 72 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGAL 120
++P+L+F QLAHGSPTG I GF+NVRELY KIAE + E+ F L
Sbjct: 18 ARPRLVFRTQLAHGSPTGRIEGFTNVRELYAKIAEAFGIAPTEILFCTL 66
>sp|Q1JQD4|GIPC2_BOVIN PDZ domain-containing protein GIPC2 OS=Bos taurus GN=GIPC2 PE=2
SV=1
Length = 313
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 32 MPLFTRKPKKDDHLLDNNNV-GEHKSKIYNGTKSP-APVTEDSKPKLIFHCQLAHGSPTG 89
MPL R+ KK + + V GEH SP AP +L+FH QLAHGS TG
Sbjct: 1 MPLGLRRKKKFNTKETSRLVEGEHTDAAVRSLPSPPAPAR-----RLVFHTQLAHGSATG 55
Query: 90 LISGFSNVRELYQKIAECYEFPAEEVQFGAL 120
+ FS+++ELY KIA +E P E+ + L
Sbjct: 56 RVENFSSIQELYAKIAGVFEIPPSEILYCTL 86
>sp|Q8TF64|GIPC3_HUMAN PDZ domain-containing protein GIPC3 OS=Homo sapiens GN=GIPC3 PE=1
SV=1
Length = 312
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 31/45 (68%)
Query: 76 LIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGAL 120
L+F QLAHGSPTG I GF+NVRELY KIAE + E+ F L
Sbjct: 37 LVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEILFCTL 81
>sp|Q8TF65|GIPC2_HUMAN PDZ domain-containing protein GIPC2 OS=Homo sapiens GN=GIPC2 PE=1
SV=1
Length = 315
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 32 MPLFTR-----KPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGS 86
MPL R K K+ L++ G + + +++PA +L+FH QLAHGS
Sbjct: 1 MPLKLRGKKKAKSKETAGLVEGEPTGAGGGSL-SASRAPAR-------RLVFHAQLAHGS 52
Query: 87 PTGLISGFSNVRELYQKIAECYEFPAEEVQFGAL 120
TG + GFS+++ELY +IA +E E+ + L
Sbjct: 53 ATGRVEGFSSIQELYAQIAGAFEISPSEILYCTL 86
>sp|Q9Z2H7|GIPC2_MOUSE PDZ domain-containing protein GIPC2 OS=Mus musculus GN=Gipc2 PE=1
SV=1
Length = 314
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 52 GEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFP 111
GE S PAP KL+FH QLAHGS TG + FS++ ELY KIA +E
Sbjct: 23 GERSSGSQGVPGPPAPAR-----KLVFHAQLAHGSATGRVEDFSSISELYAKIAGVFEIA 77
Query: 112 AEEVQFGAL 120
E+ F L
Sbjct: 78 PSEILFCTL 86
>sp|Q498D9|GIPC2_RAT PDZ domain-containing protein GIPC2 OS=Rattus norvegicus GN=Gipc2
PE=2 SV=1
Length = 314
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 32 MPLFTRKPKKDDHLLDNNNV--GEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTG 89
MPL R KK + + GE PAP +L+FH QLAHGS TG
Sbjct: 1 MPLGLRGKKKAAKSKETARLVEGERSGGSQGVPGPPAPAR-----RLVFHAQLAHGSATG 55
Query: 90 LISGFSNVRELYQKIAECYEFPAEEVQFGAL 120
+ FS++ ELY KIA +E E+ F L
Sbjct: 56 RVEDFSSISELYAKIAGVFEIAPSEILFCTL 86
>sp|C5PBM5|MTNA_COCP7 Methylthioribose-1-phosphate isomerase OS=Coccidioides posadasii
(strain C735) GN=MRI1 PE=3 SV=1
Length = 390
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 47 DNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAE 106
DN ++GEH + + +P+ V EDSK ++ HC + G + +R L++K
Sbjct: 145 DNRSIGEHGAN-WIVANTPSGV-EDSKLCILTHCNTGSLATAGYGTALGIIRHLHEKSQL 202
Query: 107 CYEFPAEEVQF--GALLENY 124
C+ + E + GA L Y
Sbjct: 203 CHAYCTETRPYNQGARLTAY 222
>sp|O28255|HIS82_ARCFU Histidinol-phosphate aminotransferase 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=hisC2 PE=3 SV=1
Length = 342
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 58 IYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEF 110
++ G + V + +PKL+F C + +PT G S RE+ QK+AE E+
Sbjct: 127 VFEGYRVDPDVIAEERPKLVFLC--SPNNPT----GNSLSREIVQKVAESAEY 173
>sp|Q8YGG7|GLYA_BRUME Serine hydroxymethyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glyA PE=3 SV=2
Length = 438
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 40 KKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRE 99
+KDDHLLD + V A + ++KPKLI LA G+ I + RE
Sbjct: 160 RKDDHLLDMDEV--------------ARLARENKPKLI----LAGGTAYSRIWDWKRFRE 201
Query: 100 LYQKIAEC 107
+ ++ C
Sbjct: 202 IADEVGAC 209
>sp|B3P3W1|SPNE_DROER Probable ATP-dependent RNA helicase spindle-E OS=Drosophila erecta
GN=spn-E PE=3 SV=1
Length = 1432
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 74 PKLIFHCQLAHGSPTGLISGFSN----VRELYQKIAEC 107
P +F C+LAH P+ ++SG + +L + +A+C
Sbjct: 1004 PPRVFECRLAHVQPSSVVSGNNRWPTAANDLLKSVAKC 1041
>sp|A6NI28|RHG42_HUMAN Rho GTPase-activating protein 42 OS=Homo sapiens GN=ARHGAP42 PE=1
SV=3
Length = 874
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 50 NVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGS----PTGLISGFSNVRELYQKIA 105
+V K++++ SP PV+ + K ++ C+ H P G I FSNV Y +
Sbjct: 797 SVVAAKAQLFENVGSPKPVSSGRQAKAMYSCKAEHSHELSFPQGAI--FSNV---YPSVE 851
Query: 106 ECYEFPAEEVQFGALLENYT 125
+ E + G + ENY
Sbjct: 852 PGWLKATYEGKTGLVPENYV 871
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,580,397
Number of Sequences: 539616
Number of extensions: 2120921
Number of successful extensions: 4351
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4340
Number of HSP's gapped (non-prelim): 26
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)