Query psy6382
Match_columns 125
No_of_seqs 75 out of 77
Neff 2.5
Searched_HMMs 29240
Date Sat Aug 17 01:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wx7_A Ubiquilin 3; ubiquitin- 76.2 10 0.00035 24.8 6.4 33 85-117 27-59 (106)
2 3dbh_I NEDD8; cell cycle, acti 67.2 13 0.00043 22.8 4.9 41 75-115 12-53 (88)
3 3v6c_B Ubiquitin; structural g 67.0 10 0.00035 23.9 4.5 27 89-115 32-58 (91)
4 1ndd_A NEDD8, protein (ubiquit 65.3 6.6 0.00023 23.1 3.2 28 90-117 16-43 (76)
5 1v86_A DNA segment, CHR 7, way 65.0 15 0.00051 23.9 5.2 42 74-115 16-57 (95)
6 1j8c_A Ubiquitin-like protein 64.8 31 0.0011 23.7 7.2 30 88-117 45-74 (125)
7 2uyz_B Small ubiquitin-related 62.4 6.3 0.00022 24.0 2.8 28 90-117 19-46 (79)
8 1wh3_A 59 kDa 2'-5'-oligoadeny 61.4 11 0.00036 23.3 3.7 30 88-117 21-50 (87)
9 3a9j_A Ubiquitin; protein comp 60.0 9.5 0.00032 22.4 3.2 28 90-117 16-43 (76)
10 2dzi_A Ubiquitin-like protein 58.4 11 0.00039 22.5 3.4 28 89-116 22-49 (81)
11 3n3k_B Ubiquitin; hydrolase, p 56.4 10 0.00035 23.0 3.0 26 90-115 19-44 (85)
12 1yqb_A Ubiquilin 3; structural 56.2 14 0.00049 24.2 3.9 52 64-117 13-64 (100)
13 2bwf_A Ubiquitin-like protein 55.3 12 0.0004 22.3 3.1 28 90-117 19-46 (77)
14 2pjh_A Protein NPL4, nuclear p 54.6 8.6 0.00029 24.9 2.5 24 91-114 20-43 (80)
15 3kq0_A Alpha-1-acid glycoprote 54.3 5.2 0.00018 28.3 1.5 23 96-118 136-158 (192)
16 3umc_A Haloacid dehalogenase; 54.3 8.1 0.00028 26.3 2.5 23 96-118 174-196 (254)
17 3k9o_B Ubiquitin, UBB+1; E2-25 53.4 9.2 0.00031 24.1 2.5 27 90-116 17-43 (96)
18 1sif_A Ubiquitin; hydrophobic 51.3 9.1 0.00031 24.3 2.2 26 90-115 25-50 (88)
19 2kk8_A Uncharacterized protein 51.2 14 0.00049 23.5 3.2 27 89-115 25-51 (84)
20 1xn9_A 30S ribosomal protein S 51.1 23 0.0008 24.7 4.5 44 73-124 16-59 (101)
21 3mtn_B UBA80, ubcep1, ubiquiti 51.0 13 0.00044 22.4 2.8 27 90-116 19-45 (85)
22 1yx5_B Ubiquitin; proteasome, 50.8 15 0.00052 23.4 3.2 28 90-117 16-43 (98)
23 1uh6_A Ubiquitin-like 5; beta- 50.6 8.3 0.00029 26.6 2.1 27 90-116 44-70 (100)
24 1wyw_B Ubiquitin-like protein 50.4 14 0.00047 24.0 3.0 29 89-117 36-64 (97)
25 3ddh_A Putative haloacid dehal 49.4 11 0.00038 24.7 2.5 22 97-118 159-180 (234)
26 3phx_B Ubiquitin-like protein 49.2 18 0.00062 21.8 3.3 26 90-115 20-45 (79)
27 1wf9_A NPL4 family protein; be 48.5 9.9 0.00034 25.3 2.1 22 93-114 26-47 (107)
28 2faz_A Ubiquitin-like containi 48.5 18 0.0006 21.8 3.1 27 91-117 21-47 (78)
29 1ywx_A 30S ribosomal protein S 48.4 28 0.00094 24.5 4.5 44 73-124 16-59 (102)
30 2kvr_A Ubiquitin carboxyl-term 48.3 13 0.00045 26.4 2.9 31 90-120 61-91 (130)
31 2hj8_A Interferon-induced 17 k 48.1 15 0.0005 23.2 2.8 28 90-117 20-47 (88)
32 3umg_A Haloacid dehalogenase; 46.8 13 0.00044 24.9 2.5 22 97-118 171-192 (254)
33 3kbb_A Phosphorylated carbohyd 46.6 11 0.00036 25.4 2.0 22 97-118 142-163 (216)
34 2v94_A RPS24, 30S ribosomal pr 46.5 29 0.00099 24.5 4.4 44 73-124 24-68 (107)
35 3u26_A PF00702 domain protein; 46.5 13 0.00044 24.8 2.5 22 97-118 157-178 (234)
36 2kan_A Uncharacterized protein 46.3 17 0.00057 23.6 3.0 30 86-115 26-55 (94)
37 3qnm_A Haloacid dehalogenase-l 45.8 14 0.00047 24.6 2.5 22 97-118 164-185 (240)
38 1wy8_A NP95-like ring finger p 45.7 50 0.0017 20.2 5.6 27 91-117 26-52 (89)
39 2v4i_A Glutamate N-acetyltrans 45.2 6.9 0.00024 29.9 1.1 28 92-119 76-103 (173)
40 1wx8_A Riken cDNA 4931431F19; 45.1 15 0.00053 23.2 2.6 27 89-115 31-57 (96)
41 4dcc_A Putative haloacid dehal 44.8 14 0.00047 25.2 2.5 21 98-118 176-196 (229)
42 2pr7_A Haloacid dehalogenase/e 44.3 16 0.00054 22.5 2.5 22 97-118 76-97 (137)
43 2pib_A Phosphorylated carbohyd 44.2 14 0.00048 23.9 2.3 22 97-118 142-163 (216)
44 2kd0_A LRR repeats and ubiquit 43.9 17 0.0006 23.0 2.7 26 90-115 27-52 (85)
45 1v6e_A Cytoskeleton-associated 43.9 18 0.00063 23.3 2.8 27 88-114 22-48 (95)
46 3vay_A HAD-superfamily hydrola 43.9 15 0.00051 24.5 2.5 22 97-118 157-178 (230)
47 2om6_A Probable phosphoserine 43.7 15 0.00053 24.2 2.5 22 97-118 160-181 (235)
48 4ex6_A ALNB; modified rossman 43.6 14 0.00047 24.9 2.3 22 97-118 162-183 (237)
49 3s6j_A Hydrolase, haloacid deh 43.5 14 0.0005 24.4 2.3 22 97-118 149-170 (233)
50 4dwf_A HLA-B-associated transc 43.3 22 0.00075 22.1 3.1 27 89-115 20-46 (90)
51 1otf_A 4-oxalocrotonate tautom 43.3 12 0.00042 21.4 1.8 19 98-116 21-39 (62)
52 3mb2_A 4-oxalocrotonate tautom 43.1 14 0.00047 22.6 2.0 23 98-121 22-44 (72)
53 1v5o_A 1700011N24RIK protein; 42.8 16 0.00055 23.9 2.4 26 90-115 27-52 (102)
54 3m1y_A Phosphoserine phosphata 42.7 19 0.00067 23.8 2.9 24 95-118 141-164 (217)
55 2x4k_A 4-oxalocrotonate tautom 42.1 13 0.00046 21.0 1.8 20 97-116 23-42 (63)
56 3um9_A Haloacid dehalogenase, 41.9 17 0.00057 24.2 2.5 22 97-118 154-175 (230)
57 2l7r_A Ubiquitin-like protein 41.9 19 0.00065 23.1 2.7 28 90-117 33-60 (93)
58 3m21_A Probable tautomerase HP 41.7 13 0.00045 22.3 1.8 20 97-116 23-42 (67)
59 2i6x_A Hydrolase, haloacid deh 41.7 17 0.00058 24.1 2.5 21 98-118 153-173 (211)
60 3e58_A Putative beta-phosphogl 41.4 16 0.00056 23.5 2.3 21 98-118 148-168 (214)
61 4eew_A Large proline-rich prot 41.3 18 0.0006 22.4 2.4 27 89-115 32-58 (88)
62 3mc1_A Predicted phosphatase, 41.3 17 0.00059 24.1 2.5 23 96-118 143-165 (226)
63 3m9l_A Hydrolase, haloacid deh 40.7 17 0.00057 24.3 2.3 21 98-118 130-150 (205)
64 1gyx_A YDCE, B1461, hypothetic 40.7 16 0.00054 22.6 2.1 23 98-121 22-44 (76)
65 3dml_A Putative uncharacterize 40.6 16 0.00056 25.3 2.3 34 72-108 76-109 (116)
66 1vra_A Arginine biosynthesis b 40.6 8.8 0.0003 30.2 1.0 28 92-119 107-134 (208)
67 1fc3_A SPO0A; response regulat 40.5 3.8 0.00013 29.4 -1.0 19 97-115 47-65 (120)
68 4a3p_A Ubiquitin carboxyl-term 40.5 21 0.00072 26.7 3.1 26 88-113 143-168 (217)
69 2klc_A Ubiquilin-1; ubiquitin- 40.4 19 0.00066 23.6 2.5 29 89-117 39-67 (101)
70 1x1m_A Ubiquitin-like protein 40.3 20 0.00068 23.7 2.6 20 95-114 45-66 (107)
71 3abf_A 4-oxalocrotonate tautom 40.3 17 0.00059 21.0 2.1 19 98-116 22-40 (64)
72 3omt_A Uncharacterized protein 40.2 9.2 0.00031 22.5 0.9 18 99-116 51-68 (73)
73 2b0c_A Putative phosphatase; a 40.2 19 0.00064 23.7 2.5 21 98-118 151-171 (206)
74 3cnh_A Hydrolase family protei 39.7 19 0.00065 23.7 2.5 21 98-118 144-164 (200)
75 1y7y_A C.AHDI; helix-turn-heli 39.7 9.3 0.00032 22.0 0.8 18 99-116 56-73 (74)
76 3ed5_A YFNB; APC60080, bacillu 39.6 18 0.00062 24.0 2.4 22 97-118 160-182 (238)
77 3t76_A VANU, transcriptional r 39.4 8.7 0.0003 25.1 0.7 19 99-117 66-84 (88)
78 2ewt_A BLDD, putative DNA-bind 38.9 9.5 0.00033 22.0 0.8 18 99-116 53-70 (71)
79 4fbj_B NEDD8; effector-HOST ta 38.8 26 0.00089 22.1 2.9 26 90-115 16-41 (88)
80 3qxg_A Inorganic pyrophosphata 38.5 19 0.00064 24.6 2.3 21 98-118 169-189 (243)
81 3m63_B Ubiquitin domain-contai 38.5 21 0.0007 23.6 2.5 27 89-115 42-68 (101)
82 3umb_A Dehalogenase-like hydro 38.4 16 0.00055 24.4 1.9 22 97-118 157-178 (233)
83 2kdi_A Ubiquitin, vacuolar pro 38.4 21 0.0007 24.1 2.5 28 90-117 25-52 (114)
84 3dv9_A Beta-phosphoglucomutase 38.2 19 0.00065 24.2 2.3 21 98-118 168-188 (247)
85 2go7_A Hydrolase, haloacid deh 37.9 20 0.00069 22.9 2.3 21 98-118 143-163 (207)
86 2wf7_A Beta-PGM, beta-phosphog 37.9 20 0.00069 23.5 2.3 21 98-118 148-168 (221)
87 1ttn_A DC-UBP, dendritic cell- 37.8 42 0.0014 22.0 3.9 43 74-116 22-65 (106)
88 2ah5_A COG0546: predicted phos 37.7 19 0.00065 24.4 2.3 24 95-118 137-160 (210)
89 3l8h_A Putative haloacid dehal 37.3 19 0.00065 23.8 2.2 22 97-118 103-124 (179)
90 3bs3_A Putative DNA-binding pr 36.9 11 0.00038 21.9 0.9 19 99-117 53-71 (76)
91 2fdr_A Conserved hypothetical 36.9 21 0.00071 23.7 2.3 22 97-118 145-166 (229)
92 3smv_A S-(-)-azetidine-2-carbo 36.5 23 0.0008 23.3 2.5 22 97-118 154-178 (240)
93 3b1l_X E3 ubiquitin-protein li 42.6 7.5 0.00026 23.3 0.0 27 90-116 16-42 (76)
94 3ry0_A Putative tautomerase; o 36.2 18 0.00062 21.5 1.8 19 98-116 21-39 (65)
95 3ib6_A Uncharacterized protein 36.2 23 0.00077 24.2 2.5 22 97-118 99-120 (189)
96 4eek_A Beta-phosphoglucomutase 35.7 22 0.00075 24.5 2.3 21 98-118 171-191 (259)
97 3m20_A 4-oxalocrotonate tautom 35.4 23 0.0008 21.0 2.2 23 99-122 21-43 (62)
98 2xi8_A Putative transcription 35.3 9.7 0.00033 21.4 0.4 20 99-118 44-63 (66)
99 3b08_A Polyubiquitin-C, ubiqui 35.3 31 0.0011 22.8 3.0 27 89-115 15-41 (152)
100 3jyu_A Ubiquitin carboxyl-term 35.2 28 0.00097 26.3 3.1 30 88-117 155-185 (231)
101 1wxv_A BAG-family molecular ch 35.0 22 0.00076 22.3 2.1 21 95-115 32-52 (92)
102 2opa_A Probable tautomerase YW 34.9 20 0.00069 20.5 1.8 18 99-116 22-39 (61)
103 2ojr_A Ubiquitin; lanthide-bin 34.8 45 0.0015 22.0 3.7 29 89-117 50-78 (111)
104 1elu_A L-cysteine/L-cystine C- 34.7 25 0.00085 25.6 2.6 24 95-118 59-82 (390)
105 2hdo_A Phosphoglycolate phosph 34.6 24 0.00082 23.4 2.3 21 98-118 141-161 (209)
106 3sd7_A Putative phosphatase; s 34.3 26 0.00087 23.8 2.5 23 96-118 167-190 (240)
107 2hoq_A Putative HAD-hydrolase 34.2 25 0.00087 24.0 2.5 21 98-118 153-173 (241)
108 4hcn_B Polyubiquitin, ubiquiti 34.0 30 0.001 22.2 2.7 27 89-115 37-63 (98)
109 3hdo_A Histidinol-phosphate am 33.9 24 0.00084 25.8 2.5 23 97-119 67-89 (360)
110 3p96_A Phosphoserine phosphata 33.6 25 0.00086 27.4 2.6 43 76-118 297-345 (415)
111 4g9b_A Beta-PGM, beta-phosphog 33.5 22 0.00074 25.1 2.1 22 97-118 151-172 (243)
112 2cjg_A L-lysine-epsilon aminot 33.3 30 0.001 27.0 3.0 37 81-119 87-126 (449)
113 3p1t_A Putative histidinol-pho 33.3 24 0.00082 25.3 2.3 24 96-119 52-75 (337)
114 3kzx_A HAD-superfamily hydrola 33.2 31 0.0011 23.1 2.7 21 98-118 162-183 (231)
115 3bj5_A Protein disulfide-isome 32.9 25 0.00084 24.3 2.2 27 93-122 46-72 (147)
116 3ly1_A Putative histidinol-pho 32.8 28 0.00095 25.2 2.6 24 96-119 52-75 (354)
117 2cu1_A Mitogen-activated prote 32.7 23 0.00078 25.6 2.1 22 96-119 29-50 (103)
118 3ftb_A Histidinol-phosphate am 32.4 29 0.00099 25.1 2.6 24 96-119 62-85 (361)
119 2ho4_A Haloacid dehalogenase-l 32.4 29 0.00098 23.8 2.5 22 97-118 181-202 (259)
120 3iru_A Phoshonoacetaldehyde hy 32.3 28 0.00096 23.8 2.4 22 97-118 170-192 (277)
121 1fg7_A Histidinol phosphate am 32.0 27 0.00093 25.9 2.5 23 97-119 60-82 (356)
122 4gib_A Beta-phosphoglucomutase 32.0 24 0.00081 24.9 2.0 22 97-118 172-193 (250)
123 1v5t_A 8430435I17RIK protein; 31.9 33 0.0011 21.8 2.6 26 90-115 23-48 (90)
124 3ez1_A Aminotransferase MOCR f 31.8 20 0.00069 27.0 1.7 22 97-118 72-93 (423)
125 3ej9_A Alpha-subunit of trans- 31.7 23 0.00079 22.2 1.8 23 98-121 22-44 (76)
126 3m62_B UV excision repair prot 31.6 25 0.00086 23.2 2.0 26 90-115 17-42 (106)
127 1wju_A NEDD8 ultimate buster-1 31.5 26 0.00089 24.1 2.1 26 91-116 36-61 (100)
128 1we7_A SF3A1 protein; structur 31.5 38 0.0013 22.5 2.9 26 90-115 51-76 (115)
129 1te2_A Putative phosphatase; s 31.2 30 0.001 22.6 2.3 21 98-118 153-173 (226)
130 2kzr_A Ubiquitin thioesterase 31.2 30 0.001 21.8 2.3 23 92-114 18-40 (86)
131 2x4d_A HLHPP, phospholysine ph 31.2 31 0.0011 23.5 2.5 23 96-118 191-213 (271)
132 3mlf_A Transcriptional regulat 31.0 20 0.00069 23.5 1.5 19 99-117 66-84 (111)
133 1zrn_A L-2-haloacid dehalogena 31.0 28 0.00097 23.3 2.2 22 97-118 153-174 (232)
134 2cx6_A Hypothetical protein YH 30.7 28 0.00096 23.0 2.1 21 92-112 9-29 (90)
135 3k1z_A Haloacid dehalogenase-l 30.7 31 0.001 24.4 2.5 22 97-118 163-184 (263)
136 1wgd_A Homocysteine-responsive 30.6 33 0.0011 21.6 2.4 23 93-115 28-52 (93)
137 1we6_A Splicing factor, putati 30.5 36 0.0012 22.4 2.7 26 90-115 46-72 (111)
138 3fiq_A OBP1, RCG36470, odorant 30.2 27 0.00092 24.1 2.0 46 74-119 96-150 (157)
139 2dzm_A FAS-associated factor 1 30.1 49 0.0017 22.4 3.3 40 75-114 9-48 (100)
140 3a9z_A Selenocysteine lyase; P 30.1 31 0.0011 25.9 2.5 22 97-118 63-84 (432)
141 3get_A Histidinol-phosphate am 29.9 31 0.0011 25.1 2.5 22 98-119 68-89 (365)
142 3gnj_A Thioredoxin domain prot 29.9 32 0.0011 20.5 2.1 34 72-108 76-109 (111)
143 3nas_A Beta-PGM, beta-phosphog 29.7 22 0.00076 23.8 1.5 20 99-118 150-169 (233)
144 1yv9_A Hydrolase, haloacid deh 29.7 33 0.0011 24.0 2.5 21 98-118 186-206 (264)
145 1yns_A E-1 enzyme; hydrolase f 29.6 29 0.00099 25.2 2.2 22 97-118 189-210 (261)
146 3d6k_A Putative aminotransfera 29.4 23 0.00078 27.0 1.7 22 97-118 78-99 (422)
147 2g80_A Protein UTR4; YEL038W, 29.4 29 0.00099 25.7 2.2 24 95-118 187-210 (253)
148 2es7_A Q8ZP25_salty, putative 29.3 39 0.0013 23.0 2.8 41 72-115 91-131 (142)
149 2c4n_A Protein NAGD; nucleotid 29.3 30 0.001 23.0 2.0 22 97-118 178-199 (250)
150 1wm3_A Ubiquitin-like protein 29.0 53 0.0018 20.1 3.1 29 90-118 17-45 (72)
151 1t0y_A Tubulin folding cofacto 28.9 41 0.0014 22.8 2.8 29 87-115 20-48 (122)
152 3bx6_A Alpha-1-acid glycoprote 28.9 22 0.00077 26.3 1.5 29 90-118 129-158 (192)
153 3cai_A Possible aminotransfera 28.9 31 0.0011 25.5 2.3 23 96-118 70-92 (406)
154 3u30_A Ubiquitin, linear DI-ub 28.8 49 0.0017 23.0 3.2 28 88-115 34-61 (172)
155 3d6j_A Putative haloacid dehal 28.8 35 0.0012 22.2 2.3 21 98-118 148-168 (225)
156 1lc5_A COBD, L-threonine-O-3-p 28.7 32 0.0011 25.2 2.4 23 97-119 61-83 (364)
157 1uel_A HHR23B, UV excision rep 28.6 48 0.0016 21.1 2.9 27 90-116 16-45 (95)
158 2no4_A (S)-2-haloacid dehaloge 28.5 33 0.0011 23.3 2.2 22 97-118 163-184 (240)
159 3euc_A Histidinol-phosphate am 28.4 42 0.0014 24.5 2.9 23 97-119 69-92 (367)
160 2pke_A Haloacid delahogenase-l 28.4 36 0.0012 23.4 2.5 21 98-118 165-185 (251)
161 3i28_A Epoxide hydrolase 2; ar 28.3 35 0.0012 25.4 2.5 21 98-118 163-183 (555)
162 3mf7_A CIS-3-chloroacrylic aci 28.3 51 0.0017 23.6 3.3 38 74-117 61-102 (149)
163 1oey_A P67-PHOX, neutrophil cy 28.0 28 0.00096 23.6 1.8 23 95-117 24-46 (83)
164 3vax_A Putative uncharacterize 27.9 37 0.0013 24.9 2.6 23 97-119 65-87 (400)
165 1x57_A Endothelial differentia 27.8 13 0.00043 22.9 -0.0 19 99-117 56-74 (91)
166 1zod_A DGD, 2,2-dialkylglycine 27.4 35 0.0012 25.8 2.4 22 97-118 87-108 (433)
167 3it4_A Arginine biosynthesis b 27.4 18 0.00062 28.2 0.8 28 92-119 94-126 (199)
168 2wyq_A HHR23A, UV excision rep 27.4 67 0.0023 19.3 3.3 29 89-117 20-51 (85)
169 1vjr_A 4-nitrophenylphosphatas 27.3 35 0.0012 23.9 2.3 23 96-118 196-218 (271)
170 1wgg_A Ubiquitin carboxyl-term 27.3 43 0.0015 21.8 2.6 25 90-114 23-47 (96)
171 2eel_A Cell death activator CI 27.1 53 0.0018 22.7 3.1 24 95-118 28-51 (91)
172 4hvk_A Probable cysteine desul 27.0 37 0.0013 24.3 2.4 23 97-119 45-67 (382)
173 2hcf_A Hydrolase, haloacid deh 26.9 41 0.0014 22.3 2.5 22 97-118 153-176 (234)
174 2fyf_A PSAT, phosphoserine ami 26.8 47 0.0016 24.9 3.0 24 97-120 80-104 (398)
175 1qz9_A Kynureninase; kynurenin 26.8 38 0.0013 25.1 2.4 24 95-118 71-94 (416)
176 2io1_B Small ubiquitin-related 26.8 49 0.0017 21.8 2.8 44 75-118 7-51 (94)
177 3g7q_A Valine-pyruvate aminotr 26.7 39 0.0013 25.0 2.5 23 97-119 77-105 (417)
178 3l5k_A Protein GS1, haloacid d 26.4 40 0.0014 23.0 2.4 22 97-118 173-196 (250)
179 1e5p_A Aphrodisin; lipocalin, 26.2 41 0.0014 22.3 2.3 44 75-118 91-143 (151)
180 2za4_B Barstar; protein-protei 26.2 33 0.0011 22.3 1.8 20 92-111 9-28 (90)
181 2r1j_L Repressor protein C2; p 26.1 9.2 0.00031 21.6 -0.8 18 99-116 48-65 (68)
182 2nyv_A Pgpase, PGP, phosphogly 26.1 39 0.0013 23.1 2.3 22 97-118 141-162 (222)
183 3fkd_A L-threonine-O-3-phospha 26.0 41 0.0014 24.4 2.5 22 98-119 53-74 (350)
184 3ppl_A Aspartate aminotransfer 25.8 29 0.00099 26.3 1.7 22 97-118 80-101 (427)
185 3a4r_A Nfatc2-interacting prot 25.6 1.3E+02 0.0044 18.9 5.1 45 74-118 6-52 (79)
186 1v2d_A Glutamine aminotransfer 25.6 40 0.0014 24.8 2.4 23 97-119 63-85 (381)
187 3epr_A Hydrolase, haloacid deh 25.6 43 0.0015 23.8 2.5 22 97-118 184-205 (264)
188 2io0_B Small ubiquitin-related 25.5 66 0.0023 21.2 3.2 29 90-118 21-49 (91)
189 1uu1_A Histidinol-phosphate am 25.5 40 0.0014 24.5 2.4 23 97-119 58-83 (335)
190 4euy_A Uncharacterized protein 25.5 42 0.0014 20.3 2.1 33 73-108 72-104 (105)
191 3e8m_A Acylneuraminate cytidyl 25.2 47 0.0016 21.7 2.5 24 95-118 78-101 (164)
192 2wm8_A MDP-1, magnesium-depend 25.1 41 0.0014 22.7 2.2 22 97-118 122-143 (187)
193 1s0a_A Adenosylmethionine-8-am 25.0 45 0.0015 25.3 2.6 23 97-119 88-110 (429)
194 2b67_A COG0778: nitroreductase 24.9 44 0.0015 23.0 2.4 37 83-124 148-184 (204)
195 3ffh_A Histidinol-phosphate am 24.9 42 0.0014 24.4 2.4 23 96-118 68-90 (363)
196 3nuq_A Protein SSM1, putative 24.8 49 0.0017 23.3 2.6 23 96-118 205-228 (282)
197 1eg5_A Aminotransferase; PLP-d 24.6 47 0.0016 24.0 2.5 22 97-118 46-67 (384)
198 3b08_A Polyubiquitin-C, ubiqui 24.6 71 0.0024 21.0 3.3 30 88-117 90-119 (152)
199 3pdw_A Uncharacterized hydrola 24.5 43 0.0015 23.6 2.3 21 98-118 186-206 (266)
200 2fpr_A Histidine biosynthesis 24.5 17 0.00059 24.9 0.2 21 98-118 119-139 (176)
201 2d07_B Ubiquitin-like protein 24.4 65 0.0022 21.0 3.0 45 74-118 16-61 (93)
202 3s8q_A R-M controller protein; 24.3 11 0.00036 22.7 -0.8 18 99-116 54-71 (82)
203 2gfh_A Haloacid dehalogenase-l 24.3 42 0.0014 24.0 2.2 22 97-118 178-199 (260)
204 2p9j_A Hypothetical protein AQ 24.1 51 0.0018 21.4 2.5 24 95-118 83-106 (162)
205 3kz3_A Repressor protein CI; f 24.1 27 0.00093 20.9 1.0 17 99-115 55-71 (80)
206 1qq5_A Protein (L-2-haloacid d 23.8 49 0.0017 22.9 2.5 22 97-118 149-170 (253)
207 1iug_A Putative aspartate amin 23.4 47 0.0016 23.7 2.3 22 97-118 36-57 (352)
208 1xrx_A SEQA protein; protein f 23.3 11 0.00037 24.3 -1.0 24 97-120 7-33 (50)
209 3lvm_A Cysteine desulfurase; s 23.3 45 0.0015 24.8 2.3 23 97-119 70-92 (423)
210 1lmb_3 Protein (lambda repress 23.2 24 0.00084 21.4 0.7 18 99-116 60-77 (92)
211 2hi0_A Putative phosphoglycola 23.2 43 0.0015 23.1 2.0 22 97-118 167-188 (240)
212 2o2x_A Hypothetical protein; s 23.2 42 0.0014 23.3 2.0 21 98-118 140-160 (218)
213 3plu_A Ubiquitin-like modifier 23.0 51 0.0017 22.7 2.4 27 90-116 37-63 (93)
214 3qq6_A HTH-type transcriptiona 22.9 12 0.0004 22.9 -0.9 18 99-116 54-71 (78)
215 1bj7_A D 2; allergen, lipocali 22.9 50 0.0017 22.1 2.3 23 96-118 126-148 (156)
216 3bem_A Putative NAD(P)H nitror 22.6 52 0.0018 23.2 2.4 37 83-124 160-196 (218)
217 2gmw_A D,D-heptose 1,7-bisphos 22.4 44 0.0015 23.3 2.0 21 98-118 134-154 (211)
218 3vdz_A Ubiquitin-40S ribosomal 22.4 75 0.0026 21.0 3.1 27 89-115 50-76 (111)
219 1xho_A Chorismate mutase; sout 22.4 59 0.002 24.6 2.8 28 94-121 50-77 (148)
220 3apq_A DNAJ homolog subfamily 22.3 1.1E+02 0.0039 21.1 4.1 41 72-115 168-208 (210)
221 3if2_A Aminotransferase; YP_26 22.3 49 0.0017 25.0 2.4 23 97-119 85-113 (444)
222 3sao_A Extracellular fatty aci 22.2 51 0.0018 22.3 2.3 24 96-119 123-146 (160)
223 4eb5_A Probable cysteine desul 22.2 51 0.0018 23.8 2.3 23 96-118 44-66 (382)
224 1dzk_A PIG OBP, odorant-bindin 22.0 55 0.0019 21.7 2.3 23 96-118 127-149 (157)
225 2z9v_A Aspartate aminotransfer 22.0 52 0.0018 24.1 2.4 22 97-118 44-65 (392)
226 3f9t_A TDC, L-tyrosine decarbo 22.0 63 0.0021 23.2 2.8 21 99-119 73-93 (397)
227 3qgm_A P-nitrophenyl phosphata 21.9 56 0.0019 22.9 2.5 23 96-118 188-210 (268)
228 2eo5_A 419AA long hypothetical 21.7 48 0.0016 25.2 2.2 23 97-119 88-111 (419)
229 2zyj_A Alpha-aminodipate amino 21.7 52 0.0018 24.4 2.4 22 97-118 76-97 (397)
230 2kjr_A CG11242; UBL, ubiquitin 21.6 63 0.0022 21.3 2.6 28 87-114 30-57 (95)
231 3rt3_B Ubiquitin-like protein 21.6 62 0.0021 22.0 2.6 26 90-115 97-122 (159)
232 4b6w_A Tubulin-specific chaper 21.6 51 0.0017 21.3 2.0 26 89-114 19-44 (86)
233 1oaz_A Thioredoxin 1; immune s 21.5 67 0.0023 20.6 2.6 33 72-107 89-121 (123)
234 3c6v_A Probable tautomerase/de 21.5 53 0.0018 23.8 2.3 24 97-120 100-127 (161)
235 2ofy_A Putative XRE-family tra 21.5 13 0.00045 22.4 -0.8 18 99-116 58-75 (86)
236 2k9s_A Arabinose operon regula 21.3 30 0.001 21.9 0.9 23 92-114 79-101 (107)
237 3ei9_A LL-diaminopimelate amin 21.3 50 0.0017 24.9 2.2 23 97-119 100-126 (432)
238 2kj6_A Tubulin folding cofacto 21.1 72 0.0025 21.2 2.8 28 87-114 29-56 (97)
239 3ec3_A Protein disulfide-isome 21.0 28 0.00097 25.3 0.8 27 93-123 151-177 (250)
240 1l7m_A Phosphoserine phosphata 21.0 59 0.002 21.0 2.3 21 98-118 145-165 (211)
241 2g1d_A 30S ribosomal protein S 20.9 55 0.0019 22.6 2.2 44 73-124 16-60 (98)
242 2k9q_A Uncharacterized protein 20.8 14 0.00047 22.0 -0.8 19 99-117 45-63 (77)
243 1dbf_A Protein (chorismate mut 20.8 67 0.0023 23.6 2.8 27 95-121 22-48 (127)
244 3b7h_A Prophage LP1 protein 11 20.8 13 0.00046 21.6 -0.9 18 99-116 51-68 (78)
245 2b5a_A C.BCLI; helix-turn-heli 20.6 14 0.00047 21.5 -0.8 18 99-116 53-70 (77)
246 3lsg_A Two-component response 20.6 32 0.0011 21.6 0.9 23 92-114 78-100 (103)
247 2lxa_A Ubiquitin-like protein 20.6 70 0.0024 20.8 2.6 23 93-115 22-45 (87)
248 2wiu_B HTH-type transcriptiona 20.5 24 0.00081 21.1 0.2 18 99-116 55-72 (88)
249 3die_A Thioredoxin, TRX; elect 20.5 64 0.0022 18.9 2.2 32 73-107 74-105 (106)
250 2c0r_A PSAT, phosphoserine ami 20.4 64 0.0022 23.5 2.6 23 97-119 51-74 (362)
251 2hsz_A Novel predicted phospha 20.3 59 0.002 22.6 2.3 21 98-118 173-193 (243)
252 1svv_A Threonine aldolase; str 20.3 71 0.0024 22.7 2.7 22 97-118 51-72 (359)
253 1kmj_A Selenocysteine lyase; p 20.2 65 0.0022 23.4 2.6 24 96-119 68-92 (406)
254 2hlv_A Odorant-binding protein 20.2 62 0.0021 21.7 2.3 22 96-117 128-149 (160)
255 4dbg_A Ranbp-type and C3HC4-ty 20.1 69 0.0024 22.2 2.6 28 88-115 40-67 (105)
256 3lfp_A CSP231I C protein; tran 20.1 27 0.00092 21.8 0.4 18 99-116 48-65 (98)
No 1
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.23 E-value=10 Score=24.85 Aligned_cols=33 Identities=6% Similarity=0.215 Sum_probs=25.8
Q ss_pred CCCceeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 85 GSPTGLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 85 GSptg~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
|.-+=.|+.-.+|.+|-++|++..+|+++++-+
T Consensus 27 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 59 (106)
T 1wx7_A 27 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 59 (106)
T ss_dssp CEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 333445677789999999999999998887543
No 2
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=67.18 E-value=13 Score=22.79 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=28.7
Q ss_pred ceEEeeecccCCC-ceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 75 KLIFHCQLAHGSP-TGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 75 ~LvFh~QLAHGSp-tg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.+........|.. +=.|+.-.+|.+|-++|++..++|+++.
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 53 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 53 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHE
Confidence 3444444333433 3357788899999999999999998754
No 3
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=67.00 E-value=10 Score=23.95 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=23.5
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|-++|++.+++|+++.
T Consensus 32 l~v~~~~TV~~LK~~I~~~~gip~~~q 58 (91)
T 3v6c_B 32 LEVEPSDTIENVKAKIQDKEGIPPDQQ 58 (91)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EEECCCCCHHHHHHHHHhhhCCChhhE
Confidence 357788999999999999999998764
No 4
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=65.29 E-value=6.6 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=23.6
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-.+|.+|-++|++..++|++++-+
T Consensus 16 ~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 1ndd_A 16 DIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 4566789999999999999999887644
No 5
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.04 E-value=15 Score=23.85 Aligned_cols=42 Identities=17% Similarity=-0.011 Sum_probs=28.3
Q ss_pred CceEEeeecccCCCceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 74 PKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 74 p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
..+.+.....-..-+=.|+.-.+|.+|-++|++..+||+++.
T Consensus 16 ~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~Q 57 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQ 57 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTC
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe
Confidence 345444442111123456777899999999999999988763
No 6
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.83 E-value=31 Score=23.72 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=24.8
Q ss_pred ceeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
+=.|+.-.+|.+|-++|++..+|+++++-+
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 74 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQLVL 74 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceEEE
Confidence 346777789999999999999999887543
No 7
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=62.40 E-value=6.3 Score=23.96 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=24.2
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-++|.+|.++|++..++|++++-|
T Consensus 19 ~v~~~~tv~~lk~~i~~~~gi~~~~qrL 46 (79)
T 2uyz_B 19 KVKMTTHLKKLKESYCQRQGVPMNSLRF 46 (79)
T ss_dssp EEETTSCTHHHHHHHHHHHTCCGGGEEE
T ss_pred EECCCChHHHHHHHHHHHHCCCcccEEE
Confidence 4667789999999999999999988765
No 8
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.41 E-value=11 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=25.0
Q ss_pred ceeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
+=.|+.-.+|.+|-++|++..++|+++.-+
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL 50 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQL 50 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEEE
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEEE
Confidence 345677789999999999999999987644
No 9
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=60.02 E-value=9.5 Score=22.38 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=23.2
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-.+|.+|-++|++.+++|++++-+
T Consensus 16 ~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 3a9j_A 16 EVEPSDTIENVKAKIQDKEGIPPDQQRL 43 (76)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EECCCCcHHHHHHHHHHHHCcCHHHeEE
Confidence 4566689999999999999999887643
No 10
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.43 E-value=11 Score=22.53 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=23.7
Q ss_pred eeecCccchHHHHHhhhhhhccCCCceE
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
=.|+.-.+|.+|-++|++..++|++++-
T Consensus 22 ~~v~~~~tV~~LK~~i~~~~~i~~~~qr 49 (81)
T 2dzi_A 22 LQVPEDELVSTLKQLVSEKLNVPVRQQR 49 (81)
T ss_dssp EEECSSCBHHHHHHHHHHHTCCCTTTCE
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHEE
Confidence 4567778999999999999999887653
No 11
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=56.36 E-value=10 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.8
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-++|.+|-++|++.+++|+++.
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~ip~~~q 44 (85)
T 3n3k_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQ 44 (85)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCCCHHHE
Confidence 56677899999999999999999865
No 12
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=56.18 E-value=14 Score=24.23 Aligned_cols=52 Identities=8% Similarity=0.152 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCceEEeeecccCCCceeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 64 SPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 64 gl~p~~~~~~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
|+.++..+..-++.+-+. -|.-+=.|+.-.+|.+|-++|++..++|++++-+
T Consensus 13 ~~~~~~~~~~m~I~Vk~~--~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 64 (100)
T 1yqb_A 13 GLVPRGSPHLIKVTVKTP--KDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 64 (100)
T ss_dssp TTCCSCCTTEEEEEEECS--SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred cCCCCCCCCeEEEEEEcC--CCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 455544443334444433 2333445677789999999999999999887543
No 13
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=55.31 E-value=12 Score=22.29 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=23.4
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-.+|.+|-++|++..++|++++-+
T Consensus 19 ~v~~~~tV~~LK~~i~~~~~i~~~~qrL 46 (77)
T 2bwf_A 19 NVAPESTVLQFKEAINKANGIPVANQRL 46 (77)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EECCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 4566689999999999999999887543
No 14
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=54.57 E-value=8.6 Score=24.87 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=19.5
Q ss_pred ecCccchHHHHHhhhhhhccCCCc
Q psy6382 91 ISGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 91 I~gFsnVkELY~kIAe~f~i~~~e 114 (125)
++.=+++.+|+++|++.++++.+.
T Consensus 20 v~~~~t~~~L~~~I~~~~~i~~~~ 43 (80)
T 2pjh_A 20 ATKRETAATFLKKVAKEFGFQNNG 43 (80)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCTTT
T ss_pred cCCcChHHHHHHHHHHHcCCCCCc
Confidence 345578999999999999997544
No 15
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=54.30 E-value=5.2 Score=28.28 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.7
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|-|++.|++.||+.++|+|-
T Consensus 136 e~le~F~~~a~~~G~~~~~ii~~ 158 (192)
T 3kq0_A 136 EQLGEFYEALDCLRIPKSDVVYT 158 (192)
T ss_dssp TTTHHHHHHHHHHTCCGGGCEEC
T ss_pred HHHHHHHHHHHHCCCCHHHEEEc
Confidence 46788999999999999999984
No 16
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=54.27 E-value=8.1 Score=26.27 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.4
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
.-.+.|+.+++.++++++|++|+
T Consensus 174 p~~~~~~~~~~~lgi~~~~~~~i 196 (254)
T 3umc_A 174 PDPQVYLGACRLLDLPPQEVMLC 196 (254)
T ss_dssp TSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCHHHHHHHHHHcCCChHHEEEE
Confidence 34689999999999999999986
No 17
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=53.45 E-value=9.2 Score=24.05 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=23.1
Q ss_pred eecCccchHHHHHhhhhhhccCCCceE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
.|+.-.+|.+|-++|++.+++|++++-
T Consensus 17 ~v~~~~TV~~LK~~i~~~~gip~~~qr 43 (96)
T 3k9o_B 17 EVEPSDTIENVKAKIQDKEGIPPDQQR 43 (96)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEE
T ss_pred EECCCCCHHHHHHHHHhhhCCChhHEE
Confidence 466778999999999999999988753
No 18
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=51.32 E-value=9.1 Score=24.28 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.0
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|-++|++..++|++++
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~q 50 (88)
T 1sif_A 25 EMEPSDTIENLKAKIQDKEGIPPDQQ 50 (88)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGC
T ss_pred EECCCChHHHHHHHHHHHHCcChhhE
Confidence 35566899999999999999998765
No 19
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=51.23 E-value=14 Score=23.52 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=23.2
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|-++|++..++|+++.
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~Q 51 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQ 51 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHE
Confidence 356777899999999999999998874
No 20
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=51.07 E-value=23 Score=24.71 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=33.8
Q ss_pred CCceEEeeecccCCCceeecCccchHHHHHhhhhhhccCCCceEEEEccCCC
Q psy6382 73 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGALLENY 124 (125)
Q Consensus 73 ~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f~i~~~eIlFCTLNT~~ 124 (125)
|-+++|- +-||++|= +-.|+=.+||..|+.+++.|.-=.+.|+|
T Consensus 16 Rke~~~~--v~H~~~tp------sk~eirekLAk~~~~~~~~Vvv~~~~t~f 59 (101)
T 1xn9_A 16 RRELDFI--VKYEGSTP------SRNDVRNKLAAMLNAPLELLVIQRIKTEY 59 (101)
T ss_dssp EEEEEEE--EECSSSCC------CHHHHHHHHHHHTTCCTTTEEEEEEEECS
T ss_pred cEEEEEE--EEcCCCCC------CHHHHHHHHHHHHCCCCCEEEEEeeEecC
Confidence 4456664 45777663 45789999999999999988877888877
No 21
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=50.95 E-value=13 Score=22.43 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=22.7
Q ss_pred eecCccchHHHHHhhhhhhccCCCceE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
.|+.-.+|.+|-++|++..++|+++.-
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~i~~~~qr 45 (85)
T 3mtn_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQR 45 (85)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGCE
T ss_pred EECCCCCHHHHHHHHHHHHCcChHHEE
Confidence 466678999999999999999987653
No 22
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=50.83 E-value=15 Score=23.43 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=23.3
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-++|.+|-++|++..++|++++-+
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gi~~~~qrL 43 (98)
T 1yx5_B 16 EVEPSDTIENVKAKIQDKEGIPPDQQRL 43 (98)
T ss_dssp ECCTTCBHHHHHHHHHHHTCCCGGGEEE
T ss_pred EECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 4566789999999999999999887543
No 23
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.61 E-value=8.3 Score=26.64 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=23.6
Q ss_pred eecCccchHHHHHhhhhhhccCCCceE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
.|+.=.+|.+|.++|++..+||++++.
T Consensus 44 ev~p~dTV~~lK~~Ia~k~Gip~~qQr 70 (100)
T 1uh6_A 44 KCNTDDTIGDLKKLIAAQTGTRWNKIV 70 (100)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGCE
T ss_pred EeCCCCcHHHHHHHHHHHhCCCHHHEE
Confidence 466778999999999999999998864
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=50.41 E-value=14 Score=23.98 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=25.0
Q ss_pred eeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
=.|+.-++|.+|.++|++..+||++++-|
T Consensus 36 l~v~~~~tv~~lK~~i~~~~gip~~~qrL 64 (97)
T 1wyw_B 36 FKVKMTTHLKKLKESYCQRQGVPMNSLRF 64 (97)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCGGGEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEEE
Confidence 45777899999999999999999988755
No 25
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=49.42 E-value=11 Score=24.72 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=20.1
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+++++.++++++|++|.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~i 180 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMV 180 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHhCCCcceEEEE
Confidence 5689999999999999999986
No 26
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=49.24 E-value=18 Score=21.83 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.8
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|-++|++..++|+++.
T Consensus 20 ~v~~~~tV~~lK~~i~~~~gip~~~q 45 (79)
T 3phx_B 20 EVRLTQTVAHLKQQVSGLEGVQDDLF 45 (79)
T ss_dssp EECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EECCcChHHHHHHHHHhhcCCCHHHE
Confidence 46677899999999999999998865
No 27
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=48.52 E-value=9.9 Score=25.33 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.4
Q ss_pred CccchHHHHHhhhhhhccCCCc
Q psy6382 93 GFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 93 gFsnVkELY~kIAe~f~i~~~e 114 (125)
.=.+|.+|.++|++.++||+++
T Consensus 26 ~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 26 PHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp TTSBHHHHHHHHHHHSCCCTTT
T ss_pred CCCcHHHHHHHHHHHhCcCccc
Confidence 4479999999999999998776
No 28
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=48.47 E-value=18 Score=21.75 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.4
Q ss_pred ecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 91 ISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 91 I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
|+.-.+|.+|-++|++..++|+++.-.
T Consensus 21 v~~~~tv~~lK~~i~~~~gip~~~qrL 47 (78)
T 2faz_A 21 LSRLTKVEELRRKIQELFHVEPGLQRL 47 (78)
T ss_dssp ECTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEEE
Confidence 677889999999999999999887543
No 29
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=48.35 E-value=28 Score=24.48 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=33.4
Q ss_pred CCceEEeeecccCCCceeecCccchHHHHHhhhhhhccCCCceEEEEccCCC
Q psy6382 73 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGALLENY 124 (125)
Q Consensus 73 ~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f~i~~~eIlFCTLNT~~ 124 (125)
|-+++|- +-||++|= +-.|+=.++|..|+.+++.|.-=.+.|+|
T Consensus 16 Rke~~~~--v~H~~~tp------sk~eirekLAk~~~~~~d~Vvv~~~~T~f 59 (102)
T 1ywx_A 16 RREIKFT--VSFDAATP------SIKDVKMKLVAVLNANKQVLVVDTLDQIF 59 (102)
T ss_dssp EEEEEEE--EECSSCCC------CHHHHHHHHHHHHTSCSTTEEEEEEEECS
T ss_pred cEEEEEE--EEcCCCCC------CHHHHHHHHHHHHCCCCCEEEEEccEecC
Confidence 4456654 45777663 45788999999999999888877788876
No 30
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=48.31 E-value=13 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.376 Sum_probs=27.3
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEEEEc
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQFGAL 120 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlFCTL 120 (125)
+|..=+++.||++.||+.||+|++++-|-.+
T Consensus 61 rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 61 KVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred EEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 7777789999999999999999999877655
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=48.05 E-value=15 Score=23.21 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=23.6
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-.+|.+|-++|++..+||+++.-+
T Consensus 20 ~v~~~~TV~~LK~~I~~~~gip~~~qrL 47 (88)
T 2hj8_A 20 EVRLTQTVAHLKQQVSGLEGVQDDLFWL 47 (88)
T ss_dssp EEESSSBHHHHHHHHHHHTCSCTTTEEE
T ss_pred EECCCCcHHHHHHHHHHHhCCChhHEEE
Confidence 4667789999999999999999887543
No 32
>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}
Probab=46.78 E-value=13 Score=24.94 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.9
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|++|.
T Consensus 171 ~~~~~~~~~~~lgi~~~~~~~i 192 (254)
T 3umg_A 171 DPQAYLRTAQVLGLHPGEVMLA 192 (254)
T ss_dssp SHHHHHHHHHHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCChHHEEEE
Confidence 4679999999999999999986
No 33
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=46.57 E-value=11 Score=25.39 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++|+|++|.
T Consensus 142 ~p~~~~~a~~~lg~~p~e~l~V 163 (216)
T 3kbb_A 142 DPEIYLLVLERLNVVPEKVVVF 163 (216)
T ss_dssp STHHHHHHHHHHTCCGGGEEEE
T ss_pred cHHHHHHHHHhhCCCccceEEE
Confidence 4679999999999999999985
No 34
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=46.53 E-value=29 Score=24.50 Aligned_cols=44 Identities=16% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCceEEeeeccc-CCCceeecCccchHHHHHhhhhhhccCCCceEEEEccCCC
Q psy6382 73 KPKLIFHCQLAH-GSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGALLENY 124 (125)
Q Consensus 73 ~p~LvFh~QLAH-GSptg~I~gFsnVkELY~kIAe~f~i~~~eIlFCTLNT~~ 124 (125)
|-+++|- +-| |++| -+-.|+=.+||..|+.+++.|.-=.+.|+|
T Consensus 24 Rke~~~~--v~Hpg~~t------psk~eirekLA~~~~~~~d~Vvv~~~~T~f 68 (107)
T 2v94_A 24 RKEIYFE--IYHPGEPT------PSRKDVKGKLVAMLDLNPETTVIQYIRSYF 68 (107)
T ss_dssp EEEEEEE--EECTTSCC------CCHHHHHHHHHHHHTCCGGGEEEEEEECCT
T ss_pred cEEEEEE--EEeCCCCC------CCHHHHHHHHHHHHCCCCCEEEEEeeEecC
Confidence 4456664 457 7776 356789999999999999988877888887
No 35
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=46.46 E-value=13 Score=24.80 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=19.8
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~v 178 (234)
T 3u26_A 157 HPRIFELALKKAGVKGEEAVYV 178 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCchhEEEE
Confidence 4678999999999999999986
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=46.30 E-value=17 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=24.6
Q ss_pred CCceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 86 SPTGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 86 Sptg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.-+=.|+.-.+|.+|-++|++..++|+++.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q 55 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRM 55 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHE
Confidence 334456777899999999999999998875
No 37
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=45.77 E-value=14 Score=24.56 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=19.8
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 164 ~~~~~~~~~~~lgi~~~~~~~i 185 (240)
T 3qnm_A 164 RPEIFHFALSATQSELRESLMI 185 (240)
T ss_dssp SHHHHHHHHHHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCcccEEEE
Confidence 3588999999999999999986
No 38
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.68 E-value=50 Score=20.23 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=23.6
Q ss_pred ecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 91 ISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 91 I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
|+.-.+|.+|-++|++..++|+++.-+
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qrL 52 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQRL 52 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEEE
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEEE
Confidence 778899999999999999999887543
No 39
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* 2yep_A*
Probab=45.19 E-value=6.9 Score=29.89 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=26.1
Q ss_pred cCccchHHHHHhhhhhhccCCCceEEEE
Q psy6382 92 SGFSNVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~i~~~eIlFCT 119 (125)
+|+.+.++.-+..|+.++++++||+.|-
T Consensus 76 ~G~~da~~~~~~~A~~lg~~~~~Vlv~S 103 (173)
T 2v4i_A 76 EGEENAREVREAVARALGLPEGEMLIAS 103 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCchhEEEec
Confidence 5899999999999999999999999884
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.14 E-value=15 Score=23.21 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.2
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|-++|++..++++++.
T Consensus 31 ~~v~~~~TV~~LK~~I~~~~gip~~~q 57 (96)
T 1wx8_A 31 FFLAENSNVRRFKKQISKYLHCNADRL 57 (96)
T ss_dssp EEEETTCCHHHHHHHHHHHTCSCTTTB
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 456777899999999999999988764
No 41
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Probab=44.78 E-value=14 Score=25.23 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 176 ~~~~~~~~~~~g~~~~~~~~v 196 (229)
T 4dcc_A 176 PEIFKAVTEDAGIDPKETFFI 196 (229)
T ss_dssp HHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCCHHHeEEE
Confidence 488999999999999999985
No 42
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=44.33 E-value=16 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|..+.+.+++++++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~v 97 (137)
T 2pr7_A 76 EEAAFQAAADAIDLPMRDCVLV 97 (137)
T ss_dssp SHHHHHHHHHHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCcccEEEE
Confidence 4678999999999999999985
No 43
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=44.20 E-value=14 Score=23.90 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.4
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+++++.++++++|++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~i~i 163 (216)
T 2pib_A 142 DPEIYLLVLERLNVVPEKVVVF 163 (216)
T ss_dssp STHHHHHHHHHHTCCGGGEEEE
T ss_pred CcHHHHHHHHHcCCCCceEEEE
Confidence 3478999999999999999985
No 44
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=43.93 E-value=17 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=22.0
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|-++|++..++|+++.
T Consensus 27 ~v~~~~TV~~LK~~I~~~~gip~~~q 52 (85)
T 2kd0_A 27 SVSPDCTVKDLKSQLQPITNVLPRGQ 52 (85)
T ss_dssp EECTTSBHHHHHHHHHHHHCCCTTTC
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHE
Confidence 45666899999999999999988764
No 45
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.87 E-value=18 Score=23.28 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=23.5
Q ss_pred ceeecCccchHHHHHhhhhhhccCCCc
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~e 114 (125)
+-+|+.-.+|.+|-++|++..+||+++
T Consensus 22 ~~~v~~~~TV~~lK~ki~~~~gip~~~ 48 (95)
T 1v6e_A 22 EKRYSRSLTIAEFKCKLELVVGSPASC 48 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHTCSCTTT
T ss_pred EEEcCccCHHHHHHHHHHHHHCCCHHH
Confidence 446777789999999999999998876
No 46
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=43.85 E-value=15 Score=24.50 Aligned_cols=22 Identities=5% Similarity=-0.133 Sum_probs=20.0
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+++++.+++++++++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~v 178 (230)
T 3vay_A 157 DPAPFLEALRRAKVDASAAVHV 178 (230)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHhCCCchheEEE
Confidence 4689999999999999999986
No 47
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=43.73 E-value=15 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|++|.
T Consensus 160 ~~~~~~~~~~~lgi~~~~~~~i 181 (235)
T 2om6_A 160 RKEMFEKVLNSFEVKPEESLHI 181 (235)
T ss_dssp CHHHHHHHHHHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCccceEEE
Confidence 3689999999999999999986
No 48
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=43.60 E-value=14 Score=24.88 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|++|.
T Consensus 162 ~~~~~~~~~~~lg~~~~~~i~v 183 (237)
T 4ex6_A 162 HPDMALHVARGLGIPPERCVVI 183 (237)
T ss_dssp SSHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCHHHeEEE
Confidence 3479999999999999999985
No 49
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=43.47 E-value=14 Score=24.43 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 149 ~~~~~~~~~~~l~~~~~~~i~i 170 (233)
T 3s6j_A 149 DPDLFLAAAKKIGAPIDECLVI 170 (233)
T ss_dssp STHHHHHHHHHTTCCGGGEEEE
T ss_pred ChHHHHHHHHHhCCCHHHEEEE
Confidence 3578999999999999999985
No 50
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=43.34 E-value=22 Score=22.06 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.3
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|-++|++.+++++++.
T Consensus 20 ~~v~~~~tV~~lK~~i~~~~gip~~~q 46 (90)
T 4dwf_A 20 FIVGAQMNVKEFKEHIAASVSIPSEKQ 46 (90)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 356778899999999999999998864
No 51
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=43.34 E-value=12 Score=21.41 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=12.8
Q ss_pred HHHHHhhhhhhccCCCceE
Q psy6382 98 RELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIl 116 (125)
+++++.+.+.+++|+++|.
T Consensus 21 ~~i~~~l~~~lg~p~~~v~ 39 (62)
T 1otf_A 21 RQVSEAMANSLDAPLERVR 39 (62)
T ss_dssp HHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHhCcCcccEE
Confidence 3445555588999988753
No 52
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=43.12 E-value=14 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=14.4
Q ss_pred HHHHHhhhhhhccCCCceEEEEcc
Q psy6382 98 RELYQKIAECYEFPAEEVQFGALL 121 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFCTLN 121 (125)
+++++.+++++++|+++| |..++
T Consensus 22 ~~it~~l~~~lg~p~~~v-~V~i~ 44 (72)
T 3mb2_A 22 RALSAAAAAAFDVPLAEV-RLIIQ 44 (72)
T ss_dssp HHHHHHHHHHHTCCGGGE-EEEEE
T ss_pred HHHHHHHHHHhCCCcccE-EEEEE
Confidence 344555558889998765 44443
No 53
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.84 E-value=16 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.7
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|-++|++..+|++++.
T Consensus 27 ~v~~~~TV~~LK~~I~~~~gip~~~q 52 (102)
T 1v5o_A 27 QVNPDFELSNFRVLCELESGVPAEEA 52 (102)
T ss_dssp EECTTCBHHHHHHHHHHHTCCCGGGB
T ss_pred EcCCCCCHHHHHHHHHHHHCcChHHe
Confidence 36777899999999999999988774
No 54
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=42.66 E-value=19 Score=23.79 Aligned_cols=24 Identities=4% Similarity=0.009 Sum_probs=21.0
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
.+-.+.|+.+++.+++++++++|.
T Consensus 141 k~k~~~~~~~~~~~g~~~~~~i~v 164 (217)
T 3m1y_A 141 HSKGEMLLVLQRLLNISKTNTLVV 164 (217)
T ss_dssp THHHHHHHHHHHHHTCCSTTEEEE
T ss_pred CChHHHHHHHHHHcCCCHhHEEEE
Confidence 345789999999999999999986
No 55
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=42.14 E-value=13 Score=20.98 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=15.1
Q ss_pred hHHHHHhhhhhhccCCCceE
Q psy6382 97 VRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIl 116 (125)
.+++++.+++++++|++.|.
T Consensus 23 ~~~l~~~l~~~lg~p~~~v~ 42 (63)
T 2x4k_A 23 VSEVTDAVEKTTGANRQAIH 42 (63)
T ss_dssp HHHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHhCcCcccEE
Confidence 45677777889999987654
No 56
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=41.93 E-value=17 Score=24.16 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=19.8
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~i 175 (230)
T 3um9_A 154 HQKVYELAMDTLHLGESEILFV 175 (230)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEE
T ss_pred ChHHHHHHHHHhCCCcccEEEE
Confidence 3689999999999999999986
No 57
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=41.88 E-value=19 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=23.4
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-.+|.+|-++|++..++|+++.-+
T Consensus 33 ~v~~~~TV~~LK~~I~~~~gip~~~qrL 60 (93)
T 2l7r_A 33 EVTGQETVAQIKAHVASLEGIAPEDQVV 60 (93)
T ss_dssp ECCSSCBHHHHHHHHHHHHTCCGGGCEE
T ss_pred EeCCCCcHHHHHHHHHHHhCcChhHEEE
Confidence 4667789999999999999999886543
No 58
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=41.73 E-value=13 Score=22.33 Aligned_cols=20 Identities=0% Similarity=0.057 Sum_probs=13.7
Q ss_pred hHHHHHhhhhhhccCCCceE
Q psy6382 97 VRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIl 116 (125)
++++++.+++.+++|+++|.
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~ 42 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIV 42 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHHCcCcccEE
Confidence 34555556688899988764
No 59
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=41.71 E-value=17 Score=24.06 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=19.2
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i 173 (211)
T 2i6x_A 153 EDIFLEMIADSGMKPEETLFI 173 (211)
T ss_dssp HHHHHHHHHHHCCCGGGEEEE
T ss_pred HHHHHHHHHHhCCChHHeEEe
Confidence 579999999999999999985
No 60
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=41.37 E-value=16 Score=23.52 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~i 168 (214)
T 3e58_A 148 PEIYLTALKQLNVQASRALII 168 (214)
T ss_dssp SHHHHHHHHHHTCCGGGEEEE
T ss_pred hHHHHHHHHHcCCChHHeEEE
Confidence 468999999999999999885
No 61
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=41.33 E-value=18 Score=22.43 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.5
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|=++|++.+++|+++.
T Consensus 32 ~~v~~~~tV~~lK~~i~~~~gip~~~q 58 (88)
T 4eew_A 32 FIVGAQMNVKEFKEHIAASVSIPSEKQ 58 (88)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 357788899999999999999998864
No 62
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=41.28 E-value=17 Score=24.11 Aligned_cols=23 Identities=4% Similarity=0.114 Sum_probs=20.4
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
+-.+.|+++++.++++++|++|.
T Consensus 143 p~~~~~~~~~~~lgi~~~~~i~i 165 (226)
T 3mc1_A 143 TKEDVIRYAMESLNIKSDDAIMI 165 (226)
T ss_dssp SHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCHHHHHHHHHHhCcCcccEEEE
Confidence 45689999999999999999985
No 63
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=40.73 E-value=17 Score=24.26 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=19.0
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 130 ~~~~~~~~~~~g~~~~~~i~i 150 (205)
T 3m9l_A 130 PGGLLKLAEAWDVSPSRMVMV 150 (205)
T ss_dssp SHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCCHHHEEEE
Confidence 468999999999999999985
No 64
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=40.66 E-value=16 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=15.6
Q ss_pred HHHHHhhhhhhccCCCceEEEEcc
Q psy6382 98 RELYQKIAECYEFPAEEVQFGALL 121 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFCTLN 121 (125)
+++.+.+.+.+++++++| |..+.
T Consensus 22 ~~l~~~l~~~lgip~~~v-~V~i~ 44 (76)
T 1gyx_A 22 ADITDVIIRHLNSKDSSI-SIALQ 44 (76)
T ss_dssp HHHHHHHHHHHTCCGGGC-EEEEE
T ss_pred HHHHHHHHHHhCcCCceE-EEEEE
Confidence 344555568899999987 55544
No 65
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=40.63 E-value=16 Score=25.25 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCCceEEeeecccCCCceeecCccchHHHHHhhhhhh
Q psy6382 72 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 108 (125)
Q Consensus 72 ~~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f 108 (125)
..|.|||-.+ |-..+||.||-+-.++.+.+.+..
T Consensus 76 g~PT~i~f~~---G~ev~Ri~G~~~~~~f~~~L~~~l 109 (116)
T 3dml_A 76 FTPTFVLMAG---DVESGRLEGYPGEDFFWPMLARLI 109 (116)
T ss_dssp SSSEEEEEET---TEEEEEEECCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEC---CEEEeeecCCCCHHHHHHHHHHHH
Confidence 4688999886 999999999999999988876543
No 66
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=40.59 E-value=8.8 Score=30.23 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=26.1
Q ss_pred cCccchHHHHHhhhhhhccCCCceEEEE
Q psy6382 92 SGFSNVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~i~~~eIlFCT 119 (125)
+|+.+.++.-+..|+.++++++||+.|-
T Consensus 107 ~G~~da~~~a~~~A~~lgi~~~~VlvaS 134 (208)
T 1vra_A 107 RGLDDAYTMRAVGAETFHIPEHYVAVTS 134 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCChhHEEEeC
Confidence 4899999999999999999999999884
No 67
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=40.53 E-value=3.8 Score=29.43 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=15.8
Q ss_pred hHHHHHhhhhhhccCCCce
Q psy6382 97 VRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eI 115 (125)
-|+||..||+.|+.+++.|
T Consensus 47 tK~LYp~IA~k~~TT~s~V 65 (120)
T 1fc3_A 47 TKVLYPDIAKKYNTTASRV 65 (120)
T ss_dssp TTTHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHH
Confidence 3679999999999887654
No 68
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=40.48 E-value=21 Score=26.70 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=24.0
Q ss_pred ceeecCccchHHHHHhhhhhhccCCC
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAE 113 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~ 113 (125)
+..++-..++++|++.+.+.|+|+++
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~ 168 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDE 168 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTT
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCC
Confidence 47789999999999999999999986
No 69
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=40.38 E-value=19 Score=23.57 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=23.9
Q ss_pred eeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
=.|+.-.+|.+|-++|++..++|++++-.
T Consensus 39 l~v~~~~TV~~LK~~I~~~~gip~~~qrL 67 (101)
T 2klc_A 39 FAVPENSSVQQFKEEISKRFKSHTDQLVL 67 (101)
T ss_dssp EEECSCCCHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEECCCCCHHHHHHHHHHHHCcChhhEEE
Confidence 35666789999999999999999887543
No 70
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.34 E-value=20 Score=23.67 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=19.0
Q ss_pred cchHHHHHhhhhhh--ccCCCc
Q psy6382 95 SNVRELYQKIAECY--EFPAEE 114 (125)
Q Consensus 95 snVkELY~kIAe~f--~i~~~e 114 (125)
.+|.+|-++|++.. ++++++
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~ 66 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPE 66 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSS
T ss_pred CCHHHHHHHHHHHhccCCChhh
Confidence 78999999999999 999988
No 71
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=40.31 E-value=17 Score=20.97 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=12.9
Q ss_pred HHHHHhhhhhhccCCCceE
Q psy6382 98 RELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIl 116 (125)
++|.+.+++..++|++.|+
T Consensus 22 ~~lt~~l~~~lg~~~~~v~ 40 (64)
T 3abf_A 22 RRLTEMASRLLGEPYEEVR 40 (64)
T ss_dssp HHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHhCCCcccEE
Confidence 4455555678889888765
No 72
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=40.21 E-value=9.2 Score=22.52 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 51 ~~l~~ia~~l~v~~~~l~ 68 (73)
T 3omt_A 51 ETLFDIAEALNVDVRELI 68 (73)
T ss_dssp HHHHHHHHHHTSCGGGGB
T ss_pred HHHHHHHHHHCcCHHHHh
Confidence 456799999999999875
No 73
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=40.19 E-value=19 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.2
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~v 171 (206)
T 2b0c_A 151 ARIYQHVLQAEGFSPSDTVFF 171 (206)
T ss_dssp HHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCCHHHeEEe
Confidence 579999999999999999986
No 74
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=39.71 E-value=19 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=18.6
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+++++.+++++++++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~v 164 (200)
T 3cnh_A 144 PAMYRLGLTLAQVRPEEAVMV 164 (200)
T ss_dssp HHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCCHHHeEEe
Confidence 578999999999999999885
No 75
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=39.68 E-value=9.3 Score=22.02 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=14.7
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 56 ~~l~~l~~~l~~~~~~l~ 73 (74)
T 1y7y_A 56 VNILKLATALDIEPRELF 73 (74)
T ss_dssp HHHHHHHHHTTSCGGGGC
T ss_pred HHHHHHHHHhCcCHHHHc
Confidence 456789999999998864
No 76
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=39.64 E-value=18 Score=24.01 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.8
Q ss_pred hHHHHHhhhhhhc-cCCCceEEE
Q psy6382 97 VRELYQKIAECYE-FPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~-i~~~eIlFC 118 (125)
-.+.|+++++.++ +++++++|.
T Consensus 160 ~~~~~~~~~~~~g~~~~~~~i~v 182 (238)
T 3ed5_A 160 MKEYFNYVFERIPQFSAEHTLII 182 (238)
T ss_dssp CHHHHHHHHHTSTTCCGGGEEEE
T ss_pred ChHHHHHHHHHcCCCChhHeEEE
Confidence 4689999999999 999999986
No 77
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=39.35 E-value=8.7 Score=25.06 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=15.9
Q ss_pred HHHHhhhhhhccCCCceEE
Q psy6382 99 ELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlF 117 (125)
+...+||++|+++++|++-
T Consensus 66 ~~l~kIa~~L~v~~~~L~~ 84 (88)
T 3t76_A 66 TVLLAICEYLNCDFGDIIE 84 (88)
T ss_dssp HHHHHHHHHHTCCGGGTCE
T ss_pred HHHHHHHHHHCcCHHHHhc
Confidence 4567999999999999864
No 78
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=38.91 E-value=9.5 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=14.6
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 53 ~~l~~la~~l~v~~~~l~ 70 (71)
T 2ewt_A 53 QRLAELADFYGVPVQELL 70 (71)
T ss_dssp HHHHHHHHHHTSCGGGGC
T ss_pred HHHHHHHHHHCcCHHHHc
Confidence 456789999999998763
No 79
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=38.80 E-value=26 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|=++|++.+++|+++.
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~q 41 (88)
T 4fbj_B 16 DIEPTDKVERIKERVEEKEGIPPQQQ 41 (88)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EECCCCCHHHHHHHHHHHHCcChhHE
Confidence 45667899999999999999998764
No 80
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=38.47 E-value=19 Score=24.61 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=19.1
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+++++.++++++|++|.
T Consensus 169 ~~~~~~~~~~lg~~~~~~i~v 189 (243)
T 3qxg_A 169 PEPYLMALKKGGLKADEAVVI 189 (243)
T ss_dssp SHHHHHHHHHTTCCGGGEEEE
T ss_pred hHHHHHHHHHcCCCHHHeEEE
Confidence 478999999999999999985
No 81
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.45 E-value=21 Score=23.58 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.9
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|-++|++..++|+++.
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~Q 68 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQ 68 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTC
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHE
Confidence 356778899999999999999988753
No 82
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=38.39 E-value=16 Score=24.39 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+++++.+++++++++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~v 178 (233)
T 3umb_A 157 APAAYALAPRAFGVPAAQILFV 178 (233)
T ss_dssp SHHHHTHHHHHHTSCGGGEEEE
T ss_pred CHHHHHHHHHHhCCCcccEEEE
Confidence 3578999999999999999986
No 83
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=38.36 E-value=21 Score=24.07 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=23.4
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
.|+.-.+|.+|-++|++..+||++++-.
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~qrL 52 (114)
T 2kdi_A 25 EVESSDTIDNVKSKIQDKEGIPPDQQRL 52 (114)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHEEE
Confidence 4566789999999999999999887543
No 84
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=38.19 E-value=19 Score=24.17 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=18.9
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.++++++|++|.
T Consensus 168 ~~~~~~~~~~lg~~~~~~i~v 188 (247)
T 3dv9_A 168 PEPYLMALKKGGFKPNEALVI 188 (247)
T ss_dssp SHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHcCCChhheEEE
Confidence 478999999999999999985
No 85
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=37.93 E-value=20 Score=22.85 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=19.1
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~i 163 (207)
T 2go7_A 143 PEAATYLLDKYQLNSDNTYYI 163 (207)
T ss_dssp SHHHHHHHHHHTCCGGGEEEE
T ss_pred cHHHHHHHHHhCCCcccEEEE
Confidence 578999999999999999985
No 86
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=37.92 E-value=20 Score=23.51 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=18.9
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.++++++|++|.
T Consensus 148 ~~~~~~~~~~lgi~~~~~i~i 168 (221)
T 2wf7_A 148 PDIFIAAAHAVGVAPSESIGL 168 (221)
T ss_dssp SHHHHHHHHHTTCCGGGEEEE
T ss_pred hHHHHHHHHHcCCChhHeEEE
Confidence 468999999999999999986
No 87
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.78 E-value=42 Score=21.95 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=29.8
Q ss_pred CceEEeeecccCC-CceeecCccchHHHHHhhhhhhccCCCceE
Q psy6382 74 PKLIFHCQLAHGS-PTGLISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 74 p~LvFh~QLAHGS-ptg~I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
..+........|. -+=.|+.-.+|.+|-++|++..+|++++.-
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr 65 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQR 65 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEE
Confidence 3444444433342 234677888999999999999999887653
No 88
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=37.72 E-value=19 Score=24.44 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=20.7
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
-.-.+.|+++++.++++|+|++|.
T Consensus 137 Kp~p~~~~~~~~~lg~~p~~~~~v 160 (210)
T 2ah5_A 137 PHKADVIHQALQTHQLAPEQAIII 160 (210)
T ss_dssp CSHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCChHHHHHHHHHcCCCcccEEEE
Confidence 356789999999999999999874
No 89
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=37.28 E-value=19 Score=23.80 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.4
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~v 124 (179)
T 3l8h_A 103 LPGMYRDIARRYDVDLAGVPAV 124 (179)
T ss_dssp SSHHHHHHHHHHTCCCTTCEEE
T ss_pred CHHHHHHHHHHcCCCHHHEEEE
Confidence 3578999999999999999884
No 90
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.90 E-value=11 Score=21.87 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.9
Q ss_pred HHHHhhhhhhccCCCceEE
Q psy6382 99 ELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlF 117 (125)
+...+||++|++++++++.
T Consensus 53 ~~l~~ia~~l~~~~~~l~~ 71 (76)
T 3bs3_A 53 DMLVKVAELLNVDPRQLIN 71 (76)
T ss_dssp HHHHHHHHHHTSCGGGGBC
T ss_pred HHHHHHHHHHCcCHHHHhc
Confidence 4568899999999998764
No 91
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=36.89 E-value=21 Score=23.68 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=19.3
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|++|.
T Consensus 145 k~~~~~~~~~~l~~~~~~~i~i 166 (229)
T 2fdr_A 145 KPDIFLHGAAQFGVSPDRVVVV 166 (229)
T ss_dssp SSHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCChhHeEEE
Confidence 3478999999999999999986
No 92
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=36.53 E-value=23 Score=23.31 Aligned_cols=22 Identities=0% Similarity=-0.034 Sum_probs=18.9
Q ss_pred hHHHHHhh---hhhhccCCCceEEE
Q psy6382 97 VRELYQKI---AECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kI---Ae~f~i~~~eIlFC 118 (125)
-++.|+.+ ++.+++++++++|.
T Consensus 154 ~~~~~~~~l~~~~~lgi~~~~~~~v 178 (240)
T 3smv_A 154 NPNNFTYMIDALAKAGIEKKDILHT 178 (240)
T ss_dssp SHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CHHHHHHHHHHHHhcCCCchhEEEE
Confidence 46788888 89999999999986
No 93
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=42.55 E-value=7.5 Score=23.28 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=22.1
Q ss_pred eecCccchHHHHHhhhhhhccCCCceE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
.|+.-.+|.+|-++|++..++|++++-
T Consensus 16 ~v~~~~tV~~lK~~i~~~~gi~~~~qr 42 (76)
T 3b1l_X 16 EVDSDTSILQLKEVVAKQQGVPADQLR 42 (76)
Confidence 455667899999999999999887754
No 94
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=36.24 E-value=18 Score=21.48 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=12.9
Q ss_pred HHHHHhhhhhhccCCCceE
Q psy6382 98 RELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIl 116 (125)
+++++.+.+++++|+++|.
T Consensus 21 ~~it~~~~~~lg~p~~~v~ 39 (65)
T 3ry0_A 21 EALTAAAHETLGTPVEAVR 39 (65)
T ss_dssp HHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHhCcCcccEE
Confidence 3445555688999987653
No 95
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=36.21 E-value=23 Score=24.17 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=20.1
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 99 ~p~~~~~~~~~~~~~~~~~l~V 120 (189)
T 3ib6_A 99 DKTIFDFTLNALQIDKTEAVMV 120 (189)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCcccEEEE
Confidence 4689999999999999999986
No 96
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=35.68 E-value=22 Score=24.52 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=19.0
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+++++.++++++|++|.
T Consensus 171 ~~~~~~~~~~lgi~~~~~i~i 191 (259)
T 4eek_A 171 PDLYTFAAQQLGILPERCVVI 191 (259)
T ss_dssp SHHHHHHHHHTTCCGGGEEEE
T ss_pred hHHHHHHHHHcCCCHHHEEEE
Confidence 578999999999999999985
No 97
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=35.43 E-value=23 Score=21.01 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=14.5
Q ss_pred HHHHhhhhhhccCCCceEEEEccC
Q psy6382 99 ELYQKIAECYEFPAEEVQFGALLE 122 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlFCTLNT 122 (125)
++.+.+++..++++++| |..++.
T Consensus 21 ~it~~~~~~lg~~~~~v-~V~i~E 43 (62)
T 3m20_A 21 RLTSVAAEIYGMDRSAI-TILIHE 43 (62)
T ss_dssp HHHHHHHHHHTCCTTSC-EEEEEC
T ss_pred HHHHHHHHHhCcCcceE-EEEEEE
Confidence 34444447788999887 455543
No 98
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=35.34 E-value=9.7 Score=21.36 Aligned_cols=20 Identities=30% Similarity=0.228 Sum_probs=16.4
Q ss_pred HHHHhhhhhhccCCCceEEE
Q psy6382 99 ELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlFC 118 (125)
+...+||++|++++++++.-
T Consensus 44 ~~l~~i~~~l~~~~~~l~~~ 63 (66)
T 2xi8_A 44 QLALKIAYYLNTPLEDIFQW 63 (66)
T ss_dssp HHHHHHHHHTTSCHHHHEEE
T ss_pred HHHHHHHHHHCcCHHHHhCC
Confidence 45678999999999988753
No 99
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=35.29 E-value=31 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=23.0
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|-++|++.+++|+++.
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q 41 (152)
T 3b08_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQQ 41 (152)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHHCcChHHe
Confidence 356677899999999999999998864
No 100
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=35.20 E-value=28 Score=26.30 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=25.3
Q ss_pred ceeecCccchHHHHHhhhhhhccCCC-ceEE
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAE-EVQF 117 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~-eIlF 117 (125)
+..++-..++++|++++.+.|+|+++ ++=.
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RL 185 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRL 185 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEE
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEE
Confidence 46678999999999999999999987 4533
No 101
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.05 E-value=22 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=18.9
Q ss_pred cchHHHHHhhhhhhccCCCce
Q psy6382 95 SNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eI 115 (125)
.+|.+|-++|++..++|+++.
T Consensus 32 ~TV~~LK~~i~~~~gip~~~q 52 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQ 52 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTC
T ss_pred CcHHHHHHHHHHHHCcCHHHE
Confidence 789999999999999988764
No 102
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=34.86 E-value=20 Score=20.46 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=11.7
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
++.+.+.+.+++++++|.
T Consensus 22 ~i~~~l~~~lg~~~~~v~ 39 (61)
T 2opa_A 22 KVTEAVKETTGASEEKIV 39 (61)
T ss_dssp HHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHhCcCcCeEE
Confidence 344444577899988764
No 103
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=34.80 E-value=45 Score=21.98 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=24.3
Q ss_pred eeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
=.|+.-.+|.+|-++|++..+++++++-+
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~qrL 78 (111)
T 2ojr_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQRL 78 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCTTTEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCcccEEE
Confidence 45677789999999999999999887643
No 104
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=34.69 E-value=25 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.1
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
.-..+|-++||+.+++++++|+|+
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~ 82 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITIT 82 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEe
Confidence 347889999999999999999986
No 105
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6
Probab=34.62 E-value=24 Score=23.36 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=19.0
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+++++.+++++++++|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~i~v 161 (209)
T 2hdo_A 141 PLPLLTALEKVNVAPQNALFI 161 (209)
T ss_dssp SHHHHHHHHHTTCCGGGEEEE
T ss_pred cHHHHHHHHHcCCCcccEEEE
Confidence 478999999999999999985
No 106
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=34.29 E-value=26 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.4
Q ss_pred chHHHHHhhhhhhccC-CCceEEE
Q psy6382 96 NVRELYQKIAECYEFP-AEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~-~~eIlFC 118 (125)
.-.+.|+.+++.++++ +++++|.
T Consensus 167 p~~~~~~~~~~~~g~~~~~~~i~v 190 (240)
T 3sd7_A 167 NKNEVIQYVLDLCNVKDKDKVIMV 190 (240)
T ss_dssp CHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCcEEEE
Confidence 4568899999999999 9999986
No 107
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=34.21 E-value=25 Score=23.99 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=19.2
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+++++.+++++++++|.
T Consensus 153 ~~~~~~~~~~~g~~~~~~i~i 173 (241)
T 2hoq_A 153 PKIFKKALKAFNVKPEEALMV 173 (241)
T ss_dssp HHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCCcccEEEE
Confidence 478999999999999999986
No 108
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=33.96 E-value=30 Score=22.18 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=23.2
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|=++|++.+++|+++.
T Consensus 37 l~v~~~~TV~~LK~~I~~~~gip~~~q 63 (98)
T 4hcn_B 37 LEVESSDTIDNVKSKIQDKEGIPPDQQ 63 (98)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EEECCCCcHHHHHHHHHHHhCCChhHE
Confidence 357778899999999999999988764
No 109
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=33.87 E-value=24 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.266 Sum_probs=20.7
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
..+|.++||+.+++++++|+|+.
T Consensus 67 ~~~lr~~la~~~g~~~~~i~~t~ 89 (360)
T 3hdo_A 67 SQKLREVAGELYGFDPSWIIMAN 89 (360)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEES
T ss_pred hHHHHHHHHHHhCcCcceEEEcC
Confidence 58999999999999999999873
No 110
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=33.58 E-value=25 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=30.9
Q ss_pred eEEeeec--ccCCCceeecC----ccchHHHHHhhhhhhccCCCceEEE
Q psy6382 76 LIFHCQL--AHGSPTGLISG----FSNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 76 LvFh~QL--AHGSptg~I~g----FsnVkELY~kIAe~f~i~~~eIlFC 118 (125)
-+|..++ ..|--||.+.| -..-.+.|+.+++.+++++++++|.
T Consensus 297 ~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~~~~~gi~~~~~i~v 345 (415)
T 3p96_A 297 YVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQTVAV 345 (415)
T ss_dssp EEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred ceeeeeEEEeCCEEEeeEccCCCCCcchHHHHHHHHHHcCcChhhEEEE
Confidence 3555444 45555666544 3456789999999999999999985
No 111
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=33.51 E-value=22 Score=25.10 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|..+++.++++|+|++|.
T Consensus 151 ~p~~~~~a~~~lg~~p~e~l~V 172 (243)
T 4g9b_A 151 DPEIFLAACAGLGVPPQACIGI 172 (243)
T ss_dssp STHHHHHHHHHHTSCGGGEEEE
T ss_pred cHHHHHHHHHHcCCChHHEEEE
Confidence 3589999999999999999985
No 112
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=33.31 E-value=30 Score=27.01 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=25.8
Q ss_pred ecccCCCceeecCccc--hHHHHHhhhhhhc-cCCCceEEEE
Q psy6382 81 QLAHGSPTGLISGFSN--VRELYQKIAECYE-FPAEEVQFGA 119 (125)
Q Consensus 81 QLAHGSptg~I~gFsn--VkELY~kIAe~f~-i~~~eIlFCT 119 (125)
|+.++...+ .++.+ ..+|.++|++.++ ..+++|+||.
T Consensus 87 ~~~~~~~~~--~~~~~~~~~~la~~la~~~~~~~~~~v~~~~ 126 (449)
T 2cjg_A 87 QAALNKPSN--SDVYSVAMARFVETFARVLGDPALPHLFFVE 126 (449)
T ss_dssp HHHTCCCCT--TTCCCHHHHHHHHHHHHHHCCTTCCEEEEES
T ss_pred HHHhcCCCC--cccCCHHHHHHHHHHHHhcCCCCCCEEEEeC
Confidence 666554333 23444 5789999999997 6788999983
No 113
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=33.25 E-value=24 Score=25.27 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=21.3
Q ss_pred chHHHHHhhhhhhccCCCceEEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFCT 119 (125)
...+|-++||+.++.++++|+|+.
T Consensus 52 ~~~~lr~~la~~~~~~~~~i~~t~ 75 (337)
T 3p1t_A 52 AEPRVMRKLAEHFSCPEDNLMLVR 75 (337)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEEES
T ss_pred chHHHHHHHHHHhCcCHHHEEEeC
Confidence 568999999999999999999863
No 114
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=33.17 E-value=31 Score=23.13 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=18.6
Q ss_pred HHHHHhhhhhhccCCC-ceEEE
Q psy6382 98 RELYQKIAECYEFPAE-EVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~-eIlFC 118 (125)
.+.|+.+++.++++++ +++|.
T Consensus 162 ~~~~~~~~~~lgi~~~~~~v~v 183 (231)
T 3kzx_A 162 PEPVLAALTNINIEPSKEVFFI 183 (231)
T ss_dssp SHHHHHHHHHHTCCCSTTEEEE
T ss_pred hHHHHHHHHHcCCCcccCEEEE
Confidence 4789999999999999 89875
No 115
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=32.90 E-value=25 Score=24.34 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=23.0
Q ss_pred CccchHHHHHhhhhhhccCCCceEEEEccC
Q psy6382 93 GFSNVRELYQKIAECYEFPAEEVQFGALLE 122 (125)
Q Consensus 93 gFsnVkELY~kIAe~f~i~~~eIlFCTLNT 122 (125)
.+...++.|+++|+-|. .+|+|+++|+
T Consensus 46 ~~~~~~~~~~~vAk~fk---gki~Fv~vd~ 72 (147)
T 3bj5_A 46 DYDGKLSNFKTAAESFK---GKILFAFIDS 72 (147)
T ss_dssp SHHHHHHHHHHHHHTTT---TTCEEEEECT
T ss_pred hHHHHHHHHHHHHHHcC---CceEEEEEec
Confidence 36678899999999984 5899999997
No 116
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=32.81 E-value=28 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.0
Q ss_pred chHHHHHhhhhhhccCCCceEEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFCT 119 (125)
...+|-++||+.+++++++|+|+.
T Consensus 52 ~~~~l~~~la~~~~~~~~~i~~~~ 75 (354)
T 3ly1_A 52 EILMLGNKLAAHHQVEAPSILLTA 75 (354)
T ss_dssp HHHHHHHHHHHHTTSCGGGEEEES
T ss_pred chHHHHHHHHHHhCCChHHEEEeC
Confidence 357999999999999999999973
No 117
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.68 E-value=23 Score=25.58 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=18.2
Q ss_pred chHHHHHhhhhhhccCCCceEEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFCT 119 (125)
+.+||.+|..++||-+.+ |+||
T Consensus 29 ~f~eL~~Kv~~~fGq~ld--L~y~ 50 (103)
T 2cu1_A 29 KLEDLRSKAKIAFGQSMD--LHYT 50 (103)
T ss_dssp CHHHHHHHHHHHHSSCEE--EEEC
T ss_pred cHHHHHHHHHHHhCCeee--EEEe
Confidence 568999999999998654 6666
No 118
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=32.43 E-value=29 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred chHHHHHhhhhhhccCCCceEEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFCT 119 (125)
...+|-++||+.+++++++|+|+.
T Consensus 62 ~~~~l~~~la~~~~~~~~~i~~~~ 85 (361)
T 3ftb_A 62 NYRRLNKSIENYLKLKDIGIVLGN 85 (361)
T ss_dssp TCHHHHHHHHHHHTCCSCEEEEES
T ss_pred cHHHHHHHHHHHhCCCcceEEEcC
Confidence 358999999999999999999973
No 119
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=32.37 E-value=29 Score=23.82 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|+++.
T Consensus 181 ~~~~~~~~~~~lgi~~~~~~~i 202 (259)
T 2ho4_A 181 EKTFFLEALRDADCAPEEAVMI 202 (259)
T ss_dssp SHHHHHHHGGGGTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCChHHEEEE
Confidence 4678999999999999999875
No 120
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=32.25 E-value=28 Score=23.76 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=19.2
Q ss_pred hHHHHHhhhhhhccCC-CceEEE
Q psy6382 97 VRELYQKIAECYEFPA-EEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~-~eIlFC 118 (125)
-.+.|+.+++.+++++ ++++|.
T Consensus 170 ~~~~~~~~~~~lgi~~~~~~i~v 192 (277)
T 3iru_A 170 FPDMALKVALELEVGHVNGCIKV 192 (277)
T ss_dssp SSHHHHHHHHHHTCSCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCCCccEEEE
Confidence 3578999999999999 999885
No 121
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=32.04 E-value=27 Score=25.92 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.7
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
..+|-++||+.+++++++|+|+.
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~ 82 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSR 82 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEES
T ss_pred HHHHHHHHHHHhCCChHHEEEcC
Confidence 68999999999999999999873
No 122
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=32.03 E-value=24 Score=24.93 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|.++++.++++|+|++|.
T Consensus 172 ~p~~~~~a~~~lg~~p~e~l~V 193 (250)
T 4gib_A 172 HPEIFLMSAKGLNVNPQNCIGI 193 (250)
T ss_dssp SSHHHHHHHHHHTCCGGGEEEE
T ss_pred cHHHHHHHHHHhCCChHHeEEE
Confidence 3589999999999999999985
No 123
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=31.94 E-value=33 Score=21.84 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=22.1
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.=.+|.+|-++|++..+||+++.
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~Q 48 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQ 48 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTC
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHe
Confidence 34666899999999999999988864
No 124
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=31.85 E-value=20 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=20.0
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
..+|.+.||+.+++++++|+|+
T Consensus 72 ~~~lr~~ia~~~~~~~~~i~~t 93 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAENVLVW 93 (423)
T ss_dssp CHHHHHHHHHHTTSCGGGEEEC
T ss_pred hHHHHHHHHHHhCCChhhEEEe
Confidence 5789999999999999999985
No 125
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=31.69 E-value=23 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHhhhhhhccCCCceEEEEcc
Q psy6382 98 RELYQKIAECYEFPAEEVQFGALL 121 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFCTLN 121 (125)
+++++.+.+++++|+++| |..++
T Consensus 22 ~~it~~l~~~lg~p~~~v-~V~i~ 44 (76)
T 3ej9_A 22 AGLLRVISEATGEPRENI-FFVIR 44 (76)
T ss_dssp HHHHHHHHHHHCCCGGGC-EEEEE
T ss_pred HHHHHHHHHHHCcCcccE-EEEEE
Confidence 344445557889999887 55554
No 126
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=31.59 E-value=25 Score=23.19 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.1
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|=++|++.++|+++++
T Consensus 17 ~v~~~~TV~~LK~~I~~~~gip~~~Q 42 (106)
T 3m62_B 17 DLEPSNTILETKTKLAQSISCEESQI 42 (106)
T ss_dssp CCCTTSBHHHHHHHHHHTTTSCGGGC
T ss_pred EECCCCcHHHHHHHHHHHHCCChhhE
Confidence 35677899999999999999988764
No 127
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.54 E-value=26 Score=24.10 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.0
Q ss_pred ecCccchHHHHHhhhhhhccCCCceE
Q psy6382 91 ISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 91 I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
|+-=..|.+|=++|++.+++|++++-
T Consensus 36 v~~~~TV~~lK~kI~~k~gip~~qQr 61 (100)
T 1wju_A 36 TRLHITGRELRSKIAETFGLQENYIK 61 (100)
T ss_dssp EESSSBHHHHHHHHHHHTTCCSTTCE
T ss_pred eCCcCHHHHHHHHHHHHHCcCHHHeE
Confidence 44557899999999999999998753
No 128
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=31.46 E-value=38 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=21.9
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|-++|++..+||+++.
T Consensus 51 ~v~~~~TV~~LK~~I~~~~gip~~~Q 76 (115)
T 1we7_A 51 TLPLTDQVSVIKVKIHEATGMPAGKQ 76 (115)
T ss_dssp EECSCSBTHHHHHHHHHHSSCCTTTE
T ss_pred EECCCCCHHHHHHHHHHHHCCChHHE
Confidence 35566899999999999999988764
No 129
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=31.24 E-value=30 Score=22.58 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=18.9
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+++++.++++++++++.
T Consensus 153 ~~~~~~~~~~~~i~~~~~i~i 173 (226)
T 1te2_A 153 PQVYLDCAAKLGVDPLTCVAL 173 (226)
T ss_dssp THHHHHHHHHHTSCGGGEEEE
T ss_pred hHHHHHHHHHcCCCHHHeEEE
Confidence 578999999999999999875
No 130
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=31.21 E-value=30 Score=21.77 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.0
Q ss_pred cCccchHHHHHhhhhhhccCCCc
Q psy6382 92 SGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~i~~~e 114 (125)
+.=+.|.+|.++|++..+|++++
T Consensus 18 ~~~~Tv~~Lk~~I~~~~gi~~~~ 40 (86)
T 2kzr_A 18 SSRTRLRELQGQIAAITGIAPGS 40 (86)
T ss_dssp CTTCBHHHHHHHHHHHTCCCTTT
T ss_pred CCCCCHHHHHHHHHHHhCCCccc
Confidence 33468999999999999998665
No 131
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=31.20 E-value=31 Score=23.48 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=20.1
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
+-.+.|+.+++.++++++|+++.
T Consensus 191 pk~~~~~~~~~~lgi~~~~~i~i 213 (271)
T 2x4d_A 191 PSPEFFKSALQAIGVEAHQAVMI 213 (271)
T ss_dssp TCHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCHHHHHHHHHHhCCCcceEEEE
Confidence 34689999999999999999875
No 132
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=30.98 E-value=20 Score=23.55 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=16.3
Q ss_pred HHHHhhhhhhccCCCceEE
Q psy6382 99 ELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlF 117 (125)
+...+||++|+++++++++
T Consensus 66 ~~l~~ia~~l~v~~~~l~~ 84 (111)
T 3mlf_A 66 SLLSKYMSAFNVKYDDIFL 84 (111)
T ss_dssp HHHHHHHHHHTCCGGGEEC
T ss_pred HHHHHHHHHhCcCHHHHhC
Confidence 4668999999999999875
No 133
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=30.96 E-value=28 Score=23.32 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~i 174 (232)
T 1zrn_A 153 DNRVYELAEQALGLDRSAILFV 174 (232)
T ss_dssp SHHHHHHHHHHHTSCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCcccEEEE
Confidence 4579999999999999999985
No 134
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=30.73 E-value=28 Score=23.02 Aligned_cols=21 Identities=5% Similarity=0.393 Sum_probs=18.2
Q ss_pred cCccchHHHHHhhhhhhccCC
Q psy6382 92 SGFSNVRELYQKIAECYEFPA 112 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~i~~ 112 (125)
..+++..++|+.++++|++|.
T Consensus 9 ~~i~~~~~f~~~~~~~~~~p~ 29 (90)
T 2cx6_A 9 DEIESQEDFYRDFSQTFGLAK 29 (90)
T ss_dssp TSCCSHHHHHHHHHHHTTCCT
T ss_pred CCCCCHHHHHHHHHHHhCCch
Confidence 457889999999999999874
No 135
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=30.67 E-value=31 Score=24.36 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~v 184 (263)
T 3k1z_A 163 DPRIFQEALRLAHMEPVVAAHV 184 (263)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCHHHEEEE
Confidence 3588999999999999999985
No 136
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.63 E-value=33 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.4
Q ss_pred CccchHHHHHhhhhhh--ccCCCce
Q psy6382 93 GFSNVRELYQKIAECY--EFPAEEV 115 (125)
Q Consensus 93 gFsnVkELY~kIAe~f--~i~~~eI 115 (125)
.-.+|.+|-++|++.+ ++++++.
T Consensus 28 ~~~TV~~lK~~I~~~~~~~i~~~~Q 52 (93)
T 1wgd_A 28 RGWSVGHLKAHLSRVYPERPRPEDQ 52 (93)
T ss_dssp TTSCHHHHHHHHHHHSTTCCCTTTC
T ss_pred CCCcHHHHHHHHHHHhcCCCChHHe
Confidence 7789999999999998 9988764
No 137
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.54 E-value=36 Score=22.37 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.8
Q ss_pred eecC-ccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISG-FSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~g-FsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+. -.+|.+|-++|++..+||+++.
T Consensus 46 ~v~~l~~TV~~LK~~I~~~~gip~~~Q 72 (111)
T 1we6_A 46 TVQSLSENVGSLKEKIAGEIQIPANKQ 72 (111)
T ss_dssp EESCSSSBHHHHHHHHHHHTTCCTTTS
T ss_pred EecCCCCcHHHHHHHHHHHHCCCHHHe
Confidence 4565 6889999999999999988764
No 138
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=30.17 E-value=27 Score=24.10 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=33.6
Q ss_pred CceEEeeec--ccCCCc------eeecCcc-chHHHHHhhhhhhccCCCceEEEE
Q psy6382 74 PKLIFHCQL--AHGSPT------GLISGFS-NVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 74 p~LvFh~QL--AHGSpt------g~I~gFs-nVkELY~kIAe~f~i~~~eIlFCT 119 (125)
-.++|+|+- .+|-.+ ||-..-+ .+.|-|++.++..||+.++|+|-+
T Consensus 96 ~~~i~~~~~~~~~g~~~~~~~LygR~~~~s~e~~e~F~~~~~~~Gl~~enI~~~~ 150 (157)
T 3fiq_A 96 DIIFFHNVNVDESGKETNVILVAGKREDLNKAQKQELRKLAEEYNIPNENTQHLV 150 (157)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGCEECG
T ss_pred CEEEEEEEEEcCCCcEEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEeCC
Confidence 357888876 455433 4444444 678889999999999999999854
No 139
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.15 E-value=49 Score=22.35 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=32.7
Q ss_pred ceEEeeecccCCCceeecCccchHHHHHhhhhhhccCCCc
Q psy6382 75 KLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 75 ~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f~i~~~e 114 (125)
-+.|.+.+.-..-+=.|+.=++|.+|=++|.+..+|||++
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~ 48 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSK 48 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTT
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhH
Confidence 4789998854445556677789999999999999999886
No 140
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=30.07 E-value=31 Score=25.90 Aligned_cols=22 Identities=9% Similarity=0.156 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
+.+|-++||+.+++++++|+|+
T Consensus 63 ~~~l~~~la~~~g~~~~~v~~~ 84 (432)
T 3a9z_A 63 INTARASLAKMIGGKPQDIIFT 84 (432)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHHcCCCcCeEEEe
Confidence 4789999999999999999886
No 141
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=29.93 E-value=31 Score=25.14 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhccCCCceEEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFCT 119 (125)
.+|-++||+.+++++++|+|+.
T Consensus 68 ~~lr~~la~~~~~~~~~v~~~~ 89 (365)
T 3get_A 68 IELKSTLAQKYKVQNENIIIGA 89 (365)
T ss_dssp HHHHHHHHHHHTCCGGGEEEES
T ss_pred HHHHHHHHHHhCCCcceEEECC
Confidence 6999999999999999999863
No 142
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=29.93 E-value=32 Score=20.54 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.9
Q ss_pred CCCceEEeeecccCCCceeecCccchHHHHHhhhhhh
Q psy6382 72 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 108 (125)
Q Consensus 72 ~~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f 108 (125)
.-|.++|.. .|....++.|+.+..+|.+.|.+..
T Consensus 76 ~~Pt~~~~~---~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 76 GVPQILYFK---DGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp SSCEEEEEE---TTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred cCCEEEEEE---CCEEEEEEeccCCHHHHHHHHHHHh
Confidence 356777763 4888899999999999998887654
No 143
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=29.74 E-value=22 Score=23.78 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=18.1
Q ss_pred HHHHhhhhhhccCCCceEEE
Q psy6382 99 ELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlFC 118 (125)
+.|+++++.+++++++++|.
T Consensus 150 ~~~~~~~~~lgi~~~~~i~v 169 (233)
T 3nas_A 150 DIFLTAAAMLDVSPADCAAI 169 (233)
T ss_dssp CHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHcCCCHHHEEEE
Confidence 58999999999999999885
No 144
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=29.69 E-value=33 Score=24.02 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=19.3
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 186 p~~~~~~~~~~~~~~~~~~~v 206 (264)
T 1yv9_A 186 AIIMERAIAHLGVEKEQVIMV 206 (264)
T ss_dssp HHHHHHHHHHHCSCGGGEEEE
T ss_pred HHHHHHHHHHcCCCHHHEEEE
Confidence 479999999999999999986
No 145
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=29.64 E-value=29 Score=25.22 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|.++++.++++|+|++|.
T Consensus 189 ~p~~~~~~~~~lg~~p~~~l~V 210 (261)
T 1yns_A 189 ESESYRKIADSIGCSTNNILFL 210 (261)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEE
T ss_pred CHHHHHHHHHHhCcCcccEEEE
Confidence 3699999999999999999985
No 146
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=29.39 E-value=23 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.1
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
..+|.+.||+-+++++++|+|+
T Consensus 78 ~~~lr~~ia~~~~~~~~~i~~t 99 (422)
T 3d6k_A 78 IADIRELWAEALGLPADLVVAQ 99 (422)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEC
T ss_pred CHHHHHHHHHHhCCChhHEEEe
Confidence 6789999999999999999984
No 147
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Probab=29.37 E-value=29 Score=25.74 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=20.9
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
---.+.|.++++.++++|+|++|.
T Consensus 187 KP~p~~~~~a~~~lg~~p~~~l~v 210 (253)
T 2g80_A 187 KTETQSYANILRDIGAKASEVLFL 210 (253)
T ss_dssp TTCHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCHHHHHHHHHHcCCCcccEEEE
Confidence 334799999999999999999985
No 148
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=29.33 E-value=39 Score=23.00 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=25.4
Q ss_pred CCCceEEeeecccCCCceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 72 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 72 ~~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.-|.++|-. .|-..+++.|+.+..+|-+.|.+...-++.++
T Consensus 91 ~iPT~~~fk---~G~~v~~~~G~~~~~~l~~~i~~~l~~~~~~~ 131 (142)
T 2es7_A 91 RFPATLVFT---DGKLRGALSGIHPWAELLTLMRSIVDTPAAQE 131 (142)
T ss_dssp SSSEEEEES---CC----CEESCCCHHHHHHHHHHHHC------
T ss_pred cCCeEEEEe---CCEEEEEEeCCCCHHHHHHHHHHHhcccccCC
Confidence 456777764 49999999999999999999988777665543
No 149
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=29.27 E-value=30 Score=22.97 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=19.1
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|+++.
T Consensus 178 k~~~~~~~~~~lgi~~~~~i~i 199 (250)
T 2c4n_A 178 SPWIIRAALNKMQAHSEETVIV 199 (250)
T ss_dssp STHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCcceEEEE
Confidence 3478999999999999999874
No 150
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=29.04 E-value=53 Score=20.15 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.2
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlFC 118 (125)
+|+--+.++.|.+++++..+++++++-|.
T Consensus 17 ~v~~~t~l~kl~~~y~~~~gi~~~~~rf~ 45 (72)
T 1wm3_A 17 KIKRHTPLSKLMKAYCERQGLSMRQIRFR 45 (72)
T ss_dssp EECTTSCTHHHHHHHHHHHTCCTTTCEEE
T ss_pred EECCCChHHHHHHHHHHHhCCCcceEEEE
Confidence 45666788899999999999999998774
No 151
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=28.88 E-value=41 Score=22.83 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=24.0
Q ss_pred CceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 87 PTGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 87 ptg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
-+-+|+--.+|.+|-++|++..+||+++.
T Consensus 20 ~e~~v~~~~TV~~lK~ki~~~~Gip~~~q 48 (122)
T 1t0y_A 20 MEKKYPAGMSLNDLKKKLELVVGTTVDSM 48 (122)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCTTTE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHe
Confidence 34466677899999999999999998873
No 152
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=28.86 E-value=22 Score=26.27 Aligned_cols=29 Identities=10% Similarity=0.238 Sum_probs=23.6
Q ss_pred eecCcc-chHHHHHhhhhhhccCCCceEEE
Q psy6382 90 LISGFS-NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 90 ~I~gFs-nVkELY~kIAe~f~i~~~eIlFC 118 (125)
|-..-+ .+.|-|++.|++.||+.++|+|-
T Consensus 129 R~~e~~~e~le~F~~~~~~~Gl~~e~Ii~~ 158 (192)
T 3bx6_A 129 DKPETTKEQLGEFYEALDCLRIPKSDVVYT 158 (192)
T ss_dssp SSSCCCTTTTHHHHHHHHHHTCCGGGCEEC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHEEEc
Confidence 333343 78899999999999999999985
No 153
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=28.86 E-value=31 Score=25.51 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.4
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
-+.++-+.||+.++.++++|+|+
T Consensus 70 ~~~~l~~~la~~~g~~~~~v~~~ 92 (406)
T 3cai_A 70 VLDAAREAVADLVNADPGGVVLG 92 (406)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHHHhCCCCCeEEEe
Confidence 47889999999999999999986
No 154
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=28.77 E-value=49 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=24.3
Q ss_pred ceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
+=.|+.-.+|.+|=++|++..++|+++.
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Q 61 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQ 61 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE
Confidence 4568899999999999999999998653
No 155
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=28.76 E-value=35 Score=22.19 Aligned_cols=21 Identities=19% Similarity=-0.010 Sum_probs=18.9
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~i~i 168 (225)
T 3d6j_A 148 PEGLLLAIDRLKACPEEVLYI 168 (225)
T ss_dssp THHHHHHHHHTTCCGGGEEEE
T ss_pred hHHHHHHHHHhCCChHHeEEE
Confidence 478999999999999999885
No 156
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=28.71 E-value=32 Score=25.23 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.6
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
..+|-++||+.+++++++|+|+.
T Consensus 61 ~~~l~~~la~~~~~~~~~v~~~~ 83 (364)
T 1lc5_A 61 YFHLHQALARHHQVPASWILAGN 83 (364)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEES
T ss_pred HHHHHHHHHHHHCcCHHHEEECC
Confidence 68999999999999999999873
No 157
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.60 E-value=48 Score=21.10 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=21.6
Q ss_pred eecCccchHHHHHhhhhh---hccCCCceE
Q psy6382 90 LISGFSNVRELYQKIAEC---YEFPAEEVQ 116 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~---f~i~~~eIl 116 (125)
.|+.-.+|.+|-++|++. .++|++++-
T Consensus 16 ~v~~~~TV~~LK~~I~~~~~~~gip~~~qr 45 (95)
T 1uel_A 16 DIDPEETVKALKEKIESEKGKDAFPVAGQK 45 (95)
T ss_dssp ECCTTSBHHHHHHHHHHHHCTTTCCTTTEE
T ss_pred EECCCCHHHHHHHHHHhhcccCCCChhhEE
Confidence 456668999999999998 578887754
No 158
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=28.46 E-value=33 Score=23.31 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i 184 (240)
T 2no4_A 163 DPRIYQFACDRLGVNPNEVCFV 184 (240)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCcccEEEE
Confidence 4578999999999999999886
No 159
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=28.42 E-value=42 Score=24.45 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred hHHHHHhhhhhhcc-CCCceEEEE
Q psy6382 97 VRELYQKIAECYEF-PAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i-~~~eIlFCT 119 (125)
..+|-++||+.+++ ++++|+|+.
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~ 92 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGN 92 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCCcceEEEcC
Confidence 68999999999999 788999874
No 160
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=28.38 E-value=36 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=19.3
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|..+++.++++++|+++.
T Consensus 165 ~~~~~~~~~~l~~~~~~~i~i 185 (251)
T 2pke_A 165 PQTYARVLSEFDLPAERFVMI 185 (251)
T ss_dssp HHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHhCcCchhEEEE
Confidence 789999999999999999986
No 161
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Probab=28.31 E-value=35 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.4
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|.++++.++++|+|++|.
T Consensus 163 p~~~~~~~~~lg~~p~~~~~v 183 (555)
T 3i28_A 163 PQIYKFLLDTLKASPSEVVFL 183 (555)
T ss_dssp HHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCChhHEEEE
Confidence 589999999999999999985
No 162
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=28.27 E-value=51 Score=23.60 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=28.9
Q ss_pred CceEEeeecccCCCceeecCccchHHHHHhhh----hhhccCCCceEE
Q psy6382 74 PKLIFHCQLAHGSPTGLISGFSNVRELYQKIA----ECYEFPAEEVQF 117 (125)
Q Consensus 74 p~LvFh~QLAHGSptg~I~gFsnVkELY~kIA----e~f~i~~~eIlF 117 (125)
..++++..+-+|=..-. -++||++|+ +..++++++|+.
T Consensus 61 ~~v~I~i~~~~GRt~eq------K~~L~~~I~~~l~~~~g~~~edV~V 102 (149)
T 3mf7_A 61 DTIFVHGLHREGRSADL------KGQLAQRIVDDVSVAAEIDRKHIWV 102 (149)
T ss_dssp CCEEEEEEEESCCCHHH------HHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred CEEEEEEEecCCCCHHH------HHHHHHHHHHHHHHHcCCChhhEEE
Confidence 45778999877655433 578999988 677899999876
No 163
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=27.98 E-value=28 Score=23.61 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=19.8
Q ss_pred cchHHHHHhhhhhhccCCCceEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlF 117 (125)
.+..+|+++|++.+.+++++|..
T Consensus 24 ~~y~~L~~~l~~kL~l~~~~~~L 46 (83)
T 1oey_A 24 LPYSQVRDMVSKKLELRLEHTKL 46 (83)
T ss_dssp CCHHHHHHHHHHHTTCCGGGCCE
T ss_pred CCHHHHHHHHHHHhCCCcceeEE
Confidence 47889999999999999887754
No 164
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=27.86 E-value=37 Score=24.90 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.9
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
++++-++||+.++.++++|+|+.
T Consensus 65 ~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 65 VERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEES
T ss_pred HHHHHHHHHHHcCCCCCcEEEeC
Confidence 57888899999999999999873
No 165
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=27.76 E-value=13 Score=22.92 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=15.6
Q ss_pred HHHHhhhhhhccCCCceEE
Q psy6382 99 ELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlF 117 (125)
+...+||++|+++++++++
T Consensus 56 ~~l~~la~~l~v~~~~l~~ 74 (91)
T 1x57_A 56 QVLGKIERAIGLKLRGKDI 74 (91)
T ss_dssp HHHHHHHHHHTBCCSSTTT
T ss_pred HHHHHHHHHHCcCHHHHcc
Confidence 4567899999999998753
No 166
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=27.37 E-value=35 Score=25.84 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
..+|.++||+.++..+++|+|+
T Consensus 87 ~~~l~~~la~~~~~~~~~v~~~ 108 (433)
T 1zod_A 87 VVDLATRLANITPPGLDRALLL 108 (433)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEE
T ss_pred HHHHHHHHHHhCCCCcCEEEEe
Confidence 4789999999999888999997
No 167
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_A
Probab=27.36 E-value=18 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=25.8
Q ss_pred cCccchHHHHHhhhhhhc-----cCCCceEEEE
Q psy6382 92 SGFSNVRELYQKIAECYE-----FPAEEVQFGA 119 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~-----i~~~eIlFCT 119 (125)
.|+.+.++.-+..|+.++ ++++||+.|-
T Consensus 94 ~G~~da~~~~~~~A~~lg~~~~~~~~~~Vlv~S 126 (199)
T 3it4_A 94 AGFADTHATAEAVAAALSDWGTETGAIEVAVCS 126 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCChHHEEEeC
Confidence 589999999999999999 9999999873
No 168
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=27.36 E-value=67 Score=19.31 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=22.8
Q ss_pred eeecCccchHHHHHhhhhh---hccCCCceEE
Q psy6382 89 GLISGFSNVRELYQKIAEC---YEFPAEEVQF 117 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~---f~i~~~eIlF 117 (125)
=.|+.-.+|.+|-++|++. -++|+++.-.
T Consensus 20 ~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrL 51 (85)
T 2wyq_A 20 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKL 51 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCTTTCCGGGEEE
T ss_pred EEECCCCCHHHHHHHHHhhccccCCCHHHeEE
Confidence 3567778999999999997 5788877543
No 169
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=27.34 E-value=35 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.9
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
+-.+.|+.+++.++++++|+++.
T Consensus 196 pk~~~~~~~~~~lgi~~~e~i~i 218 (271)
T 1vjr_A 196 PNPLVVDVISEKFGVPKERMAMV 218 (271)
T ss_dssp TSTHHHHHHHHHHTCCGGGEEEE
T ss_pred CCHHHHHHHHHHhCCCCceEEEE
Confidence 34578999999999999999875
No 170
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.26 E-value=43 Score=21.77 Aligned_cols=25 Identities=0% Similarity=-0.166 Sum_probs=21.8
Q ss_pred eecCccchHHHHHhhhhhhccCCCc
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~e 114 (125)
.|+.-.+|.+|-++|++..+||+++
T Consensus 23 ~v~~~~TV~~lK~~I~~~tgip~~~ 47 (96)
T 1wgg_A 23 ELNTDEPPMVFKAQLFALTGVQPAR 47 (96)
T ss_dssp EEESSSCHHHHHHHHHHHTCCCTTT
T ss_pred EECCCCcHHHHHHHHHHHHCcCHHH
Confidence 4566789999999999999998876
No 171
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.11 E-value=53 Score=22.74 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=19.4
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
+|.+||.+|..+.|.|+...+-.|
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lv 51 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLV 51 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEE
Confidence 589999999999999975555444
No 172
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=27.04 E-value=37 Score=24.27 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=19.4
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
++++-+.||+.++.++++|+|+.
T Consensus 45 ~~~~~~~la~~~~~~~~~i~~~~ 67 (382)
T 4hvk_A 45 VQEAREKVAKLVNGGGGTVVFTS 67 (382)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEES
T ss_pred HHHHHHHHHHHcCCCcCeEEEEC
Confidence 45788889999999999999873
No 173
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=26.94 E-value=41 Score=22.26 Aligned_cols=22 Identities=0% Similarity=0.010 Sum_probs=19.2
Q ss_pred hHHHHHhhhhhhc--cCCCceEEE
Q psy6382 97 VRELYQKIAECYE--FPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~--i~~~eIlFC 118 (125)
..+.|+++++.++ +++++++|.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~~~i~i 176 (234)
T 2hcf_A 153 PHIALERARRMTGANYSPSQIVII 176 (234)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred HHHHHHHHHHHhCCCCCcccEEEE
Confidence 4678999999999 999999885
No 174
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=26.84 E-value=47 Score=24.86 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccC-CCceEEEEc
Q psy6382 97 VRELYQKIAECYEFP-AEEVQFGAL 120 (125)
Q Consensus 97 VkELY~kIAe~f~i~-~~eIlFCTL 120 (125)
++++-++||+.++++ +++|+|+|=
T Consensus 80 ~~~~~~~la~~~g~~~~~~i~~~t~ 104 (398)
T 2fyf_A 80 VGRVRSGLAELFSLPDGYEVILGNG 104 (398)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEET
T ss_pred HHHHHHHHHHHhCCCCCceEEEeCC
Confidence 578889999999997 469999653
No 175
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=26.79 E-value=38 Score=25.12 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=20.8
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
.-+.++-++||+.++.++++|+|+
T Consensus 71 ~~~~~l~~~la~~~g~~~~~v~~~ 94 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDGEVVVT 94 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEEC
T ss_pred HHHHHHHHHHHHHcCCCcccEEEe
Confidence 345789999999999999999996
No 176
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=26.77 E-value=49 Score=21.81 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=30.8
Q ss_pred ceEEeeecccCCC-ceeecCccchHHHHHhhhhhhccCCCceEEE
Q psy6382 75 KLIFHCQLAHGSP-TGLISGFSNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 75 ~LvFh~QLAHGSp-tg~I~gFsnVkELY~kIAe~f~i~~~eIlFC 118 (125)
.+....|-.-|.. +=+|+--+.++.|.+++++..+++++++-|.
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~ 51 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 51 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE
Confidence 3444444223432 2256677889999999999999999998774
No 177
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=26.70 E-value=39 Score=25.03 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=18.8
Q ss_pred hHHHHHhhhhhh------ccCCCceEEEE
Q psy6382 97 VRELYQKIAECY------EFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f------~i~~~eIlFCT 119 (125)
+.+|.+.||+-+ ++++++|+|+.
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~ 105 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQNIALTN 105 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 578899999876 67899999863
No 178
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=26.44 E-value=40 Score=23.03 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.1
Q ss_pred hHHHHHhhhhhhccCC--CceEEE
Q psy6382 97 VRELYQKIAECYEFPA--EEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~--~eIlFC 118 (125)
-.+.|+++++.+++++ +|++|.
T Consensus 173 ~~~~~~~~~~~lgi~~~~~~~i~i 196 (250)
T 3l5k_A 173 DPDIFLACAKRFSPPPAMEKCLVF 196 (250)
T ss_dssp STHHHHHHHHTSSSCCCGGGEEEE
T ss_pred ChHHHHHHHHHcCCCCCcceEEEE
Confidence 3478999999999988 999985
No 179
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=26.20 E-value=41 Score=22.32 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=29.1
Q ss_pred ceEEeeecccC-CCc-------eeecCc-cchHHHHHhhhhhhccCCCceEEE
Q psy6382 75 KLIFHCQLAHG-SPT-------GLISGF-SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 75 ~LvFh~QLAHG-Spt-------g~I~gF-snVkELY~kIAe~f~i~~~eIlFC 118 (125)
..+|+|+-..+ ++. ||-..- ..+.|-+.+.|+..||+.++|+|-
T Consensus 91 ~yi~~~~~~~~~~~~~~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~ii~~ 143 (151)
T 1e5p_A 91 KIFFTNKNMDRAGQETNMIVVAGKGNALTPEENEILVQFAHEKKIPVENILNI 143 (151)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEEC
T ss_pred EEEEEEEecCCCCcEEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEEC
Confidence 45778775443 222 222222 356778899999999999999874
No 180
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=26.17 E-value=33 Score=22.32 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=17.5
Q ss_pred cCccchHHHHHhhhhhhccC
Q psy6382 92 SGFSNVRELYQKIAECYEFP 111 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~i~ 111 (125)
+..++..++|..++++|++|
T Consensus 9 ~~i~~~~~~~~~l~~~l~~P 28 (90)
T 2za4_B 9 EQIRSISDLHQTLKKELALP 28 (90)
T ss_dssp GGCCSHHHHHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHHHhCCC
Confidence 45788899999999999987
No 181
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.14 E-value=9.2 Score=21.60 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=14.5
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 48 ~~l~~i~~~l~~~~~~l~ 65 (68)
T 2r1j_L 48 ENLLALSKALQCSPDYLL 65 (68)
T ss_dssp HHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHh
Confidence 456789999999988764
No 182
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=26.08 E-value=39 Score=23.05 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~v 162 (222)
T 2nyv_A 141 SPTPVLKTLEILGEEPEKALIV 162 (222)
T ss_dssp TTHHHHHHHHHHTCCGGGEEEE
T ss_pred ChHHHHHHHHHhCCCchhEEEE
Confidence 4689999999999999999885
No 183
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=26.01 E-value=41 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhccCCCceEEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFCT 119 (125)
.+|-++||+.+++++++|+|+.
T Consensus 53 ~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 53 GTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp HHHHHHHHHHTTCCGGGEEEES
T ss_pred HHHHHHHHHHhCcCHHHEEEcC
Confidence 6899999999999999999873
No 184
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=25.84 E-value=29 Score=26.31 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.1
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
..+|-+.||+.+++++++|+|+
T Consensus 80 ~~~lr~~ia~~~~~~~~~i~~t 101 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQVLAG 101 (427)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEC
T ss_pred cHHHHHHHHHHhCCCcceEEEe
Confidence 5889999999999999999985
No 185
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=25.64 E-value=1.3e+02 Score=18.86 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=33.7
Q ss_pred CceEEeeecccCC-C-ceeecCccchHHHHHhhhhhhccCCCceEEE
Q psy6382 74 PKLIFHCQLAHGS-P-TGLISGFSNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 74 p~LvFh~QLAHGS-p-tg~I~gFsnVkELY~kIAe~f~i~~~eIlFC 118 (125)
..+....|-.-|+ . .=+|.--+.++.|..++++..+++++++-|.
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~ 52 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF 52 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE
Confidence 3455555544564 2 4567788899999999999999999988774
No 186
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=25.61 E-value=40 Score=24.84 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
..+|-+.||+-++.++++|+|+.
T Consensus 63 ~~~l~~~la~~~~~~~~~v~~~~ 85 (381)
T 1v2d_A 63 LPALREALAEEFAVEPESVVVTS 85 (381)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEES
T ss_pred CHHHHHHHHHhcCCChhhEEEcC
Confidence 67899999999999999998863
No 187
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=25.56 E-value=43 Score=23.78 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.++++++|+++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v 205 (264)
T 3epr_A 184 NAIIMNKALEILNIPRNQAVMV 205 (264)
T ss_dssp SHHHHHHHHHHHTSCGGGEEEE
T ss_pred CHHHHHHHHHHhCcCcccEEEE
Confidence 3578999999999999999986
No 188
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=25.53 E-value=66 Score=21.17 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.6
Q ss_pred eecCccchHHHHHhhhhhhccCCCceEEE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIlFC 118 (125)
+|+--+.++.|.+++++..+++++++-|.
T Consensus 21 ~vk~~t~l~kl~~~y~~~~gi~~~~~rf~ 49 (91)
T 2io0_B 21 KIKRHTPLSKLMKAYCERQGLSMRQIRFR 49 (91)
T ss_dssp EEETTSCTHHHHHHHHHHTTCCSTTEEEE
T ss_pred EECCCChHHHHHHHHHHHhCCCcccEEEE
Confidence 46666888999999999999999998775
No 189
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=25.48 E-value=40 Score=24.48 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.7
Q ss_pred hHHHHHhhhhhhc---cCCCceEEEE
Q psy6382 97 VRELYQKIAECYE---FPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~---i~~~eIlFCT 119 (125)
..+|-+.||+-++ +++++|+|+.
T Consensus 58 ~~~lr~~la~~~~~~~~~~~~v~~~~ 83 (335)
T 1uu1_A 58 DEELIEKILSYLDTDFLSKNNVSVGN 83 (335)
T ss_dssp CHHHHHHHHHHHTCSSCCGGGEEEES
T ss_pred hHHHHHHHHHHcCCCCCCHHHEEEcC
Confidence 7899999999999 8999999873
No 190
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=25.47 E-value=42 Score=20.27 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=26.4
Q ss_pred CCceEEeeecccCCCceeecCccchHHHHHhhhhhh
Q psy6382 73 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 108 (125)
Q Consensus 73 ~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f 108 (125)
-|.++|.- .|....++.|+.+..+|-+.|.+.+
T Consensus 72 ~Pt~~~~~---~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 72 GPTVLLFY---NGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp CCEEEEEE---TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred CCEEEEEe---CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 46777763 5888899999999999998887654
No 191
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=25.25 E-value=47 Score=21.69 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=21.2
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
..-.+.|+.+.+.+++++++++|.
T Consensus 78 kpk~~~~~~~~~~~~~~~~~~~~v 101 (164)
T 3e8m_A 78 VDKLSAAEELCNELGINLEQVAYI 101 (164)
T ss_dssp SCHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CChHHHHHHHHHHcCCCHHHEEEE
Confidence 566789999999999999999985
No 192
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=25.12 E-value=41 Score=22.70 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=19.4
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 122 k~~~~~~~~~~~~~~~~~~~~i 143 (187)
T 2wm8_A 122 KITHFERLQQKTGIPFSQMIFF 143 (187)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEE
T ss_pred hHHHHHHHHHHcCCChHHEEEE
Confidence 4678999999999999999884
No 193
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=25.00 E-value=45 Score=25.25 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.4
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
..||.++||+.++.++++|+|+.
T Consensus 88 ~~~l~~~la~~~~~~~~~v~~~~ 110 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLECVFLAD 110 (429)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCCCCEEEEeC
Confidence 57899999999999999999973
No 194
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=24.90 E-value=44 Score=22.97 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=28.8
Q ss_pred ccCCCceeecCccchHHHHHhhhhhhccCCCceEEEEccCCC
Q psy6382 83 AHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGALLENY 124 (125)
Q Consensus 83 AHGSptg~I~gFsnVkELY~kIAe~f~i~~~eIlFCTLNT~~ 124 (125)
++|=.+.-|.||. .+++.+.++||.++.+.|.+--+|
T Consensus 148 ~~Glgsc~~~~~~-----~~~v~~~l~lp~~~~~~~~i~lGy 184 (204)
T 2b67_A 148 DQGIGSNIILGFD-----KSKVNEVLEIEDRFRPELLITVGY 184 (204)
T ss_dssp HTTCEEEEECCBC-----HHHHHHHHTCCTTEEEEEEEEEEC
T ss_pred HCCCceeeEcccC-----HHHHHHHhCCCCCCceEEEEEeec
Confidence 5677778888884 467889999999888888775554
No 195
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=24.87 E-value=42 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.2
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
...+|-++||+.+++++++|+|+
T Consensus 68 ~~~~lr~~la~~~~~~~~~v~~~ 90 (363)
T 3ffh_A 68 WASSLRKEVADFYQLEEEELIFT 90 (363)
T ss_dssp -CHHHHHHHHHHHTCCGGGEEEE
T ss_pred chHHHHHHHHHHhCCChhhEEEe
Confidence 35899999999999999999986
No 196
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=24.83 E-value=49 Score=23.30 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=20.2
Q ss_pred chHHHHHhhhhhhccCC-CceEEE
Q psy6382 96 NVRELYQKIAECYEFPA-EEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~-~eIlFC 118 (125)
.-.+.|+.+++.+++++ ++++|.
T Consensus 205 p~~~~~~~~~~~lgi~~~~~~i~v 228 (282)
T 3nuq_A 205 PHVKAFEKAMKESGLARYENAYFI 228 (282)
T ss_dssp TSHHHHHHHHHHHTCCCGGGEEEE
T ss_pred cCHHHHHHHHHHcCCCCcccEEEE
Confidence 35689999999999998 999985
No 197
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=24.63 E-value=47 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
+.+|-+.||+.+++++++|+|+
T Consensus 46 ~~~l~~~la~~~g~~~~~v~~~ 67 (384)
T 1eg5_A 46 MEKAREKVAKVLGVSPSEIFFT 67 (384)
T ss_dssp HHHHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHHHcCCCCCeEEEE
Confidence 5889999999999999999886
No 198
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=24.59 E-value=71 Score=20.96 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.1
Q ss_pred ceeecCccchHHHHHhhhhhhccCCCceEE
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~eIlF 117 (125)
+=.|+.-.+|.+|-++|++..++|+++.-+
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL 119 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL 119 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEEE
Confidence 446777889999999999999999887644
No 199
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=24.53 E-value=43 Score=23.56 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=18.9
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.++++++|+++.
T Consensus 186 ~~~~~~~~~~lgi~~~~~~~i 206 (266)
T 3pdw_A 186 SIIMEQAMRVLGTDVSETLMV 206 (266)
T ss_dssp SHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCChhhEEEE
Confidence 478999999999999999986
No 200
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=24.47 E-value=17 Score=24.90 Aligned_cols=21 Identities=5% Similarity=-0.092 Sum_probs=15.0
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+.+.++++++|++|.
T Consensus 119 p~~~~~~~~~~gi~~~~~l~V 139 (176)
T 2fpr_A 119 VKLVERYLAEQAMDRANSYVI 139 (176)
T ss_dssp CGGGGGGC----CCGGGCEEE
T ss_pred HHHHHHHHHHcCCCHHHEEEE
Confidence 478999999999999999986
No 201
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=24.38 E-value=65 Score=21.02 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=32.6
Q ss_pred CceEEeeecccCCCc-eeecCccchHHHHHhhhhhhccCCCceEEE
Q psy6382 74 PKLIFHCQLAHGSPT-GLISGFSNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 74 p~LvFh~QLAHGSpt-g~I~gFsnVkELY~kIAe~f~i~~~eIlFC 118 (125)
..+....|-.-|+.. =+|.--+.++.|..++++..+++++++-|.
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~ 61 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 61 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE
Confidence 345555553345422 356677889999999999999999998875
No 202
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=24.31 E-value=11 Score=22.66 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=14.5
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 54 ~~l~~ia~~l~v~~~~l~ 71 (82)
T 3s8q_A 54 KSLELIMKGLEVSDVVFF 71 (82)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCcCHHHHh
Confidence 456789999999988764
No 203
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=24.26 E-value=42 Score=24.02 Aligned_cols=22 Identities=0% Similarity=0.077 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|.++++.++++|++++|.
T Consensus 178 ~p~~~~~~~~~~~~~~~~~~~v 199 (260)
T 2gfh_A 178 APSIFYHCCDLLGVQPGDCVMV 199 (260)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCChhhEEEE
Confidence 3689999999999999999885
No 204
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=24.15 E-value=51 Score=21.43 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=19.8
Q ss_pred cchHHHHHhhhhhhccCCCceEEE
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFC 118 (125)
..-.+.|+.+.+.+++++++++|.
T Consensus 83 kp~~~~~~~~~~~~~~~~~~~~~v 106 (162)
T 2p9j_A 83 YKKLEIYEKIKEKYSLKDEEIGFI 106 (162)
T ss_dssp --CHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCHHHHHHHHHHcCCCHHHEEEE
Confidence 345789999999999999999986
No 205
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.08 E-value=27 Score=20.90 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.4
Q ss_pred HHHHhhhhhhccCCCce
Q psy6382 99 ELYQKIAECYEFPAEEV 115 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eI 115 (125)
+...+||++|+++++++
T Consensus 55 ~~~~~ia~~l~v~~~~l 71 (80)
T 3kz3_A 55 YNAALLAKILKVSVEEF 71 (80)
T ss_dssp HHHHHHHHHHTSCGGGT
T ss_pred HHHHHHHHHhCCCHHHH
Confidence 56789999999998875
No 206
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=23.79 E-value=49 Score=22.87 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|+.+++.+++++++++|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v 170 (253)
T 1qq5_A 149 HPDSYALVEEVLGVTPAEVLFV 170 (253)
T ss_dssp SHHHHHHHHHHHCCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCHHHEEEE
Confidence 4579999999999999999886
No 207
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=23.42 E-value=47 Score=23.71 Aligned_cols=22 Identities=9% Similarity=0.079 Sum_probs=19.4
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
++++-+.||+.++.++++|+|+
T Consensus 36 ~~~l~~~la~~~g~~~~~i~~~ 57 (352)
T 1iug_A 36 FLKARGLLREAFRTEGEVLILT 57 (352)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHHHhCCCCceEEEc
Confidence 5788999999999988888886
No 208
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=23.28 E-value=11 Score=24.35 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=17.5
Q ss_pred hHHHHHhhh---hhhccCCCceEEEEc
Q psy6382 97 VRELYQKIA---ECYEFPAEEVQFGAL 120 (125)
Q Consensus 97 VkELY~kIA---e~f~i~~~eIlFCTL 120 (125)
..|||+-|| ..++=++++||---|
T Consensus 7 DdelY~YIas~t~~igEsaSdiLRRll 33 (50)
T 1xrx_A 7 DDELYSYIASHTKHIGESASDILRRML 33 (50)
T ss_dssp CHHHHHHHHTTCSSTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHhchhhccCHHHHHHHHH
Confidence 479999999 566668888864333
No 209
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=23.26 E-value=45 Score=24.78 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.7
Q ss_pred hHHHHHhhhhhhccCCCceEEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFCT 119 (125)
++++-+.||+.++.++++|+|+.
T Consensus 70 ~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 70 VDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEES
T ss_pred HHHHHHHHHHHcCCCCCeEEEeC
Confidence 46788899999999999999973
No 210
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=23.24 E-value=24 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.7
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 60 ~~l~~ia~~l~v~~~~l~ 77 (92)
T 1lmb_3 60 YNAALLAKILKVSVEEFS 77 (92)
T ss_dssp HHHHHHHHHHTSCGGGTC
T ss_pred HHHHHHHHHHCCCHHHHh
Confidence 456789999999998865
No 211
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=23.19 E-value=43 Score=23.06 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=19.1
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
-.+.|.++++.++++++|+++.
T Consensus 167 ~p~~~~~~~~~l~~~~~~~~~v 188 (240)
T 2hi0_A 167 APDMTSECVKVLGVPRDKCVYI 188 (240)
T ss_dssp SSHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHcCCCHHHeEEE
Confidence 3578999999999999999874
No 212
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=23.18 E-value=42 Score=23.26 Aligned_cols=21 Identities=0% Similarity=-0.048 Sum_probs=19.0
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~V 160 (218)
T 2o2x_A 140 PGMLVEAGKRLALDLQRSLIV 160 (218)
T ss_dssp CHHHHHHHHHHTCCGGGCEEE
T ss_pred HHHHHHHHHHcCCCHHHEEEE
Confidence 478999999999999999986
No 213
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=23.03 E-value=51 Score=22.66 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=23.1
Q ss_pred eecCccchHHHHHhhhhhhccCCCceE
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eIl 116 (125)
.|+-=.+|.+|=++||+..|+|++++.
T Consensus 37 ~v~p~DTI~~LK~~I~~k~Gip~~qQr 63 (93)
T 3plu_A 37 KCLGEDSVGDFKKVLSLQIGTQPNKIV 63 (93)
T ss_dssp EEETTSBHHHHHHHHHHHHTCCGGGEE
T ss_pred EECCcCHHHHHHHHHHHHhCCCHHHEE
Confidence 355668899999999999999999864
No 214
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.87 E-value=12 Score=22.94 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=14.7
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 54 ~~l~~ia~~l~v~~~~l~ 71 (78)
T 3qq6_A 54 QFLEKVSAVLDVSVHTLL 71 (78)
T ss_dssp HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHCcCHHHHh
Confidence 567789999999987765
No 215
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=22.87 E-value=50 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|-|.+.|+..||+.++|++-
T Consensus 126 e~~~~f~~~~~~~G~~~~~i~~~ 148 (156)
T 1bj7_A 126 EELEKYQQLNSERGVPNENIENL 148 (156)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEC
T ss_pred HHHHHHHHHHHHcCCCHHHEEec
Confidence 56778899999999999999874
No 216
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=22.56 E-value=52 Score=23.19 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=28.8
Q ss_pred ccCCCceeecCccchHHHHHhhhhhhccCCCceEEEEccCCC
Q psy6382 83 AHGSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGALLENY 124 (125)
Q Consensus 83 AHGSptg~I~gFsnVkELY~kIAe~f~i~~~eIlFCTLNT~~ 124 (125)
++|=.+.-+.+|. .+++.+.++||.++.+.|.+--+|
T Consensus 160 ~lGLgsc~~~~~~-----~~~v~~~L~lp~~~~~~~~i~lGy 196 (218)
T 3bem_A 160 AAGWDTCPMIGFD-----AEAVKRILNIDDQFEVVMMITIGK 196 (218)
T ss_dssp HTTCEEEEECCSC-----HHHHHHHHTCCTTEEEEEEEEEEC
T ss_pred HcCCCcccccCcC-----HHHHHHHhCCCCCceeEEEEEecC
Confidence 4577778888883 467889999998888888776555
No 217
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=22.39 E-value=44 Score=23.28 Aligned_cols=21 Identities=0% Similarity=-0.061 Sum_probs=19.2
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|..+++.++++++|++|.
T Consensus 134 p~~~~~~~~~lgi~~~~~~~V 154 (211)
T 2gmw_A 134 PGMLLSARDYLHIDMAASYMV 154 (211)
T ss_dssp CHHHHHHHHHHTBCGGGCEEE
T ss_pred HHHHHHHHHHcCCCHHHEEEE
Confidence 589999999999999999885
No 218
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=22.39 E-value=75 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=23.3
Q ss_pred eeecCccchHHHHHhhhhhhccCCCce
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
=.|+.-.+|.+|=++|++.+++|+++.
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~Q 76 (111)
T 3vdz_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQ 76 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEeCCCCCHHHHHHHHHHHhCCChHHE
Confidence 357778899999999999999998764
No 219
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=22.38 E-value=59 Score=24.63 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.1
Q ss_pred ccchHHHHHhhhhhhccCCCceEEEEcc
Q psy6382 94 FSNVRELYQKIAECYEFPAEEVQFGALL 121 (125)
Q Consensus 94 FsnVkELY~kIAe~f~i~~~eIlFCTLN 121 (125)
...++||++.|-+.=+|.++||...++-
T Consensus 50 ~~At~ELl~eii~~N~l~~eDIvSv~FT 77 (148)
T 1xho_A 50 VAETQKLLKEMAEKNGLEEDDIISIIFT 77 (148)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 4558999999999999999999877664
No 220
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=22.33 E-value=1.1e+02 Score=21.09 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=33.0
Q ss_pred CCCceEEeeecccCCCceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 72 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 72 ~~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.-|.++|- ..|....++.|..+..+|-+.|.+...-+..+|
T Consensus 168 ~~Pt~~~~---~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~~~i 208 (210)
T 3apq_A 168 SYPSLFIF---RSGMAAVKYNGDRSKESLVAFAMQHVRSTVTEL 208 (210)
T ss_dssp SSSEEEEE---CTTSCCEECCSCCCHHHHHHHHHHHHHCCSSCC
T ss_pred cCCeEEEE---ECCCceeEecCCCCHHHHHHHHHHhCcccceec
Confidence 35677776 458889999999999999999998887766654
No 221
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=22.30 E-value=49 Score=24.99 Aligned_cols=23 Identities=4% Similarity=0.251 Sum_probs=19.3
Q ss_pred hHHHHHhhhhhh------ccCCCceEEEE
Q psy6382 97 VRELYQKIAECY------EFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f------~i~~~eIlFCT 119 (125)
+.+|.+.||+-+ ++++++|+|+.
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~ 113 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTN 113 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEec
Confidence 578999999887 67899999973
No 222
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=22.21 E-value=51 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred chHHHHHhhhhhhccCCCceEEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFCT 119 (125)
.+.|-+.+.|+..||+.++|++-+
T Consensus 123 e~~~~f~~~~~~~G~~~~~i~~~~ 146 (160)
T 3sao_A 123 TAMAIFRKLARERNYTDEMVAVLP 146 (160)
T ss_dssp HHHHHHHHHHHTTTCCGGGEEECC
T ss_pred HHHHHHHHHHHHcCCCHHHEEECC
Confidence 577888999999999999999843
No 223
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=22.16 E-value=51 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=19.9
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
-++++-+.||+.++.++++|+|+
T Consensus 44 ~~~~l~~~la~~~g~~~~~v~~~ 66 (382)
T 4eb5_A 44 AVQEAREKVAKLVNGGGGTVVFT 66 (382)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCeEEEc
Confidence 46788899999999988899887
No 224
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=21.99 E-value=55 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.0
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|-+.+.|+..||+.++|++-
T Consensus 127 e~~~~f~~~~~~~G~~~~~i~~~ 149 (157)
T 1dzk_A 127 QDLEKFKEVTRENGIPEENIVNI 149 (157)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEES
T ss_pred HHHHHHHHHHHHcCCCHHHEEEC
Confidence 56777889999999999999873
No 225
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=21.96 E-value=52 Score=24.06 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=19.4
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
+.++-+.||+.++.++++|+|+
T Consensus 44 ~~~l~~~la~~~g~~~~~v~~t 65 (392)
T 2z9v_A 44 YEKVVDKAQKAMRLSNKPVILH 65 (392)
T ss_dssp HHHHHHHHHHHTTCSSCCEEES
T ss_pred HHHHHHHHHHHhCCCCCEEEEe
Confidence 6788899999999998999885
No 226
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=21.95 E-value=63 Score=23.23 Aligned_cols=21 Identities=0% Similarity=-0.164 Sum_probs=17.2
Q ss_pred HHHHhhhhhhccCCCceEEEE
Q psy6382 99 ELYQKIAECYEFPAEEVQFGA 119 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlFCT 119 (125)
++-+.+|+.++.++++|+||.
T Consensus 73 ~l~~~la~~~~~~~~~i~~~~ 93 (397)
T 3f9t_A 73 KAVALLGSLLNNKDAYGHIVS 93 (397)
T ss_dssp HHHHHHHHHTTCTTCEEEEES
T ss_pred HHHHHHHHHhCCCCCCEEEec
Confidence 455788899999999998873
No 227
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=21.92 E-value=56 Score=22.89 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=20.1
Q ss_pred chHHHHHhhhhhhccCCCceEEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlFC 118 (125)
.-.+.|+.+++.++++++|+++.
T Consensus 188 p~~~~~~~~~~~~~~~~~~~~~v 210 (268)
T 3qgm_A 188 PSEVIMREALDILGLDAKDVAVV 210 (268)
T ss_dssp TSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCHHHHHHHHHHhCCCchhEEEE
Confidence 34578999999999999999986
No 228
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=21.71 E-value=48 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.0
Q ss_pred hHHHHHhhhhhhccC-CCceEEEE
Q psy6382 97 VRELYQKIAECYEFP-AEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~-~~eIlFCT 119 (125)
..+|.++||+.++.+ +++|+|+.
T Consensus 88 ~~~l~~~la~~~~~~~~~~v~~~~ 111 (419)
T 2eo5_A 88 QLELAKKLVTYSPGNFQKKVFFSN 111 (419)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEES
T ss_pred HHHHHHHHHHhCCCCcCCEEEEeC
Confidence 578999999999988 88999973
No 229
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=21.70 E-value=52 Score=24.43 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=19.9
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
..+|.+.||+.+++++++|+|+
T Consensus 76 ~~~l~~~la~~~g~~~~~v~~~ 97 (397)
T 2zyj_A 76 YAPLRAFVAEWIGVRPEEVLIT 97 (397)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEE
T ss_pred CHHHHHHHHHHhCCChhhEEEe
Confidence 6889999999999989999986
No 230
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.60 E-value=63 Score=21.30 Aligned_cols=28 Identities=14% Similarity=-0.162 Sum_probs=23.9
Q ss_pred CceeecCccchHHHHHhhhhhhccCCCc
Q psy6382 87 PTGLISGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 87 ptg~I~gFsnVkELY~kIAe~f~i~~~e 114 (125)
-+-+|+--.+|.+|=++|.+..+||+++
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~ 57 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGT 57 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTT
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHH
Confidence 3456777789999999999999999876
No 231
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=21.58 E-value=62 Score=21.97 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred eecCccchHHHHHhhhhhhccCCCce
Q psy6382 90 LISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 90 ~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
.|+.-.+|.+|=++|++..++|+++.
T Consensus 97 ~v~~~~tV~~lK~~i~~~~gip~~~q 122 (159)
T 3rt3_B 97 EVRLTQTVAHLKQQVSGLEGVQDDLF 122 (159)
T ss_dssp EECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EeCCCCCHHHHHHHHHHHHCCCHHHE
No 232
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=21.55 E-value=51 Score=21.33 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=23.0
Q ss_pred eeecCccchHHHHHhhhhhhccCCCc
Q psy6382 89 GLISGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 89 g~I~gFsnVkELY~kIAe~f~i~~~e 114 (125)
-+++--.+|.+|=+||.+.+|||+++
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~ 44 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEY 44 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGG
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHH
Confidence 56777889999999999999999876
No 233
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=21.53 E-value=67 Score=20.56 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=26.5
Q ss_pred CCCceEEeeecccCCCceeecCccchHHHHHhhhhh
Q psy6382 72 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAEC 107 (125)
Q Consensus 72 ~~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~ 107 (125)
.-|.++|. ..|....++.|+.+..+|-+.|.+.
T Consensus 89 ~~Pt~~~~---~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 89 GIPTLLLF---KNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp BSSEEEEE---ESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred ccCEEEEE---ECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 35778876 3599999999999999988887654
No 234
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=21.48 E-value=53 Score=23.82 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=18.6
Q ss_pred hHHHHHhhh----hhhccCCCceEEEEc
Q psy6382 97 VRELYQKIA----ECYEFPAEEVQFGAL 120 (125)
Q Consensus 97 VkELY~kIA----e~f~i~~~eIlFCTL 120 (125)
-++||+.|+ +..+++++||+..-.
T Consensus 100 K~~l~~~l~~~L~~~~gi~~~dv~I~I~ 127 (161)
T 3c6v_A 100 RQGFLKRIDAFLTPMFEPKGIDWEYFVT 127 (161)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCChhhEEEEEE
Confidence 567888877 677899999987643
No 235
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=21.45 E-value=13 Score=22.43 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=14.2
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 58 ~~l~~ia~~l~v~~~~l~ 75 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVA 75 (86)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHh
Confidence 456789999999887753
No 236
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.27 E-value=30 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.4
Q ss_pred cCccchHHHHHhhhhhhccCCCc
Q psy6382 92 SGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~i~~~e 114 (125)
-||+|..-++...-+.||++|.+
T Consensus 79 ~Gf~~~s~F~r~Fk~~~G~tP~~ 101 (107)
T 2k9s_A 79 VGFDDQLYFSRVFKKCTGASPSE 101 (107)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHH
T ss_pred hCCCCHHHHHHHHHHHHCcCHHH
Confidence 48999999999999999998875
No 237
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=21.25 E-value=50 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=19.6
Q ss_pred hHHHHHhhhhhh----ccCCCceEEEE
Q psy6382 97 VRELYQKIAECY----EFPAEEVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f----~i~~~eIlFCT 119 (125)
..+|.+.||+-+ ++++++|+|+.
T Consensus 100 ~~~l~~~ia~~~~~~~~~~~~~i~~t~ 126 (432)
T 3ei9_A 100 AKPLRAAIAKTFYGGLGIGDDDVFVSD 126 (432)
T ss_dssp CHHHHHHHHHHHHTTTTCCGGGEEEES
T ss_pred CHHHHHHHHHHHHccCCCCcceEEECC
Confidence 488999999885 88999999973
No 238
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=21.05 E-value=72 Score=21.21 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.5
Q ss_pred CceeecCccchHHHHHhhhhhhccCCCc
Q psy6382 87 PTGLISGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 87 ptg~I~gFsnVkELY~kIAe~f~i~~~e 114 (125)
-+-+|+--.+|.+|=+||.+.++||+++
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~ 56 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNS 56 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTS
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHH
Confidence 4557788899999999999999998886
No 239
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}
Probab=21.03 E-value=28 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=21.3
Q ss_pred CccchHHHHHhhhhhhccCCCceEEEEccCC
Q psy6382 93 GFSNVRELYQKIAECYEFPAEEVQFGALLEN 123 (125)
Q Consensus 93 gFsnVkELY~kIAe~f~i~~~eIlFCTLNT~ 123 (125)
++...++.++++|+.|. +|+||+++..
T Consensus 151 ~~~~~~~~~~~vAk~~k----ki~F~~~d~~ 177 (250)
T 3ec3_A 151 ATQFWRNKVLEVAKDFP----EYTFAIADEE 177 (250)
T ss_dssp HHHHHHHHHHHHHTTCT----TSEEEEEETT
T ss_pred hHHHHHHHHHHHHHhhc----ceeEEEEcHH
Confidence 34447888999999887 6999998753
No 240
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=21.00 E-value=59 Score=21.01 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.+.++++.++++++|+++.
T Consensus 145 ~~~l~~~~~~lgi~~~~~~~i 165 (211)
T 1l7m_A 145 GEILEKIAKIEGINLEDTVAV 165 (211)
T ss_dssp HHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHcCCCHHHEEEE
Confidence 578899999999999999886
No 241
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=20.92 E-value=55 Score=22.65 Aligned_cols=44 Identities=18% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCceEEeeeccc-CCCceeecCccchHHHHHhhhhhhccCCCceEEEEccCCC
Q psy6382 73 KPKLIFHCQLAH-GSPTGLISGFSNVRELYQKIAECYEFPAEEVQFGALLENY 124 (125)
Q Consensus 73 ~p~LvFh~QLAH-GSptg~I~gFsnVkELY~kIAe~f~i~~~eIlFCTLNT~~ 124 (125)
|-+++|- +-| |++| -+-.|+=.+||..|+.+++.|.-=.+.|+|
T Consensus 16 Rke~~~~--v~hp~~~t------psk~eirekLA~~~~~~~~~vvv~~~~t~f 60 (98)
T 2g1d_A 16 RKEIKYV--LKFDSSRT------PSREEIKELIAKHEGVDKELVIVDNNKQLT 60 (98)
T ss_dssp EEEEEEE--EECCTTSC------CCHHHHHHHHHHHHHSCSTTEECCCCCCCS
T ss_pred cEEEEEE--EEeCCCCC------CCHHHHHHHHHHHHCCCCCEEEEEeeEecC
Confidence 4455554 457 7766 356889999999999999888777788776
No 242
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.84 E-value=14 Score=22.05 Aligned_cols=19 Identities=5% Similarity=-0.125 Sum_probs=15.1
Q ss_pred HHHHhhhhhhccCCCceEE
Q psy6382 99 ELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIlF 117 (125)
+...+||++|+++++++++
T Consensus 45 ~~l~~ia~~l~v~~~~l~~ 63 (77)
T 2k9q_A 45 VKYIAFLRSKGVDLNALFD 63 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHhC
Confidence 4567899999999887653
No 243
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=20.83 E-value=67 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.6
Q ss_pred cchHHHHHhhhhhhccCCCceEEEEcc
Q psy6382 95 SNVRELYQKIAECYEFPAEEVQFGALL 121 (125)
Q Consensus 95 snVkELY~kIAe~f~i~~~eIlFCTLN 121 (125)
..++||++.|-+.=+|.++||...++-
T Consensus 22 ~at~eLl~~i~~~N~l~~~dIvSv~FT 48 (127)
T 1dbf_A 22 QKTKQLLEKIIEENHTKPEDVVQMLLS 48 (127)
T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 458999999999999999999877664
No 244
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.77 E-value=13 Score=21.64 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=14.4
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 51 ~~l~~ia~~l~~~~~~l~ 68 (78)
T 3b7h_A 51 TTIRKVCGTLGISVHDFF 68 (78)
T ss_dssp HHHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHcCCCHHHHh
Confidence 445789999999988765
No 245
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=20.65 E-value=14 Score=21.52 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=14.2
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 53 ~~l~~la~~l~~~~~~l~ 70 (77)
T 2b5a_A 53 INIHKICAALDIPASTFF 70 (77)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhCcCHHHHh
Confidence 456789999999987754
No 246
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.63 E-value=32 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.2
Q ss_pred cCccchHHHHHhhhhhhccCCCc
Q psy6382 92 SGFSNVRELYQKIAECYEFPAEE 114 (125)
Q Consensus 92 ~gFsnVkELY~kIAe~f~i~~~e 114 (125)
-||+|..-++...-+.||++|.+
T Consensus 78 ~Gf~~~s~F~r~Fk~~~G~tP~~ 100 (103)
T 3lsg_A 78 VGFEDVNYFITKFKKYYQITPKQ 100 (103)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHH
T ss_pred hCCCCHHHHHHHHHHHHCcCHHH
Confidence 48999999999999999998875
No 247
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=20.63 E-value=70 Score=20.82 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.6
Q ss_pred CccchHHHHHhh-hhhhccCCCce
Q psy6382 93 GFSNVRELYQKI-AECYEFPAEEV 115 (125)
Q Consensus 93 gFsnVkELY~kI-Ae~f~i~~~eI 115 (125)
.-.+|.++=++| ++..++|+++.
T Consensus 22 ~~~TV~~lK~~I~~~~~gip~~~Q 45 (87)
T 2lxa_A 22 PSDTILQIKQHLISEEKASHISEI 45 (87)
T ss_dssp TTCBHHHHHHHHHHTTSCSSSTTE
T ss_pred CCCcHHHHHHHHHHHhcCCChHHE
Confidence 788999999999 99999999864
No 248
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.53 E-value=24 Score=21.07 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.0
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 55 ~~l~~i~~~l~~~~~~l~ 72 (88)
T 2wiu_B 55 TTFFKILQSLELSMTLCD 72 (88)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCCHHHhc
Confidence 456789999999998876
No 249
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=20.49 E-value=64 Score=18.90 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=25.3
Q ss_pred CCceEEeeecccCCCceeecCccchHHHHHhhhhh
Q psy6382 73 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAEC 107 (125)
Q Consensus 73 ~p~LvFh~QLAHGSptg~I~gFsnVkELY~kIAe~ 107 (125)
-|.++|-- .|....++.|+.+.++|-+.|.+.
T Consensus 74 ~Pt~~~~~---~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 74 IPTLIVFK---DGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp BSEEEEEE---TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred cCEEEEEe---CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 46776664 488889999999999998888653
No 250
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=20.40 E-value=64 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=17.9
Q ss_pred hHHHHHhhhhhhccCCC-ceEEEE
Q psy6382 97 VRELYQKIAECYEFPAE-EVQFGA 119 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~-eIlFCT 119 (125)
.+++-+++|+.++++++ +|+++|
T Consensus 51 ~~~~~~~la~~~g~~~~~~~i~~t 74 (362)
T 2c0r_A 51 HNEAQARLLALLGNPTGYKVLFIQ 74 (362)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEES
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEC
Confidence 46778888999999876 876665
No 251
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=20.29 E-value=59 Score=22.56 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhccCCCceEEE
Q psy6382 98 RELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 98 kELY~kIAe~f~i~~~eIlFC 118 (125)
.+.|+.+++.+++++++++|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~v 193 (243)
T 2hsz_A 173 PAPFYYLCGKFGLYPKQILFV 193 (243)
T ss_dssp SHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHhCcChhhEEEE
Confidence 578999999999999999885
No 252
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=20.28 E-value=71 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=17.9
Q ss_pred hHHHHHhhhhhhccCCCceEEE
Q psy6382 97 VRELYQKIAECYEFPAEEVQFG 118 (125)
Q Consensus 97 VkELY~kIAe~f~i~~~eIlFC 118 (125)
.+++-+.+++.++.++++|+|+
T Consensus 51 ~~~~~~~l~~~~g~~~~~v~~~ 72 (359)
T 1svv_A 51 CAKAARLIGELLERPDADVHFI 72 (359)
T ss_dssp HHHHHHHHHHHHTCTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCccEEEe
Confidence 4566777888899999999987
No 253
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=20.25 E-value=65 Score=23.40 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.4
Q ss_pred chHHHHHhhhhhhcc-CCCceEEEE
Q psy6382 96 NVRELYQKIAECYEF-PAEEVQFGA 119 (125)
Q Consensus 96 nVkELY~kIAe~f~i-~~~eIlFCT 119 (125)
-..+|-+.||+.++. ++++|+|+.
T Consensus 68 ~~~~l~~~la~~~~~~~~~~v~~~~ 92 (406)
T 1kmj_A 68 KMENVRKRASLFINARSAEELVFVR 92 (406)
T ss_dssp HHHHHHHHHHHHTTCSCGGGEEEES
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEeC
Confidence 367899999999998 789999873
No 254
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=20.23 E-value=62 Score=21.68 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=19.6
Q ss_pred chHHHHHhhhhhhccCCCceEE
Q psy6382 96 NVRELYQKIAECYEFPAEEVQF 117 (125)
Q Consensus 96 nVkELY~kIAe~f~i~~~eIlF 117 (125)
.+.|-+.+.|+..||+.++|++
T Consensus 128 e~~~~f~~~~~~~G~~~~~i~~ 149 (160)
T 2hlv_A 128 EDLEKFWKLTEDKGIDKKNVVN 149 (160)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHHHcCCCHHHEEE
Confidence 5678888999999999999987
No 255
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=20.11 E-value=69 Score=22.16 Aligned_cols=28 Identities=18% Similarity=0.021 Sum_probs=24.1
Q ss_pred ceeecCccchHHHHHhhhhhhccCCCce
Q psy6382 88 TGLISGFSNVRELYQKIAECYEFPAEEV 115 (125)
Q Consensus 88 tg~I~gFsnVkELY~kIAe~f~i~~~eI 115 (125)
+=.|+.-..|.+|=++|++.++||+++.
T Consensus 40 ~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 40 WLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 4467788899999999999999999765
No 256
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=20.06 E-value=27 Score=21.83 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.6
Q ss_pred HHHHhhhhhhccCCCceE
Q psy6382 99 ELYQKIAECYEFPAEEVQ 116 (125)
Q Consensus 99 ELY~kIAe~f~i~~~eIl 116 (125)
+...+||++|++++++++
T Consensus 48 ~~l~~la~~l~v~~~~l~ 65 (98)
T 3lfp_A 48 EMANRLAKVLKIPVSYLY 65 (98)
T ss_dssp HHHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHCcCHHHHh
Confidence 456689999999998864
Done!