RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6382
         (125 letters)



>gnl|CDD|113094 pfam04311, DUF459, Protein of unknown function (DUF459).  Putative
           periplasmic protein.
          Length = 339

 Score = 28.6 bits (63), Expect = 0.73
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 21  AKVSLLGEIFTMPLFTRKPKKDDHLLDNNNVGEHKSKIYNG 61
           AKV  LG  F MP     PKK   LL  +++ EHK+   + 
Sbjct: 151 AKVPFLG--FGMPDAFHVPKKFLALLAFHDIQEHKAAEIHA 189


>gnl|CDD|145067 pfam01718, Orbi_NS1, Orbivirus non-structural protein NS1, or
           hydrophobic tubular protein.  This family consists of
           orbivirus non-structural protein NS1, or hydrophobic
           tubular protein. NS1 has no specific function in virus
           replication, it is however thought to play a role in
           transport of mature virus particles from virus inclusion
           bodies to the cell membrane. Orbivirus are part of the
           larger reoviridae which have a dsRNA genome of at least
           10 segments encoding at least 10 viral proteins;
           orbivirus found in this family include bluetongue virus,
           and African horsesickness virus.
          Length = 546

 Score = 28.5 bits (64), Expect = 1.0
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 20  VAKVSLLGEIFTMPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSK 73
            A+ S L  +    +F  KP+ D   +D +++G     I  G        ED  
Sbjct: 452 TAERSALFRLLCFAIFGYKPEADGRYIDWDDLGTFLDIILKGE--DLSELEDED 503


>gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR
           family) member 1 (DHRS1) -like, classical (c) SDRs.
           This subgroup includes human DHRS1 and related proteins.
           These are members of the classical SDR family, with a
           canonical Gly-rich  NAD-binding motif and the typical
           YXXXK active site motif. However, the rest of the
           catalytic tetrad is not strongly conserved. DHRS1 mRNA
           has been detected in many tissues, liver, heart,
           skeletal muscle, kidney and pancreas; a longer
           transcript is predominantly expressed in the liver , a
           shorter one in the heart. SDRs are a functionally
           diverse family of oxidoreductases that have a single
           domain with a structurally conserved Rossmann fold
           (alpha/beta folding pattern with a central beta-sheet),
           an NAD(P)(H)-binding region, and a structurally diverse
           C-terminal region. Classical SDRs are typically about
           250 residues long, while extended SDRS are approximately
           350 residues. Sequence identity between different SDR
           enzymes are typically in the 15-30% range, but the
           enzymes share the Rossmann fold NAD-binding motif and
           characteristic NAD-binding and catalytic sequence
           patterns. These enzymes have a 3-glycine N-terminal
           NAD(P)(H)-binding pattern (typically, TGxxxGxG in
           classical SDRs and TGxxGxxG in extended SDRs), while
           substrate binding is in the C-terminal region. A
           critical catalytic Tyr residue (Tyr-151, human
           15-hydroxyprostaglandin dehydrogenase (15-PGDH)
           numbering), is often found in a conserved YXXXK pattern.
           In addition to the Tyr and Lys, there is often an
           upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn
           (Asn-107, 15-PGDH numbering) or additional Ser,
           contributing to the active site. Substrates for these
           enzymes include sugars, steroids, alcohols, and aromatic
           compounds. The standard reaction mechanism is a proton
           relay involving the conserved Tyr and Lys, as well as
           Asn (or Ser). Some SDR family members, including 17
           beta-hydroxysteroid dehydrogenase contain an additional
           helix-turn-helix motif that is not generally found among
           SDRs.
          Length = 265

 Score = 27.4 bits (61), Expect = 1.8
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 3   LFTRKPKKDDHLLD---NNNVAKVSLLGEIFTMPLFTRKPKKDDHLLDNNNVG 52
           LF R  ++    LD   NN  A V L+      P +   P   D   D NNVG
Sbjct: 71  LFERVAREQQGRLDILVNNAYAAVQLILVGVAKPFWEEPPTIWD---DINNVG 120


>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional.
          Length = 448

 Score = 26.2 bits (58), Expect = 4.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 63  KSPAPVTEDSKPKLIFHCQLAHGSPTGLISG-FSNVRELYQKIAECYE 109
           + PAP+ E+ K K+I   ++    P  LI      +RE   + AE  E
Sbjct: 378 RPPAPIAEEIKKKIIGDEEVITCRPADLIEPQLEKLREEIAEYAESEE 425


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,285,715
Number of extensions: 528044
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 11
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)