RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6382
         (125 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.12
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 66  APVTEDSKPKLIFHCQLAHGSPTGLISGFS--NVRELYQKIAEC 107
            P+   S P LI   QLAH   T  + GF+   +R   +     
Sbjct: 234 IPI---SCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.22
 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 9/30 (30%)

Query: 53 EHKSKIYNGTKSPAPVTEDSKPKLIFHCQL 82
          +   K+Y      A    DS P L     +
Sbjct: 26 QASLKLY------AD---DSAPALAIKATM 46


>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
           center for structural genomics, JCSG; 2.60A {Deinococcus
           geothermalis dsm 11300}
          Length = 423

 Score = 25.4 bits (56), Expect = 6.6
 Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 1/44 (2%)

Query: 68  VTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFP 111
              D   K I      + +P G        R L    A   +F 
Sbjct: 167 AGTDPSVKGI-LFVPTYSNPGGETISLEKARRLAGLQAAAPDFT 209


>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
           kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
           2ou7_A* 3fc2_A* 3thb_A*
          Length = 335

 Score = 25.0 bits (55), Expect = 8.8
 Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 95  SNVRELYQKIAEC-YEFP 111
           S ++E Y +I +  Y  P
Sbjct: 244 SCLKETYLRIKKNEYSIP 261


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 9.3
 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 95  SNVRELYQKIAECYEFPAEEVQFGAL---LENY 124
            N   L++ I + Y  P        +   L+ Y
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472


>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
           selectivity residues, POLO-like K structure based drug
           design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
           sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
           3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
           3db6_A* 3dbe_A* 3dbf_A*
          Length = 294

 Score = 24.8 bits (55), Expect = 9.8
 Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 95  SNVRELYQKIAEC-YEFP 111
           S ++E Y +I +  Y  P
Sbjct: 218 SCLKETYLRIKKNEYSIP 235


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,817,862
Number of extensions: 93968
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 14
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)