BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6385
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q07|A Chain A, Crystal Structure Of Af0587, A Protein Of Unknown Function
Length = 306
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 38 TKDCIEKALTKNEQVKGKIDAYRKFKAHML-----VELSGAFPNELAKYRAIR-EKALTK 91
+ + IE+ L + + KGK+D YR+ H L + SG + + +K L +
Sbjct: 149 SDESIER-LKQEIESKGKVDLYRRILEHXLSYQFGITWSGKVAGRYPELELLEGKKRLAR 207
Query: 92 NEQVKGKIDAYRKFKAHML 110
+++ G +D Y K A++L
Sbjct: 208 VDRIYGXLDIYEKIAAYLL 226
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 78 LAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 128
++ ++ +E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 86 ISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 136
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 43 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 85
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 94 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 136
>pdb|3F09|A Chain A, 1.82 Angstrom Resolution Crystal Structure Of
Holo-(Acyl-Carrier- Protein) Synthase (Acps) From
Staphylococcus Aureus
pdb|3F09|B Chain B, 1.82 Angstrom Resolution Crystal Structure Of
Holo-(Acyl-Carrier- Protein) Synthase (Acps) From
Staphylococcus Aureus
pdb|3F09|C Chain C, 1.82 Angstrom Resolution Crystal Structure Of
Holo-(Acyl-Carrier- Protein) Synthase (Acps) From
Staphylococcus Aureus
pdb|4DXE|A Chain A, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|B Chain B, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|C Chain C, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|D Chain D, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|E Chain E, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|F Chain F, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 143
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 26 DYIDQGRNPQLYTKD--CIEKALTKNEQVKGKIDAYRKFKAHMLV-------ELSGAFPN 76
D I+ R LY+K +E+ LTKNEQ K + + K L S A
Sbjct: 32 DLIEIDRIQALYSKQPKLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGT 91
Query: 77 ELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLV 111
L K+ A + +E K KID Y F H+ +
Sbjct: 92 GLGKHVAFNDIDCYNDELGKPKID-YEGFIVHVSI 125
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 78 LAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 128
++ ++ +E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 86 ISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 136
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 43 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 85
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 94 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 136
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 78 LAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 128
++ ++ +E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 84 ISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 43 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 85
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 92 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 78 LAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 128
++ ++ +E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 84 ISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 43 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 85
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 92 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 78 LAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 128
++ ++ +E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 84 ISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 43 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 85
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 92 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 78 LAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 128
++ ++ +E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 84 ISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 43 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 85
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 92 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 78 LAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 128
++ ++ +E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 108 ISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 158
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 43 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 85
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 116 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,995,740
Number of Sequences: 62578
Number of extensions: 147168
Number of successful extensions: 415
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 20
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)