BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6385
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes
aegypti GN=MED10 PE=3 SV=1
Length = 130
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 79/85 (92%), Gaps = 1/85 (1%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQEIDKLK+QV D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+YR
Sbjct: 44 LVTGLQEIDKLKNQV-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK++++ EL FP E+AKY+AIR
Sbjct: 103 KFKSNLMKELDETFPTEIAKYKAIR 127
>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles
gambiae GN=MED10 PE=3 SV=2
Length = 130
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%), Gaps = 1/85 (1%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQEIDKLK+Q+ D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+YR
Sbjct: 44 LVTGLQEIDKLKNQI-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK++++ ELS FP E++KY+AIR
Sbjct: 103 KFKSNLMKELSETFPVEISKYKAIR 127
>sp|Q9GYU7|MED10_DROME Mediator of RNA polymerase II transcription subunit 10
OS=Drosophila melanogaster GN=MED10 PE=1 SV=1
Length = 133
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVF-DYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 59
+++GLQEIDKL+SQVQD++VP EVF DYIDQ +NPQLYTKDC+EKAL KNE+VKGKI+
Sbjct: 44 LVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGL 103
Query: 60 RKFKAHMLVELSGAFPNELAKYRAIREKAL 89
+KFK ++L+EL FPNE+ YRA R+ ++
Sbjct: 104 KKFKTNLLLELYKTFPNEMNNYRAYRKDSM 133
>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
tropicalis GN=med10 PE=2 SV=1
Length = 135
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 73/85 (85%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 LVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK+ ++ ELS FP ++AKY+AIR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAIR 128
>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus
musculus GN=Med10 PE=1 SV=1
Length = 135
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK+ ++ ELS FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128
>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
laevis GN=med10 PE=2 SV=1
Length = 135
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
++ GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 LVRGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK+ ++ ELS FP ++AKY+A+R
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAVR 128
>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo
abelii GN=MED10 PE=2 SV=1
Length = 135
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK+ ++ ELS FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128
>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo
sapiens GN=MED10 PE=1 SV=1
Length = 135
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK+ ++ ELS FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128
>sp|Q3ZCF2|MED10_BOVIN Mediator of RNA polymerase II transcription subunit 10 OS=Bos
taurus GN=MED10 PE=2 SV=1
Length = 135
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 73/85 (85%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK+ ++ ELS FP ++AKYR+IR
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIR 128
>sp|Q0VIA1|MED10_DANRE Mediator of RNA polymerase II transcription subunit 10 OS=Danio
rerio GN=med10 PE=2 SV=1
Length = 134
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
MI+GLQ+I+K + Q+ DI+VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID
Sbjct: 44 MITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLT 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAI 84
KFK+ ++ EL FP E+AKY+AI
Sbjct: 104 KFKSLLISELGKVFPEEMAKYKAI 127
>sp|Q4R6W4|MED10_MACFA Mediator of RNA polymerase II transcription subunit 10 OS=Macaca
fascicularis GN=MED10 PE=2 SV=1
Length = 135
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 72/85 (84%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KFK+ ++ LS FP ++AKYR+IR
Sbjct: 104 KFKSLLIQGLSKVFPEDMAKYRSIR 128
>sp|P45966|MED10_CAEEL Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis elegans GN=mdt-10 PE=3 SV=1
Length = 173
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 61/86 (70%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
++ GLQ++D++K D VPL++ Y+D G+NP LY+K C+EK L KN+ V GKI+ Y+
Sbjct: 83 LVRGLQDLDRMKGTFSDKKVPLDLLPYLDDGKNPCLYSKHCMEKTLEKNKAVNGKIEIYK 142
Query: 61 KFKAHMLVELSGAFPNELAKYRAIRE 86
KF+AH++ E S P+ + YR+IRE
Sbjct: 143 KFRAHLMKEFSEEMPDLVMYYRSIRE 168
>sp|Q61Z20|MED10_CAEBR Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis briggsae GN=mdt-10 PE=3 SV=1
Length = 173
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 60/85 (70%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+I GLQ++D++K D +VPL++ Y+D G+NP LY+K C+EK L KN+ V GKI+ Y+
Sbjct: 87 LIRGLQDLDRMKGTFSDKNVPLDILPYLDDGKNPLLYSKHCMEKTLEKNKAVNGKIEMYK 146
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR 85
KF+AH++ E S P+ + +YR R
Sbjct: 147 KFRAHLIKEFSEEMPDFVIEYRKER 171
>sp|F4HPA7|MD10B_ARATH Mediator of RNA polymerase II transcription subunit 10b
OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1
Length = 189
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 3 SGLQEIDKLK--SQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
S + E+D + S+ +I +P+EV + ID G+NP +TKD + + +N+ KGK DA++
Sbjct: 77 SLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKTDAFK 136
Query: 61 KFKAHMLVELSGAFPNELAKYRAIR--EKALTK 91
+ H+L EL FP+E+ YR IR A+TK
Sbjct: 137 DLRKHILEELEQNFPDEVDMYREIRASSAAVTK 169
>sp|Q9FHZ2|MD10A_ARATH Mediator of RNA polymerase II transcription subunit 10a
OS=Arabidopsis thaliana GN=MED10A PE=1 SV=1
Length = 186
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 17 DIHVPLEVFDYIDQGRNPQLYTKDCIEK-ALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 75
+I VP+EV + ID G+NP +TKD + K + KN+ KGK DA++ + H+L EL AFP
Sbjct: 89 NIQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAFKGLRKHLLEELEQAFP 148
Query: 76 NELAKYRAIR 85
+E+ +YR IR
Sbjct: 149 DEVDRYRDIR 158
>sp|Q54GE5|MED10_DICDI Putative mediator of RNA polymerase II transcription subunit 10
OS=Dictyostelium discoideum GN=med10 PE=3 SV=1
Length = 219
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 63/99 (63%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+I+ ++I+ + V D+ +PLE+F IDQ +NP LY K+ ++ L+ NE+ KGKI++ +
Sbjct: 90 IINLYEKIESNRHIVNDVEIPLEIFRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIK 149
Query: 61 KFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKI 99
FK + +S +F +E A+Y+ + +K T+ +Q +I
Sbjct: 150 NFKKELESHISESFASEYAEYKLLTQKKETQEQQNDDQI 188
>sp|Q1E0Q7|MED10_COCIM Mediator of RNA polymerase II transcription subunit 10
OS=Coccidioides immitis (strain RS) GN=NUT2 PE=3 SV=3
Length = 163
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 3 SGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKF 62
+GL D VQ I +P E+ DY+D RNP +YT++ +E N+++KGK++A+ F
Sbjct: 71 TGLSPADP---PVQSIQLPPEIIDYVDAARNPDIYTREFVELVQKSNQELKGKMEAFASF 127
Query: 63 KAHMLVELSGAFP 75
+ + E++ A P
Sbjct: 128 RDVLAKEMASAMP 140
>sp|Q758M1|MED10_ASHGO Mediator of RNA polymerase II transcription subunit 10 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=NUT2 PE=3 SV=2
Length = 151
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 13 SQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSG 72
SQ++++++PLEV YI+ GRNP +YT++ +E N+ + K+ A +K + + ++
Sbjct: 70 SQLRNMNIPLEVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKMHALKKLRDSLAEKIGE 129
Query: 73 AFPNELAKYRAIREKA 88
FP+ + + + I E+A
Sbjct: 130 EFPDLVPQVQGIIERA 145
>sp|Q6C5P0|MED10_YARLI Mediator of RNA polymerase II transcription subunit 10 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=NUT2 PE=3 SV=1
Length = 143
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
M + ++E +LK D +P++V DYIDQGRNP +YT++ +E L +N+ + GK+D Y
Sbjct: 44 MDTLVKEFQRLKEIKCDKQIPIDVIDYIDQGRNPDVYTREFVELLLKQNQFIHGKMDIYT 103
Query: 61 KFKA 64
K
Sbjct: 104 VSKG 107
>sp|Q4WJH6|MED10_ASPFU Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=nut2 PE=3 SV=1
Length = 159
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 15 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 74
++DI +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A
Sbjct: 77 LRDIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAREMRSAM 136
Query: 75 P 75
P
Sbjct: 137 P 137
>sp|A1D434|MED10_NEOFI Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=nut2 PE=3 SV=1
Length = 167
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 15 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 74
++DI +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A
Sbjct: 85 LRDIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAREMRSAM 144
Query: 75 P 75
P
Sbjct: 145 P 145
>sp|A1CR70|MED10_ASPCL Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=nut2 PE=3 SV=1
Length = 167
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 9 DKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLV 68
D + I +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ +
Sbjct: 82 DNPDPPLSSIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAR 141
Query: 69 ELSGAFP 75
E+ A P
Sbjct: 142 EMRSAMP 148
>sp|Q7RXK7|MED10_NEUCR Mediator of RNA polymerase II transcription subunit 10
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nut-2 PE=3 SV=1
Length = 253
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 16 QDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 75
Q+ +P+ + Y++ GRNP +YT++ IE N+ ++GK+ A+R F+ + E+ A P
Sbjct: 137 QNPGIPIPLITYVENGRNPDVYTREFIELVRRSNQLMRGKMHAFRDFRDVLAGEMEAALP 196
>sp|Q0CTF3|MED10_ASPTN Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=nut2 PE=3 SV=1
Length = 155
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 15 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 74
+ I +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A
Sbjct: 76 ISTIELPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFAGFRDVLAREMRSAM 135
Query: 75 P 75
P
Sbjct: 136 P 136
>sp|Q5B5I6|MED10_EMENI Mediator of RNA polymerase II transcription subunit 10
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=nut2 PE=3 SV=2
Length = 165
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 15 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 74
+ I +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A
Sbjct: 81 LHSIALPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFADFRDVLAREMRSAM 140
Query: 75 P 75
P
Sbjct: 141 P 141
>sp|A3LPQ8|MED10_PICST Mediator of RNA polymerase II transcription subunit 10
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=NUT2 PE=3 SV=2
Length = 146
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 20 VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 75
+P++V YI+ GRNP +YT++ IE N ++KGK+ A+ + + + +L FP
Sbjct: 74 IPVDVISYIEDGRNPDIYTREFIEVTAKSNARLKGKMKAFARLRDVLGEKLGNEFP 129
>sp|Q06213|MED10_YEAST Mediator of RNA polymerase II transcription subunit 10
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NUT2 PE=1 SV=1
Length = 157
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 1 MISGLQ-EIDKL----------KSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKN 49
MI+ LQ +D+L +S + + +PLEV YI+ GRNP +YT++ +E N
Sbjct: 49 MITNLQRNVDRLYKLNVRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSN 108
Query: 50 EQVKGKIDAYRKFKAHMLVELSGAFP 75
+ +GK+ ++ + + ++ FP
Sbjct: 109 QYQRGKMHGLKQLRDSLADKIVDEFP 134
>sp|Q6CVN3|MED10_KLULA Mediator of RNA polymerase II transcription subunit 10
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NUT2 PE=3
SV=1
Length = 161
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 1 MISGLQ-EIDKLK----------SQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKN 49
M++ +Q +D++K SQ+Q+ VPL+V YI+ GRNP +YT++ +E N
Sbjct: 47 MVTNMQRNVDRMKQLNQQANDPESQLQNFLVPLDVLQYIEDGRNPDVYTREFVEAIRRSN 106
Query: 50 EQVKGKIDAYRKFKAHMLVELSGAFP 75
+ + KI K + + ++ P
Sbjct: 107 QYQRAKIHGLNKLRDSLAEKIIDELP 132
>sp|Q6FQ75|MED10_CANGA Mediator of RNA polymerase II transcription subunit 10 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NUT2 PE=3 SV=1
Length = 199
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 12 KSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELS 71
+S ++D++VPLEV YI+ GRNP +YT++ +E N+ + K+ + + ++
Sbjct: 74 QSALKDVNVPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRAKMHGMGMLRDSLAEKIK 133
Query: 72 GAFP 75
FP
Sbjct: 134 EQFP 137
>sp|Q6BWK1|MED10_DEBHA Mediator of RNA polymerase II transcription subunit 10
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=NUT2 PE=3 SV=1
Length = 147
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 20 VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 75
+P++V YI+ GRNP +YT++ +E N ++KGK+ ++K + + +L FP
Sbjct: 74 IPVDVISYIEDGRNPDVYTREFVEVTAKSNARLKGKMLGFQKLRDVLGDKLGKEFP 129
>sp|Q2H8S0|MED10_CHAGB Mediator of RNA polymerase II transcription subunit 10
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=NUT2 PE=3 SV=1
Length = 167
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 11 LKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVEL 70
L + D +P + Y++ GRNP +YT++ E N+ +GK+ A+R F+ + E+
Sbjct: 64 LPTPTADKPIPEPLIQYVENGRNPDIYTREFAELVRRMNQLARGKMHAFRDFRDVLAREM 123
Query: 71 SGAFP 75
A P
Sbjct: 124 ESALP 128
>sp|Q5A3K2|MED10_CANAL Mediator of RNA polymerase II transcription subunit 10 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=NUT2 PE=3
SV=1
Length = 170
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 20 VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 75
+P++V YI+ GRNP +YT++ IE N ++KGK+ ++K + +L FP
Sbjct: 82 IPIDVISYIEDGRNPDIYTREFIEVNAKSNARLKGKMLGFKKLRDVFGDKLKQEFP 137
>sp|Q4PDA7|MED10_USTMA Mediator of RNA polymerase II transcription subunit 10 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=NUT2 PE=3 SV=1
Length = 197
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 2 ISGLQEIDKLKSQVQDIH--VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 59
I L +D K ++ H +P +V + +D G+NP ++T++ + + ++N+ G+ A
Sbjct: 109 IQALAALDATKDELHRAHMMIPQDVLEMLDTGKNPDIHTRNFVNRLASENQYSYGQHRAV 168
Query: 60 RKFKAHMLVELSGAFP 75
++KA + L AFP
Sbjct: 169 ERYKATLDAALDQAFP 184
>sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription subunit 10
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=NUT2 PE=3 SV=1
Length = 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 3 SGLQEIDKLKSQVQDIHV--PLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
S +Q + KL IHV P E+ Y++ RNP +Y ++ +E N+ +KG+ +A +
Sbjct: 33 SLIQNLVKLSRTAPAIHVLIPPEIVMYVEGSRNPDIYNREFVETVQRMNQMLKGRSEALQ 92
Query: 61 KFKAHMLVELSGAFP 75
+A + +L A P
Sbjct: 93 ALQAQIAHQLQIAIP 107
>sp|P87310|MED10_SCHPO Mediator of RNA polymerase II transcription subunit 10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med10 PE=1 SV=2
Length = 144
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 1 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60
+I L+ + + +V ++ +P +V +YI+QGRNP +Y + E N+ V GK+ A
Sbjct: 51 LIRDLKSLPDISRKVNNL-IPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIE 109
Query: 61 KFKAHMLVELSGAFP 75
F+ E+ A+P
Sbjct: 110 GFQKAFAEEIKQAYP 124
>sp|Q8Y236|RUVB_RALSO Holliday junction ATP-dependent DNA helicase RuvB OS=Ralstonia
solanacearum (strain GMI1000) GN=ruvB PE=3 SV=1
Length = 357
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 58 AYRKFKAHMLVELSGAFPNELAKYRAIREKALTK---NEQVKGKIDAY 102
A + A L+ S A PNE A RA+R K L + E+V+G++D +
Sbjct: 8 AAKAVSAERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIF 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,159,335
Number of Sequences: 539616
Number of extensions: 1873102
Number of successful extensions: 5267
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 5193
Number of HSP's gapped (non-prelim): 105
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)