Query psy6385
Match_columns 137
No_of_seqs 133 out of 152
Neff 4.2
Searched_HMMs 29240
Date Sat Aug 17 01:06:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w9y_A CE-FAR-7, fatty acid/re 80.8 3.8 0.00013 30.9 5.9 98 19-119 15-137 (140)
2 1s94_A S-syntaxin; three helix 69.0 28 0.00097 25.5 8.1 87 42-129 45-147 (180)
3 3kxe_C Antitoxin protein PARD- 61.0 26 0.00088 23.9 6.0 57 12-76 3-65 (88)
4 3q5d_A Atlastin-1; G protein, 58.5 61 0.0021 27.8 9.2 73 45-117 350-429 (447)
5 4ido_A Atlastin-1; GTPase, GTP 57.6 22 0.00076 30.9 6.4 88 30-120 338-432 (457)
6 3lqh_A Histone-lysine N-methyl 48.4 20 0.00068 27.5 4.1 62 59-120 107-168 (183)
7 2gv5_C SFI1P; centrin, CDC31P, 45.5 33 0.0011 23.3 4.4 32 35-67 35-66 (73)
8 2p0t_A UPF0307 protein pspto_4 40.9 89 0.003 24.0 6.8 57 12-69 40-118 (176)
9 1ez3_A Syntaxin-1A; three heli 40.2 84 0.0029 21.3 11.3 85 42-127 14-114 (127)
10 1q5z_A SIPA, SIPA; cell invasi 37.2 38 0.0013 25.8 4.1 41 58-105 74-116 (177)
11 2f6m_B Vacuolar protein sortin 32.9 32 0.0011 24.7 2.9 39 8-47 28-68 (109)
12 3hl6_A Pathogenicity island pr 30.7 10 0.00034 30.2 -0.1 80 22-115 127-206 (225)
13 2np0_B Synaptotagmin-2; botuli 30.3 34 0.0012 18.5 2.1 21 97-118 3-23 (26)
14 2wqi_A Tumor protein P73; tumo 29.3 71 0.0024 20.2 3.7 27 98-126 16-43 (51)
15 1ylx_A Hypothetical protein AP 29.0 29 0.001 24.9 2.1 20 106-125 9-28 (103)
16 3ip4_B Aspartyl/glutamyl-tRNA( 29.0 1.1E+02 0.0038 26.8 6.2 107 8-116 352-475 (483)
17 2caz_B Vacuolar protein sortin 28.8 32 0.0011 26.3 2.4 39 8-47 45-85 (155)
18 2dk5_A DNA-directed RNA polyme 28.1 31 0.001 23.3 2.0 39 22-60 23-61 (91)
19 2ff4_A Probable regulatory pro 27.7 1.4E+02 0.0049 24.1 6.4 63 71-134 198-261 (388)
20 3l34_A Sensor protein; two-com 27.7 1.8E+02 0.0062 21.4 6.3 21 96-116 95-115 (130)
21 3h36_A Polyribonucleotide nucl 27.1 1.2E+02 0.0041 19.8 4.9 22 55-76 37-58 (93)
22 1gmj_A ATPase inhibitor; coile 26.7 43 0.0015 23.2 2.6 17 99-115 39-55 (84)
23 3g06_A SSPH2 (leucine-rich rep 26.2 67 0.0023 28.1 4.3 30 88-117 575-604 (622)
24 2yy0_A C-MYC-binding protein; 26.1 1.2E+02 0.0041 18.7 4.5 33 39-71 18-50 (53)
25 3fst_A 5,10-methylenetetrahydr 26.0 57 0.002 26.5 3.7 34 2-36 214-248 (304)
26 1xou_A ESPA; coiled coil, heli 25.3 15 0.00051 29.1 0.0 16 18-33 101-116 (192)
27 3vyw_A MNMC2; tRNA wobble urid 24.9 28 0.00094 28.8 1.5 17 31-47 198-214 (308)
28 2p22_B Vacuolar protein sortin 23.8 32 0.0011 25.1 1.5 38 8-46 37-76 (118)
29 1fio_A SSO1 protein; four heli 23.6 2.1E+02 0.0071 20.6 9.8 84 42-128 11-104 (196)
30 2pih_A Protein YMCA; regulate 23.5 2.1E+02 0.0073 20.6 7.8 79 42-122 32-114 (151)
31 2dnx_A Syntaxin-12; snare, HAB 23.3 2E+02 0.0068 20.3 8.4 63 40-104 14-76 (130)
32 3ijd_A Uncharacterized protein 22.6 1.7E+02 0.0058 24.1 5.9 88 2-112 221-308 (315)
33 2p0l_A Lipoate-protein ligase 21.2 32 0.0011 27.3 1.2 43 58-100 230-277 (288)
34 2nrk_A Hypothetical protein GR 20.3 2.3E+02 0.0079 20.9 5.8 47 59-113 117-163 (173)
No 1
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=80.80 E-value=3.8 Score=30.91 Aligned_cols=98 Identities=10% Similarity=0.153 Sum_probs=70.5
Q ss_pred CChHHHHHHHhc------------CCCCchhH--HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchH-------H
Q psy6385 19 HVPLEVFDYIDQ------------GRNPQLYT--KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPN-------E 77 (137)
Q Consensus 19 ~IPlEVl~yID~------------GrNPDiYT--refvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPe-------l 77 (137)
-||-||+++..+ .+|-+-|+ .+++...-.++.-.-.|++ .+|+.|...|..-=|| +
T Consensus 15 ~iP~ev~~f~~~Lt~eeK~~Lkev~kn~~~f~~e~e~i~alK~KSp~L~~K~~---~l~~~lk~Ki~~L~Peak~Fv~kl 91 (140)
T 2w9y_A 15 FFPTEQLEFSSSITADEKPVLHEVFQKHSCFSQCGEMIDEVSKKHPELGKRLA---TVLEGNKKRLDGLSPAAVEYAKKL 91 (140)
T ss_dssp TCCHHHHHHHHHCCTTTHHHHHHHHTTCCC----TTHHHHHHHHCHHHHHHHH---HHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred HCcHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHhCHHHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 589999987643 56777776 3478888888888888876 5677788777766666 4
Q ss_pred HHHHHHHHhhhhhhh----hhccchHHHHHHHHHHHHHHHHhhChH
Q psy6385 78 LAKYRAIREKALTKN----EQVKGKIDAYRKFKAHMLVELSGAFPN 119 (137)
Q Consensus 78 ~~~y~~ireraLakN----~~~~gk~~~~~~~r~~l~~el~~~fp~ 119 (137)
.+.++.++...++-. ..+++-+++|+.|-.-.=+||..+||.
T Consensus 92 i~~~r~l~~~~~~G~k~~~~~lK~~~~~ykaLS~~aK~dL~k~FP~ 137 (140)
T 2w9y_A 92 IHMVTTTLCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALRKNNPD 137 (140)
T ss_dssp HHHHHHHHHHHHHTCCCCTHHHHHHHHHHHTSCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCcC
Confidence 556666665533322 346778899999999999999999995
No 2
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=68.99 E-value=28 Score=25.52 Aligned_cols=87 Identities=13% Similarity=0.224 Sum_probs=58.6
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhhhhhhhhccchHHHHHH----------------H
Q psy6385 42 IEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRK----------------F 105 (137)
Q Consensus 42 vE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPel~~~y~~ireraLakN~~~~gk~~~~~~----------------~ 105 (137)
|+.+...-+..+..+..++.+...+... ....+.+......+..........+++++..++. .
T Consensus 45 v~~I~~~i~~i~~~v~~l~~~~~~~L~~-~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Ri 123 (180)
T 1s94_A 45 VEEIRAMIDKISDNVDAVKKKHSDILSA-PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRI 123 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHH
Confidence 4556667777777777777766554332 2345556677777777777777888888888774 4
Q ss_pred HHHHHHHHHhhChHHHHHHhHhhC
Q psy6385 106 KAHMLVELSGAFPNELAKYRAIRG 129 (137)
Q Consensus 106 r~~l~~el~~~fp~~~~~yr~ir~ 129 (137)
|+-...=|...|=+-|..|+.++.
T Consensus 124 r~~q~~~L~~kf~~~m~~yq~~q~ 147 (180)
T 1s94_A 124 RKTQYSTISRKFVEVMSDYNTTQI 147 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888889999988764
No 3
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=60.98 E-value=26 Score=23.92 Aligned_cols=57 Identities=7% Similarity=0.077 Sum_probs=42.9
Q ss_pred hhhcCCCCChHHHHHHHhc------CCCCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchH
Q psy6385 12 KSQVQDIHVPLEVFDYIDQ------GRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPN 76 (137)
Q Consensus 12 k~~~~~i~IPlEVl~yID~------GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPe 76 (137)
...+ +|.+|.++..+||+ ..|..-+-|+-|.......+ .+..+|..|.+.+.+..|+
T Consensus 3 ~~~~-sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~-------~l~~Lr~~l~~G~~Sg~~~ 65 (88)
T 3kxe_C 3 SKNT-SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEA-------KLAALRAALIEGEESGFIE 65 (88)
T ss_dssp --CE-EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTCEES
T ss_pred Ccee-eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHCCCCC
Confidence 3444 68999999998874 45788888888877766532 3567899999999998886
No 4
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=58.48 E-value=61 Score=27.77 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHHHHHhhch-----HHHHHHHHHHhhhhhhhhhcc--chHHHHHHHHHHHHHHHHhhC
Q psy6385 45 ALTKNEQVKGKIDAYRKFKAHMLVELSGAFP-----NELAKYRAIREKALTKNEQVK--GKIDAYRKFKAHMLVELSGAF 117 (137)
Q Consensus 45 ~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FP-----el~~~y~~ireraLakN~~~~--gk~~~~~~~r~~l~~el~~~f 117 (137)
+..+.+-....-+|+..|...+.+.+...+| ++.+.....+..++.--.... |.-|...+++..|-++|.+.|
T Consensus 350 ~~a~~~~~~a~~~A~~~Y~~~m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~~~~~~L~~~l~~~~ 429 (447)
T 3q5d_A 350 ATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELY 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445555667778888999988887755554 578888888888887666544 455677788877777777654
No 5
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=57.57 E-value=22 Score=30.93 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=61.6
Q ss_pred cCCCCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhch-----HHHHHHHHHHhhhhhhhhhcc--chHHHH
Q psy6385 30 QGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP-----NELAKYRAIREKALTKNEQVK--GKIDAY 102 (137)
Q Consensus 30 ~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FP-----el~~~y~~ireraLakN~~~~--gk~~~~ 102 (137)
.|.=|.+=+ +-.+..+++......+|++.|...+.+.+...+| ++.+..+..+..++.-=...+ |.-|..
T Consensus 338 ~g~vP~~es---a~~a~ae~en~~Av~~A~~~Y~~~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~ 414 (457)
T 4ido_A 338 GEELPHPKS---MLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFS 414 (457)
T ss_dssp SSSSCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred CCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 355554432 2334455666788888999999998888876677 356777777777776555443 666778
Q ss_pred HHHHHHHHHHHHhhChHH
Q psy6385 103 RKFKAHMLVELSGAFPNE 120 (137)
Q Consensus 103 ~~~r~~l~~el~~~fp~~ 120 (137)
.+|+..|.++|++.|=+-
T Consensus 415 ~~~~~~L~~~l~~~~~~~ 432 (457)
T 4ido_A 415 RRYLQQLESEIDELYIQY 432 (457)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999998876443
No 6
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=48.39 E-value=20 Score=27.46 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHhhChHH
Q psy6385 59 YRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNE 120 (137)
Q Consensus 59 ~~~fR~~L~~el~~~FPel~~~y~~ireraLakN~~~~gk~~~~~~~r~~l~~el~~~fp~~ 120 (137)
+...+..|...--....+.++.+..|-..+++-|+...+-.-+=..+|+..++.|++.||.-
T Consensus 107 L~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 107 LEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 34445555555555667788899999988888888776666666679999999999999963
No 7
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell; 3.00A {Saccharomyces cerevisiae}
Probab=45.53 E-value=33 Score=23.26 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q psy6385 35 QLYTKDCIEKALTKNEQVKGKIDAYRKFKAHML 67 (137)
Q Consensus 35 DiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~ 67 (137)
-.||-||+..|-+.++..-+|+- |+.|++.+.
T Consensus 35 ~Fy~~eC~s~A~~~r~~sl~k~~-l~~~~~K~~ 66 (73)
T 2gv5_C 35 CFYTEECNIQAISKRNYQLEKMV-LKKFRERLL 66 (73)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 36899999999999999999984 666666554
No 8
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=40.85 E-value=89 Score=23.98 Aligned_cols=57 Identities=2% Similarity=0.118 Sum_probs=40.9
Q ss_pred hhhcCCCCChHHHHHHHhcCC----------------------CCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHH
Q psy6385 12 KSQVQDIHVPLEVFDYIDQGR----------------------NPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVE 69 (137)
Q Consensus 12 k~~~~~i~IPlEVl~yID~Gr----------------------NPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~e 69 (137)
++++..+++|.++.+.|...+ +|+- -+..++.....++....+.+.++.+|+.|.++
T Consensus 40 ~~ql~klpL~e~L~~Ai~~a~ri~~~earRRQlqyIGKLmR~~D~e~-I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~ 118 (176)
T 2p0t_A 40 ADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLMRDQDQEA-ILVLLDQLDASTRQYNERFHNLERWRDRLIAG 118 (176)
T ss_dssp HHHHTTSCCCHHHHHHHHHGGGCCSHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcccHHHHHHHHHHHHHHHHHHhC
Confidence 455666788888888765422 2332 24667777778888889999999999998864
No 9
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=40.23 E-value=84 Score=21.26 Aligned_cols=85 Identities=11% Similarity=0.211 Sum_probs=53.3
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhhhhhhhhccchHHHHH----------------HH
Q psy6385 42 IEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYR----------------KF 105 (137)
Q Consensus 42 vE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPel~~~y~~ireraLakN~~~~gk~~~~~----------------~~ 105 (137)
|+.+...-..++..++-++.+...++... ...+.+......+..........++++++.++ ..
T Consensus 14 v~~I~~~i~~i~~~v~~l~~~~~~~L~~~-~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Ri 92 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVEEVKRKHSAILASP-NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRI 92 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Confidence 45556666667777777766666554321 23444555666666666666666666666665 35
Q ss_pred HHHHHHHHHhhChHHHHHHhHh
Q psy6385 106 KAHMLVELSGAFPNELAKYRAI 127 (137)
Q Consensus 106 r~~l~~el~~~fp~~~~~yr~i 127 (137)
|.-...=|...|=+.|..|+.+
T Consensus 93 r~~q~~~L~~kf~e~m~~y~~~ 114 (127)
T 1ez3_A 93 RKTQHSTLSRKFVEVMSEYNAT 114 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677778888888888764
No 10
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=37.24 E-value=38 Score=25.83 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhchHHH--HHHHHHHhhhhhhhhhccchHHHHHHH
Q psy6385 58 AYRKFKAHMLVELSGAFPNEL--AKYRAIREKALTKNEQVKGKIDAYRKF 105 (137)
Q Consensus 58 a~~~fR~~L~~el~~~FPel~--~~y~~ireraLakN~~~~gk~~~~~~~ 105 (137)
||..+|..+ .|... ..-....-..+.+|+..|||||++|..
T Consensus 74 afd~lraei-------l~nd~iks~alkaqcsdi~~~~elk~kidtlke~ 116 (177)
T 1q5z_A 74 AFDGLRAEI-------LPNDTIKSAALKAQCSDIDKHPELKAKMETLKEV 116 (177)
T ss_dssp HHHHHHHHH-------SCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHH
T ss_pred hhhhhhhhh-------cCCchHHHHHHHHHhhhcccCHHHHHHHHHHHHH
Confidence 455666543 45533 333344456789999999999999765
No 11
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=32.91 E-value=32 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=28.8
Q ss_pred HHhhhhhcCCCCChHHHHH--HHhcCCCCchhHHHHHHHHHH
Q psy6385 8 IDKLKSQVQDIHVPLEVFD--YIDQGRNPQLYTKDCIEKALT 47 (137)
Q Consensus 8 ld~~k~~~~~i~IPlEVl~--yID~GrNPDiYTrefvE~~~~ 47 (137)
.|.++.-+ .|-+-+|-|+ ||.+.-.|.-||..|-....+
T Consensus 28 ye~LAelY-SII~tle~LEkAyikD~It~~eYt~~c~rLL~Q 68 (109)
T 2f6m_B 28 IETLSEIY-SIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQ 68 (109)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHhHHHHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 45555555 3566677776 999999999999999877543
No 12
>3hl6_A Pathogenicity island protein; unknown functio; 2.50A {Staphylococcus aureus subsp}
Probab=30.68 E-value=10 Score=30.23 Aligned_cols=80 Identities=18% Similarity=0.380 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhhhhhhhhccchHHH
Q psy6385 22 LEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDA 101 (137)
Q Consensus 22 lEVl~yID~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPel~~~y~~ireraLakN~~~~gk~~~ 101 (137)
-++++|++.|-|- +-+|.++.+|.-+-|-|+.+= .|+..|-+--||+++..+-+++= ..|+ +..-|-
T Consensus 127 sDmF~y~~~~fn~-----delegvQssNaDVigniE~LY----QlATGINEPa~ELVeGLKlvTeF--vQ~e--~A~~dD 193 (225)
T 3hl6_A 127 SDVFKCLENGFDT-----DTLEGIQSSNTDVIANIEMLY----QLATGINEPVPELVEGLKLVTEF--VQDE--NATQED 193 (225)
T ss_dssp ------------------------CCCSCCHHHHHHHHH----HHHTTCSSCCHHHHHHHHHHHHH--HSCS--SCCHHH
T ss_pred chHHHHHhcCCCh-----hhhccccccCcchhhhHHHHH----HHHhcCCCCcHHHHHHHHHHHHH--Hhcc--ccchhh
Confidence 3567788877654 568999999999999999873 57899999999999999888753 3333 334567
Q ss_pred HHHHHHHHHHHHHh
Q psy6385 102 YRKFKAHMLVELSG 115 (137)
Q Consensus 102 ~~~~r~~l~~el~~ 115 (137)
||.|-+. |+||.+
T Consensus 194 ~KaL~~k-L~eLK~ 206 (225)
T 3hl6_A 194 YKALERK-LNDLKA 206 (225)
T ss_dssp HHHHHHH-HHHHHH
T ss_pred HHHHHHH-HHHHHH
Confidence 7776655 356653
No 13
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=30.30 E-value=34 Score=18.45 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHhhCh
Q psy6385 97 GKIDAYRKFKAHMLVELSGAFP 118 (137)
Q Consensus 97 gk~~~~~~~r~~l~~el~~~fp 118 (137)
|+-|.|++.+.-.++|| +..|
T Consensus 3 ~~~d~~~~~k~kf~nel-~kip 23 (26)
T 2np0_B 3 SQEDMFAKLKEKFFNEI-NKXX 23 (26)
T ss_pred CcchHHHHHHHHHHHHH-Hhhh
Confidence 56788999998888988 5554
No 14
>2wqi_A Tumor protein P73; tumor suppression, transcription factor, tetramer, oligomerization domain, DNA-binding, cooperativity, transcription; 1.70A {Homo sapiens} PDB: 2wtt_A 2kby_A 2wqj_A
Probab=29.34 E-value=71 Score=20.24 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCh-HHHHHHhH
Q psy6385 98 KIDAYRKFKAHMLVELSGAFP-NELAKYRA 126 (137)
Q Consensus 98 k~~~~~~~r~~l~~el~~~fp-~~~~~yr~ 126 (137)
.=+|++|++-.| ||.+..| .++++||.
T Consensus 16 ~yEml~ki~esL--EL~e~~p~~~~~~yrq 43 (51)
T 2wqi_A 16 NFEILMKLKESL--ELMELVPQPLVDSYRQ 43 (51)
T ss_dssp HHHHHHHHHHHH--HHGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHhCcHHHHHHHHH
Confidence 358999998877 7887777 47889986
No 15
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=28.97 E-value=29 Score=24.92 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhChHHHHHHh
Q psy6385 106 KAHMLVELSGAFPNELAKYR 125 (137)
Q Consensus 106 r~~l~~el~~~fp~~~~~yr 125 (137)
|..+|+||...|++-|+.|-
T Consensus 9 Re~ii~el~~~~~~~l~~Yg 28 (103)
T 1ylx_A 9 RSVVIEEFIDTLEPMMEAYG 28 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 77899999999999999993
No 16
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=28.96 E-value=1.1e+02 Score=26.85 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=62.8
Q ss_pred HHhhhhhcCCCCChH----HHHHHHhcCCCCchhHHHHHHHHHHHhHHHhhHHHHH--------HHHHHHHHHHHHhhch
Q psy6385 8 IDKLKSQVQDIHVPL----EVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY--------RKFKAHMLVELSGAFP 75 (137)
Q Consensus 8 ld~~k~~~~~i~IPl----EVl~yID~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~--------~~fR~~L~~el~~~FP 75 (137)
|.+..-.+.+..|++ +++..|++|+=-.---|+.++.....+.-..--++.. ..+.. +.+++-++-|
T Consensus 352 ln~~~~~i~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p~~iVee~GL~qisD~~eLe~-iV~eVIa~np 430 (483)
T 3ip4_B 352 LNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLK-FVNEALDNNE 430 (483)
T ss_dssp HHHTTCCGGGSSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCCHHHHHHTTTCCCBCCHHHHHH-HHHHHHHHCH
T ss_pred HhhCCCCHHhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHhcCCccCCCHHHHHH-HHHHHHHHCH
Confidence 333333344455655 4567888888777777888887776532222112111 12333 3445555689
Q ss_pred HHHHHHHHHHhhhhh-----hhhhccchHHHHHHHHHHHHHHHHhh
Q psy6385 76 NELAKYRAIREKALT-----KNEQVKGKIDAYRKFKAHMLVELSGA 116 (137)
Q Consensus 76 el~~~y~~ireraLa-----kN~~~~gk~~~~~~~r~~l~~el~~~ 116 (137)
+.++.|+.-..+++. ==+.++||.|.= ..+..|.++|.+.
T Consensus 431 ~~v~~~k~GK~ka~gfLVGQVMK~tkGKAdP~-~VnelL~e~L~~~ 475 (483)
T 3ip4_B 431 QSVEDYKNGKGKAMGFLVGQIMKASKGQANPQ-LVNQLLKQELDKR 475 (483)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTTSCBCHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHhH
Confidence 999999876554442 124678888764 6677777777654
No 17
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=28.78 E-value=32 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHhhhhhcCCCCChHHHHH--HHhcCCCCchhHHHHHHHHHH
Q psy6385 8 IDKLKSQVQDIHVPLEVFD--YIDQGRNPQLYTKDCIEKALT 47 (137)
Q Consensus 8 ld~~k~~~~~i~IPlEVl~--yID~GrNPDiYTrefvE~~~~ 47 (137)
.|.++.-+ -|-+-+|-|+ ||.+.-.+.-||..|-....+
T Consensus 45 yE~LAeLY-SII~tLE~LEKAYikD~It~~eYT~aC~rLL~Q 85 (155)
T 2caz_B 45 IETLSEIY-SIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQ 85 (155)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 45555555 3556677776 899999999999999877543
No 18
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=28.09 E-value=31 Score=23.26 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHhHHHhhHHHHHH
Q psy6385 22 LEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 60 (137)
Q Consensus 22 lEVl~yID~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~ 60 (137)
.-|+.+|.+..|+.+++++.-+.+--....+.+-+..+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 457899999999999999999888888777777766653
No 19
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=27.68 E-value=1.4e+02 Score=24.11 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=43.4
Q ss_pred HhhchHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHhhC-hHHHHHHhHhhCCCCCC
Q psy6385 71 SGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAF-PNELAKYRAIRGGDETP 134 (137)
Q Consensus 71 ~~~FPel~~~y~~ireraLakN~~~~gk~~~~~~~r~~l~~el~~~f-p~~~~~yr~ir~~~~~~ 134 (137)
....|--...|..+. .++.+.-....=.+.|..+|+.|-+||+-.- |.-.+.|+.|...+++.
T Consensus 198 ~~~~P~~E~~~~~lm-~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~~~~~ 261 (388)
T 2ff4_A 198 TFEHPYREPLWTQLI-TAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLD 261 (388)
T ss_dssp HHHSTTCHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTCCCC
T ss_pred HHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCC
Confidence 344443333343333 5667777777788999999999999998654 55568899988765443
No 20
>3l34_A Sensor protein; two-component sensor,structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Pseudomonas aeruginosa} PDB: 3kkb_A 3n24_A
Probab=27.65 E-value=1.8e+02 Score=21.44 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHHHHHHHHhh
Q psy6385 96 KGKIDAYRKFKAHMLVELSGA 116 (137)
Q Consensus 96 ~gk~~~~~~~r~~l~~el~~~ 116 (137)
+...++|-.+|.+|+.+=.++
T Consensus 95 ~~l~e~Fn~lRn~L~d~q~~a 115 (130)
T 3l34_A 95 DGFSEAFNGLRLRLQDLQQLA 115 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999876554
No 21
>3h36_A Polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransfer structural genomics, PSI-2, protein structure initiative; 1.80A {Streptococcus mutans}
Probab=27.08 E-value=1.2e+02 Score=19.76 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchH
Q psy6385 55 KIDAYRKFKAHMLVELSGAFPN 76 (137)
Q Consensus 55 K~~a~~~fR~~L~~el~~~FPe 76 (137)
+-+++..+++.+.+++...||+
T Consensus 37 R~~a~~~ik~~v~~~l~e~~~~ 58 (93)
T 3h36_A 37 SEIATEAVKEHVTAEYEERYAE 58 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhCcc
Confidence 3457777788888887766664
No 22
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.69 E-value=43 Score=23.17 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6385 99 IDAYRKFKAHMLVELSG 115 (137)
Q Consensus 99 ~~~~~~~r~~l~~el~~ 115 (137)
-+.+++||++|++||.+
T Consensus 39 kEqL~~LKkkl~~el~~ 55 (84)
T 1gmj_A 39 KEQLAALKKHKENEISH 55 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667788888888765
No 23
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=26.18 E-value=67 Score=28.10 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.2
Q ss_pred hhhhhhhccchHHHHHHHHHHHHHHHHhhC
Q psy6385 88 ALTKNEQVKGKIDAYRKFKAHMLVELSGAF 117 (137)
Q Consensus 88 aLakN~~~~gk~~~~~~~r~~l~~el~~~f 117 (137)
+.-+...+.|..|+=..+=+.+++|.+|.|
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (622)
T 3g06_A 575 TELRPSGLVGNTDAERTIGARAMESAKKTF 604 (622)
T ss_dssp HTTTTSSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcchHHHHHhHHHHHHHHHHH
Confidence 334666777999999899999999988887
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.13 E-value=1.2e+02 Score=18.75 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Q psy6385 39 KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELS 71 (137)
Q Consensus 39 refvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~ 71 (137)
..=+|....+|+.++-|++.+..=-+.|...|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355789999999999999988776666666654
No 25
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=26.03 E-value=57 Score=26.53 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=27.2
Q ss_pred chhhhhHHhhhhhcCCCCChHHHHHHHhcCCC-Cch
Q psy6385 2 ISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRN-PQL 36 (137)
Q Consensus 2 V~~Lq~ld~~k~~~~~i~IPlEVl~yID~GrN-PDi 36 (137)
|++++.+.++. .+..+.||.++++-++...+ |+-
T Consensus 214 i~s~~~~~~~~-~~~Gv~iP~~l~~~l~~~~dd~~~ 248 (304)
T 3fst_A 214 VSNFKQAKKLA-DMTNVRIPAWMAQMFDGLDDDAET 248 (304)
T ss_dssp CSCHHHHHHHH-HHHTCCCCHHHHHHHTTCTTCHHH
T ss_pred cCCHHHHHHHH-HcCCCcCCHHHHHHHHhcCCCHHH
Confidence 56778888885 56799999999999988765 653
No 26
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=25.26 E-value=15 Score=29.06 Aligned_cols=16 Identities=44% Similarity=0.752 Sum_probs=0.0
Q ss_pred CCChHHHHHHHhcCCC
Q psy6385 18 IHVPLEVFDYIDQGRN 33 (137)
Q Consensus 18 i~IPlEVl~yID~GrN 33 (137)
.++|.|||+||.+.||
T Consensus 101 ~~LP~dVI~Ymrd~~N 116 (192)
T 1xou_A 101 AQLPDEVISYINDPRN 116 (192)
T ss_dssp ----------------
T ss_pred ccCCHHHHHHHHccCC
Confidence 6899999999987554
No 27
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=24.88 E-value=28 Score=28.80 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.2
Q ss_pred CCCCchhHHHHHHHHHH
Q psy6385 31 GRNPQLYTKDCIEKALT 47 (137)
Q Consensus 31 GrNPDiYTrefvE~~~~ 47 (137)
.+||++||.+++..+.+
T Consensus 198 ~kNPeLWs~e~f~~l~~ 214 (308)
T 3vyw_A 198 YKNPELWTLDFLSLIKE 214 (308)
T ss_dssp TTSGGGGSHHHHHHHHT
T ss_pred ccCcccCCHHHHHHHHH
Confidence 89999999999998764
No 28
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=23.79 E-value=32 Score=25.11 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHhhhhhcCCCCChHHHHH--HHhcCCCCchhHHHHHHHHH
Q psy6385 8 IDKLKSQVQDIHVPLEVFD--YIDQGRNPQLYTKDCIEKAL 46 (137)
Q Consensus 8 ld~~k~~~~~i~IPlEVl~--yID~GrNPDiYTrefvE~~~ 46 (137)
.|.++.-+ .|-+-+|-|+ ||.+.-.|.-||..|-....
T Consensus 37 ye~LAeLY-SII~tle~LEKAyikD~It~~eYt~~C~rLL~ 76 (118)
T 2p22_B 37 IETLSEIY-SIVITLDHVEKAYLKDSIDDTQYTNTVDKLLK 76 (118)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHhHHHHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 45555555 3556677775 99999999999999987654
No 29
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=23.59 E-value=2.1e+02 Score=20.61 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=50.7
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhch----HHHHHHHHHHhhhhhhhhhccchHHHHHH------HHHHHHH
Q psy6385 42 IEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP----NELAKYRAIREKALTKNEQVKGKIDAYRK------FKAHMLV 111 (137)
Q Consensus 42 vE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FP----el~~~y~~ireraLakN~~~~gk~~~~~~------~r~~l~~ 111 (137)
++.+...=...+.++..++++-..+. ....+ ++......+...+...-..++.++..++. .|+-...
T Consensus 11 ~~~i~~~i~~i~~~v~~L~~l~~~~l---~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~ 87 (196)
T 1fio_A 11 ISQINRDLDKYDHTINQVDSLHKRLL---TEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAE 87 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 55666666777777777766655422 22222 35556666666666666666666666654 3555556
Q ss_pred HHHhhChHHHHHHhHhh
Q psy6385 112 ELSGAFPNELAKYRAIR 128 (137)
Q Consensus 112 el~~~fp~~~~~yr~ir 128 (137)
=|...|=+-+..|+.+.
T Consensus 88 ~L~~~f~~~~~~fq~~Q 104 (196)
T 1fio_A 88 NSRQRFLKLIQDYRIVD 104 (196)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777777777654
No 30
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=23.46 E-value=2.1e+02 Score=20.63 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=57.2
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHhhC
Q psy6385 42 IEKALTKNEQVKGKIDAYRKFKAHMLVELSGA----FPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 117 (137)
Q Consensus 42 vE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~----FPel~~~y~~ireraLakN~~~~gk~~~~~~~r~~l~~el~~~f 117 (137)
.+.....|..++..+..|+.++..+...-... ..+....++.+. +.+..|+.|+-..++...|- .||.++.+..
T Consensus 32 A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~-~~l~~np~V~~y~~Ae~~l~-~LL~~I~~iI 109 (151)
T 2pih_A 32 AEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQ-EELEEIPVIQEFRDSQMEVN-DLLQLVAHTI 109 (151)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHSHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHH-HHHHcCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45678889999999999999999887755433 334455555554 78899999998888887774 4667776665
Q ss_pred hHHHH
Q psy6385 118 PNELA 122 (137)
Q Consensus 118 p~~~~ 122 (137)
=+.|.
T Consensus 110 ~~~I~ 114 (151)
T 2pih_A 110 SNQVT 114 (151)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 54443
No 31
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.34 E-value=2e+02 Score=20.26 Aligned_cols=63 Identities=2% Similarity=0.037 Sum_probs=47.5
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHhhhhhhhhhccchHHHHHH
Q psy6385 40 DCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRK 104 (137)
Q Consensus 40 efvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPel~~~y~~ireraLakN~~~~gk~~~~~~ 104 (137)
...+.+...=+.+++-+.+|+++-..|.. ...-|++-+.+..+++.+-.-=+.++..+--+..
T Consensus 14 ~l~~~is~~I~~In~~vs~l~r~v~~LGT--~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~ 76 (130)
T 2dnx_A 14 SIIQTCSGNIQRISQATAQIKNLMSQLGT--KQDSSKLQENLQQLQHSTNQLAKETNELLKELGS 76 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777777778889999999999988887 5678888888888888776555555555544433
No 32
>3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405}
Probab=22.57 E-value=1.7e+02 Score=24.07 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=53.5
Q ss_pred chhhhhHHhhhhhcCCCCChHHHHHHHhcCCCCchhHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhchHHHHHH
Q psy6385 2 ISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKY 81 (137)
Q Consensus 2 V~~Lq~ld~~k~~~~~i~IPlEVl~yID~GrNPDiYTrefvE~~~~~Nq~~kGK~~a~~~fR~~L~~el~~~FPel~~~y 81 (137)
|++.+.+..+. +..+.||.++++-++...+| + .-|---|.+..++.+..--.-.|| +-
T Consensus 221 i~s~k~~~f~~--~~G~~IP~~l~~~l~~~~d~----~------------~~Gi~~a~e~~~~L~~~~~g~~~p-~G--- 278 (315)
T 3ijd_A 221 CGSTKTLEFMK--WLGISIPRWLENDLMNCEDI----L------------NKSVSLSKSIFNELMEFCLEKGIP-IG--- 278 (315)
T ss_dssp CCSHHHHHHHH--HHTCCCCHHHHHHHHTTCCC----H------------HHHHHHHHHHHHHHHHHHHHHTCC-EE---
T ss_pred cCCHHHHHHHh--cCCCCCCHHHHHHHHhCCCH----H------------HHHHHHHHHHHHHHHHhcCcCCcC-CC---
Confidence 56677777776 77899999999999988764 1 125555555555555543333454 11
Q ss_pred HHHHhhhhhhhhhccchHHHHHHHHHHHHHH
Q psy6385 82 RAIREKALTKNEQVKGKIDAYRKFKAHMLVE 112 (137)
Q Consensus 82 ~~ireraLakN~~~~gk~~~~~~~r~~l~~e 112 (137)
--.|+--++-.++..-++.++.+|+.+--|
T Consensus 279 -~niesv~~rk~ei~as~~l~~~~~~~~~~~ 308 (315)
T 3ijd_A 279 -CNIESVSVRKVEIEASIALAKDIKYIMKGE 308 (315)
T ss_dssp -EEEEECCSCHHHHHHHHHHHHHHHHHC---
T ss_pred -ccHHHHHhHHHHHHHHHHHHHHHHHHhcCC
Confidence 111233355566667788888888776443
No 33
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=21.22 E-value=32 Score=27.34 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhc---hHHHHHHHHH--HhhhhhhhhhccchHH
Q psy6385 58 AYRKFKAHMLVELSGAF---PNELAKYRAI--REKALTKNEQVKGKID 100 (137)
Q Consensus 58 a~~~fR~~L~~el~~~F---Pel~~~y~~i--reraLakN~~~~gk~~ 100 (137)
++..|++.|.+.+.+.| |++.+.+.++ .++...+|+...|++.
T Consensus 230 ~~~~v~~~l~~~f~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (288)
T 2p0l_A 230 TVEDVIDRMLISLKQVGFNDRLLMIRPDLVAEFDRFQAKSMANKGMVS 277 (288)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEECCCCHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35677788888888777 4566778888 8888899998888763
No 34
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, enterococcus FAE PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis} SCOP: d.218.1.14
Probab=20.31 E-value=2.3e+02 Score=20.91 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHH
Q psy6385 59 YRKFKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVEL 113 (137)
Q Consensus 59 ~~~fR~~L~~el~~~FPel~~~y~~ireraLakN~~~~gk~~~~~~~r~~l~~el 113 (137)
.-.|||-|. +.|++...|.+++...-.+.+ ..++.|..=|.-.++++
T Consensus 117 ~L~FRDyLr-----~~p~~~~~Y~~lK~~la~~~~---~d~~~Y~~~K~~fi~~i 163 (173)
T 2nrk_A 117 HLAFRNYLR-----ENPAIATTYGTLKKQLAQAHP---DSIDKYMDGKDAFIKKI 163 (173)
T ss_dssp HHHHHHHHH-----HCHHHHHHHHHHHHHHHTTCS---SCHHHHC--CHHHHHHH
T ss_pred HHHHHHHHH-----hCHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHH
Confidence 347898886 589999999999976665522 23444444444444443
Done!