RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6385
         (137 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 44/125 (35%)

Query: 23   EVFDYIDQGRNPQLYTKDCIEKAL--TKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAK 80
            ++F  I++  +   YT    +  L  T+  Q            A  L+E         A 
Sbjct: 1705 KIFKEINE--HSTSYTFRSEKGLLSATQFTQP-----------ALTLMEK--------AA 1743

Query: 81   YRAIREKALTKNEQVKGKIDAYRKFKA-H------MLVELSGAFPNE----LAKYRAIRG 129
            +  ++          KG I A   F A H       L  L+     E    +  YR +  
Sbjct: 1744 FEDLKS---------KGLIPADATF-AGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793

Query: 130  GDETP 134
                P
Sbjct: 1794 QVAVP 1798


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.8 bits (76), Expect = 0.008
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 10/38 (26%)

Query: 6  QEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIE 43
          Q + KL++ ++ ++         D    P L  K  +E
Sbjct: 20 QALKKLQASLK-LYAD-------DSA--PALAIKATME 47


>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
           hydro; HET: ADP; 2.91A {Escherichia coli}
          Length = 500

 Score = 28.6 bits (64), Expect = 0.69
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 6   QEIDKLKSQVQDIHVPLEVFDYI 28
           +E ++ + ++ +I +P  VF+ I
Sbjct: 212 EEYERWQKEIGEITLPDHVFELI 234


>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
           joint center for struc genomics, JCSG; HET: MSE PG4;
           2.00A {Cytophaga hutchinsonii atcc 33406}
          Length = 331

 Score = 27.5 bits (62), Expect = 1.4
 Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 6   QEIDKLKSQVQDIHVPLEVFDYI----DQGRNPQLYTKDCIEKALT 47
            ++ ++++++  + +   +  YI       R P  Y  +     + 
Sbjct: 213 NDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYIL 258


>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein;
          structural genomics, PSI-2, protein structure
          initiative; HET: MSE PEG; 1.90A {Bacteroides
          thetaiotaomicron}
          Length = 298

 Score = 27.0 bits (59), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 2  ISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRN 33
          I G QE      Q++D+   L  +DYI  GR+
Sbjct: 46 IFGTQEC--FLHQLKDMKEALPGYDYIGVGRD 75


>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A
          {Pseudomonas putida} SCOP: d.58.4.1
          Length = 96

 Score = 25.6 bits (56), Expect = 3.4
 Identities = 10/38 (26%), Positives = 13/38 (34%)

Query: 62 FKAHMLVELSGAFPNELAKYRAIREKALTKNEQVKGKI 99
          F   M V+L        A      EK L +  Q +G  
Sbjct: 3  FHVKMTVKLPVDMDPAKATQLKADEKELAQRLQREGTW 40


>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus}
           SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*
          Length = 208

 Score = 25.0 bits (55), Expect = 8.8
 Identities = 13/56 (23%), Positives = 19/56 (33%)

Query: 7   EIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKF 62
            ID     V+D+HV      Y+        Y K  +   L K E++       R  
Sbjct: 86  YIDMFCEGVRDLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNGRNL 141


>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
          protein structure initiative; 2.00A {Clostridium
          perfringens}
          Length = 241

 Score = 24.8 bits (55), Expect = 9.7
 Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 42 IEKALTKNEQVKGKIDAYRKFKAHM 66
          +EK   K + ++ ++D  R+F   M
Sbjct: 72 LEKEPKKLKNLQCELDWERRF-DGM 95


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,117,670
Number of extensions: 117354
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 17
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)