RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6385
         (137 letters)



>d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 66

 Score = 26.5 bits (58), Expect = 0.42
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 55  KIDAYRKFKAHML-----VELSGAFPNELAKYRAIR-EKALTKNEQVKGKIDAYRKFKAH 108
           K+D YR+   HML     +  SG       +   +  +K L + +++ G +D Y K  A+
Sbjct: 1   KVDLYRRILEHMLSYQFGITWSGKVAGRYPELELLEGKKRLARVDRIYGMLDIYEKIAAY 60

Query: 109 ML 110
           +L
Sbjct: 61  LL 62


>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 442

 Score = 24.5 bits (52), Expect = 5.3
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 6  QEIDKLKSQVQDIHVPLEV-----FDYIDQGRNPQLYTKDCIEKALTKNEQVKGKID 57
           E+D L   V+  H  L        D++     P  Y K+   +     E+++   D
Sbjct: 16 NELDYLSEFVKAAHHMLHERKGPGSDFLGWVDWPIRYDKNEFSRIKQAAERIRNHSD 72


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 24.0 bits (51), Expect = 9.0
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 12/56 (21%)

Query: 75  PNELAKYRAIREKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKY-RAIRG 129
           P+E+      +E    K      K  AY K           A+P E A++ R ++G
Sbjct: 286 PSEIYAQWDAKEAGQAKESAWNEKFAAYAK-----------AYPQEAAEFTRRMKG 330


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,678
Number of extensions: 21693
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 8
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)