BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6386
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 65 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 107
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 94 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 136
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 65 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 107
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 94 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 136
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 65 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 107
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 92 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 65 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 107
E+ +N Q + + +HML EL G FP+ L + R
Sbjct: 92 ERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFR 134
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 61 KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNEL 100
K+ E+ +N Q + + +HML EL G FP+ L
Sbjct: 88 KEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGL 127
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 61 KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNEL 100
K+ E+ +N Q + + +HML EL G FP+ L
Sbjct: 112 KEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGL 151
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 61 KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNEL 100
K+ E+ +N Q + + +HML EL G FP+ L
Sbjct: 88 KEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGL 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,396,945
Number of Sequences: 62578
Number of extensions: 124804
Number of successful extensions: 356
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 14
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)