BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6386
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes
aegypti GN=MED10 PE=3 SV=1
Length = 130
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 83/90 (92%), Gaps = 1/90 (1%)
Query: 21 QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
Q++++GLQEIDKLK+QV D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+
Sbjct: 42 QSLVTGLQEIDKLKNQV-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDS 100
Query: 81 YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
YRKFK++++ EL FP E+AKY+AIRG +
Sbjct: 101 YRKFKSNLMKELDETFPTEIAKYKAIRGDE 130
>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles
gambiae GN=MED10 PE=3 SV=2
Length = 130
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 84/90 (93%), Gaps = 1/90 (1%)
Query: 21 QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
Q++++GLQEIDKLK+Q+ D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+
Sbjct: 42 QSLVTGLQEIDKLKNQI-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDS 100
Query: 81 YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
YRKFK++++ ELS FP E++KY+AIRG +
Sbjct: 101 YRKFKSNLMKELSETFPVEISKYKAIRGDE 130
>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
tropicalis GN=med10 PE=2 SV=1
Length = 135
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
+++GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 LVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
KFK+ ++ ELS FP ++AKY+AIRG D PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAIRGEDH-PPS 135
>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus
laevis GN=med10 PE=2 SV=1
Length = 135
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
++ GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 LVRGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
KFK+ ++ ELS FP ++AKY+A+RG D PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAVRGEDH-PPS 135
>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus
musculus GN=Med10 PE=1 SV=1
Length = 135
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
KFK+ ++ ELS FP ++AKYR+IRG D PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135
>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo
abelii GN=MED10 PE=2 SV=1
Length = 135
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
KFK+ ++ ELS FP ++AKYR+IRG D PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135
>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo
sapiens GN=MED10 PE=1 SV=1
Length = 135
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
KFK+ ++ ELS FP ++AKYR+IRG D PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135
>sp|Q3ZCF2|MED10_BOVIN Mediator of RNA polymerase II transcription subunit 10 OS=Bos
taurus GN=MED10 PE=2 SV=1
Length = 135
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
KFK+ ++ ELS FP ++AKYR+IRG D PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135
>sp|Q0VIA1|MED10_DANRE Mediator of RNA polymerase II transcription subunit 10 OS=Danio
rerio GN=med10 PE=2 SV=1
Length = 134
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 76/93 (81%), Gaps = 2/93 (2%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
MI+GLQ+I+K + Q+ DI+VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID
Sbjct: 44 MITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLT 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
KFK+ ++ EL FP E+AKY+AI G D PPS
Sbjct: 104 KFKSLLISELGKVFPEEMAKYKAIHGDD--PPS 134
>sp|Q4R6W4|MED10_MACFA Mediator of RNA polymerase II transcription subunit 10 OS=Macaca
fascicularis GN=MED10 PE=2 SV=1
Length = 135
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 75/91 (82%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
+++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID +
Sbjct: 44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103
Query: 83 KFKAHMLVELSGAFPNELAKYRAIRGGDETP 113
KFK+ ++ LS FP ++AKYR+IRG D P
Sbjct: 104 KFKSLLIQGLSKVFPEDMAKYRSIRGEDHLP 134
>sp|Q9GYU7|MED10_DROME Mediator of RNA polymerase II transcription subunit 10
OS=Drosophila melanogaster GN=MED10 PE=1 SV=1
Length = 133
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 22 TMISGLQEIDKLKSQVQDIHVPLEVF-DYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
++++GLQEIDKL+SQVQD++VP EVF DYIDQ +NPQLYTKDC+EKAL KNE+VKGKI+
Sbjct: 43 SLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEG 102
Query: 81 YRKFKAHMLVELSGAFPNELAKYRAIR 107
+KFK ++L+EL FPNE+ YRA R
Sbjct: 103 LKKFKTNLLLELYKTFPNEMNNYRAYR 129
>sp|Q61Z20|MED10_CAEBR Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis briggsae GN=mdt-10 PE=3 SV=1
Length = 173
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 62/87 (71%)
Query: 22 TMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 81
T+I GLQ++D++K D +VPL++ Y+D G+NP LY+K C+EK L KN+ V GKI+ Y
Sbjct: 86 TLIRGLQDLDRMKGTFSDKNVPLDILPYLDDGKNPLLYSKHCMEKTLEKNKAVNGKIEMY 145
Query: 82 RKFKAHMLVELSGAFPNELAKYRAIRG 108
+KF+AH++ E S P+ + +YR RG
Sbjct: 146 KKFRAHLIKEFSEEMPDFVIEYRKERG 172
>sp|P45966|MED10_CAEEL Mediator of RNA polymerase II transcription subunit 10
OS=Caenorhabditis elegans GN=mdt-10 PE=3 SV=1
Length = 173
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 61/86 (70%)
Query: 22 TMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 81
T++ GLQ++D++K D VPL++ Y+D G+NP LY+K C+EK L KN+ V GKI+ Y
Sbjct: 82 TLVRGLQDLDRMKGTFSDKKVPLDLLPYLDDGKNPCLYSKHCMEKTLEKNKAVNGKIEIY 141
Query: 82 RKFKAHMLVELSGAFPNELAKYRAIR 107
+KF+AH++ E S P+ + YR+IR
Sbjct: 142 KKFRAHLMKEFSEEMPDLVMYYRSIR 167
>sp|Q9FHZ2|MD10A_ARATH Mediator of RNA polymerase II transcription subunit 10a
OS=Arabidopsis thaliana GN=MED10A PE=1 SV=1
Length = 186
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 5 ILNHLGEYSKFISSFR--------QTMISGLQEIDKLK--SQVQDIHVPLEVFDYIDQGR 54
IL L + +SSF Q + S + E+D + S +I VP+EV + ID G+
Sbjct: 45 ILELLHQLKLTVSSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGK 104
Query: 55 NPQLYTKDCIEK-ALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGG 109
NP +TKD + K + KN+ KGK DA++ + H+L EL AFP+E+ +YR IR
Sbjct: 105 NPDEFTKDVLNKNCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRAS 160
>sp|F4HPA7|MD10B_ARATH Mediator of RNA polymerase II transcription subunit 10b
OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1
Length = 189
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 21 QTMISGLQEIDKLK--SQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKI 78
Q + S + E+D + S+ +I +P+EV + ID G+NP +TKD + + +N+ KGK
Sbjct: 73 QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 132
Query: 79 DAYRKFKAHMLVELSGAFPNELAKYRAIRGG 109
DA++ + H+L EL FP+E+ YR IR
Sbjct: 133 DAFKDLRKHILEELEQNFPDEVDMYREIRAS 163
>sp|Q54GE5|MED10_DICDI Putative mediator of RNA polymerase II transcription subunit 10
OS=Dictyostelium discoideum GN=med10 PE=3 SV=1
Length = 219
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 37 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 96
V D+ +PLE+F IDQ +NP LY K+ ++ L+ NE+ KGKI++ + FK + +S +F
Sbjct: 104 VNDVEIPLEIFRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIKNFKKELESHISESF 163
Query: 97 PNELAKYRAIRGGDET 112
+E A+Y+ + ET
Sbjct: 164 ASEYAEYKLLTQKKET 179
>sp|Q1E0Q7|MED10_COCIM Mediator of RNA polymerase II transcription subunit 10
OS=Coccidioides immitis (strain RS) GN=NUT2 PE=3 SV=3
Length = 163
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 25 SGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKF 84
+GL D VQ I +P E+ DY+D RNP +YT++ +E N+++KGK++A+ F
Sbjct: 71 TGLSPAD---PPVQSIQLPPEIIDYVDAARNPDIYTREFVELVQKSNQELKGKMEAFASF 127
Query: 85 KAHMLVELSGAFPN 98
+ + E++ A P
Sbjct: 128 RDVLAKEMASAMPE 141
>sp|Q4WJH6|MED10_ASPFU Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=nut2 PE=3 SV=1
Length = 159
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 37 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 96
++DI +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A
Sbjct: 77 LRDIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAREMRSAM 136
Query: 97 P---NELAKYRAIRGG 109
P E+ + A GG
Sbjct: 137 PECRGEVERVLAATGG 152
>sp|A1D434|MED10_NEOFI Mediator of RNA polymerase II transcription subunit 10
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=nut2 PE=3 SV=1
Length = 167
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 37 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 96
++DI +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A
Sbjct: 85 LRDIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAREMRSAM 144
Query: 97 PN---ELAKYRAIRGG 109
P E+ + A GG
Sbjct: 145 PECRGEVERVLAATGG 160
>sp|Q6C5P0|MED10_YARLI Mediator of RNA polymerase II transcription subunit 10 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=NUT2 PE=3 SV=1
Length = 143
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 81
M + ++E +LK D +P++V DYIDQGRNP +YT++ +E L +N+ + GK+D Y
Sbjct: 44 MDTLVKEFQRLKEIKCDKQIPIDVIDYIDQGRNPDVYTREFVELLLKQNQFIHGKMDIY 102
>sp|Q0CTF3|MED10_ASPTN Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=nut2 PE=3 SV=1
Length = 155
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 37 VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAF 96
+ I +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A
Sbjct: 76 ISTIELPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFAGFRDVLAREMRSAM 135
Query: 97 P---NELAK-YRAIRGGDET 112
P E+ + RA GG+E+
Sbjct: 136 PECRGEVDRVVRATGGGEES 155
>sp|Q758M1|MED10_ASHGO Mediator of RNA polymerase II transcription subunit 10 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=NUT2 PE=3 SV=2
Length = 151
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%)
Query: 35 SQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSG 94
SQ++++++PLEV YI+ GRNP +YT++ +E N+ + K+ A +K + + ++
Sbjct: 70 SQLRNMNIPLEVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKMHALKKLRDSLAEKIGE 129
Query: 95 AFPNELAKYRAI 106
FP+ + + + I
Sbjct: 130 EFPDLVPQVQGI 141
>sp|Q7RXK7|MED10_NEUCR Mediator of RNA polymerase II transcription subunit 10
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nut-2 PE=3 SV=1
Length = 253
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 10 GEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALT 69
E ++F S+F T + + Q I +PL Y++ GRNP +YT++ IE
Sbjct: 111 AEAAQFASTFNNTHNPYAPHVHQPGPQNPGIPIPL--ITYVENGRNPDVYTREFIELVRR 168
Query: 70 KNEQVKGKIDAYRKFKAHMLVELSGAFP 97
N+ ++GK+ A+R F+ + E+ A P
Sbjct: 169 SNQLMRGKMHAFRDFRDVLAGEMEAALP 196
>sp|A1CR70|MED10_ASPCL Mediator of RNA polymerase II transcription subunit 10
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=nut2 PE=3 SV=1
Length = 167
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 31 DKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLV 90
D + I +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ +
Sbjct: 82 DNPDPPLSSIQLPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFASFRDVLAR 141
Query: 91 ELSGAFP 97
E+ A P
Sbjct: 142 EMRSAMP 148
>sp|Q5B5I6|MED10_EMENI Mediator of RNA polymerase II transcription subunit 10
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=nut2 PE=3 SV=2
Length = 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 40 IHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 97
I +P E+ DY+D RNP +YT++ +E N+ +KGK +A+ F+ + E+ A P
Sbjct: 84 IALPPEIIDYVDAARNPDIYTREFVELVQRGNQDLKGKKEAFADFRDVLAREMRSAMP 141
>sp|Q2H8S0|MED10_CHAGB Mediator of RNA polymerase II transcription subunit 10
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=NUT2 PE=3 SV=1
Length = 167
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 2 IIHILNHLGEYSKFISSFRQTMISGLQEIDK-----------LKSQVQDIHVPLEVFDYI 50
+ +L + Y R + +Q +DK L + D +P + Y+
Sbjct: 22 LFQVLVQVSNYDAAGRPTRDVLAQDIQTLDKTLHTLHTNAQHLPTPTADKPIPEPLIQYV 81
Query: 51 DQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGG 109
+ GRNP +YT++ E N+ +GK+ A+R F+ + E+ A P A + + G
Sbjct: 82 ENGRNPDIYTREFAELVRRMNQLARGKMHAFRDFRDVLAREMESALPELRADVQMVVGA 140
>sp|A3LPQ8|MED10_PICST Mediator of RNA polymerase II transcription subunit 10
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=NUT2 PE=3 SV=2
Length = 146
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 42 VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 97
+P++V YI+ GRNP +YT++ IE N ++KGK+ A+ + + + +L FP
Sbjct: 74 IPVDVISYIEDGRNPDIYTREFIEVTAKSNARLKGKMKAFARLRDVLGEKLGNEFP 129
>sp|Q5A3K2|MED10_CANAL Mediator of RNA polymerase II transcription subunit 10 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=NUT2 PE=3
SV=1
Length = 170
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 9 LGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKAL 68
+ + ++ IS QT + + + + ++ +P++V YI+ GRNP +YT++ IE
Sbjct: 50 MNKLNQLISQLSQTSTTA-NDPNDANTNLKQFLIPIDVISYIEDGRNPDIYTREFIEVNA 108
Query: 69 TKNEQVKGKIDAYRKFKAHMLVELSGAFP 97
N ++KGK+ ++K + +L FP
Sbjct: 109 KSNARLKGKMLGFKKLRDVFGDKLKQEFP 137
>sp|Q06213|MED10_YEAST Mediator of RNA polymerase II transcription subunit 10
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NUT2 PE=1 SV=1
Length = 157
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 23 MISGLQ-EIDKL----------KSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKN 71
MI+ LQ +D+L +S + + +PLEV YI+ GRNP +YT++ +E N
Sbjct: 49 MITNLQRNVDRLYKLNVRSNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSN 108
Query: 72 EQVKGKIDAYRKFKAHMLVELSGAFP 97
+ +GK+ ++ + + ++ FP
Sbjct: 109 QYQRGKMHGLKQLRDSLADKIVDEFP 134
>sp|Q6CVN3|MED10_KLULA Mediator of RNA polymerase II transcription subunit 10
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NUT2 PE=3
SV=1
Length = 161
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 21 QTMISGLQE-IDKLK----------SQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALT 69
Q M++ +Q +D++K SQ+Q+ VPL+V YI+ GRNP +YT++ +E
Sbjct: 45 QGMVTNMQRNVDRMKQLNQQANDPESQLQNFLVPLDVLQYIEDGRNPDVYTREFVEAIRR 104
Query: 70 KNEQVKGKIDAYRKFKAHMLVELSGAFP 97
N+ + KI K + + ++ P
Sbjct: 105 SNQYQRAKIHGLNKLRDSLAEKIIDELP 132
>sp|Q6BWK1|MED10_DEBHA Mediator of RNA polymerase II transcription subunit 10
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=NUT2 PE=3 SV=1
Length = 147
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 42 VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 97
+P++V YI+ GRNP +YT++ +E N ++KGK+ ++K + + +L FP
Sbjct: 74 IPVDVISYIEDGRNPDVYTREFVEVTAKSNARLKGKMLGFQKLRDVLGDKLGKEFP 129
>sp|Q6FQ75|MED10_CANGA Mediator of RNA polymerase II transcription subunit 10 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NUT2 PE=3 SV=1
Length = 199
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 34 KSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELS 93
+S ++D++VPLEV YI+ GRNP +YT++ +E N+ + K+ + + ++
Sbjct: 74 QSALKDVNVPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRAKMHGMGMLRDSLAEKIK 133
Query: 94 GAFP 97
FP
Sbjct: 134 EQFP 137
>sp|P87310|MED10_SCHPO Mediator of RNA polymerase II transcription subunit 10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med10 PE=1 SV=2
Length = 144
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 22 TMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 81
T+I L+ + + +V ++ +P +V +YI+QGRNP +Y + E N+ V GK+ A
Sbjct: 50 TLIRDLKSLPDISRKVNNL-IPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAI 108
Query: 82 RKFKAHMLVELSGAFP 97
F+ E+ A+P
Sbjct: 109 EGFQKAFAEEIKQAYP 124
>sp|Q4PDA7|MED10_USTMA Mediator of RNA polymerase II transcription subunit 10 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=NUT2 PE=3 SV=1
Length = 197
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 24 ISGLQEIDKLKSQVQDIH--VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 81
I L +D K ++ H +P +V + +D G+NP ++T++ + + ++N+ G+ A
Sbjct: 109 IQALAALDATKDELHRAHMMIPQDVLEMLDTGKNPDIHTRNFVNRLASENQYSYGQHRAV 168
Query: 82 RKFKAHMLVELSGAFP 97
++KA + L AFP
Sbjct: 169 ERYKATLDAALDQAFP 184
>sp|Q0U8U9|MED10_PHANO Mediator of RNA polymerase II transcription subunit 10
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=NUT2 PE=3 SV=1
Length = 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 7 NHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHV--PLEVFDYIDQGRNPQLYTKDCI 64
+H G ++ + ++ + S +Q + KL IHV P E+ Y++ RNP +Y ++ +
Sbjct: 17 DHRGSPTQ--EAMKREIQSLIQNLVKLSRTAPAIHVLIPPEIVMYVEGSRNPDIYNREFV 74
Query: 65 EKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 97
E N+ +KG+ +A + +A + +L A P
Sbjct: 75 ETVQRMNQMLKGRSEALQALQAQIAHQLQIAIP 107
>sp|O36966|POLN_DCVEB Replicase polyprotein OS=Drosophila C virus (strain EB) GN=ORF1 PE=4
SV=1
Length = 1759
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 17 SSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYT 60
++FR+ + G +E DKL+S V + VP E+ NPQ+ T
Sbjct: 1704 TAFREVVYHGKEEYDKLRSAVLALKVPQEL------PENPQILT 1741
>sp|Q91YK2|RRP1B_MOUSE Ribosomal RNA processing protein 1 homolog B OS=Mus musculus
GN=Rrp1b PE=2 SV=2
Length = 724
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 2 IIHILNHLGEYSKFISSFRQTMISGLQEIDKLK 34
+IH++N L FI +F QTM Q IDKL+
Sbjct: 81 LIHVVNSLEAQYLFIQTFWQTMNREWQGIDKLQ 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,731,428
Number of Sequences: 539616
Number of extensions: 1572578
Number of successful extensions: 4223
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4179
Number of HSP's gapped (non-prelim): 50
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)