Query psy6386
Match_columns 116
No_of_seqs 101 out of 141
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 16:34:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kxe_C Antitoxin protein PARD- 69.8 8.7 0.0003 25.3 4.8 58 33-98 2-65 (88)
2 2gv5_C SFI1P; centrin, CDC31P, 61.4 14 0.00047 24.1 4.4 32 57-89 35-66 (73)
3 4fi5_A Nucleoprotein; structur 38.7 98 0.0033 21.6 6.1 38 53-93 53-90 (113)
4 2yy0_A C-MYC-binding protein; 38.5 57 0.0019 19.5 4.3 33 61-93 18-50 (53)
5 3sl9_C B-cell CLL/lymphoma 9 p 36.8 28 0.00097 21.2 2.7 22 53-74 4-25 (55)
6 2caz_B Vacuolar protein sortin 35.1 34 0.0011 25.1 3.4 30 40-69 54-85 (155)
7 2hwy_A Protein SMG5; RNA degra 33.1 58 0.002 23.8 4.4 43 20-62 9-52 (164)
8 2akf_A Coronin-1A; coiled coil 32.9 37 0.0013 18.6 2.5 20 18-37 9-29 (32)
9 2p22_B Vacuolar protein sortin 30.9 23 0.00079 24.8 1.8 28 42-69 48-77 (118)
10 3vyw_A MNMC2; tRNA wobble urid 30.5 20 0.00067 28.6 1.5 17 53-69 198-214 (308)
11 2dk5_A DNA-directed RNA polyme 30.4 26 0.00089 22.7 1.9 38 45-82 24-61 (91)
12 2lwd_A Probable ATP-dependent 29.3 76 0.0026 21.1 4.2 61 23-89 10-70 (100)
13 2wus_R RODZ, putative uncharac 29.3 1.1E+02 0.0039 20.0 5.1 30 40-69 30-63 (112)
14 2xe4_A Oligopeptidase B; hydro 26.3 60 0.0021 27.5 3.9 38 61-98 79-116 (751)
15 3fst_A 5,10-methylenetetrahydr 26.1 52 0.0018 25.8 3.3 43 25-68 215-258 (304)
16 1ghh_A DINI, DNA-damage-induci 26.0 45 0.0015 21.7 2.5 20 80-99 17-36 (81)
17 1xou_A ESPA; coiled coil, heli 26.0 14 0.00049 28.0 0.0 17 39-55 100-116 (192)
18 1m1j_C Fibrinogen gamma chain; 24.7 2.9E+02 0.01 22.7 9.4 86 15-107 35-132 (409)
19 3on0_A Protein TRAM; DNA bindi 23.5 2E+02 0.0068 20.4 5.9 50 51-100 56-123 (127)
20 2k48_A Nucleoprotein; viral pr 22.8 1.9E+02 0.0066 19.9 6.2 38 53-93 66-103 (107)
21 3cz6_A DNA-binding protein RAP 22.6 99 0.0034 22.9 4.0 33 39-71 91-129 (168)
22 3brv_B NF-kappa-B essential mo 21.3 1.6E+02 0.0054 18.9 4.3 27 62-88 19-45 (70)
23 1x46_A Globin chain, hemoglobi 21.0 1.4E+02 0.0048 19.9 4.4 41 56-97 85-125 (150)
24 2bnk_A Early protein GP16.7; D 20.9 47 0.0016 21.0 1.7 14 38-51 19-32 (67)
25 2qy6_A UPF0209 protein YFCK; s 20.5 38 0.0013 25.6 1.4 18 53-70 185-202 (257)
No 1
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=69.77 E-value=8.7 Score=25.33 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=43.6
Q ss_pred hhhhcCCCCCchHHHHHHhc------CCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhChh
Q psy6386 33 LKSQVQDIHVPLEVFDYIDQ------GRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPN 98 (116)
Q Consensus 33 ~a~~~~~~~IP~eVl~yID~------GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe 98 (116)
|+..+ +|.+|.++..+||+ ..|..-+-|+.|.......+ .++.+|..|.+.+.+..|+
T Consensus 2 m~~~~-sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~-------~l~~Lr~~l~~G~~Sg~~~ 65 (88)
T 3kxe_C 2 ASKNT-SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEA-------KLAALRAALIEGEESGFIE 65 (88)
T ss_dssp ---CE-EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTCEES
T ss_pred CCcee-eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHCCCCC
Confidence 34455 88999999998874 45888888888887776532 3567999999999988776
No 2
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell; 3.00A {Saccharomyces cerevisiae}
Probab=61.41 E-value=14 Score=24.09 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q psy6386 57 QLYTKDCIEKALTKNEQVKGKIDAYRKFKAHML 89 (116)
Q Consensus 57 diyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~ 89 (116)
--||-||.+.|-+.++..-+|+- |+.|++.+.
T Consensus 35 ~Fy~~eC~s~A~~~r~~sl~k~~-l~~~~~K~~ 66 (73)
T 2gv5_C 35 CFYTEECNIQAISKRNYQLEKMV-LKKFRERLL 66 (73)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35899999999999999999984 777776654
No 3
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=38.74 E-value=98 Score=21.58 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Q psy6386 53 GRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELS 93 (116)
Q Consensus 53 GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~ 93 (116)
++|||-..+..+......=.....|+ ..|++.|++..+
T Consensus 53 e~DPDevNK~tl~~R~~~Vs~lq~Ki---aeLKrqLAd~va 90 (113)
T 4fi5_A 53 EKDPDELNKRTLTDREGVAVSIQAKI---DELKRQLADRIA 90 (113)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 78999999999988777666666665 477888888775
No 4
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.53 E-value=57 Score=19.47 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Q psy6386 61 KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELS 93 (116)
Q Consensus 61 re~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~ 93 (116)
..-+|....+|+.++-|++.+..=-+.|..+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455789999999999999998877777777664
No 5
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=36.79 E-value=28 Score=21.18 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=15.3
Q ss_pred CCCcchHHHHHHHHHHHHhHHH
Q psy6386 53 GRNPQLYTKDCIEKALTKNEQV 74 (116)
Q Consensus 53 GrNPdiyTre~vE~~~~~Nq~~ 74 (116)
|.||+-.++|.+|...++=|..
T Consensus 4 ~~n~~gls~eqlehrerslqtl 25 (55)
T 3sl9_C 4 GENPDGLSQEQLEHRERSLQTL 25 (55)
T ss_dssp ---CCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcccCHHHHHHHHHHHHHH
Confidence 6899999999999877765543
No 6
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=35.15 E-value=34 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCchHHHH--HHhcCCCcchHHHHHHHHHHH
Q psy6386 40 IHVPLEVFD--YIDQGRNPQLYTKDCIEKALT 69 (116)
Q Consensus 40 ~~IP~eVl~--yID~GrNPdiyTre~vE~~~~ 69 (116)
|-+-+|-|+ ||.+.-.+.-||..|-....+
T Consensus 54 II~tLE~LEKAYikD~It~~eYT~aC~rLL~Q 85 (155)
T 2caz_B 54 IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQ 85 (155)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 334455664 888999999999999877644
No 7
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=33.11 E-value=58 Score=23.80 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhh-cCCCCCchHHHHHHhcCCCcchHHHH
Q psy6386 20 RQTMISGLQEIDKLKSQ-VQDIHVPLEVFDYIDQGRNPQLYTKD 62 (116)
Q Consensus 20 in~lV~~L~~ld~~a~~-~~~~~IP~eVl~yID~GrNPdiyTre 62 (116)
.|.++.+|..|.++... -..+-||.-||+-+|.-++-.---|+
T Consensus 9 TN~Li~~l~~i~~l~~~~~~~IvIP~~Vi~ELD~LK~~~~~AR~ 52 (164)
T 2hwy_A 9 TQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARD 52 (164)
T ss_dssp HHHHHHCHHHHHHHHHHSSSEEEECHHHHHHHHHHC-CCHHHHH
T ss_pred hHHHHhCHHHHHHHHhCCCcEEEEcHHHHHHHHHhccCCHHHHH
Confidence 47788888888888643 23889999999999987776644444
No 8
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.89 E-value=37 Score=18.61 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=15.2
Q ss_pred HHHHHHHHHHH-HHHHhhhhc
Q psy6386 18 SFRQTMISGLQ-EIDKLKSQV 37 (116)
Q Consensus 18 ~~in~lV~~L~-~ld~~a~~~ 37 (116)
.++|++|+.|+ .+|++.+.+
T Consensus 9 r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 57888899988 788776544
No 9
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=30.86 E-value=23 Score=24.83 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=20.8
Q ss_pred CchHHHH--HHhcCCCcchHHHHHHHHHHH
Q psy6386 42 VPLEVFD--YIDQGRNPQLYTKDCIEKALT 69 (116)
Q Consensus 42 IP~eVl~--yID~GrNPdiyTre~vE~~~~ 69 (116)
+-+|-|+ ||.+.-.+.-||..|-....+
T Consensus 48 ~tle~LEKAyikD~It~~eYt~~C~rLL~Q 77 (118)
T 2p22_B 48 ITLDHVEKAYLKDSIDDTQYTNTVDKLLKQ 77 (118)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 3445554 888888999999999876543
No 10
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=30.49 E-value=20 Score=28.64 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.2
Q ss_pred CCCcchHHHHHHHHHHH
Q psy6386 53 GRNPQLYTKDCIEKALT 69 (116)
Q Consensus 53 GrNPdiyTre~vE~~~~ 69 (116)
.+||++||.+++..+.+
T Consensus 198 ~kNPeLWs~e~f~~l~~ 214 (308)
T 3vyw_A 198 YKNPELWTLDFLSLIKE 214 (308)
T ss_dssp TTSGGGGSHHHHHHHHT
T ss_pred ccCcccCCHHHHHHHHH
Confidence 89999999999998764
No 11
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=30.38 E-value=26 Score=22.73 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHHH
Q psy6386 45 EVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82 (116)
Q Consensus 45 eVl~yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~ 82 (116)
-|+.+|.+..|+.+++++.-+++.-....+.+-+..+.
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47799999999999999999988888777777666653
No 12
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=29.35 E-value=76 Score=21.12 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhhcCCCCCchHHHHHHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q psy6386 23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHML 89 (116)
Q Consensus 23 lV~~L~~ld~~a~~~~~~~IP~eVl~yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~ 89 (116)
+=..-.-|....+.+...-.|.+|+.|+- +.+|.+-.|..++.- ..+|.+.|-..|=+.|.
T Consensus 10 ~ee~r~lL~~~~p~l~~~I~p~~IL~~L~-----~~L~~~d~E~I~a~~-~~~G~~~aa~~LL~~L~ 70 (100)
T 2lwd_A 10 LEEYRLLLKRLQPEFKTRIIPTDIISDLS-----ECLINQECEEILQIC-STKGMMAGAEKLVECLL 70 (100)
T ss_dssp HHHHHHHHHHTHHHHHHHCCTTTTHHHHT-----TTSCHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHH-----HHCCHHHHHHHHHHH-HccChHHHHHHHHHHHH
Confidence 33333444555555544458999999994 366666666665542 34666666666655554
No 13
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=29.33 E-value=1.1e+02 Score=19.99 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCCchHHHHHHhcCC-Cc---chHHHHHHHHHHH
Q psy6386 40 IHVPLEVFDYIDQGR-NP---QLYTKDCIEKALT 69 (116)
Q Consensus 40 ~~IP~eVl~yID~Gr-NP---diyTre~vE~~~~ 69 (116)
+.|+...|..||+|+ +| ..|++.++.+.++
T Consensus 30 ~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~ 63 (112)
T 2wus_R 30 TNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSE 63 (112)
T ss_dssp SSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHH
Confidence 468899999999997 33 3678888765543
No 14
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=26.30 E-value=60 Score=27.50 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhChh
Q psy6386 61 KDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPN 98 (116)
Q Consensus 61 re~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe 98 (116)
.|.+.-+.++|+++...+...+.||+.|.++|..-+.+
T Consensus 79 ~~~~~~~~~~n~~~~~~~~~~~~~~~~l~~e~~~~~~~ 116 (751)
T 2xe4_A 79 PAVIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINE 116 (751)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccc
Confidence 35677778999999999999999999999999887654
No 15
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=26.10 E-value=52 Score=25.81 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhcCCCCCchHHHHHHhcCCC-cchHHHHHHHHHH
Q psy6386 25 SGLQEIDKLKSQVQDIHVPLEVFDYIDQGRN-PQLYTKDCIEKAL 68 (116)
Q Consensus 25 ~~L~~ld~~a~~~~~~~IP~eVl~yID~GrN-PdiyTre~vE~~~ 68 (116)
+++..+..++.-+ .+.||.++++-++...+ |+-.-..-++.|.
T Consensus 215 ~s~~~~~~~~~~~-Gv~iP~~l~~~l~~~~dd~~~~~~~Gi~~a~ 258 (304)
T 3fst_A 215 SNFKQAKKLADMT-NVRIPAWMAQMFDGLDDDAETRKLVGANIAM 258 (304)
T ss_dssp SCHHHHHHHHHHH-TCCCCHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4556666665555 89999999999988765 7644444444443
No 16
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=26.03 E-value=45 Score=21.74 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhChhh
Q psy6386 80 AYRKFKAHMLVELSGAFPNE 99 (116)
Q Consensus 80 a~~~fr~~L~~el~~~fPel 99 (116)
|+..|+..|...|...||+.
T Consensus 17 a~~aL~~EL~kRl~~~fpd~ 36 (81)
T 1ghh_A 17 AIDALAGELSRRIQYAFPDN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHhhCCCC
Confidence 45567899999999999985
No 17
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=25.96 E-value=14 Score=28.02 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHhcCCC
Q psy6386 39 DIHVPLEVFDYIDQGRN 55 (116)
Q Consensus 39 ~~~IP~eVl~yID~GrN 55 (116)
..++|.|||+|+.+.||
T Consensus 100 k~~LP~dVI~Ymrd~~N 116 (192)
T 1xou_A 100 KAQLPDEVISYINDPRN 116 (192)
T ss_dssp -----------------
T ss_pred cccCCHHHHHHHHccCC
Confidence 46899999999977444
No 18
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.73 E-value=2.9e+02 Score=22.70 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHhcC------CCcc------hHHHHHHHHHHHHhHHHhhHHHHHH
Q psy6386 15 FISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQG------RNPQ------LYTKDCIEKALTKNEQVKGKIDAYR 82 (116)
Q Consensus 15 ~l~~~in~lV~~L~~ld~~a~~~~~~~IP~eVl~yID~G------rNPd------iyTre~vE~~~~~Nq~~kGK~~a~~ 82 (116)
.|...++.|=..|.+++++.+.+ .+++..|.+. +.|+ -++++.++...+--..+...-..++
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v------~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~ 108 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSI------EYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQ 108 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45555666655556666655544 2455555444 4444 3677777776666555666666666
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHhh
Q psy6386 83 KFKAHMLVELSGAFPNELAKYRAIR 107 (116)
Q Consensus 83 ~fr~~L~~el~~~fPel~~~~~~ir 107 (116)
.++..|. .+....-.+...+.++.
T Consensus 109 ~l~~~~~-~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 109 QLTDMHI-MNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 6666553 34444445555555554
No 19
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=23.50 E-value=2e+02 Score=20.36 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=33.3
Q ss_pred hcCCCcchHHHHHHHHHHHHhHHH-------------hhH-----HHHHHHHHHHHHHHHHhhChhhH
Q psy6386 51 DQGRNPQLYTKDCIEKALTKNEQV-------------KGK-----IDAYRKFKAHMLVELSGAFPNEL 100 (116)
Q Consensus 51 D~GrNPdiyTre~vE~~~~~Nq~~-------------kGK-----~~a~~~fr~~L~~el~~~fPel~ 100 (116)
+.|=|-+.|.|..+|.|.+.+..+ .|+ -.....+|+...++|..=||+..
T Consensus 56 ~s~Fnq~~Fnk~lLe~v~ks~~~~~~il~~~~ls~~v~~~~~~ey~~m~~~I~~~v~e~~~~fFp~~~ 123 (127)
T 3on0_A 56 EGGFNQMEYNKLMLENVSRVRAMCTEILKMSVLNQESIASGNFDYAVIKPAIDKFAREQVSIFFPDDE 123 (127)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTCCCHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhccCccccHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 568899999999999999877633 222 12234557777778888888753
No 20
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.83 E-value=1.9e+02 Score=19.89 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Q psy6386 53 GRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELS 93 (116)
Q Consensus 53 GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~ 93 (116)
++|||--.|..+......=.....|+ ..|++.|++..+
T Consensus 66 E~DPDevNK~tl~~R~~~Vsalq~Ki---aeLKrqLAd~va 103 (107)
T 2k48_A 66 EVDPDDVNKSTLQNRRAAVSTLETKL---GELKRQLADLVA 103 (107)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 78999999999987776655566665 467777877665
No 21
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=22.63 E-value=99 Score=22.94 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.9
Q ss_pred CCCC-chHHHHHHhcCCCc-----chHHHHHHHHHHHHh
Q psy6386 39 DIHV-PLEVFDYIDQGRNP-----QLYTKDCIEKALTKN 71 (116)
Q Consensus 39 ~~~I-P~eVl~yID~GrNP-----diyTre~vE~~~~~N 71 (116)
+..+ |..|++++-.|+++ -+||++-=+.....|
T Consensus 91 tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d 129 (168)
T 3cz6_A 91 DLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSND 129 (168)
T ss_dssp CGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCC
T ss_pred CcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHHcCC
Confidence 6677 99999999999993 699998766666555
No 22
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=21.28 E-value=1.6e+02 Score=18.89 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHH
Q psy6386 62 DCIEKALTKNEQVKGKIDAYRKFKAHM 88 (116)
Q Consensus 62 e~vE~~~~~Nq~~kGK~~a~~~fr~~L 88 (116)
+.=++....||.++++.+-+..|+..=
T Consensus 19 ~LreAlkqsNq~mkeR~eeL~~wqekQ 45 (70)
T 3brv_B 19 ELRDAIRQSNQILRERCEELLHFQASQ 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567889999999999998887653
No 23
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=21.02 E-value=1.4e+02 Score=19.86 Aligned_cols=41 Identities=7% Similarity=0.085 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhCh
Q psy6386 56 PQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFP 97 (116)
Q Consensus 56 PdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fP 97 (116)
|+.. ...+....+.-....=+-+-|+.|...|..-|++.+|
T Consensus 85 ~~~l-~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~~lg 125 (150)
T 1x46_A 85 RPAL-KNVLKQQGINHKGRGVTAAHFEEFETALEAFLESHAS 125 (150)
T ss_dssp HHHH-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHST
T ss_pred HHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 5543 3455555544444444566788888888888888766
No 24
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=20.89 E-value=47 Score=21.01 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=11.8
Q ss_pred CCCCCchHHHHHHh
Q psy6386 38 QDIHVPLEVFDYID 51 (116)
Q Consensus 38 ~~~~IP~eVl~yID 51 (116)
++|.||.++|+.+-
T Consensus 19 SnIrIP~DIIEdl~ 32 (67)
T 2bnk_A 19 SNIRIPSDIIEDLV 32 (67)
T ss_dssp TTCCCCHHHHHHHH
T ss_pred cCCcCcHHHHHHHH
Confidence 48999999998775
No 25
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=20.49 E-value=38 Score=25.60 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=15.3
Q ss_pred CCCcchHHHHHHHHHHHH
Q psy6386 53 GRNPQLYTKDCIEKALTK 70 (116)
Q Consensus 53 GrNPdiyTre~vE~~~~~ 70 (116)
.+||++|+.++++.+.+.
T Consensus 185 ~~~p~lw~~~~l~~l~~~ 202 (257)
T 2qy6_A 185 AKNPDMWTQNLFNAMARL 202 (257)
T ss_dssp TTCGGGCCHHHHHHHHHH
T ss_pred ccChhhcCHHHHHHHHHH
Confidence 579999999999987663
Done!