Query psy6386
Match_columns 116
No_of_seqs 101 out of 141
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 16:34:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6386.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6386hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1whua_ a.4.9.1 (A:) Polynucle 67.8 5.2 0.00038 25.3 5.2 55 39-99 11-66 (104)
2 d1r69a_ a.35.1.2 (A:) 434 C1 r 43.4 12 0.00086 20.5 3.3 39 17-58 3-42 (63)
3 d2ofya1 a.35.1.3 (A:3-84) Puta 42.3 20 0.0014 21.3 4.4 49 15-67 14-64 (82)
4 d3d19a1 a.29.13.1 (A:11-144) U 39.0 46 0.0033 21.6 8.4 60 12-92 37-97 (134)
5 d1m0ua1 a.45.1.1 (A:123-249) C 37.6 7.9 0.00058 23.6 2.0 47 62-108 55-111 (127)
6 d1xoua_ a.231.1.1 (A:) Secrete 37.3 3.3 0.00024 29.0 0.0 35 15-52 49-83 (160)
7 d1kxpd3 a.126.1.1 (D:405-473) 32.7 12 0.00088 22.6 2.1 21 80-100 10-30 (69)
8 d2f6mb1 a.2.17.2 (B:15-118) Va 28.7 21 0.0015 22.9 2.9 50 43-102 35-86 (104)
9 d1aisb1 a.74.1.2 (B:1108-1205) 27.0 56 0.0041 19.1 4.7 49 23-74 2-62 (98)
10 d2croa_ a.35.1.2 (A:) cro 434 26.1 34 0.0025 18.6 3.3 40 16-58 4-44 (65)
11 d1b5ta_ c.1.23.1 (A:) Methylen 26.1 35 0.0025 24.2 4.1 31 26-57 196-226 (275)
12 d1cy5a_ a.77.1.3 (A:) Apoptoti 25.7 59 0.0043 18.8 6.7 79 15-103 8-87 (93)
13 d2f1ka1 a.100.1.12 (A:166-279) 24.7 47 0.0034 20.5 4.1 73 17-89 5-91 (114)
14 d2nn6d2 d.101.1.1 (D:147-235) 23.4 32 0.0023 19.7 2.9 34 59-94 55-88 (89)
15 d2g5ca1 a.100.1.12 (A:201-310) 23.2 62 0.0045 19.9 4.5 75 16-90 4-90 (110)
16 d2c5ra1 a.251.1.1 (A:66-129) E 23.0 19 0.0014 21.1 1.7 15 38-52 16-30 (64)
17 d2ff4a2 a.118.8.3 (A:105-283) 22.6 52 0.0038 21.2 4.2 38 73-110 116-154 (179)
18 d2gtsa1 a.25.5.1 (A:4-80) Hypo 20.7 50 0.0036 19.7 3.4 21 72-92 6-26 (77)
19 d3d19a2 a.29.13.1 (A:145-274) 20.6 1E+02 0.0073 19.6 6.2 66 12-94 31-97 (130)
20 d1ghha_ d.57.1.1 (A:) DNA dama 20.4 32 0.0023 21.0 2.5 19 80-98 17-35 (81)
No 1
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.83 E-value=5.2 Score=25.25 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHhcCCCcchHHHHHHHHHHHH-hHHHhhHHHHHHHHHHHHHHHHHhhChhh
Q psy6386 39 DIHVPLEVFDYIDQGRNPQLYTKDCIEKALTK-NEQVKGKIDAYRKFKAHMLVELSGAFPNE 99 (116)
Q Consensus 39 ~~~IP~eVl~yID~GrNPdiyTre~vE~~~~~-Nq~~kGK~~a~~~fr~~L~~el~~~fPel 99 (116)
.+..|.||.++|.+ +..+-|+.+.+. ..--.-+-+++..+++.+.++|.+.||+.
T Consensus 11 ~f~~~eel~~~V~~------~~~~ki~~a~~~~~~dK~eR~~al~~ik~ei~~~l~e~~~~~ 66 (104)
T d1whua_ 11 IFTPSAEIVKYTKI------IAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEV 66 (104)
T ss_dssp CCCCCHHHHHHHHH------HHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHTTTCSSS
T ss_pred CCCCCHHHHHHHHH------HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45678888888874 445666666531 22223456788999999999999999973
No 2
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=43.36 E-value=12 Score=20.53 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHH-HHHHhhhhcCCCCCchHHHHHHhcCCCcch
Q psy6386 17 SSFRQTMISGLQ-EIDKLKSQVQDIHVPLEVFDYIDQGRNPQL 58 (116)
Q Consensus 17 ~~~in~lV~~L~-~ld~~a~~~~~~~IP~eVl~yID~GrNPdi 58 (116)
+++|..+-.... ...+++..+ .|+...+..++.|++|..
T Consensus 3 g~rik~~R~~~g~sq~elA~~~---gvs~~~is~~E~g~~~~~ 42 (63)
T d1r69a_ 3 SSRVKSKRIQLGLNQAELAQKV---GTTQQSIEQLENGKTKRP 42 (63)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH---TSCHHHHHHHHTTSCSSC
T ss_pred HHHHHHHHHHcCCcHHHHHHHh---CcCHHHHHHHHCCCCcCH
Confidence 344444444333 334445444 588889999999999965
No 3
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=42.31 E-value=20 Score=21.30 Aligned_cols=49 Identities=12% Similarity=0.337 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHhcCC--CcchHHHHHHHHH
Q psy6386 15 FISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGR--NPQLYTKDCIEKA 67 (116)
Q Consensus 15 ~l~~~in~lV~~L~~ld~~a~~~~~~~IP~eVl~yID~Gr--NPdiyTre~vE~~ 67 (116)
.++.+|..+=+++ .+.+++..+ -|...-+..||+|+ +|.+.|-.-|-.+
T Consensus 14 ~lG~~ir~~R~~~-t~~eLA~~~---Gvs~~~ls~iE~G~~~~ps~~tl~kia~~ 64 (82)
T d2ofya1 14 RLGELLRSARGDM-SMVTVAFDA---GISVETLRKIETGRIATPAFFTIAAVARV 64 (82)
T ss_dssp HHHHHHHHHHTTS-CHHHHHHHH---TCCHHHHHHHHTTCCSSCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHH---cCCHHHHHHHHcCCcCCCCHHHHHHHHHH
Confidence 3444444433332 445566555 47889999999996 7999887666544
No 4
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=38.98 E-value=46 Score=21.60 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=45.1
Q ss_pred chh-hHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q psy6386 12 YSK-FISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLV 90 (116)
Q Consensus 12 ~s~-~l~~~in~lV~~L~~ld~~a~~~~~~~IP~eVl~yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~ 90 (116)
|+. .+.++.+...+.+.+|-..+..+.+...|. ...+=|+.+..=+..|+.|+..+.+
T Consensus 37 p~E~~li~~A~~F~~~Fd~Ll~~a~~~~~~~~~~---------------------~l~~ln~~~~~~~~~~~~FK~~ll~ 95 (134)
T d3d19a1 37 CEDTQLIEEANQFYRLFEHIEQIAHSYTNETDPE---------------------QIKRFNAEVQQAATNIWGFKRKILG 95 (134)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTCCTTSCHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 999999999999998877776664444443 3345678888888889999998888
Q ss_pred HH
Q psy6386 91 EL 92 (116)
Q Consensus 91 el 92 (116)
.+
T Consensus 96 ~i 97 (134)
T d3d19a1 96 LI 97 (134)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=37.62 E-value=7.9 Score=23.57 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=32.3
Q ss_pred HHHHHHHHHhH-HHhhH---------HHHHHHHHHHHHHHHHhhChhhHHHHHHhhC
Q psy6386 62 DCIEKALTKNE-QVKGK---------IDAYRKFKAHMLVELSGAFPNELAKYRAIRG 108 (116)
Q Consensus 62 e~vE~~~~~Nq-~~kGK---------~~a~~~fr~~L~~el~~~fPel~~~~~~ir~ 108 (116)
..+|+.+++|. +.-|. ..++..++..+...+.+.||.|.+-|..+.+
T Consensus 55 ~~le~~L~~~~~fl~G~~~T~aD~~l~~~l~~~~~~~~~~~~~~~P~L~~~~~rv~~ 111 (127)
T d1m0ua1 55 EKLEQTVKDNDGHLALGKLTWADVYFAGITDYMNYMVKRDLLEPYPALRGVVDAVNA 111 (127)
T ss_dssp HHHHHHHHHTTSSSBTTBCCHHHHHHHHHHHHHHHHHTSCTTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcccCCcccHHHHHHHHHHHHHHHHcCcchhhcChHHHHHHHHHHc
Confidence 56778777664 66665 2344445555556667889999999998864
No 6
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli [TaxId: 562]}
Probab=37.33 E-value=3.3 Score=28.98 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHhc
Q psy6386 15 FISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQ 52 (116)
Q Consensus 15 ~l~~~in~lV~~L~~ld~~a~~~~~~~IP~eVl~yID~ 52 (116)
-+++++++.|-.+++=++ +-.-.++|.||++|+.+
T Consensus 49 ~mAN~VDevIA~~~k~~D---k~~k~~LP~dVi~Ymrd 83 (160)
T d1xoua_ 49 KMANLVDAKIADVQSSSD---KNAKAQLPDEVISYIND 83 (160)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHhhcCC---ccccCCCCHHHHHHHHh
Confidence 556666666655553221 11144789999999976
No 7
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.68 E-value=12 Score=22.58 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhChhhH
Q psy6386 80 AYRKFKAHMLVELSGAFPNEL 100 (116)
Q Consensus 80 a~~~fr~~L~~el~~~fPel~ 100 (116)
.|-.|++.|++.|...+|+..
T Consensus 10 tFte~kkkL~e~lr~k~P~as 30 (69)
T d1kxpd3 10 TFTEYKKKLAERLKAKLPDAT 30 (69)
T ss_dssp CHHHHHHHHHHHHHHHCTTSC
T ss_pred cHHHHHHHHHHHHHhhCCCCC
Confidence 467799999999999999854
No 8
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.75 E-value=21 Score=22.87 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=29.2
Q ss_pred chHHHH--HHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHhhChhhHHH
Q psy6386 43 PLEVFD--YIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAK 102 (116)
Q Consensus 43 P~eVl~--yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPel~~~ 102 (116)
-+|-|+ ||.+.-.+.-||..|.....+=.-.. ++...+.+...||++.+-
T Consensus 35 tLe~LEkAyikD~It~~eYt~~c~rLl~QyK~~~----------~~~~~~~v~~~f~~le~F 86 (104)
T d2f6mb1 35 TLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYL----------NSQNKEEINKHFQSIEAF 86 (104)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH----------TCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH----------HHhhhHHhhhccCCHHHH
Confidence 344443 78888889889999966544322211 112234566677765443
No 9
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=27.01 E-value=56 Score=19.09 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCchHHHH-------H-----HhcCCCcchHHHHHHHHHHHHhHHH
Q psy6386 23 MISGLQEIDKLKSQVQDIHVPLEVFD-------Y-----IDQGRNPQLYTKDCIEKALTKNEQV 74 (116)
Q Consensus 23 lV~~L~~ld~~a~~~~~~~IP~eVl~-------y-----ID~GrNPdiyTre~vE~~~~~Nq~~ 74 (116)
|...+++|++..+.+ .+|.+|.+ . +-.||+|....--+|-.+-+.|..-
T Consensus 2 L~~a~~~I~~~~~~L---~L~~~i~~~A~~i~k~~~~~~~~~g~~~~~iaaA~iY~Acr~~~~~ 62 (98)
T d1aisb1 2 LAFALSELDRITAQL---KLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVP 62 (98)
T ss_dssp HHHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHc---CcCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 456777888887766 45776665 1 1249999999888888777766543
No 10
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=26.11 E-value=34 Score=18.63 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHH-HHHHhhhhcCCCCCchHHHHHHhcCCCcch
Q psy6386 16 ISSFRQTMISGLQ-EIDKLKSQVQDIHVPLEVFDYIDQGRNPQL 58 (116)
Q Consensus 16 l~~~in~lV~~L~-~ld~~a~~~~~~~IP~eVl~yID~GrNPdi 58 (116)
++++|..+-+... ...+++..+ .|+..-+..++.|++|-.
T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~---gvs~~ti~~~E~g~~~~~ 44 (65)
T d2croa_ 4 LSERLKKRRIALKMTQTELATKA---GVKQQSIQLIEAGVTKRP 44 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH---TSCHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH---CcCHhHHHHHHCCCCCCH
Confidence 4455555544443 344445444 678889999999999864
No 11
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}
Probab=26.07 E-value=35 Score=24.17 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHhhhhcCCCCCchHHHHHHhcCCCcc
Q psy6386 26 GLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQ 57 (116)
Q Consensus 26 ~L~~ld~~a~~~~~~~IP~eVl~yID~GrNPd 57 (116)
.++.+..++.-+ .+.||.++++.++...++.
T Consensus 196 s~~~l~~~~~~~-Gv~iP~~~~~~~~~~~~~~ 226 (275)
T d1b5ta_ 196 NFKQAKKFADMT-NVRIPAWMAQMFDGLDDDA 226 (275)
T ss_dssp CHHHHHHHHHTT-TCCCCHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHc-CCcccHHHHHHHhhcCCCH
Confidence 456677776655 9999999999999877653
No 12
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.65 E-value=59 Score=18.79 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhc-CCCCCchHHHHHHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHH
Q psy6386 15 FISSFRQTMISGLQEIDKLKSQV-QDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELS 93 (116)
Q Consensus 15 ~l~~~in~lV~~L~~ld~~a~~~-~~~~IP~eVl~yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~ 93 (116)
.|......+|+.++ .+.+-+.+ ..--+..+-.+.|....++.--.+.++.... .+|. .||..|.+.|.+
T Consensus 8 ~L~~~r~~Lv~~l~-~~~vl~~L~~~~vlt~~e~e~I~~~~t~~~k~~~LL~~L~-----~kg~-~af~~F~~aL~~--- 77 (93)
T d1cy5a_ 8 CLLQHREALEKDIK-TSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMIL-----KKDN-DSYVSFYNALLH--- 77 (93)
T ss_dssp HHHHTHHHHHHHCC-HHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHH-----TSCH-HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHcCCCCHHHHHHHHccCChHHHHHHHHHHHH-----hcCh-hHHHHHHHHHHh---
Confidence 55666667777773 44444322 1223556667888877787777777776665 3565 689999999886
Q ss_pred hhChhhHHHH
Q psy6386 94 GAFPNELAKY 103 (116)
Q Consensus 94 ~~fPel~~~~ 103 (116)
...|.+++..
T Consensus 78 ~~~~~La~lL 87 (93)
T d1cy5a_ 78 EGYKDLAALL 87 (93)
T ss_dssp TTCHHHHHHH
T ss_pred cChHHHHHHh
Confidence 4566665544
No 13
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=24.66 E-value=47 Score=20.54 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHh--hhhcC---CCCCchHHHHHHh---------cCCCcchHHHHHHHHHHHHhHHHhhHHHHHH
Q psy6386 17 SSFRQTMISGLQEIDKL--KSQVQ---DIHVPLEVFDYID---------QGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82 (116)
Q Consensus 17 ~~~in~lV~~L~~ld~~--a~~~~---~~~IP~eVl~yID---------~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~ 82 (116)
.+++=++|++|+.+=.. ...+. +-.....+..+.- .+-||++|+-=|.+....=-+....-.+.++
T Consensus 5 HD~~~A~iSHLPHlia~~l~~~~~~~~~~~~~~~~~~~ag~gfrD~tRiA~s~p~mW~dI~~~N~~~i~~~l~~~~~~L~ 84 (114)
T d2f1ka1 5 HDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVGGGNPELGTMMATYNQRALLKSLQDYRQHLD 84 (114)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGGGSCHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888876332 12211 1111122222221 2789999997777655444455666666666
Q ss_pred HHHHHHH
Q psy6386 83 KFKAHML 89 (116)
Q Consensus 83 ~fr~~L~ 89 (116)
.|++.|.
T Consensus 85 ~l~~~l~ 91 (114)
T d2f1ka1 85 QLITLIS 91 (114)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 14
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.43 E-value=32 Score=19.72 Aligned_cols=34 Identities=12% Similarity=0.358 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHh
Q psy6386 59 YTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSG 94 (116)
Q Consensus 59 yTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~el~~ 94 (116)
+|.+.++.|...-+..-.++ ++-+|+.|.+++++
T Consensus 55 ~s~~~~~~~l~~a~~~~~~I--~~~~r~~l~k~~~k 88 (89)
T d2nn6d2 55 YSDTELQQCLAAAQAASQHV--FRFYRESLQRRYSK 88 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcC
Confidence 77888888887766555555 44588888887654
No 15
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=23.16 E-value=62 Score=19.87 Aligned_cols=75 Identities=13% Similarity=0.282 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhh--hhcCCCCCch-HHHHHH-----h----cCCCcchHHHHHHHHHHHHhHHHhhHHHHHHH
Q psy6386 16 ISSFRQTMISGLQEIDKLK--SQVQDIHVPL-EVFDYI-----D----QGRNPQLYTKDCIEKALTKNEQVKGKIDAYRK 83 (116)
Q Consensus 16 l~~~in~lV~~L~~ld~~a--~~~~~~~IP~-eVl~yI-----D----~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~ 83 (116)
-.+++=++|++|+.+=..+ ..+.....|. +++.+- | .|-||++|+-=|......=......-.+.+..
T Consensus 4 eHD~~~A~vSHlPHlia~al~~~~~~~~~~~~~~~~~agggfrD~TRiA~s~p~mW~dI~~~N~~~i~~~l~~~~~~L~~ 83 (110)
T d2g5ca1 4 LHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDPIMWRDIFLENKENVMKAIEGFEKSLNH 83 (110)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTTTGGGC---CCSCHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcchHHHHHHcchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888764321 1110101111 112211 2 27899999987776655555666666777777
Q ss_pred HHHHHHH
Q psy6386 84 FKAHMLV 90 (116)
Q Consensus 84 fr~~L~~ 90 (116)
|++.|..
T Consensus 84 ~~~~l~~ 90 (110)
T d2g5ca1 84 LKELIVR 90 (110)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7777753
No 16
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=22.98 E-value=19 Score=21.14 Aligned_cols=15 Identities=13% Similarity=0.510 Sum_probs=12.5
Q ss_pred CCCCCchHHHHHHhc
Q psy6386 38 QDIHVPLEVFDYIDQ 52 (116)
Q Consensus 38 ~~~~IP~eVl~yID~ 52 (116)
++|.||.++|+.+-.
T Consensus 16 SnIrIP~DIIEdl~~ 30 (64)
T d2c5ra1 16 SNIRIPSDIIEDLVN 30 (64)
T ss_dssp TTCCCCHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHH
Confidence 489999999987755
No 17
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.58 E-value=52 Score=21.20 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhh-ChhhHHHHHHhhCCC
Q psy6386 73 QVKGKIDAYRKFKAHMLVELSGA-FPNELAKYRAIRGGD 110 (116)
Q Consensus 73 ~~kGK~~a~~~fr~~L~~el~~~-fPel~~~~~~ir~~~ 110 (116)
....=+.+|+.+++.|.++|.-+ =|++..-|..|..++
T Consensus 116 r~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~~~ 154 (179)
T d2ff4a2 116 RQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQ 154 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhCC
Confidence 34445678999999999999666 467889999987665
No 18
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=20.72 E-value=50 Score=19.68 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=13.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q psy6386 72 EQVKGKIDAYRKFKAHMLVEL 92 (116)
Q Consensus 72 q~~kGK~~a~~~fr~~L~~el 92 (116)
+.++|.++-++.|+..|.+++
T Consensus 6 eevr~fv~hlerfkellndev 26 (77)
T d2gtsa1 6 EEVREFVGHLERFKELLREEV 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777666554
No 19
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=20.60 E-value=1e+02 Score=19.58 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=44.1
Q ss_pred chh-hHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q psy6386 12 YSK-FISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLV 90 (116)
Q Consensus 12 ~s~-~l~~~in~lV~~L~~ld~~a~~~~~~~IP~eVl~yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~L~~ 90 (116)
|+. .+.++.+...+.+.++-.-+..+.+..+ +|+. ...+.+=|+.+..-+..|+.|+..+.+
T Consensus 31 p~E~~li~~A~~f~~~Fe~Ll~~a~~l~~~~~------------~~~~-----~~~l~~ln~~~~~~~~~~~~FK~~~~~ 93 (130)
T d3d19a2 31 PSERKLVDTARNFSNDFDELMYQAIDLESMKP------------QSQT-----APLLDQFLDQNRVSVASLRDFKKTARD 93 (130)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------------TTCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------------Cccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 8899999999998887655443322111 2222 234556777777888899999998888
Q ss_pred HHHh
Q psy6386 91 ELSG 94 (116)
Q Consensus 91 el~~ 94 (116)
.+-+
T Consensus 94 ~~l~ 97 (130)
T d3d19a2 94 LIEQ 97 (130)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7643
No 20
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=20.36 E-value=32 Score=20.96 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhChh
Q psy6386 80 AYRKFKAHMLVELSGAFPN 98 (116)
Q Consensus 80 a~~~fr~~L~~el~~~fPe 98 (116)
|+..++..|...|...||+
T Consensus 17 a~~aL~~EL~kRl~~~fpD 35 (81)
T d1ghha_ 17 AIDALAGELSRRIQYAFPD 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 5667889999999999997
Done!