RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6386
         (116 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 10/38 (26%)

Query: 28 QEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIE 65
          Q + KL++ ++ ++         D    P L  K  +E
Sbjct: 20 QALKKLQASLK-LYAD-------DSA--PALAIKATME 47


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.24
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 18/88 (20%)

Query: 4  HILNHLGE----YSKFISSFRQTMISGL--QEI-DKLKSQVQDIHVPLEVFDYIDQGRNP 56
          H+    GE    Y   +S F    +     +++ D  KS +       E  D+I   ++ 
Sbjct: 6  HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-----EEIDHIIMSKDA 60

Query: 57 QLYTKDCIEKALTKNEQVKGKIDAYRKF 84
             T       L+K E++       +KF
Sbjct: 61 VSGTLRLFWTLLSKQEEM------VQKF 82


>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
           hydro; HET: ADP; 2.91A {Escherichia coli}
          Length = 500

 Score = 28.9 bits (65), Expect = 0.37
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 28  QEIDKLKSQVQDIHVPLEVFDYI 50
           +E ++ + ++ +I +P  VF+ I
Sbjct: 212 EEYERWQKEIGEITLPDHVFELI 234


>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
           joint center for struc genomics, JCSG; HET: MSE PG4;
           2.00A {Cytophaga hutchinsonii atcc 33406}
          Length = 331

 Score = 27.9 bits (63), Expect = 0.78
 Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 28  QEIDKLKSQVQDIHVPLEVFDYI----DQGRNPQLYTKDCIEKALT 69
            ++ ++++++  + +   +  YI       R P  Y  +     + 
Sbjct: 213 NDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYIL 258


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 0.97
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 1/7 (14%)

Query: 8    H-LGEYS 13
            H LGEY+
Sbjct: 1762 HSLGEYA 1768


>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein;
          structural genomics, PSI-2, protein structure
          initiative; HET: MSE PEG; 1.90A {Bacteroides
          thetaiotaomicron}
          Length = 298

 Score = 26.2 bits (57), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 24 ISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRN 55
          I G QE      Q++D+   L  +DYI  GR+
Sbjct: 46 IFGTQEC--FLHQLKDMKEALPGYDYIGVGRD 75


>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus}
           SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*
          Length = 208

 Score = 25.4 bits (56), Expect = 4.5
 Identities = 13/56 (23%), Positives = 19/56 (33%)

Query: 29  EIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKF 84
            ID     V+D+HV      Y+        Y K  +   L K E++       R  
Sbjct: 86  YIDMFCEGVRDLHVKYTRMIYMAYETEKDPYIKSILPGELAKFEKLLATRGNGRNL 141


>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
          protein structure initiative; 2.00A {Clostridium
          perfringens}
          Length = 241

 Score = 24.8 bits (55), Expect = 7.5
 Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 64 IEKALTKNEQVKGKIDAYRKFKAHM 88
          +EK   K + ++ ++D  R+F   M
Sbjct: 72 LEKEPKKLKNLQCELDWERRF-DGM 95


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,756,157
Number of extensions: 92205
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 18
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)