RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6386
         (116 letters)



>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 442

 Score = 24.5 bits (52), Expect = 3.6
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 12 YSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEV-----FDYIDQGRNPQLYTKDCIEK 66
          YS  +   ++       E+D L   V+  H  L        D++     P  Y K+   +
Sbjct: 6  YSNALPFMQE------NELDYLSEFVKAAHHMLHERKGPGSDFLGWVDWPIRYDKNEFSR 59

Query: 67 ALTKNEQVKGKID 79
               E+++   D
Sbjct: 60 IKQAAERIRNHSD 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 430,207
Number of extensions: 17741
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)