BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6387
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 183/439 (41%), Gaps = 55/439 (12%)
Query: 68 NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEH 127
N+T Y+G+ V ++ FFW F ++ A + PV++WL GGPG SS+ GLF E
Sbjct: 13 NVTQYTGYLDV-----EDEDKHFFFWTFESRNDPAKD-PVILWLNGGPGCSSLTGLFFEL 66
Query: 128 GPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVN 187
GP + K PY W N VI++D PV GFS+ + + N G +
Sbjct: 67 GPSSIGPDLKPIGNPY------SWNSNATVIFLDQPVNVGFSYSGSSGV--SNTVAAGKD 118
Query: 188 LYIGLVQFFKIFKEY--QSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDK-INLKG 244
+Y L FF F EY + DF++ GESYAG Y+P A I S KD+ NL
Sbjct: 119 VYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEIL-------SHKDRNFNLTS 171
Query: 245 IAIGNGLCDPLNMMVYSSYLYQLGLVDDNGKKAI-EEKEKQAMELILQWKWNEAYEAFDQ 303
+ IGNGL DPL Y Y+ + G+ ++ +E AME L+ +D
Sbjct: 172 VLIGNGLTDPLTQYNY----YEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDS 227
Query: 304 IINGDFNKSTIFHTLTNFTNY----------------FNYLVPVADNTSDVLMEELFKNT 347
+TI+ Y N P + D L ++ K
Sbjct: 228 QSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEA 287
Query: 348 AFRQAVHLGNATFHSDDTVEKFL-KSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIV 406
+ H + F D FL D M + LLN P +L Y G D I
Sbjct: 288 VGAEVDHYESCNF---DINRNFLFAGDWMKPYHTAVTDLLNQDLP---ILVYAGDKDFIC 341
Query: 407 AYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQ--NDIAGYVKNVNKNFYEVLVRNAGHMVP 464
+ + L W E + + W +++AG VK+ K+F + V N GHMVP
Sbjct: 342 NWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSY-KHFTYLRVFNGGHMVP 400
Query: 465 KDQSEWAFDLITRFTHGSL 483
D E A ++ + HG
Sbjct: 401 FDVPENALSMVNEWIHGGF 419
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 181/439 (41%), Gaps = 55/439 (12%)
Query: 68 NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEH 127
N+T Y+G+ V ++ FFW F ++ A + PV++WL GGPG SS+ GLF
Sbjct: 13 NVTQYTGYLDV-----EDEDKHFFFWTFESRNDPAKD-PVILWLNGGPGCSSLTGLFFAL 66
Query: 128 GPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVN 187
GP + K PY W N VI++D PV GFS+ + + N G +
Sbjct: 67 GPSSIGPDLKPIGNPY------SWNSNATVIFLDQPVNVGFSYSGSSGV--SNTVAAGKD 118
Query: 188 LYIGLVQFFKIFKEY--QSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDK-INLKG 244
+Y L FF F EY + DF++ G SYAG Y+P A I S KD+ NL
Sbjct: 119 VYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEIL-------SHKDRNFNLTS 171
Query: 245 IAIGNGLCDPLNMMVYSSYLYQLGLVDDNGKKAI-EEKEKQAMELILQWKWNEAYEAFDQ 303
+ IGNGL DPL Y Y+ + G+ ++ +E AME L+ +D
Sbjct: 172 VLIGNGLTDPLTQYNY----YEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDS 227
Query: 304 IINGDFNKSTIFHTLTNFTNY----------------FNYLVPVADNTSDVLMEELFKNT 347
+TI+ Y N P + D L ++ K
Sbjct: 228 QSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEA 287
Query: 348 AFRQAVHLGNATFHSDDTVEKFL-KSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIV 406
+ H + F D FL D M + LLN P +L Y G D I
Sbjct: 288 VGAEVDHYESCNF---DINRNFLFAGDWMKPYHTAVTDLLNQDLP---ILVYAGDKDFIC 341
Query: 407 AYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQ--NDIAGYVKNVNKNFYEVLVRNAGHMVP 464
+ + L W E + + W +++AG VK+ K+F + V N GHMVP
Sbjct: 342 NWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSY-KHFTYLRVFNGGHMVP 400
Query: 465 KDQSEWAFDLITRFTHGSL 483
D E A ++ + HG
Sbjct: 401 FDVPENALSMVNEWIHGGF 419
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 28/211 (13%)
Query: 64 LPGL----NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASS 119
LPGL + YSG+ + + S L +WF +Q K+ +PV++WL GGPG SS
Sbjct: 10 LPGLAKQPSFRQYSGYLKSSG------SKHLHYWFVESQ-KDPENSPVVLWLNGGPGCSS 62
Query: 120 MFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSR 179
+ GL EHGP ++ L+ W NV+Y+++P G GFS+ + + Y+
Sbjct: 63 LDGLLTEHGPFLVQPDGVT-----LEYNPYSWNLIANVLYLESPAGVGFSYSD-DKFYAT 116
Query: 180 NESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDK 239
N++ V + + L FF++F EY++N ++TGESYAG Y+P LA + + +P
Sbjct: 117 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV-MQDPS------- 168
Query: 240 INLKGIAIGNGLC---DPLNMMVYSSYLYQL 267
+NL+G+A+GNGL N +VY +Y + L
Sbjct: 169 MNLQGLAVGNGLSSYEQNDNSLVYFAYYHGL 199
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 393 YKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQN--DIAGYVKNVNKN 450
Y++L YNG +D+ + F+ +L+ K + P Y + IAG+VK +
Sbjct: 362 YQILLYNGDVDMACNFMGDEWFVDSLN--QKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI 419
Query: 451 FYEVLVRNAGHMVPKDQSEWAFDLITRF 478
+ + ++ AGHMVP D+ AF + +RF
Sbjct: 420 AF-LTIKGAGHMVPTDKPLAAFTMFSRF 446
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 28/211 (13%)
Query: 64 LPGL----NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASS 119
LPGL + YSG+ + + S L +WF +Q K+ +PV++WL GGPG SS
Sbjct: 12 LPGLAKQPSFRQYSGYLKGSG------SKHLHYWFVESQ-KDPENSPVVLWLNGGPGCSS 64
Query: 120 MFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSR 179
+ GL EHGP ++ L+ W NV+Y+++P G GFS+ + + Y+
Sbjct: 65 LDGLLTEHGPFLVQPDGVT-----LEYNPYSWNLIANVLYLESPAGVGFSYSD-DKFYAT 118
Query: 180 NESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDK 239
N++ V + + L FF++F EY++N ++TGESYAG Y+P LA + + +P
Sbjct: 119 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV-MQDP-------S 170
Query: 240 INLKGIAIGNGLCD---PLNMMVYSSYLYQL 267
+NL+G+A+GNGL N +VY +Y + L
Sbjct: 171 MNLQGLAVGNGLSSYEQNDNSLVYFAYYHGL 201
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 19/219 (8%)
Query: 65 PGLNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM-FGL 123
P ++ YSG+ TVD+ +LF+ A E +A AP+++WL GGPG SS+ +G
Sbjct: 18 PAVDFDMYSGYI----TVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPGCSSVAYGA 72
Query: 124 FQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVE-HNDLYSRNES 182
+E G + L + W K NV+++D+P G GFS+ +D+Y+ ++
Sbjct: 73 SEELGAFRVKPAGAGLVL-----NEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINL 242
+ Y L ++F+ F Y+ DFY+ GESYAG YVP L+ +H S+ INL
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR------SKNPVINL 181
Query: 243 KGIAIGNGLCDPLNMMVYS-SYLYQLGLVDDNGKKAIEE 280
KG +GNGL D + V + + + G+V D+ + ++E
Sbjct: 182 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 220
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 19/219 (8%)
Query: 65 PGLNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM-FGL 123
P ++ YSG+ TVD+ +LF+ A E +A AP+++WL GGPG SS+ +G
Sbjct: 13 PAVDFDMYSGYI----TVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPGCSSVAYGA 67
Query: 124 FQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVE-HNDLYSRNES 182
+E G + L + W K NV+++D+P G GFS+ +D+Y+ ++
Sbjct: 68 SEELGAFRVKPRGAGLVL-----NEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINL 242
+ Y L ++F+ F Y+ DFY+ GESYAG YVP L+ +H S+ INL
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR------SKNPVINL 176
Query: 243 KGIAIGNGLCDPLNMMVYS-SYLYQLGLVDDNGKKAIEE 280
KG +GNGL D + V + + + G+V D+ + ++E
Sbjct: 177 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 215
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 19/219 (8%)
Query: 65 PGLNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM-FGL 123
P ++ YSG+ TVD+ +LF+ A E +A AP+++WL GGPG SS+ +G
Sbjct: 18 PAVDFDMYSGYI----TVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPGCSSVAYGA 72
Query: 124 FQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVE-HNDLYSRNES 182
+E G + L + W K NV+++D+P G GFS+ +D+Y+ ++
Sbjct: 73 SEELGAFRVKPRGAGLVL-----NEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINL 242
+ Y L ++F+ F Y+ DFY+ GESYAG YVP L+ +H S+ INL
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR------SKNPVINL 181
Query: 243 KGIAIGNGLCDPLNMMVYS-SYLYQLGLVDDNGKKAIEE 280
KG +GNGL D + V + + + G+V D+ + ++E
Sbjct: 182 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 220
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 19/219 (8%)
Query: 65 PGLNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM-FGL 123
P ++ YSG+ TVD+ +LF+ A E +A AP+++WL GGPG SS+ +G
Sbjct: 14 PAVDFDMYSGYI----TVDEGAGRSLFYLLQEAPE-DAQPAPLVLWLNGGPGCSSVAYGA 68
Query: 124 FQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVE-HNDLYSRNES 182
+E G + L + W K NV+++D+P G GFS+ +D+Y+ ++
Sbjct: 69 SEELGAFRVKPRGAGLVL-----NEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINL 242
+ Y L ++F+ F Y+ DFY+ GESYAG YVP L+ +H S+ INL
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR------SKNPVINL 177
Query: 243 KGIAIGNGLCDPLNMMVYS-SYLYQLGLVDDNGKKAIEE 280
KG +GNGL D + V + + + G+V D+ + ++E
Sbjct: 178 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKE 216
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 195/446 (43%), Gaps = 43/446 (9%)
Query: 59 LSKVNLPGLNITSYSGFFRVNST-VDKNHSSAL--FFWFFPAQEKNAS-EAPVLVWLQGG 114
LS+V P ++G + S D+ SS L FFW F + N + + P+++WL GG
Sbjct: 17 LSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGG 76
Query: 115 PGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHN 174
PG SSM G E GP +N K L + W ++++ID P GTGFS ++
Sbjct: 77 PGCSSMDGALVESGPFRVNSDGK------LYLNEGSWISKGDLLFIDQPTGTGFSVEQNK 130
Query: 175 D-------LYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIH 227
D + + V + L +FKIF E + ++GESYAG+Y+P A I
Sbjct: 131 DEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAIL 190
Query: 228 LNNPEQGSEKDKINLKGIAIGNGLCDP-LNMMVYSSYLYQLGLVDDNGK--KAIEEKEKQ 284
+N + D +LK + IGNG DP + Y + + L+D++ K + +
Sbjct: 191 NHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHEN 250
Query: 285 AMELILQWKWNEA----YEAFDQIIN--GDFNKSTIFHTLTNFTNYFNYLVPVADNTSDV 338
LI +EA Y+ + I+N + + + + N +N+ + + + +
Sbjct: 251 CQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGM 310
Query: 339 -------LMEELFKNTAFRQAVHLGNATFHSDDTVEKFLKSDVMSSV-KIWIEILLNSTN 390
+ + F ++HL + + + + + + K I +L
Sbjct: 311 NWPKDISFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLE 370
Query: 391 PSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYK-TAPRTAWYYQN-------DIAG 442
+++ +NG D+I ++ + L W G + + A W +++ + +G
Sbjct: 371 SGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSG 430
Query: 443 YVKNVNKNFYEVLVRNAGHMVPKDQS 468
YVK ++N V V NA HMVP D+S
Sbjct: 431 YVK-YDRNLTFVSVYNASHMVPFDKS 455
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 13/228 (5%)
Query: 52 ELVKAKNLSKVNLPGLNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWL 111
+L + ++ + LPG G + T+D N+ AL++WF A + + AP+++WL
Sbjct: 1 QLQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWL 60
Query: 112 QGGPGASSM-FGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSF 170
GGPG SS+ G QE G ++ ++ L + W K N+++ ++P G GFS+
Sbjct: 61 NGGPGCSSIGLGAMQELGAFRVHTNGESLLL-----NEYAWNKAANILFAESPAGVGFSY 115
Query: 171 VEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNN 230
+ S + + + Y LV++F+ F Y +FY+ GES G ++P L+ ++ N
Sbjct: 116 SNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNR 173
Query: 231 PEQGSEKDKINLKGIAIGNGLC-DPLNMMVYSSYLYQLGLVDDNGKKA 277
+ IN +G+ + +GL D +M+ + GL+ D + +
Sbjct: 174 ----NNSPFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDS 217
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 393 YKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQN--DIAGYVKNVNKN 450
Y++L YNG +D+ + F+ +L+ K + P Y + IAG+VK +
Sbjct: 64 YQILLYNGDVDMACNFMGDEWFVDSLN--QKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI 121
Query: 451 FYEVLVRNAGHMVPKDQSEWAFDLITRF 478
+ + ++ AGHMVP D+ AF + +RF
Sbjct: 122 AF-LTIKGAGHMVPTDKPLAAFTMFSRF 148
>pdb|2RJ2|A Chain A, Crystal Structure Of The Sugar Recognizing Scf Ubiquitin
Ligase At 1.7 Resolution
Length = 185
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 356 GNATFHSDDTVEKFLKSDVMSSVKIWI---------EILLNSTNPSYKVL-FYNGQLDII 405
GN F DD+V+K+ S K + E LL++T P+ V +Y+G+ D
Sbjct: 47 GNVEFTQDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAG 106
Query: 406 VAYPLTVNFL 415
Y LTV L
Sbjct: 107 SLYELTVRLL 116
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 304 IINGDFNKSTIFHTLTNFTNYFNYLVPVADNTSDVLMEELFKNTAFRQAVHLGNATFHSD 363
I G N+ F L N N +VP D+ L+E+ F A QAV +G + +
Sbjct: 290 IGEGRINRELAFDILANLWIKTNEIVPAFDS----LLEQYFSGQATNQAVTIGGCDIYGN 345
Query: 364 DTVEK--FLKSDVMSSVKIW---IEILLNSTNP 391
D + +L +V +++ + + +N +P
Sbjct: 346 DATNELTYLMLEVTDRLRLRQPNVHVRINKGSP 378
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 394 KVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYY---QNDIAGYVKNVNKN 450
+V Y+G D +V T L L+ K ++ WY + ++ G+
Sbjct: 68 RVWVYSGDTDSVVPVSSTRRSLAALELPVKTSW-----YPWYMAPTEREVGGWSVQYEGL 122
Query: 451 FYEVLVRNAGHMVPKDQSEWAFDLITRFTHG 481
Y V VR AGH+VP + AF L +F G
Sbjct: 123 TY-VTVRGAGHLVPVHRPAQAFLLFKQFLKG 152
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta
Length = 919
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 34/132 (25%)
Query: 299 EAFDQIING--DFNKSTIFH----------TLTNFTNYFNYLVPVADNTSDVLMEELFKN 346
+A ++NG D N ST+ L N T + NYL A N+SD +E
Sbjct: 53 DAEQSVLNGIKDENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQE---- 108
Query: 347 TAFRQAVHLGNATF-HSDDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDII 405
+ VH N TF H+ D++E V+S IW + K+ F+ I
Sbjct: 109 -QINKFVHYLNETFDHAIDSIE------VVSKQSIW------GYSGDTKLPFWK----IY 151
Query: 406 VAYPLTVNFLKT 417
V YP VN L+T
Sbjct: 152 VTYPHMVNKLRT 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,526,351
Number of Sequences: 62578
Number of extensions: 698721
Number of successful extensions: 1915
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 37
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)