Query psy6387
Match_columns 483
No_of_seqs 272 out of 1517
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 16:35:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1282|consensus 100.0 2E-107 4E-112 843.0 10.3 395 56-482 24-448 (454)
2 PF00450 Peptidase_S10: Serine 100.0 4E-101 8E-106 805.3 1.0 390 67-481 7-415 (415)
3 PLN02209 serine carboxypeptida 100.0 1.4E-98 3E-103 784.1 12.5 394 58-482 21-435 (437)
4 PTZ00472 serine carboxypeptida 100.0 1.6E-97 4E-102 784.7 13.3 392 66-482 42-459 (462)
5 PLN03016 sinapoylglucose-malat 100.0 8.9E-98 2E-102 778.1 8.8 382 68-482 34-431 (433)
6 PLN02213 sinapoylglucose-malat 100.0 4.1E-73 8.9E-78 574.3 1.0 300 154-482 1-317 (319)
7 KOG1283|consensus 100.0 7.7E-71 1.7E-75 529.1 9.8 377 73-480 5-412 (414)
8 COG2939 Carboxypeptidase C (ca 100.0 3.4E-68 7.4E-73 544.6 8.8 389 68-481 73-490 (498)
9 TIGR01250 pro_imino_pep_2 prol 98.6 2.4E-08 5.2E-13 97.1 4.6 130 71-253 2-132 (288)
10 TIGR03611 RutD pyrimidine util 98.6 2.7E-08 5.9E-13 95.3 2.3 116 91-254 2-117 (257)
11 PRK10673 acyl-CoA esterase; Pr 98.2 4.2E-07 9E-12 88.1 1.2 104 99-250 11-114 (255)
12 PRK03204 haloalkane dehalogena 98.2 7.4E-07 1.6E-11 89.0 2.9 59 392-479 227-285 (286)
13 PHA02857 monoglyceride lipase; 98.2 1E-06 2.3E-11 86.8 3.3 124 86-253 9-133 (276)
14 PLN02385 hydrolase; alpha/beta 98.1 1.4E-06 3.1E-11 89.4 3.5 127 86-252 70-197 (349)
15 PLN02824 hydrolase, alpha/beta 98.1 2E-06 4.4E-11 85.7 4.4 104 106-252 30-137 (294)
16 TIGR03056 bchO_mg_che_rel puta 98.1 2.3E-06 5.1E-11 83.5 3.5 107 103-254 26-132 (278)
17 TIGR03343 biphenyl_bphD 2-hydr 98.0 8.8E-06 1.9E-10 80.1 6.6 59 392-480 223-281 (282)
18 TIGR02427 protocat_pcaD 3-oxoa 98.0 3.8E-06 8.1E-11 79.6 3.1 59 392-480 193-251 (251)
19 PLN02298 hydrolase, alpha/beta 98.0 7.1E-06 1.5E-10 83.4 5.1 137 72-253 33-170 (330)
20 PRK00870 haloalkane dehalogena 97.8 2.1E-05 4.6E-10 78.8 5.8 130 70-251 18-149 (302)
21 PRK03592 haloalkane dehalogena 97.8 1.5E-05 3.2E-10 79.5 3.8 105 104-254 26-130 (295)
22 PLN02894 hydrolase, alpha/beta 97.8 1.3E-05 2.9E-10 84.1 3.4 109 103-252 103-211 (402)
23 PF12697 Abhydrolase_6: Alpha/ 97.7 4.5E-06 9.8E-11 77.5 -1.1 104 108-255 1-104 (228)
24 TIGR01738 bioH putative pimelo 97.7 6.5E-05 1.4E-09 70.8 6.8 58 392-479 188-245 (245)
25 PLN02652 hydrolase; alpha/beta 97.7 1.8E-05 4E-10 82.8 3.1 128 86-253 119-246 (395)
26 PLN02679 hydrolase, alpha/beta 97.7 4.1E-05 8.8E-10 79.1 5.6 64 392-481 292-356 (360)
27 PRK10349 carboxylesterase BioH 97.6 4.9E-05 1.1E-09 74.0 4.5 59 392-480 196-254 (256)
28 PLN02578 hydrolase 97.5 2.5E-05 5.5E-10 80.4 1.1 76 153-251 111-186 (354)
29 TIGR03695 menH_SHCHC 2-succiny 97.5 5E-05 1.1E-09 71.5 2.8 105 105-252 1-105 (251)
30 PLN03087 BODYGUARD 1 domain co 97.4 0.00012 2.5E-09 78.4 4.2 121 88-250 186-307 (481)
31 PLN03084 alpha/beta hydrolase 97.4 9E-05 1.9E-09 77.3 2.9 134 65-252 98-232 (383)
32 PRK10749 lysophospholipase L2; 97.4 0.00025 5.4E-09 72.3 5.5 67 392-481 259-328 (330)
33 PRK14875 acetoin dehydrogenase 97.3 0.00058 1.2E-08 70.1 8.0 57 392-481 314-370 (371)
34 PF10340 DUF2424: Protein of u 97.3 0.00013 2.9E-09 74.8 3.0 133 89-256 105-239 (374)
35 KOG4409|consensus 97.3 0.00019 4.2E-09 72.2 3.7 87 150-255 112-198 (365)
36 KOG4178|consensus 97.3 0.00019 4.1E-09 71.8 3.2 60 392-480 258-318 (322)
37 PLN02980 2-oxoglutarate decarb 97.0 0.00033 7.1E-09 85.6 2.2 66 392-481 1568-1638(1655)
38 PLN02511 hydrolase 97.0 0.0029 6.2E-08 66.2 8.9 109 87-223 81-191 (388)
39 TIGR01249 pro_imino_pep_1 prol 96.4 0.002 4.3E-08 64.8 2.5 126 73-253 6-131 (306)
40 TIGR01607 PST-A Plasmodium sub 96.4 0.0013 2.9E-08 67.1 1.3 96 153-253 73-186 (332)
41 COG1506 DAP2 Dipeptidyl aminop 96.2 0.0036 7.7E-08 69.5 3.8 114 81-218 369-486 (620)
42 PRK10985 putative hydrolase; P 96.0 0.015 3.2E-07 59.1 7.1 46 392-467 255-300 (324)
43 PF00561 Abhydrolase_1: alpha/ 95.7 0.0029 6.4E-08 59.3 0.2 78 156-252 2-79 (230)
44 PRK05077 frsA fermentation/res 95.7 0.0092 2E-07 63.0 3.8 80 154-253 222-301 (414)
45 PLN02872 triacylglycerol lipas 94.3 0.012 2.7E-07 61.6 0.2 60 392-480 325-387 (395)
46 PRK11126 2-succinyl-6-hydroxy- 94.3 0.027 5.8E-07 53.8 2.5 100 105-251 2-101 (242)
47 PLN02442 S-formylglutathione h 94.2 0.064 1.4E-06 53.5 4.8 44 200-255 138-181 (283)
48 TIGR02821 fghA_ester_D S-formy 94.0 0.048 1E-06 54.1 3.6 42 202-255 135-176 (275)
49 TIGR02240 PHA_depoly_arom poly 93.6 0.055 1.2E-06 53.2 3.2 117 87-253 11-127 (276)
50 PRK07581 hypothetical protein; 92.7 0.022 4.9E-07 57.9 -1.1 59 392-480 275-334 (339)
51 PLN02211 methyl indole-3-aceta 92.7 0.043 9.2E-07 54.4 0.8 57 392-479 211-267 (273)
52 PRK08775 homoserine O-acetyltr 92.6 0.017 3.8E-07 59.0 -2.2 61 392-481 277-338 (343)
53 TIGR01840 esterase_phb esteras 92.0 0.077 1.7E-06 50.3 1.6 21 203-223 93-113 (212)
54 TIGR03101 hydr2_PEP hydrolase, 91.8 0.15 3.4E-06 50.5 3.6 128 87-257 9-139 (266)
55 PRK06489 hypothetical protein; 91.8 0.14 3.1E-06 52.7 3.5 59 392-481 292-356 (360)
56 PLN02965 Probable pheophorbida 91.8 0.051 1.1E-06 52.8 0.1 59 392-480 193-251 (255)
57 TIGR02240 PHA_depoly_arom poly 91.6 0.022 4.9E-07 56.0 -2.6 59 392-481 207-265 (276)
58 KOG1454|consensus 91.5 0.031 6.6E-07 57.1 -1.8 60 392-481 264-323 (326)
59 KOG1515|consensus 91.5 0.13 2.8E-06 52.7 2.6 135 86-256 70-211 (336)
60 COG0596 MhpC Predicted hydrola 91.2 0.21 4.5E-06 46.2 3.6 105 105-254 21-125 (282)
61 PLN02965 Probable pheophorbida 91.2 0.03 6.4E-07 54.5 -2.2 76 154-251 30-106 (255)
62 PRK10115 protease 2; Provision 91.0 0.12 2.7E-06 58.1 2.2 136 86-257 425-564 (686)
63 PRK08775 homoserine O-acetyltr 90.3 0.2 4.4E-06 51.1 2.9 76 153-253 98-174 (343)
64 TIGR01392 homoserO_Ac_trn homo 90.3 0.068 1.5E-06 54.8 -0.7 63 392-480 288-351 (351)
65 PRK10566 esterase; Provisional 90.2 0.11 2.5E-06 49.9 0.9 63 392-482 186-248 (249)
66 TIGR00976 /NonD putative hydro 89.9 0.51 1.1E-05 51.7 5.8 129 87-255 6-135 (550)
67 PRK05855 short chain dehydroge 88.6 0.27 5.9E-06 53.4 2.5 98 87-220 12-109 (582)
68 KOG1455|consensus 88.5 0.48 1E-05 47.3 3.8 112 86-223 36-147 (313)
69 PF00326 Peptidase_S9: Prolyl 88.4 0.057 1.2E-06 51.0 -2.7 93 152-257 12-104 (213)
70 PF06500 DUF1100: Alpha/beta h 88.2 0.17 3.6E-06 53.0 0.4 81 153-253 217-297 (411)
71 PRK07581 hypothetical protein; 88.2 0.34 7.3E-06 49.3 2.7 84 153-252 70-159 (339)
72 PRK00175 metX homoserine O-ace 88.0 0.078 1.7E-06 55.2 -2.2 64 392-481 309-373 (379)
73 cd00707 Pancreat_lipase_like P 87.8 0.087 1.9E-06 52.4 -1.9 82 153-251 65-146 (275)
74 KOG2100|consensus 87.8 0.5 1.1E-05 53.8 3.9 138 87-255 507-647 (755)
75 TIGR03100 hydr1_PEP hydrolase, 85.5 0.54 1.2E-05 46.5 2.4 79 154-253 57-135 (274)
76 PRK06489 hypothetical protein; 85.0 0.19 4.1E-06 51.8 -1.3 130 87-251 49-188 (360)
77 COG2267 PldB Lysophospholipase 84.1 0.59 1.3E-05 47.1 1.9 128 86-255 18-145 (298)
78 PRK06765 homoserine O-acetyltr 83.7 0.19 4.1E-06 52.7 -1.9 65 392-482 323-388 (389)
79 PF08386 Abhydrolase_4: TAP-li 83.1 0.19 4.1E-06 42.3 -1.8 59 392-480 34-92 (103)
80 PLN00021 chlorophyllase 82.1 0.53 1.1E-05 47.8 0.7 42 204-252 125-166 (313)
81 PRK00175 metX homoserine O-ace 81.7 1.6 3.4E-05 45.4 4.1 132 87-252 32-182 (379)
82 PRK10162 acetyl esterase; Prov 81.5 0.55 1.2E-05 47.6 0.6 45 204-254 153-197 (318)
83 KOG2382|consensus 79.2 0.55 1.2E-05 47.4 -0.3 31 450-480 281-311 (315)
84 PRK05855 short chain dehydroge 77.5 0.63 1.4E-05 50.6 -0.5 58 392-480 233-290 (582)
85 cd00312 Esterase_lipase Estera 77.5 2 4.4E-05 46.1 3.4 21 203-223 174-194 (493)
86 KOG1838|consensus 76.0 1.6 3.5E-05 45.6 2.0 123 87-252 104-236 (409)
87 COG3509 LpqC Poly(3-hydroxybut 74.6 4 8.7E-05 40.8 4.2 106 87-224 44-163 (312)
88 KOG2564|consensus 73.9 1.3 2.8E-05 43.9 0.7 88 103-219 72-160 (343)
89 TIGR03230 lipo_lipase lipoprot 73.1 1.5 3.2E-05 46.7 0.9 66 154-224 73-138 (442)
90 PRK11126 2-succinyl-6-hydroxy- 68.0 1.2 2.6E-05 42.3 -1.0 31 450-480 210-240 (242)
91 PRK10566 esterase; Provisional 63.1 0.9 2E-05 43.6 -3.0 109 90-224 13-126 (249)
92 PF10503 Esterase_phd: Esteras 59.4 8.8 0.00019 36.9 3.2 35 190-224 82-116 (220)
93 PF00326 Peptidase_S9: Prolyl 59.2 0.28 6.1E-06 46.2 -7.2 62 392-479 144-206 (213)
94 PLN02454 triacylglycerol lipas 58.3 1.5 3.2E-05 46.0 -2.5 68 182-254 206-273 (414)
95 COG0657 Aes Esterase/lipase [L 57.1 7.9 0.00017 38.8 2.5 62 187-256 132-195 (312)
96 COG4099 Predicted peptidase [G 56.6 22 0.00048 35.8 5.4 32 84-115 168-201 (387)
97 PRK11071 esterase YqiA; Provis 55.5 3.9 8.4E-05 38.1 0.0 32 190-224 49-80 (190)
98 PRK11460 putative hydrolase; P 55.3 1.5 3.3E-05 42.2 -2.9 62 392-479 148-209 (232)
99 PF03583 LIP: Secretory lipase 53.4 2 4.3E-05 43.1 -2.5 62 392-478 219-282 (290)
100 PRK11460 putative hydrolase; P 53.0 6.7 0.00015 37.7 1.2 22 203-224 101-122 (232)
101 PF05577 Peptidase_S28: Serine 50.7 6.2 0.00013 41.7 0.6 64 154-219 59-127 (434)
102 TIGR03100 hydr1_PEP hydrolase, 49.9 3.6 7.7E-05 40.6 -1.3 31 450-480 242-273 (274)
103 PF11288 DUF3089: Protein of u 49.4 5.3 0.00011 38.0 -0.1 39 184-224 76-114 (207)
104 COG0400 Predicted esterase [Ge 48.1 8.7 0.00019 36.6 1.1 58 185-255 80-137 (207)
105 PLN02211 methyl indole-3-aceta 47.8 3.3 7.1E-05 40.9 -1.9 107 103-252 16-122 (273)
106 PF03283 PAE: Pectinacetyleste 47.3 34 0.00074 35.5 5.4 133 88-228 35-179 (361)
107 PF00975 Thioesterase: Thioest 46.5 5 0.00011 37.8 -0.8 76 155-252 28-104 (229)
108 COG0596 MhpC Predicted hydrola 46.4 3.8 8.2E-05 37.6 -1.7 29 451-479 251-279 (282)
109 TIGR01249 pro_imino_pep_1 prol 45.4 3.9 8.5E-05 40.8 -1.8 25 392-416 248-272 (306)
110 PF10230 DUF2305: Uncharacteri 44.7 9.6 0.00021 37.7 0.8 116 105-252 2-122 (266)
111 TIGR01836 PHA_synth_III_C poly 43.3 3.9 8.4E-05 41.8 -2.3 60 392-480 286-348 (350)
112 KOG4391|consensus 43.3 41 0.00088 32.5 4.7 122 88-254 65-186 (300)
113 KOG3079|consensus 42.4 15 0.00033 34.3 1.7 16 103-118 5-20 (195)
114 COG0400 Predicted esterase [Ge 42.2 3.3 7.2E-05 39.5 -2.7 28 392-419 146-173 (207)
115 PF02129 Peptidase_S15: X-Pro 41.5 6.3 0.00014 38.7 -1.0 97 154-274 57-153 (272)
116 KOG2281|consensus 41.1 28 0.0006 38.6 3.6 114 101-256 638-766 (867)
117 PF01764 Lipase_3: Lipase (cla 40.9 3.4 7.3E-05 35.9 -2.8 60 185-252 47-106 (140)
118 KOG1454|consensus 39.6 37 0.0008 34.6 4.2 66 154-228 86-151 (326)
119 PF02230 Abhydrolase_2: Phosph 39.4 9.3 0.0002 36.1 -0.2 55 189-255 87-143 (216)
120 PF11144 DUF2920: Protein of u 38.8 20 0.00044 37.5 2.2 34 183-216 161-195 (403)
121 PLN02571 triacylglycerol lipas 35.8 7.1 0.00015 41.1 -1.7 70 183-253 205-276 (413)
122 TIGR01838 PHA_synth_I poly(R)- 34.6 6.9 0.00015 42.7 -2.1 83 155-255 221-305 (532)
123 KOG2183|consensus 34.3 18 0.00038 38.0 0.9 64 154-220 111-182 (492)
124 PF00151 Lipase: Lipase; Inte 33.5 5.9 0.00013 40.6 -2.7 71 153-228 103-173 (331)
125 PF09292 Neil1-DNA_bind: Endon 32.6 25 0.00054 23.8 1.1 13 104-116 23-35 (39)
126 PF15613 WHIM2: WSTF, HB1, Itc 32.1 84 0.0018 21.5 3.6 28 87-115 10-37 (38)
127 PF05728 UPF0227: Uncharacteri 31.8 20 0.00042 33.6 0.7 44 201-259 55-98 (187)
128 COG2267 PldB Lysophospholipase 31.3 12 0.00025 37.8 -1.0 62 392-481 228-293 (298)
129 COG4757 Predicted alpha/beta h 31.1 48 0.001 32.4 3.1 65 155-223 58-123 (281)
130 PF06057 VirJ: Bacterial virul 30.6 11 0.00024 35.4 -1.2 68 179-257 45-112 (192)
131 PF05677 DUF818: Chlamydia CHL 30.4 25 0.00055 36.0 1.3 59 153-219 170-229 (365)
132 COG1506 DAP2 Dipeptidyl aminop 29.9 9.5 0.00021 42.5 -2.1 59 392-478 551-609 (620)
133 PF07389 DUF1500: Protein of u 29.8 26 0.00056 28.4 0.9 29 185-215 6-34 (100)
134 PRK05371 x-prolyl-dipeptidyl a 29.1 13 0.00028 42.5 -1.2 91 146-254 271-375 (767)
135 PF12695 Abhydrolase_5: Alpha/ 28.6 4.8 0.0001 34.6 -3.8 28 392-419 104-131 (145)
136 COG0627 Predicted esterase [Ge 27.8 96 0.0021 31.6 4.9 114 104-225 52-172 (316)
137 TIGR01392 homoserO_Ac_trn homo 26.7 1.1E+02 0.0023 31.2 5.1 131 87-252 15-162 (351)
138 PRK13604 luxD acyl transferase 26.7 14 0.0003 37.5 -1.4 124 86-253 18-142 (307)
139 PLN02753 triacylglycerol lipas 26.4 12 0.00025 40.6 -2.0 72 182-253 287-360 (531)
140 PLN02719 triacylglycerol lipas 26.3 12 0.00026 40.4 -2.0 71 183-253 274-346 (518)
141 PF05448 AXE1: Acetyl xylan es 26.1 47 0.001 33.8 2.4 46 194-252 164-209 (320)
142 cd00519 Lipase_3 Lipase (class 25.7 12 0.00027 35.6 -1.9 43 203-252 126-168 (229)
143 PF02230 Abhydrolase_2: Phosph 25.2 3.5 7.6E-05 39.0 -5.8 59 392-480 155-213 (216)
144 PF05990 DUF900: Alpha/beta hy 24.9 14 0.0003 35.7 -1.7 70 184-256 71-141 (233)
145 PRK06762 hypothetical protein; 24.8 47 0.001 29.7 1.9 13 106-118 2-14 (166)
146 KOG2182|consensus 24.5 50 0.0011 35.5 2.2 40 180-219 147-186 (514)
147 PRK05077 frsA fermentation/res 23.7 11 0.00025 39.7 -2.7 58 392-482 355-412 (414)
148 PF07859 Abhydrolase_3: alpha/ 22.7 12 0.00026 34.7 -2.5 64 183-254 47-112 (211)
149 PF00681 Plectin: Plectin repe 21.5 28 0.0006 24.4 -0.3 31 250-280 12-43 (45)
150 PRK10439 enterobactin/ferric e 21.3 38 0.00081 35.8 0.6 19 205-223 288-306 (411)
151 PF07849 DUF1641: Protein of u 21.2 62 0.0013 22.5 1.5 18 338-355 14-31 (42)
152 PF07519 Tannase: Tannase and 21.2 26 0.00056 37.8 -0.7 84 377-481 341-426 (474)
153 cd00741 Lipase Lipase. Lipase 21.1 19 0.0004 32.0 -1.6 26 203-228 26-51 (153)
No 1
>KOG1282|consensus
Probab=100.00 E-value=1.9e-107 Score=842.95 Aligned_cols=395 Identities=33% Similarity=0.592 Sum_probs=330.7
Q ss_pred ccccCccCC-CC----ccceecceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCcccccccccccccc
Q psy6387 56 AKNLSKVNL-PG----LNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPL 130 (483)
Q Consensus 56 a~~~~~v~~-~~----~~~~~ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~ 130 (483)
+.+.++|+. || .++++||||| +|+++.+++||||||||+++| ++|||||||||||||||+.|+|.|+|||
T Consensus 24 ~~~~~~I~~LPG~~~~~~f~~ysGYv----~v~~~~~~~LFYwf~eS~~~P-~~dPlvLWLnGGPGCSSl~G~~~E~GPf 98 (454)
T KOG1282|consen 24 VDEADLIKSLPGQPGPLPFKQYSGYV----TVNESEGRQLFYWFFESENNP-ETDPLVLWLNGGPGCSSLGGLFEENGPF 98 (454)
T ss_pred cchhhhhhcCCCCCCCCCcccccceE----ECCCCCCceEEEEEEEccCCC-CCCCEEEEeCCCCCccchhhhhhhcCCe
Confidence 344455654 65 3699999999 999988999999999999999 9999999999999999999999999999
Q ss_pred ccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEe
Q psy6387 131 MLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVT 210 (483)
Q Consensus 131 ~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~ 210 (483)
+++.|+++ |..|+|||||.||||||||||||||||++++.++.++|+.+|+|+++||++||++||||++|||||+
T Consensus 99 ~v~~~G~t-----L~~N~ySWnk~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~ 173 (454)
T KOG1282|consen 99 RVKYNGKT-----LYLNPYSWNKEANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIA 173 (454)
T ss_pred EEcCCCCc-----ceeCCccccccccEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEe
Confidence 99988776 9999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred ccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcchhhh-hhhhhhhhccccCcchhhhHHHHHHHHHHH
Q psy6387 211 GESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQAMELI 289 (483)
Q Consensus 211 GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~~q~~-~~~~~y~~glid~~~~~~~~~~~~~~~~~i 289 (483)
||||||||||+||++|++.|+. ...+.|||||++||||++|+..|.. +.+|++.||||+++.++.+++.|+.+...+
T Consensus 174 GESYAG~YVP~La~~I~~~N~~--~~~~~iNLkG~~IGNg~td~~~~~~~~~~~a~~h~liSde~~~~l~~~C~~~~~~~ 251 (454)
T KOG1282|consen 174 GESYAGHYVPALAQEILKGNKK--CCKPNINLKGYAIGNGLTDPEIDYNGRIPFAWGHGLISDELYESLKRACDFSSDNY 251 (454)
T ss_pred cccccceehHHHHHHHHhcccc--ccCCcccceEEEecCcccCccccccchhhhhhhcccCCHHHHHHHHHHhccCcccc
Confidence 9999999999999999999873 2467899999999999999999999 999999999999999999999998765322
Q ss_pred hhhh-----hhhHHHHHhhHhcCCCCcceeeeeecccccccceeeecc---------------CCchhHHHHHHhhhhhh
Q psy6387 290 LQWK-----WNEAYEAFDQIINGDFNKSTIFHTLTNFTNYFNYLVPVA---------------DNTSDVLMEELFKNTAF 349 (483)
Q Consensus 290 ~~~~-----~~~a~~~~d~~~~g~~~~~s~~~~~tg~~~~yn~~~~~~---------------~p~~~~~~~~yLN~~~V 349 (483)
.... +.++.+..+....+ +..++++++..|. +++-......|||+++|
T Consensus 252 ~~~~~~~~~C~~~~~~~~~~~~~------------~i~~y~i~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~ylN~~~V 319 (454)
T KOG1282|consen 252 ANVDPSNTKCNKAVEEFDSKTTG------------DIDNYYILTPDCYPTSYELKKPTDCYGYDPCLSDYAEKYLNRPEV 319 (454)
T ss_pred cccCCchhHHHHHHHHHHHHHhc------------cCchhhhcchhhccccccccccccccccCCchhhhHHHhcCCHHH
Confidence 1111 12233322211111 0111222221122 12222334889999999
Q ss_pred hHhhhcCCc---eecCchHHHHHHhhhhhhhHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhh
Q psy6387 350 RQAVHLGNA---TFHSDDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAY 426 (483)
Q Consensus 350 r~ALhV~~~---~~~~~~~V~~~l~~D~~~s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f 426 (483)
|+||||+.. +|..|+.+...-..|...++.+.+..++.+ +++|||||+||.|++||+.||+.|+++|+++..
T Consensus 320 rkALh~~~~~~~~W~~Cn~~v~~~~~~~~~sm~p~~~~~~~~--~~~rvliysGD~D~~~p~~gt~~~i~~L~~~~~--- 394 (454)
T KOG1282|consen 320 RKALHANKTSIGKWERCNDEVNYNYNDDIKSMLPIHKKLIAS--GGYRVLIYSGDHDLVVPFLGTQAWIKSLNLSIT--- 394 (454)
T ss_pred HHHhCCCCCCCCcccccChhhhcccccCccchHHHHHHHhhc--CceEEEEEeCCcceeCcchhhHHHHHhccCccc---
Confidence 999999765 498755544333556677888888888875 149999999999999999999999999996655
Q ss_pred ccCCcceeeee-cccchhhhcccchhhHHhhhcCCcccccCCccchhhhhhhcccCC
Q psy6387 427 KTAPRTAWYYQ-NDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHGS 482 (483)
Q Consensus 427 ~~a~~~~w~~~-~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a~~mi~~fl~~~ 482 (483)
++++||+++ +|||||+|+|+ +|||+||+|||||||.|||++|+.||++||.|+
T Consensus 395 --~~~~pW~~~~~qvaG~~~~Y~-~ltf~tVrGaGH~VP~~~p~~al~m~~~fl~g~ 448 (454)
T KOG1282|consen 395 --DEWRPWYHKGGQVAGYTKTYG-GLTFATVRGAGHMVPYDKPESALIMFQRFLNGQ 448 (454)
T ss_pred --cCccCCccCCCceeeeEEEec-CEEEEEEeCCcccCCCCCcHHHHHHHHHHHcCC
Confidence 456899995 89999999999 899999999999999999999999999999986
No 2
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=100.00 E-value=3.7e-101 Score=805.27 Aligned_cols=390 Identities=37% Similarity=0.674 Sum_probs=312.1
Q ss_pred ccceecceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCccccccc
Q psy6387 67 LNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDT 146 (483)
Q Consensus 67 ~~~~~ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~ 146 (483)
.++++||||| +|+++.+++||||||||+++| +++|||||||||||||||.|+|.|+|||++++++. .+++.
T Consensus 7 ~~~~~~sGyl----~~~~~~~~~lfyw~~~s~~~~-~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~----~~l~~ 77 (415)
T PF00450_consen 7 VPFKQYSGYL----PVNDNENAHLFYWFFESRNDP-EDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGP----YTLED 77 (415)
T ss_dssp SSSEEEEEEE----EECTTTTEEEEEEEEE-SSGG-CSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTST----SEEEE
T ss_pred CCceEEEEEE----ecCCCCCcEEEEEEEEeCCCC-CCccEEEEecCCceeccccccccccCceEEeeccc----ccccc
Confidence 3689999999 888778899999999999999 99999999999999999999999999999994431 12999
Q ss_pred ccccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEE
Q psy6387 147 RKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTI 226 (483)
Q Consensus 147 n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I 226 (483)
|++||++.+|||||||||||||||+.+.+.+..+++++|+++++||++||++||+++++||||+||||||||||++|.+|
T Consensus 78 n~~sW~~~an~l~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i 157 (415)
T PF00450_consen 78 NPYSWNKFANLLFIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYI 157 (415)
T ss_dssp -TT-GGGTSEEEEE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHH
T ss_pred cccccccccceEEEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhh
Confidence 99999999999999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcccccccceeeecCCCCCcchhhh-hhhhhhhhccccCcchhhhHHHHHHHHHHHhhhhhhhHHHHHhhHh
Q psy6387 227 HLNNPEQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQII 305 (483)
Q Consensus 227 ~~~n~~~~~~~~~inLkGi~IGNg~~dp~~q~~-~~~~~y~~glid~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~d~~~ 305 (483)
+++|.+ ...++||||||+||||++||..|.. +.+|+|.+|+|++++++.+++.|+.+..|... ...|.+..+.+.
T Consensus 158 ~~~~~~--~~~~~inLkGi~IGng~~dp~~~~~s~~~~~~~~gli~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~ 233 (415)
T PF00450_consen 158 LQQNKK--GDQPKINLKGIAIGNGWIDPRIQYNSYADYAYYHGLIDDQQYDDLNKACEACPQCQKA--ITECAAALDELS 233 (415)
T ss_dssp HHHTCC----STTSEEEEEEEESE-SBHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHTTSHSSSCC--HHHHHHHHHHHH
T ss_pred hhcccc--ccccccccccceecCccccccccceeecccccccCcccHHHHHHHHHHhhccccccch--hhHHHHHHHhhh
Confidence 998863 3347899999999999999999999 99999999999999999998888543111110 011111122111
Q ss_pred cCCCCcceeeeeecccccccceeeec-------------cCCchhHHHHHHhhhhhhhHhhhcC---CceecC-chHH-H
Q psy6387 306 NGDFNKSTIFHTLTNFTNYFNYLVPV-------------ADNTSDVLMEELFKNTAFRQAVHLG---NATFHS-DDTV-E 367 (483)
Q Consensus 306 ~g~~~~~s~~~~~tg~~~~yn~~~~~-------------~~p~~~~~~~~yLN~~~Vr~ALhV~---~~~~~~-~~~V-~ 367 (483)
.. .......++.+.||++.+| ..+.+...+..|||+++||+||||+ +.+|.. +..| .
T Consensus 234 ~~-----~~~~~~~~~~n~Ydi~~~~~~~~~~~~~~~~~~~~~~~~~~~~yln~~~Vr~aL~v~~~~~~~w~~~~~~V~~ 308 (415)
T PF00450_consen 234 CQ-----YAISQCNGGINPYDIRQPCYNPSRSSYDNSPSNDPPDDDYLEAYLNRPDVREALHVPVDSNVNWQSCNDAVNF 308 (415)
T ss_dssp HH-----CHHHHHHTTSETTSTTSEETT-SHCTTCCCCTTTTTCHHHHHHHHTSHHHHHHTT-STTTSSS--SB-HHHHH
T ss_pred hh-----cccccccCCcceeeeeccccccccccccccccccccchhhHHHHhccHHHHHhhCCCcccCCcccccCccccc
Confidence 00 0001123456778888777 2234567899999999999999996 457886 5567 4
Q ss_pred HHHhhhhhhhHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcc
Q psy6387 368 KFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNV 447 (483)
Q Consensus 368 ~~l~~D~~~s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~ 447 (483)
..+..|.+.++.+.++.||++ ++|||||+||+|++||+.||++|+++|+|+++++|+.++++ .+++++||+|++
T Consensus 309 ~~~~~d~~~~~~~~l~~lL~~---~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~---~~~~~~G~~k~~ 382 (415)
T PF00450_consen 309 NWLYDDFMPSSIPDLPELLDN---GIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRK---VNGQVAGYVKQY 382 (415)
T ss_dssp HCCTCCC-SBCHHHHHHHHHT---T-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEE---TTCSEEEEEEEE
T ss_pred ccccccccccchhhhhhhhhc---cceeEEeccCCCEEEEeccchhhhhccccCccccccccccc---ccccccceeEEe
Confidence 445788889999999999997 89999999999999999999999999999999999777666 588999999999
Q ss_pred cchhhHHhhhcCCcccccCCccchhhhhhhcccC
Q psy6387 448 NKNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHG 481 (483)
Q Consensus 448 ~~nltfv~V~~AGHmvP~DqP~~a~~mi~~fl~~ 481 (483)
+ ||||++|++||||||+|||++|++||++||+|
T Consensus 383 ~-~ltf~~V~~AGHmvP~dqP~~a~~m~~~fl~g 415 (415)
T PF00450_consen 383 G-NLTFVTVRGAGHMVPQDQPEAALQMFRRFLKG 415 (415)
T ss_dssp T-TEEEEEETT--SSHHHHSHHHHHHHHHHHHCT
T ss_pred c-cEEEEEEcCCcccChhhCHHHHHHHHHHHhcC
Confidence 9 99999999999999999999999999999986
No 3
>PLN02209 serine carboxypeptidase
Probab=100.00 E-value=1.4e-98 Score=784.14 Aligned_cols=394 Identities=26% Similarity=0.458 Sum_probs=319.1
Q ss_pred ccCccCC-CCc----cceecceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCcccccccccccccccc
Q psy6387 58 NLSKVNL-PGL----NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLML 132 (483)
Q Consensus 58 ~~~~v~~-~~~----~~~~ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v 132 (483)
..+.|+. ||. ++++||||+ +|+++.+++||||||||+++| +++||+||||||||||||.|+|.|+|||++
T Consensus 21 ~~~~v~~lpg~~~~~~~~~~sGy~----~v~~~~~~~lf~~f~es~~~~-~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~ 95 (437)
T PLN02209 21 SGSIVKFLPGFKGPLPFELETGYI----GIGEEENVQFFYYFIKSDKNP-QEDPLIIWLNGGPGCSCLSGLFFENGPLAL 95 (437)
T ss_pred ccCeeecCCCCCCCCCeeEEEEEE----EecCCCCeEEEEEEEecCCCC-CCCCEEEEECCCCcHHHhhhHHHhcCCcee
Confidence 3344665 763 689999999 998777899999999999999 999999999999999999999999999999
Q ss_pred ccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEecc
Q psy6387 133 NKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGE 212 (483)
Q Consensus 133 ~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GE 212 (483)
+.++..++.+++++|++|||+.+|||||||||||||||+.++..+. ++++.|+++++||++||++||+|+++||||+||
T Consensus 96 ~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~~-~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GE 174 (437)
T PLN02209 96 KNKVYNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPIERT-SDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGD 174 (437)
T ss_pred ccCCCCCCcccceeCCCchhhcCcEEEecCCCCCCccCCCCCCCcc-CCHHHHHHHHHHHHHHHHhCccccCCCEEEEec
Confidence 8774322234599999999999999999999999999987765554 445667999999999999999999999999999
Q ss_pred ccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcchhhh-hhhhhhhhccccCcchhhhHHHHHH-------
Q psy6387 213 SYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQ------- 284 (483)
Q Consensus 213 SYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~~q~~-~~~~~y~~glid~~~~~~~~~~~~~------- 284 (483)
||||||||.+|++|+++|++ ..+.+||||||+||||++||..|.. +.+|+|.+|||++++++.+++.|..
T Consensus 175 SYaG~yvP~~a~~i~~~~~~--~~~~~inl~Gi~igng~td~~~q~~~~~~y~~~~glI~~~~~~~~~~~c~~~~~~~~~ 252 (437)
T PLN02209 175 SYSGMIVPALVHEISKGNYI--CCNPPINLQGYVLGNPITHIEFEQNFRIPYAHGMSLISDELYESLKRICKGNYFSVDP 252 (437)
T ss_pred CcCceehHHHHHHHHhhccc--ccCCceeeeeEEecCcccChhhhhhhHHHHHhccCCCCHHHHHHHHHhcccccccCCC
Confidence 99999999999999988753 3466899999999999999999988 9999999999999999999988754
Q ss_pred ----HHHHHhhhhhhhHHHHHhhHhcCCCCcceeeeeecccccccceeeeccCCchhHHHHHHhhhhhhhHhhhcCCc--
Q psy6387 285 ----AMELILQWKWNEAYEAFDQIINGDFNKSTIFHTLTNFTNYFNYLVPVADNTSDVLMEELFKNTAFRQAVHLGNA-- 358 (483)
Q Consensus 285 ----~~~~i~~~~~~~a~~~~d~~~~g~~~~~s~~~~~tg~~~~yn~~~~~~~p~~~~~~~~yLN~~~Vr~ALhV~~~-- 358 (483)
|.+.+++ ...+...++. ...++....+...+++ +.+|. +.+...+..|||+++||+||||+..
T Consensus 253 ~~~~C~~~i~~------~~~~~~~~~~---~~~~~~~c~~~~~~~~-~~~c~-~~~~~~~~~ylN~~~V~~aL~v~~~~~ 321 (437)
T PLN02209 253 SNKKCLKLVEE------YHKCTDNINS---HHTLIANCDDSNTQHI-SPDCY-YYPYHLVECWANNESVREALHVDKGSI 321 (437)
T ss_pred ChHHHHHHHHH------HHHHhhcCCc---cccccccccccccccC-CCCcc-cccHHHHHHHhCCHHHHHHhCCCCCCC
Confidence 2222221 1112111110 0011222222222222 23363 2224568899999999999999853
Q ss_pred -eecCchHHHHHHhhhhhhhHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeee
Q psy6387 359 -TFHSDDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQ 437 (483)
Q Consensus 359 -~~~~~~~V~~~l~~D~~~s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~ 437 (483)
.|..|+. ...+..|.+.++...++.|++ ++|||||+||.|++||+.||++|+++|+|+++++| +||+++
T Consensus 322 ~~w~~~~~-~~~~~~d~~~~~~~~~~~l~~----girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~-----~~w~~~ 391 (437)
T PLN02209 322 GEWIRDHR-GIPYKSDIRSSIPYHMNNSIN----GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDW-----RPWMIK 391 (437)
T ss_pred CCCccccc-hhhcccchhhhHHHHHHHHhc----CceEEEEECCccccCCcHhHHHHHHhcCCccCCCe-----eeeEEC
Confidence 4654432 223567888776666666654 99999999999999999999999999999998764 799999
Q ss_pred cccchhhhcccch-hhHHhhhcCCcccccCCccchhhhhhhcccCC
Q psy6387 438 NDIAGYVKNVNKN-FYEVLVRNAGHMVPKDQSEWAFDLITRFTHGS 482 (483)
Q Consensus 438 ~~vaGy~k~~~~n-ltfv~V~~AGHmvP~DqP~~a~~mi~~fl~~~ 482 (483)
++++||+|+++ | |||++|+||||||| |||++|++||++|+.|+
T Consensus 392 ~q~aG~vk~y~-n~Ltfv~V~~AGHmVp-~qP~~al~m~~~fi~~~ 435 (437)
T PLN02209 392 GQIAGYTRTYS-NKMTFATVKGGGHTAE-YLPEESSIMFQRWISGQ 435 (437)
T ss_pred CEeeeEEEEeC-CceEEEEEcCCCCCcC-cCHHHHHHHHHHHHcCC
Confidence 99999999999 7 99999999999998 79999999999999886
No 4
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=100.00 E-value=1.6e-97 Score=784.69 Aligned_cols=392 Identities=30% Similarity=0.555 Sum_probs=347.1
Q ss_pred CccceecceeEEeeccccC-CCceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCccccc
Q psy6387 66 GLNITSYSGFFRVNSTVDK-NHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYL 144 (483)
Q Consensus 66 ~~~~~~ysGyl~~~~~v~~-~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l 144 (483)
..++++||||| +|+. ..++|||||||||+++| +++||+||||||||||||.|+|.|||||++++++.+ +
T Consensus 42 ~~~~~~~sGy~----~v~~~~~~~~lFyw~~~s~~~~-~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~-----~ 111 (462)
T PTZ00472 42 DPSVNQWSGYF----DIPGNQTDKHYFYWAFGPRNGN-PEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGD-----I 111 (462)
T ss_pred CCCCcceeEEE----EeCCCCCCceEEEEEEEcCCCC-CCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCc-----e
Confidence 34689999999 8864 45789999999999999 999999999999999999999999999999988654 9
Q ss_pred ccccccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeE
Q psy6387 145 DTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 145 ~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~ 224 (483)
+.|++||++.+||||||||+||||||+... .+..+++++|+|+++||+.||++||++++++|||+||||||+|+|.+|.
T Consensus 112 ~~n~~sW~~~~~~l~iDqP~G~G~S~~~~~-~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~ 190 (462)
T PTZ00472 112 YNNTYSWNNEAYVIYVDQPAGVGFSYADKA-DYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAY 190 (462)
T ss_pred eECCcccccccCeEEEeCCCCcCcccCCCC-CCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHH
Confidence 999999999999999999999999998654 5677889999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcccccccceeeecCCCCCcchhhh-hhhhhhh-------hccccCcchhhhHHHHHHHHHHHhhhhh--
Q psy6387 225 TIHLNNPEQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQ-------LGLVDDNGKKAIEEKEKQAMELILQWKW-- 294 (483)
Q Consensus 225 ~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~~q~~-~~~~~y~-------~glid~~~~~~~~~~~~~~~~~i~~~~~-- 294 (483)
+|+++|+. ....+||||||+|||||+||..|.. |.+|+|. +|+|++++++.+++.+..|.+.+++|+.
T Consensus 191 ~i~~~n~~--~~~~~inLkGi~IGNg~~dp~~q~~~~~~~a~~~~~~~~~~~li~~~~~~~~~~~~~~c~~~~~~c~~~~ 268 (462)
T PTZ00472 191 RINMGNKK--GDGLYINLAGLAVGNGLTDPYTQYASYPRLAWDWCKEKLGAPCVSEEAYDEMSSMVPACQKKIKECNSNP 268 (462)
T ss_pred HHHhhccc--cCCceeeeEEEEEeccccChhhhcccHHHHhhhcccccCCCCccCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99998863 3457899999999999999999998 9999995 5899999999999988888877776542
Q ss_pred -----hh--HHHHHhhHhcCCCCcceeeeeecccccccceeeeccCCc--hhHHHHHHhhhhhhhHhhhcCCceecC-ch
Q psy6387 295 -----NE--AYEAFDQIINGDFNKSTIFHTLTNFTNYFNYLVPVADNT--SDVLMEELFKNTAFRQAVHLGNATFHS-DD 364 (483)
Q Consensus 295 -----~~--a~~~~d~~~~g~~~~~s~~~~~tg~~~~yn~~~~~~~p~--~~~~~~~yLN~~~Vr~ALhV~~~~~~~-~~ 364 (483)
.| |...|+.++. .+. .+..+.||++.+|..+. ....+..|||+++||+||||+..+|.. +.
T Consensus 269 ~~~~~~c~~a~~~c~~~~~-------~~~--~~g~n~Ydi~~~c~~~~c~~~~~~~~yLN~~~Vq~AL~v~~~~w~~c~~ 339 (462)
T PTZ00472 269 DDADSSCSVARALCNEYIA-------VYS--ATGLNNYDIRKPCIGPLCYNMDNTIAFMNREDVQSSLGVKPATWQSCNM 339 (462)
T ss_pred CCcchHHHHHHHHHHHHHH-------HHH--hcCCChhheeccCCCCCccCHHHHHHHhCCHHHHHHhCCCCCCceeCCH
Confidence 23 3344444332 121 23367899998886542 346689999999999999998778996 67
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCccee-eeecccchh
Q psy6387 365 TVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAW-YYQNDIAGY 443 (483)
Q Consensus 365 ~V~~~l~~D~~~s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w-~~~~~vaGy 443 (483)
.|...+..|.++++.+.++.||++ ++|||||+||.|++||+.|+++|+++|+|+++++|++++|+|| .++++++||
T Consensus 340 ~V~~~~~~D~~~~~~~~l~~LL~~---gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~ 416 (462)
T PTZ00472 340 EVNLMFEMDWMKNFNYTVPGLLED---GVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGL 416 (462)
T ss_pred HHHHHhhhccccchHHHHHHHHhc---CceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceE
Confidence 788888899999999999999997 9999999999999999999999999999999999999999999 468899999
Q ss_pred hhccc----chhhHHhhhcCCcccccCCccchhhhhhhcccCC
Q psy6387 444 VKNVN----KNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHGS 482 (483)
Q Consensus 444 ~k~~~----~nltfv~V~~AGHmvP~DqP~~a~~mi~~fl~~~ 482 (483)
+|+++ .||+|++|++||||||.|||+++++||++|+.|+
T Consensus 417 vk~~~~~~~~~l~~~~V~~AGH~vp~d~P~~~~~~i~~fl~~~ 459 (462)
T PTZ00472 417 VRSAASNTSSGFSFVQVYNAGHMVPMDQPAVALTMINRFLRNR 459 (462)
T ss_pred EEEEecccCCCeEEEEECCCCccChhhHHHHHHHHHHHHHcCC
Confidence 99986 2799999999999999999999999999999886
No 5
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=100.00 E-value=8.9e-98 Score=778.10 Aligned_cols=382 Identities=24% Similarity=0.426 Sum_probs=310.2
Q ss_pred cceecceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccc
Q psy6387 68 NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTR 147 (483)
Q Consensus 68 ~~~~ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n 147 (483)
++++||||+ +|+++.+++||||||||+++| +++|||||||||||||||.|+|.|+|||+++.+......+.+++|
T Consensus 34 ~~~~~sGy~----~v~~~~~~~lfy~f~es~~~~-~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n 108 (433)
T PLN03016 34 PFELETGYI----GIGEDENVQFFYYFIKSENNP-KEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFST 108 (433)
T ss_pred CeeEEEEEE----EecCCCCeEEEEEEEecCCCc-ccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeC
Confidence 589999999 888777899999999999999 999999999999999999999999999998754211122459999
Q ss_pred cccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEe
Q psy6387 148 KTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIH 227 (483)
Q Consensus 148 ~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~ 227 (483)
++||++.||||||||||||||||++++..+. ++++.|+++++||++||++||+|+++||||+||||||||||++|++|+
T Consensus 109 ~~sW~~~anllfiDqPvGtGfSy~~~~~~~~-~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~ 187 (433)
T PLN03016 109 TYSWTKMANIIFLDQPVGSGFSYSKTPIDKT-GDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEIS 187 (433)
T ss_pred CCchhhcCcEEEecCCCCCCccCCCCCCCcc-CCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHH
Confidence 9999999999999999999999987765443 444566999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccceeeecCCCCCcchhhh-hhhhhhhhccccCcchhhhHHHHHHHHHHHhhhhhhhHHHHHhhHhc
Q psy6387 228 LNNPEQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQIIN 306 (483)
Q Consensus 228 ~~n~~~~~~~~~inLkGi~IGNg~~dp~~q~~-~~~~~y~~glid~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~d~~~~ 306 (483)
++|++ ..+.+||||||+||||++||..|.. +.+|+|.+||||+++++.+++.|+.+...+.... ..|....+.+.
T Consensus 188 ~~n~~--~~~~~inLkGi~iGNg~t~~~~~~~~~~~y~~~~glI~~~~~~~i~~~c~~~~~~~~~~~-~~C~~~~~~~~- 263 (433)
T PLN03016 188 QGNYI--CCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSN-TQCLKLTEEYH- 263 (433)
T ss_pred hhccc--ccCCcccceeeEecCCCcCchhhhhhHHHHHHhcCCCCHHHHHHHHHHhccccccCCCch-HHHHHHHHHHH-
Confidence 98863 3457899999999999999999988 9999999999999999999988865432211001 11111111111
Q ss_pred CCCCcceeeeeecccccccceeee-----------ccCCchhHHHHHHhhhhhhhHhhhcCC---ceecC-chHHHHHHh
Q psy6387 307 GDFNKSTIFHTLTNFTNYFNYLVP-----------VADNTSDVLMEELFKNTAFRQAVHLGN---ATFHS-DDTVEKFLK 371 (483)
Q Consensus 307 g~~~~~s~~~~~tg~~~~yn~~~~-----------~~~p~~~~~~~~yLN~~~Vr~ALhV~~---~~~~~-~~~V~~~l~ 371 (483)
+.++..+.||++.+ |.. .+...+..|||+++||+||||+. .+|.. +..|. +.
T Consensus 264 ----------~~~~~~n~yni~~~~~~~~~~~~~~c~~-~~~~~~~~ylN~~~V~~aL~v~~~~~~~w~~cn~~v~--~~ 330 (433)
T PLN03016 264 ----------KCTAKINIHHILTPDCDVTNVTSPDCYY-YPYHLIECWANDESVREALHIEKGSKGKWARCNRTIP--YN 330 (433)
T ss_pred ----------HHhcCCChhhccCCcccccccCCCcccc-cchHHHHHHhCCHHHHHHhCCCCCCCCCCccCCcccc--cc
Confidence 11122333444322 211 11346789999999999999963 47886 44554 55
Q ss_pred hhhhhhHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchh
Q psy6387 372 SDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNF 451 (483)
Q Consensus 372 ~D~~~s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nl 451 (483)
.|.+.++...++.+++ ++|||||+||.|++||+.||++|+++|+|++.++ |+||+++++++||+|+++++|
T Consensus 331 ~d~~~~~~~~~~~l~~----~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~-----~~~w~~~~~~~G~vk~y~n~l 401 (433)
T PLN03016 331 HDIVSSIPYHMNNSIS----GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHN-----WRPWMINNQIAGYTRAYSNKM 401 (433)
T ss_pred cccchhhHHHHHHHhc----CceEEEEECCccccCCcHhHHHHHHhCCCCCCCC-----cccccCCCEeeeEEEEeCCce
Confidence 6777655555555544 8999999999999999999999999999999876 579999999999999997249
Q ss_pred hHHhhhcCCcccccCCccchhhhhhhcccCC
Q psy6387 452 YEVLVRNAGHMVPKDQSEWAFDLITRFTHGS 482 (483)
Q Consensus 452 tfv~V~~AGHmvP~DqP~~a~~mi~~fl~~~ 482 (483)
||++|++|||||| |||++|++||++||.|+
T Consensus 402 tfv~V~~AGHmVp-~qP~~al~m~~~Fi~~~ 431 (433)
T PLN03016 402 TFATIKAGGHTAE-YRPNETFIMFQRWISGQ 431 (433)
T ss_pred EEEEEcCCCCCCC-CCHHHHHHHHHHHHcCC
Confidence 9999999999998 79999999999999986
No 6
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=100.00 E-value=4.1e-73 Score=574.33 Aligned_cols=300 Identities=23% Similarity=0.367 Sum_probs=236.4
Q ss_pred cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCC
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQ 233 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~ 233 (483)
.||||||||||||||||++++..++ +++++|+|++.||++||++||+|+++||||+||||||||||++|++|+++|++
T Consensus 1 ~aNvLfiDqPvGvGfSy~~~~~~~~-~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~- 78 (319)
T PLN02213 1 MANIIFLDQPVGSGFSYSKTPIDKT-GDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYI- 78 (319)
T ss_pred CccEEEecCCCCCCCCCCCCCCCcc-ccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccc-
Confidence 4899999999999999987664444 44555699999999999999999999999999999999999999999998763
Q ss_pred CCcccccccceeeecCCCCCcchhhh-hhhhhhhhccccCcchhhhHHHHHHHHHHHhhhhhhhHHHHHhhHhcCCCCcc
Q psy6387 234 GSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQIINGDFNKS 312 (483)
Q Consensus 234 ~~~~~~inLkGi~IGNg~~dp~~q~~-~~~~~y~~glid~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~d~~~~g~~~~~ 312 (483)
....+||||||+|||||++|..|.. +.+|+|.+||||+++++.+++.|..+...+.... ..|.+..+.+.
T Consensus 79 -~~~~~inLkGi~IGNg~t~~~~~~~~~~~~~~~~gli~~~~~~~~~~~c~~~~~~~~~~~-~~c~~~~~~~~------- 149 (319)
T PLN02213 79 -CCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSN-TQCLKLTEEYH------- 149 (319)
T ss_pred -ccCCceeeeEEEeCCCCCCccccchhHhhHHHhcCCCCHHHHHHHHHhcCCCccCCCCCc-HHHHHHHHHHH-------
Confidence 3456899999999999999999988 9999999999999999999887753321111001 11111111111
Q ss_pred eeeeeecccccccceeee-----------ccCCchhHHHHHHhhhhhhhHhhhcCC---ceecC-chHHHHHHhhhhhhh
Q psy6387 313 TIFHTLTNFTNYFNYLVP-----------VADNTSDVLMEELFKNTAFRQAVHLGN---ATFHS-DDTVEKFLKSDVMSS 377 (483)
Q Consensus 313 s~~~~~tg~~~~yn~~~~-----------~~~p~~~~~~~~yLN~~~Vr~ALhV~~---~~~~~-~~~V~~~l~~D~~~s 377 (483)
+.++..+.||++.+ |.. .....+..|||+++||+||||+. .+|.. +..|. +..|.+.+
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~~~~~~~~ylN~~~V~~aL~v~~~~~~~w~~c~~~v~--~~~d~~~~ 222 (319)
T PLN02213 150 ----KCTAKINIHHILTPDCDVTNVTSPDCYY-YPYHLIECWANDESVREALHIEKGSKGKWARCNRTIP--YNHDIVSS 222 (319)
T ss_pred ----HHHhcCCHhhcccCcccCccCCCCCccc-chhHHHHHHhCCHHHHHHhCcCCCCCCCCccCCcccc--cccccccc
Confidence 00111222333211 321 11346899999999999999963 47886 44554 55677665
Q ss_pred HHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccch-hhHHhh
Q psy6387 378 VKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKN-FYEVLV 456 (483)
Q Consensus 378 ~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~n-ltfv~V 456 (483)
+...++.|++ ++||||||||.|++||+.|+++|+++|+|+++++ |+||+++++++||+|+++ | |||++|
T Consensus 223 ~~~~~~~l~~----~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~-----~~~w~~~~~~~G~vk~y~-~~ltf~~V 292 (319)
T PLN02213 223 IPYHMNNSIS----GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHN-----WRPWMINNQIAGYTRAYS-NKMTFATI 292 (319)
T ss_pred hHHHHHHHhc----CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCC-----CccccCCCEeeeEEEEec-CcceEEEE
Confidence 5555555544 8999999999999999999999999999999866 579999999999999998 6 999999
Q ss_pred hcCCcccccCCccchhhhhhhcccCC
Q psy6387 457 RNAGHMVPKDQSEWAFDLITRFTHGS 482 (483)
Q Consensus 457 ~~AGHmvP~DqP~~a~~mi~~fl~~~ 482 (483)
+||||||| |||++|++||++||.|+
T Consensus 293 ~~AGHmV~-~qP~~al~m~~~fi~~~ 317 (319)
T PLN02213 293 KAGGHTAE-YRPNETFIMFQRWISGQ 317 (319)
T ss_pred cCCCCCCC-cCHHHHHHHHHHHHcCC
Confidence 99999998 79999999999999886
No 7
>KOG1283|consensus
Probab=100.00 E-value=7.7e-71 Score=529.10 Aligned_cols=377 Identities=29% Similarity=0.517 Sum_probs=330.5
Q ss_pred ceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCcccc-ccccccccccccccccCCCcccccccccccc
Q psy6387 73 SGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM-FGLFQEHGPLMLNKTKKNQTLPYLDTRKTHW 151 (483)
Q Consensus 73 sGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl-~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW 151 (483)
.||+ +|. .+.|||+|.+.+..+-+...|+.||||||||+||. +|+|.|+||...+ +++|+.+|
T Consensus 5 wg~v----~vr--~~a~~F~wly~~~~~~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~----------~~~r~~TW 68 (414)
T KOG1283|consen 5 WGYV----DVR--TGAHMFWWLYYATANVKSERPLALWLQGGPGASSTGFGNFEELGPLDLD----------GSPRDWTW 68 (414)
T ss_pred ccce----eee--cCceEEEEEeeeccccccCCCeeEEecCCCCCCCcCccchhhcCCcccC----------CCcCCchh
Confidence 6899 775 36899999998875543789999999999999986 8999999999754 88999999
Q ss_pred cccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCC
Q psy6387 152 TKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNP 231 (483)
Q Consensus 152 ~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~ 231 (483)
-+.|+|||||+|||+||||.+..+.|+++.+++|.|+.+.|++||..||||+.+||||+-|||||+..+.+|..+....+
T Consensus 69 lk~adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk 148 (414)
T KOG1283|consen 69 LKDADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIK 148 (414)
T ss_pred hhhccEEEecCCCcCceeeecCcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCCCcccccccceeeecCCCCCcchhhh-hhhhhhhhccccCcchhhhHHHHHHHHHHHhhhhhhhHHHHHhhHhcCCCC
Q psy6387 232 EQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQIINGDFN 310 (483)
Q Consensus 232 ~~~~~~~~inLkGi~IGNg~~dp~~q~~-~~~~~y~~glid~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~d~~~~g~~~ 310 (483)
.++.+.|+.|+++|+.||+|..-.. +++|+|+.+++|+++.+..++...+|...+.++.|.+|.......-+
T Consensus 149 ---~G~i~~nf~~VaLGDSWISP~D~V~SWGP~L~~~S~LDD~GLds~ns~A~k~~~~v~~g~~~~AT~~Wg~~e~---- 221 (414)
T KOG1283|consen 149 ---RGEIKLNFIGVALGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSGAEKGKGGVDGGKWGGATGGWGGGEN---- 221 (414)
T ss_pred ---cCceeecceeEEccCcccChhHhhhcchHHHHhhhhhcccCccchhhhHHhhcccccCCccccccccccCcCc----
Confidence 6789999999999999999998777 99999999999999999999988899999999988887665432211
Q ss_pred cceeeeeecccccccceeeeccC--------------------------CchhHHHHHHhhhhhhhHhhhcC--CceecC
Q psy6387 311 KSTIFHTLTNFTNYFNYLVPVAD--------------------------NTSDVLMEELFKNTAFRQAVHLG--NATFHS 362 (483)
Q Consensus 311 ~~s~~~~~tg~~~~yn~~~~~~~--------------------------p~~~~~~~~yLN~~~Vr~ALhV~--~~~~~~ 362 (483)
+....+...+.||++.++.. +.+.+.+.+++|-+ ||++|++. ...|-.
T Consensus 222 ---li~~~sn~VdfYNil~~t~~d~~~~ss~~~~~~~~~~rrl~~~~~~~~~~D~L~~lM~g~-vrkkLgIip~~~~wGg 297 (414)
T KOG1283|consen 222 ---LISRESNGVDFYNILTKTLGDQYSLSSRAAMTPEEVMRRLLVRFVGDEDRDKLSDLMNGP-VRKKLGIIPGGVKWGG 297 (414)
T ss_pred ---ceeecccCcceeeeeccCCCcchhhhhhhhcchHHHHHHHHhccCcchhHHHHHHHhccc-ccccccccCCCCcccC
Confidence 22222334556666642211 11234567777665 88999983 457874
Q ss_pred -chHHHHHHhhhhhhhHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccc
Q psy6387 363 -DDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIA 441 (483)
Q Consensus 363 -~~~V~~~l~~D~~~s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~va 441 (483)
+.+|+..+..|+|+++...+.+||++ +++|.||||++|.||++.|+++|+++|+|++...|+..+|.-.+++...+
T Consensus 298 qsg~vFt~lq~dFMKPvi~~VdeLL~~---Gv~V~VynG~lDlIc~T~G~~AWv~~l~w~~~p~f~~~~r~~~~~s~~l~ 374 (414)
T KOG1283|consen 298 QSGDVFTKLQGDFMKPVISKVDELLNN---GVNVTVYNGQLDLICATMGTEAWVEKLEWSAKPSFQVSPRVGITVSRVLE 374 (414)
T ss_pred cCCchHHHhhhhhcccHHHHHHHHHhC---CceEEEEecccchhhcccchhhhhhheecCCCCccccceeeeccceeecc
Confidence 88899999999999999999999998 99999999999999999999999999999999999999999888888999
Q ss_pred hhhhcccchhhHHhhhcCCcccccCCccchhhhhhhccc
Q psy6387 442 GYVKNVNKNFYEVLVRNAGHMVPKDQSEWAFDLITRFTH 480 (483)
Q Consensus 442 Gy~k~~~~nltfv~V~~AGHmvP~DqP~~a~~mi~~fl~ 480 (483)
||.|+|+ ||.|..|..||||||.|+|+.|.+|++.+.+
T Consensus 375 gy~ktyk-nl~f~wilraghmvp~Dnp~~a~hmlr~vtk 412 (414)
T KOG1283|consen 375 GYEKTYK-NLSFFWILRAGHMVPADNPAAASHMLRHVTK 412 (414)
T ss_pred hhhhhhc-cceeEEeecccCcccCCCHHHHhhheeeccc
Confidence 9999999 9999999999999999999999999998764
No 8
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-68 Score=544.63 Aligned_cols=389 Identities=23% Similarity=0.386 Sum_probs=310.8
Q ss_pred cceecceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccc-c
Q psy6387 68 NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLD-T 146 (483)
Q Consensus 68 ~~~~ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~-~ 146 (483)
.+++|+||. .+.. .+|||+|+++++| +++|+||||||||||||+.|+|.|+||.+|+.+.+. .. .
T Consensus 73 pv~~~~g~~----d~ed----~~ffy~fe~~ndp-~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P-----~~~~ 138 (498)
T COG2939 73 PVRDYTGYP----DAED----FFFFYTFESPNDP-ANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSP-----SYPD 138 (498)
T ss_pred chhhccCCc----ccce----eEEEEEecCCCCC-CCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCC-----CCCC
Confidence 488999997 4432 2999999999999 999999999999999999999999999999988541 22 6
Q ss_pred ccccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccC--ceEEeccccccccccceeE
Q psy6387 147 RKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSN--DFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 147 n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~--~~yi~GESYaG~yvP~lA~ 224 (483)
||+||+.++||||||||||||||++.. +....+-..+.+|++.|++.||+.||++.+. ++||+||||||+|+|.||+
T Consensus 139 NP~SW~~~adLvFiDqPvGTGfS~a~~-~e~~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 139 NPGSWLDFADLVFIDQPVGTGFSRALG-DEKKKDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred CccccccCCceEEEecCcccCcccccc-cccccchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 999999999999999999999999733 3467778889999999999999999999988 9999999999999999999
Q ss_pred EEecCCCCCCCcccccccceeeecCC-CCCcchhhh-hhhhhhhhcccc----CcchhhhHHHHHH--HHHHHhhhh---
Q psy6387 225 TIHLNNPEQGSEKDKINLKGIAIGNG-LCDPLNMMV-YSSYLYQLGLVD----DNGKKAIEEKEKQ--AMELILQWK--- 293 (483)
Q Consensus 225 ~I~~~n~~~~~~~~~inLkGi~IGNg-~~dp~~q~~-~~~~~y~~glid----~~~~~~~~~~~~~--~~~~i~~~~--- 293 (483)
.|+++|. ..+-.+||++++|||| ++||..|+. |..++...+..+ .+.+.++++.|.. |..++..+.
T Consensus 218 ~L~~~~~---~~~~~~nlssvligng~~t~Pl~~~~~y~~~a~~~~~~~~~l~~e~~~~~~~~~~~d~~~~l~~g~~~~~ 294 (498)
T COG2939 218 ELLEDNI---ALNGNVNLSSVLIGNGLWTDPLTQYLTYEPIAAEKGPYDGVLSSEECTKAEKYCAGDYCLALMKGCYDSG 294 (498)
T ss_pred HHHHhcc---ccCCceEeeeeeecCCcccChhHHHHHhhhhHhhcCCCCCcCcHHHHHHHHHHhhhhhHhhhccCCCCch
Confidence 9999874 4455799999999999 999999988 899988665544 3444555554433 333333221
Q ss_pred -hhhHHHHHhhHhcCCCCcceeeeeec-ccccccceeeeccCCc-------hhHHHHHHhhhhhhhHhhhcCCceecC-c
Q psy6387 294 -WNEAYEAFDQIINGDFNKSTIFHTLT-NFTNYFNYLVPVADNT-------SDVLMEELFKNTAFRQAVHLGNATFHS-D 363 (483)
Q Consensus 294 -~~~a~~~~d~~~~g~~~~~s~~~~~t-g~~~~yn~~~~~~~p~-------~~~~~~~yLN~~~Vr~ALhV~~~~~~~-~ 363 (483)
+..|...... +.+ ..+..+.+.. .+.|.|+++..|.++. ......+|++...+++++......|.. .
T Consensus 295 ~~~~c~~~~~~-~~~--~~~~~~~r~~~~~~n~y~~r~~~~d~g~~~~~y~~~~~~ld~~~~~~~~~~~~~~~d~~~~c~ 371 (498)
T COG2939 295 SLQPCENASAY-LTG--LMREYVGRAGGRLLNVYDIREECRDPGLGGSCYDTLSTSLDYFNFDPEQEVNDPEVDNISGCT 371 (498)
T ss_pred hhhHHHHHHHH-HHh--cchhhhccccccccccccchhhcCCCCcccccccceeeccccccccchhccccccccchhccc
Confidence 1111111111 111 0111222221 2467889888888764 234567888877778877765555765 4
Q ss_pred hHHHHHH---hhhhhhhHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeee--ec
Q psy6387 364 DTVEKFL---KSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYY--QN 438 (483)
Q Consensus 364 ~~V~~~l---~~D~~~s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~--~~ 438 (483)
.++...+ ..++++.....+..++.+ ++.+++|.|+.|.+|++.+++.|..+|+|.++.+|..+...+|.. ..
T Consensus 372 t~a~~~f~~~~~~~~~~~~~~~~~~lv~---~~~~~~~~gd~d~icn~~~~~a~~~~Lkw~~~~g~~d~~~~~~~~~~t~ 448 (498)
T COG2939 372 TDAMTDFLTFTGGWAKPSRYLVLNLLVN---NVWILLYAGDKDFICNLRGNMALDPKLKWLGASGYFDASTPFFWSRLTL 448 (498)
T ss_pred hHHHHhhhhhcCCcccccHHHHhhhhhc---CCceeeeecCchhHhhhhhhcccCCcceEeeecchhhhcCCCcccccch
Confidence 4555554 578888888888888887 999999999999999999999999999999999999999889876 67
Q ss_pred ccchhhhcccchhhHHhhhcCCcccccCCccchhhhhhhcccC
Q psy6387 439 DIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHG 481 (483)
Q Consensus 439 ~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a~~mi~~fl~~ 481 (483)
+..|-+++++ |++|+.++.||||||.|+|+.+++|++.|+.+
T Consensus 449 e~~~~~~s~~-n~~~~r~y~aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 449 EEMGGYKSYR-NLTFLRIYEAGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred hhcccccccC-CceEEEEecCcceeecCChHHHHHHHHHHHhh
Confidence 8899999999 99999999999999999999999999999875
No 9
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.64 E-value=2.4e-08 Score=97.13 Aligned_cols=130 Identities=25% Similarity=0.326 Sum_probs=75.2
Q ss_pred ecceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCccccc-cccccccccccccccCCCcccccccccc
Q psy6387 71 SYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMF-GLFQEHGPLMLNKTKKNQTLPYLDTRKT 149 (483)
Q Consensus 71 ~ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~-Glf~E~GP~~v~~~~~~~~~~~l~~n~~ 149 (483)
+..+++ +++. ..+.|.-+.. + ...|.||++.||||+++.. ..+.+ . +..
T Consensus 2 ~~~~~~----~~~~---~~~~~~~~~~---~-~~~~~vl~~hG~~g~~~~~~~~~~~----------~------l~~--- 51 (288)
T TIGR01250 2 QIEGII----TVDG---GYHLFTKTGG---E-GEKIKLLLLHGGPGMSHEYLENLRE----------L------LKE--- 51 (288)
T ss_pred Ccccee----cCCC---CeEEEEeccC---C-CCCCeEEEEcCCCCccHHHHHHHHH----------H------HHh---
Confidence 345667 6542 3344433322 2 3457889999999998642 11111 0 111
Q ss_pred cccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecC
Q psy6387 150 HWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLN 229 (483)
Q Consensus 150 sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~ 229 (483)
+..+++-+|.| |.|.|.......-..+.++.++++ ..+.+ ++..++++|.|+|+||..+..+|..-
T Consensus 52 ---~g~~vi~~d~~-G~G~s~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~liG~S~Gg~ia~~~a~~~--- 117 (288)
T TIGR01250 52 ---EGREVIMYDQL-GCGYSDQPDDSDELWTIDYFVDEL----EEVRE---KLGLDKFYLLGHSWGGMLAQEYALKY--- 117 (288)
T ss_pred ---cCCEEEEEcCC-CCCCCCCCCcccccccHHHHHHHH----HHHHH---HcCCCcEEEEEeehHHHHHHHHHHhC---
Confidence 24789999966 999885322111011223333333 33333 34556799999999999888877532
Q ss_pred CCCCCCcccccccceeeecCCCCC
Q psy6387 230 NPEQGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 230 n~~~~~~~~~inLkGi~IGNg~~d 253 (483)
+..++++++.++...
T Consensus 118 ---------p~~v~~lvl~~~~~~ 132 (288)
T TIGR01250 118 ---------GQHLKGLIISSMLDS 132 (288)
T ss_pred ---------ccccceeeEeccccc
Confidence 124788888887654
No 10
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.55 E-value=2.7e-08 Score=95.32 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=71.3
Q ss_pred EEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceee
Q psy6387 91 FFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSF 170 (483)
Q Consensus 91 Ffwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy 170 (483)
+|..+..+ . .+.|+||+++|.+|.+.....+.+ . + .+..+++-+|.| |.|.|-
T Consensus 2 ~~~~~~~~--~-~~~~~iv~lhG~~~~~~~~~~~~~----------~------l-------~~~~~vi~~D~~-G~G~S~ 54 (257)
T TIGR03611 2 HYELHGPP--D-ADAPVVVLSSGLGGSGSYWAPQLD----------V------L-------TQRFHVVTYDHR-GTGRSP 54 (257)
T ss_pred EEEEecCC--C-CCCCEEEEEcCCCcchhHHHHHHH----------H------H-------HhccEEEEEcCC-CCCCCC
Confidence 45554432 2 567999999999776654321110 0 2 235799999966 999984
Q ss_pred eeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCC
Q psy6387 171 VEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNG 250 (483)
Q Consensus 171 ~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg 250 (483)
...... .+.++.+++ +.+|++ ++...++++.|+|+||..+..+|.+.- -.++++++-++
T Consensus 55 ~~~~~~--~~~~~~~~~----~~~~i~---~~~~~~~~l~G~S~Gg~~a~~~a~~~~------------~~v~~~i~~~~ 113 (257)
T TIGR03611 55 GELPPG--YSIAHMADD----VLQLLD---ALNIERFHFVGHALGGLIGLQLALRYP------------ERLLSLVLINA 113 (257)
T ss_pred CCCccc--CCHHHHHHH----HHHHHH---HhCCCcEEEEEechhHHHHHHHHHHCh------------HHhHHheeecC
Confidence 322211 133344444 444443 234567999999999998888875321 14788888887
Q ss_pred CCCc
Q psy6387 251 LCDP 254 (483)
Q Consensus 251 ~~dp 254 (483)
+..+
T Consensus 114 ~~~~ 117 (257)
T TIGR03611 114 WSRP 117 (257)
T ss_pred CCCC
Confidence 7654
No 11
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.20 E-value=4.2e-07 Score=88.06 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=68.7
Q ss_pred ccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeeccccc
Q psy6387 99 EKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYS 178 (483)
Q Consensus 99 ~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~ 178 (483)
+.+ .+.|.||+++|.+|.+...+-+.+ .+.+..+++.+|.| |-|.|.... .
T Consensus 11 ~~~-~~~~~iv~lhG~~~~~~~~~~~~~-----------------------~l~~~~~vi~~D~~-G~G~s~~~~--~-- 61 (255)
T PRK10673 11 QNP-HNNSPIVLVHGLFGSLDNLGVLAR-----------------------DLVNDHDIIQVDMR-NHGLSPRDP--V-- 61 (255)
T ss_pred CCC-CCCCCEEEECCCCCchhHHHHHHH-----------------------HHhhCCeEEEECCC-CCCCCCCCC--C--
Confidence 345 678999999999887655422211 12245799999966 888884321 1
Q ss_pred ccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCC
Q psy6387 179 RNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNG 250 (483)
Q Consensus 179 ~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg 250 (483)
.+-++.++|+.++|.+ +...+++|.|+|.||..+..+|.+-- -.++++++.++
T Consensus 62 ~~~~~~~~d~~~~l~~-------l~~~~~~lvGhS~Gg~va~~~a~~~~------------~~v~~lvli~~ 114 (255)
T PRK10673 62 MNYPAMAQDLLDTLDA-------LQIEKATFIGHSMGGKAVMALTALAP------------DRIDKLVAIDI 114 (255)
T ss_pred CCHHHHHHHHHHHHHH-------cCCCceEEEEECHHHHHHHHHHHhCH------------hhcceEEEEec
Confidence 2344566666666644 34467999999999998888875421 14778877663
No 12
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.20 E-value=7.4e-07 Score=88.98 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=45.7
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.++|||..|+.|.+++.....+. ..+... +.++.+|.+|||+++.++|+..
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~----------------------------~~~~ip-~~~~~~i~~aGH~~~~e~Pe~~ 277 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPR----------------------------LRATFP-DHVLVELPNAKHFIQEDAPDRI 277 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHH----------------------------HHHhcC-CCeEEEcCCCcccccccCHHHH
Confidence 69999999999988754321111 112233 6778899999999999999999
Q ss_pred hhhhhhcc
Q psy6387 472 FDLITRFT 479 (483)
Q Consensus 472 ~~mi~~fl 479 (483)
.++|.+|+
T Consensus 278 ~~~i~~~~ 285 (286)
T PRK03204 278 AAAIIERF 285 (286)
T ss_pred HHHHHHhc
Confidence 99999997
No 13
>PHA02857 monoglyceride lipase; Provisional
Probab=98.17 E-value=1e-06 Score=86.76 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=73.4
Q ss_pred CceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccc-cceEEEeeCCc
Q psy6387 86 HSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTK-NHNVIYIDNPV 164 (483)
Q Consensus 86 ~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~-~anlLyiDqPv 164 (483)
.+..|++.+++... ..+|+||.+.|..++|..+-.+ .+ .+.+ ...++-+| ..
T Consensus 9 ~g~~l~~~~~~~~~---~~~~~v~llHG~~~~~~~~~~~---~~--------------------~l~~~g~~via~D-~~ 61 (276)
T PHA02857 9 DNDYIYCKYWKPIT---YPKALVFISHGAGEHSGRYEEL---AE--------------------NISSLGILVFSHD-HI 61 (276)
T ss_pred CCCEEEEEeccCCC---CCCEEEEEeCCCccccchHHHH---HH--------------------HHHhCCCEEEEcc-CC
Confidence 36789998887753 4458999999996665543111 11 1222 36789999 55
Q ss_pred cCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccce
Q psy6387 165 GTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKG 244 (483)
Q Consensus 165 GtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkG 244 (483)
|.|.|-... ....+-.+..+|+.+++..+-+ .+...+++|.|+|.||.-+..+|.+- + -+++|
T Consensus 62 G~G~S~~~~--~~~~~~~~~~~d~~~~l~~~~~---~~~~~~~~lvG~S~GG~ia~~~a~~~----p--------~~i~~ 124 (276)
T PHA02857 62 GHGRSNGEK--MMIDDFGVYVRDVVQHVVTIKS---TYPGVPVFLLGHSMGATISILAAYKN----P--------NLFTA 124 (276)
T ss_pred CCCCCCCcc--CCcCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEEcCchHHHHHHHHHhC----c--------cccce
Confidence 999983211 0011111222333333322222 23456899999999998766666321 1 14899
Q ss_pred eeecCCCCC
Q psy6387 245 IAIGNGLCD 253 (483)
Q Consensus 245 i~IGNg~~d 253 (483)
+++.+|.++
T Consensus 125 lil~~p~~~ 133 (276)
T PHA02857 125 MILMSPLVN 133 (276)
T ss_pred EEEeccccc
Confidence 999988765
No 14
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=98.13 E-value=1.4e-06 Score=89.37 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=73.8
Q ss_pred CceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccc-cceEEEeeCCc
Q psy6387 86 HSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTK-NHNVIYIDNPV 164 (483)
Q Consensus 86 ~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~-~anlLyiDqPv 164 (483)
.+..+|+..+...+ . +.+|+||.++|..+.++.. +.+..+ .+.+ -.+++-+|.|
T Consensus 70 ~g~~l~~~~~~p~~-~-~~~~~iv~lHG~~~~~~~~--~~~~~~--------------------~l~~~g~~v~~~D~~- 124 (349)
T PLN02385 70 RGVEIFSKSWLPEN-S-RPKAAVCFCHGYGDTCTFF--FEGIAR--------------------KIASSGYGVFAMDYP- 124 (349)
T ss_pred CCCEEEEEEEecCC-C-CCCeEEEEECCCCCccchH--HHHHHH--------------------HHHhCCCEEEEecCC-
Confidence 35678876654332 2 3468999999975543321 111111 1222 4789999976
Q ss_pred cCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccce
Q psy6387 165 GTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKG 244 (483)
Q Consensus 165 GtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkG 244 (483)
|.|.|-.. .++..+-++.++|+.++++. +..-+++...+++|.|+|.||..+-.+|.+ .+ -.++|
T Consensus 125 G~G~S~~~--~~~~~~~~~~~~dv~~~l~~-l~~~~~~~~~~~~LvGhSmGG~val~~a~~----~p--------~~v~g 189 (349)
T PLN02385 125 GFGLSEGL--HGYIPSFDDLVDDVIEHYSK-IKGNPEFRGLPSFLFGQSMGGAVALKVHLK----QP--------NAWDG 189 (349)
T ss_pred CCCCCCCC--CCCcCCHHHHHHHHHHHHHH-HHhccccCCCCEEEEEeccchHHHHHHHHh----Cc--------chhhh
Confidence 89988421 12323334455555544433 222234455689999999999876655432 11 14789
Q ss_pred eeecCCCC
Q psy6387 245 IAIGNGLC 252 (483)
Q Consensus 245 i~IGNg~~ 252 (483)
+++-++..
T Consensus 190 lVLi~p~~ 197 (349)
T PLN02385 190 AILVAPMC 197 (349)
T ss_pred eeEecccc
Confidence 88888765
No 15
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.13 E-value=2e-06 Score=85.67 Aligned_cols=104 Identities=22% Similarity=0.175 Sum_probs=65.9
Q ss_pred cEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeeccc----ccccC
Q psy6387 106 PVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDL----YSRNE 181 (483)
Q Consensus 106 Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~----~~~~~ 181 (483)
|.||.|+|.++.|.+.-.+.+ . | .+..+++.+|.| |.|.|-..+... ...+.
T Consensus 30 ~~vlllHG~~~~~~~w~~~~~----------~------L-------~~~~~vi~~Dlp-G~G~S~~~~~~~~~~~~~~~~ 85 (294)
T PLN02824 30 PALVLVHGFGGNADHWRKNTP----------V------L-------AKSHRVYAIDLL-GYGYSDKPNPRSAPPNSFYTF 85 (294)
T ss_pred CeEEEECCCCCChhHHHHHHH----------H------H-------HhCCeEEEEcCC-CCCCCCCCccccccccccCCH
Confidence 789999999888876532221 0 2 244689999955 999995332211 11223
Q ss_pred cceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 182 SHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 182 ~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
++.|+ .|..|++ ++...+++|.|+|.||..+-.+|.+-- -.++++++-|+..
T Consensus 86 ~~~a~----~l~~~l~---~l~~~~~~lvGhS~Gg~va~~~a~~~p------------~~v~~lili~~~~ 137 (294)
T PLN02824 86 ETWGE----QLNDFCS---DVVGDPAFVICNSVGGVVGLQAAVDAP------------ELVRGVMLINISL 137 (294)
T ss_pred HHHHH----HHHHHHH---HhcCCCeEEEEeCHHHHHHHHHHHhCh------------hheeEEEEECCCc
Confidence 33344 4444444 334578999999999988777764321 1478999888754
No 16
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.07 E-value=2.3e-06 Score=83.46 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCc
Q psy6387 103 SEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNES 182 (483)
Q Consensus 103 ~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~ 182 (483)
.+.|+||+++|.+|.+..+..+.+ . +. +..+++.+|.| |-|.|-.... ...+-+
T Consensus 26 ~~~~~vv~~hG~~~~~~~~~~~~~----------~------l~-------~~~~vi~~D~~-G~G~S~~~~~--~~~~~~ 79 (278)
T TIGR03056 26 TAGPLLLLLHGTGASTHSWRDLMP----------P------LA-------RSFRVVAPDLP-GHGFTRAPFR--FRFTLP 79 (278)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHH----------H------Hh-------hCcEEEeecCC-CCCCCCCccc--cCCCHH
Confidence 456899999999776554321110 1 22 24789999955 8998843221 112333
Q ss_pred ceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCc
Q psy6387 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDP 254 (483)
Q Consensus 183 ~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp 254 (483)
+.++++. .+.+ ++...+++|.|+|+||..+..+|.+. +-.++++++.++..++
T Consensus 80 ~~~~~l~----~~i~---~~~~~~~~lvG~S~Gg~~a~~~a~~~------------p~~v~~~v~~~~~~~~ 132 (278)
T TIGR03056 80 SMAEDLS----ALCA---AEGLSPDGVIGHSAGAAIALRLALDG------------PVTPRMVVGINAALMP 132 (278)
T ss_pred HHHHHHH----HHHH---HcCCCCceEEEECccHHHHHHHHHhC------------CcccceEEEEcCcccc
Confidence 4444443 3333 23446899999999998777776432 1247888888887654
No 17
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.02 E-value=8.8e-06 Score=80.06 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=47.2
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.++||+..|..|.+++....+.+.+. .. +..++.|.+|||+++.++|+..
T Consensus 223 ~~Pvlli~G~~D~~v~~~~~~~~~~~-----------------------------~~-~~~~~~i~~agH~~~~e~p~~~ 272 (282)
T TIGR03343 223 KAKTLVTWGRDDRFVPLDHGLKLLWN-----------------------------MP-DAQLHVFSRCGHWAQWEHADAF 272 (282)
T ss_pred CCCEEEEEccCCCcCCchhHHHHHHh-----------------------------CC-CCEEEEeCCCCcCCcccCHHHH
Confidence 68999999999999976533333222 22 5666788999999999999999
Q ss_pred hhhhhhccc
Q psy6387 472 FDLITRFTH 480 (483)
Q Consensus 472 ~~mi~~fl~ 480 (483)
.++|.+|+.
T Consensus 273 ~~~i~~fl~ 281 (282)
T TIGR03343 273 NRLVIDFLR 281 (282)
T ss_pred HHHHHHHhh
Confidence 999999985
No 18
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=97.99 E-value=3.8e-06 Score=79.55 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=46.1
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.++||+.+|+.|.+++....+.+.+. .. +.+++++.++||+++.++|+..
T Consensus 193 ~~Pvlii~g~~D~~~~~~~~~~~~~~-----------------------------~~-~~~~~~~~~~gH~~~~~~p~~~ 242 (251)
T TIGR02427 193 AVPTLCIAGDQDGSTPPELVREIADL-----------------------------VP-GARFAEIRGAGHIPCVEQPEAF 242 (251)
T ss_pred CCCeEEEEeccCCcCChHHHHHHHHh-----------------------------CC-CceEEEECCCCCcccccChHHH
Confidence 68999999999999986533333222 22 4556778889999999999999
Q ss_pred hhhhhhccc
Q psy6387 472 FDLITRFTH 480 (483)
Q Consensus 472 ~~mi~~fl~ 480 (483)
.+.++.|+.
T Consensus 243 ~~~i~~fl~ 251 (251)
T TIGR02427 243 NAALRDFLR 251 (251)
T ss_pred HHHHHHHhC
Confidence 999999973
No 19
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.98 E-value=7.1e-06 Score=83.37 Aligned_cols=137 Identities=19% Similarity=0.232 Sum_probs=79.6
Q ss_pred cceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccc
Q psy6387 72 YSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHW 151 (483)
Q Consensus 72 ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW 151 (483)
-.+++ +-. .+..|+|+.+...... ...|+||+++|..+.++ . -+.+ + -..+
T Consensus 33 ~~~~~----~~~--dg~~l~~~~~~~~~~~-~~~~~VvllHG~~~~~~-~-~~~~-----------------~---~~~L 83 (330)
T PLN02298 33 SKSFF----TSP--RGLSLFTRSWLPSSSS-PPRALIFMVHGYGNDIS-W-TFQS-----------------T---AIFL 83 (330)
T ss_pred ccceE----EcC--CCCEEEEEEEecCCCC-CCceEEEEEcCCCCCcc-e-ehhH-----------------H---HHHH
Confidence 36677 432 3677888655332222 34689999999843222 1 0100 0 0012
Q ss_pred cc-cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCC
Q psy6387 152 TK-NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNN 230 (483)
Q Consensus 152 ~~-~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n 230 (483)
++ -.+|+-+|.| |-|.|-. ..++..+.++.++|+..+++..-. -.++...+++|.|+|.||..+-.++.+ .
T Consensus 84 ~~~Gy~V~~~D~r-GhG~S~~--~~~~~~~~~~~~~D~~~~i~~l~~-~~~~~~~~i~l~GhSmGG~ia~~~a~~----~ 155 (330)
T PLN02298 84 AQMGFACFALDLE-GHGRSEG--LRAYVPNVDLVVEDCLSFFNSVKQ-REEFQGLPRFLYGESMGGAICLLIHLA----N 155 (330)
T ss_pred HhCCCEEEEecCC-CCCCCCC--ccccCCCHHHHHHHHHHHHHHHHh-cccCCCCCEEEEEecchhHHHHHHHhc----C
Confidence 33 4789999966 8998832 122333445566777666654332 222334579999999999877655531 1
Q ss_pred CCCCCcccccccceeeecCCCCC
Q psy6387 231 PEQGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 231 ~~~~~~~~~inLkGi~IGNg~~d 253 (483)
+ -.++|+++.+++.+
T Consensus 156 p--------~~v~~lvl~~~~~~ 170 (330)
T PLN02298 156 P--------EGFDGAVLVAPMCK 170 (330)
T ss_pred c--------ccceeEEEeccccc
Confidence 1 14889999888764
No 20
>PRK00870 haloalkane dehalogenase; Provisional
Probab=97.85 E-value=2.1e-05 Score=78.76 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=75.3
Q ss_pred eecceeEEeeccccCCCce--eeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccc
Q psy6387 70 TSYSGFFRVNSTVDKNHSS--ALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTR 147 (483)
Q Consensus 70 ~~ysGyl~~~~~v~~~~~~--~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n 147 (483)
+.-=.|+ .|+...+. .++|.-. .++ +.|.||.++|.|+.+..+-. ..|. |..
T Consensus 18 ~~~~~~~----~~~~~~~~~~~i~y~~~---G~~--~~~~lvliHG~~~~~~~w~~---~~~~-------------L~~- 71 (302)
T PRK00870 18 PFAPHYV----DVDDGDGGPLRMHYVDE---GPA--DGPPVLLLHGEPSWSYLYRK---MIPI-------------LAA- 71 (302)
T ss_pred CCCceeE----eecCCCCceEEEEEEec---CCC--CCCEEEEECCCCCchhhHHH---HHHH-------------HHh-
Confidence 3345678 77653333 4665532 223 46789999999876665422 1111 111
Q ss_pred cccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEe
Q psy6387 148 KTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIH 227 (483)
Q Consensus 148 ~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~ 227 (483)
+..+++.+|.| |-|.|-. .+.....+.++.+ +.+.++++ ++...+++|.|+|+||..+-.+|.+-
T Consensus 72 -----~gy~vi~~Dl~-G~G~S~~-~~~~~~~~~~~~a----~~l~~~l~---~l~~~~v~lvGhS~Gg~ia~~~a~~~- 136 (302)
T PRK00870 72 -----AGHRVIAPDLI-GFGRSDK-PTRREDYTYARHV----EWMRSWFE---QLDLTDVTLVCQDWGGLIGLRLAAEH- 136 (302)
T ss_pred -----CCCEEEEECCC-CCCCCCC-CCCcccCCHHHHH----HHHHHHHH---HcCCCCEEEEEEChHHHHHHHHHHhC-
Confidence 24789999955 9998822 1110011222333 44555554 34556899999999999887777421
Q ss_pred cCCCCCCCcccccccceeeecCCC
Q psy6387 228 LNNPEQGSEKDKINLKGIAIGNGL 251 (483)
Q Consensus 228 ~~n~~~~~~~~~inLkGi~IGNg~ 251 (483)
+ =.++++++-++.
T Consensus 137 ---p--------~~v~~lvl~~~~ 149 (302)
T PRK00870 137 ---P--------DRFARLVVANTG 149 (302)
T ss_pred ---h--------hheeEEEEeCCC
Confidence 1 147788777653
No 21
>PRK03592 haloalkane dehalogenase; Provisional
Probab=97.80 E-value=1.5e-05 Score=79.46 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=66.2
Q ss_pred CCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCcc
Q psy6387 104 EAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESH 183 (483)
Q Consensus 104 ~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~ 183 (483)
+.|.||.++|.|+.+...-.+.+ . | .+...++-+|.| |-|.|-... ..+ +.++
T Consensus 26 ~g~~vvllHG~~~~~~~w~~~~~---~-------------L-------~~~~~via~D~~-G~G~S~~~~-~~~--~~~~ 78 (295)
T PRK03592 26 EGDPIVFLHGNPTSSYLWRNIIP---H-------------L-------AGLGRCLAPDLI-GMGASDKPD-IDY--TFAD 78 (295)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---H-------------H-------hhCCEEEEEcCC-CCCCCCCCC-CCC--CHHH
Confidence 34779999999887766422111 1 2 234589999955 999984321 111 2333
Q ss_pred eeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCc
Q psy6387 184 VGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDP 254 (483)
Q Consensus 184 ~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp 254 (483)
.|+| +.++++ ++...+++|.|+|.||..+-.+|.+.- =.++++++.|+...|
T Consensus 79 ~a~d----l~~ll~---~l~~~~~~lvGhS~Gg~ia~~~a~~~p------------~~v~~lil~~~~~~~ 130 (295)
T PRK03592 79 HARY----LDAWFD---ALGLDDVVLVGHDWGSALGFDWAARHP------------DRVRGIAFMEAIVRP 130 (295)
T ss_pred HHHH----HHHHHH---HhCCCCeEEEEECHHHHHHHHHHHhCh------------hheeEEEEECCCCCC
Confidence 3444 344443 345578999999999988777765321 148999999986544
No 22
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=97.80 E-value=1.3e-05 Score=84.12 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=63.3
Q ss_pred CCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCc
Q psy6387 103 SEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNES 182 (483)
Q Consensus 103 ~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~ 182 (483)
.+.|.||.|+|.++.+.... ++ + ..+.+..+++-+|.| |-|.|-. .+ ....+.+
T Consensus 103 ~~~p~vvllHG~~~~~~~~~---~~----~----------------~~L~~~~~vi~~D~r-G~G~S~~-~~-~~~~~~~ 156 (402)
T PLN02894 103 EDAPTLVMVHGYGASQGFFF---RN----F----------------DALASRFRVIAIDQL-GWGGSSR-PD-FTCKSTE 156 (402)
T ss_pred CCCCEEEEECCCCcchhHHH---HH----H----------------HHHHhCCEEEEECCC-CCCCCCC-CC-cccccHH
Confidence 46699999999876554321 11 0 012234789999955 8888832 11 1111122
Q ss_pred ceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 183 ~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
++.+.+.+.+.+|.+ ++...+++|.|+|+||..+-.+|.+- +-.++++++.++..
T Consensus 157 ~~~~~~~~~i~~~~~---~l~~~~~~lvGhS~GG~la~~~a~~~------------p~~v~~lvl~~p~~ 211 (402)
T PLN02894 157 ETEAWFIDSFEEWRK---AKNLSNFILLGHSFGGYVAAKYALKH------------PEHVQHLILVGPAG 211 (402)
T ss_pred HHHHHHHHHHHHHHH---HcCCCCeEEEEECHHHHHHHHHHHhC------------chhhcEEEEECCcc
Confidence 232233344444443 23445899999999998766666421 12478888887653
No 23
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=97.74 E-value=4.5e-06 Score=77.48 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=64.9
Q ss_pred EEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCcceeee
Q psy6387 108 LVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVN 187 (483)
Q Consensus 108 ~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d 187 (483)
||.++|+++.+..+--+.+ . + .+..+++.+|.| |.|.|-.... ....+-++.+
T Consensus 1 vv~~hG~~~~~~~~~~~~~----------~------l-------~~~~~v~~~d~~-G~G~s~~~~~-~~~~~~~~~~-- 53 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAE----------A------L-------ARGYRVIAFDLP-GHGRSDPPPD-YSPYSIEDYA-- 53 (228)
T ss_dssp EEEE-STTTTGGGGHHHHH----------H------H-------HTTSEEEEEECT-TSTTSSSHSS-GSGGSHHHHH--
T ss_pred eEEECCCCCCHHHHHHHHH----------H------H-------hCCCEEEEEecC-Cccccccccc-cCCcchhhhh--
Confidence 6889999887755422221 0 2 146789999966 9999853321 1111223333
Q ss_pred eeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcc
Q psy6387 188 LYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPL 255 (483)
Q Consensus 188 ~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~ 255 (483)
+.+.++++. +...+++|.|+|+||..+-.++.+. +-.++|+++-++.....
T Consensus 54 --~~l~~~l~~---~~~~~~~lvG~S~Gg~~a~~~a~~~------------p~~v~~~vl~~~~~~~~ 104 (228)
T PF12697_consen 54 --EDLAELLDA---LGIKKVILVGHSMGGMIALRLAARY------------PDRVKGLVLLSPPPPLP 104 (228)
T ss_dssp --HHHHHHHHH---TTTSSEEEEEETHHHHHHHHHHHHS------------GGGEEEEEEESESSSHH
T ss_pred --hhhhhcccc---ccccccccccccccccccccccccc------------ccccccceeeccccccc
Confidence 344555543 3337899999999999888877431 12689999988877543
No 24
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=97.73 E-value=6.5e-05 Score=70.83 Aligned_cols=58 Identities=21% Similarity=0.109 Sum_probs=45.2
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
..+||+.+|..|.+++....+.+.+. .. +-++.++.++||+++.++|+..
T Consensus 188 ~~Pvlii~g~~D~~~~~~~~~~~~~~-----------------------------~~-~~~~~~~~~~gH~~~~e~p~~~ 237 (245)
T TIGR01738 188 SVPFLRLYGYLDGLVPAKVVPYLDKL-----------------------------AP-HSELYIFAKAAHAPFLSHAEAF 237 (245)
T ss_pred CCCEEEEeecCCcccCHHHHHHHHHh-----------------------------CC-CCeEEEeCCCCCCccccCHHHH
Confidence 68999999999999986544332222 12 3455678899999999999999
Q ss_pred hhhhhhcc
Q psy6387 472 FDLITRFT 479 (483)
Q Consensus 472 ~~mi~~fl 479 (483)
.+.|.+|+
T Consensus 238 ~~~i~~fi 245 (245)
T TIGR01738 238 CALLVAFK 245 (245)
T ss_pred HHHHHhhC
Confidence 99999986
No 25
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=97.72 E-value=1.8e-05 Score=82.81 Aligned_cols=128 Identities=19% Similarity=0.110 Sum_probs=77.7
Q ss_pred CceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCcc
Q psy6387 86 HSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVG 165 (483)
Q Consensus 86 ~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvG 165 (483)
.+..+|++.+.... . +.+|+||+++|.++.+... .+..+. +. .+-.+++-+|.| |
T Consensus 119 ~~~~l~~~~~~p~~-~-~~~~~Vl~lHG~~~~~~~~---~~~a~~-------------L~------~~Gy~V~~~D~r-G 173 (395)
T PLN02652 119 RRNALFCRSWAPAA-G-EMRGILIIIHGLNEHSGRY---LHFAKQ-------------LT------SCGFGVYAMDWI-G 173 (395)
T ss_pred CCCEEEEEEecCCC-C-CCceEEEEECCchHHHHHH---HHHHHH-------------HH------HCCCEEEEeCCC-C
Confidence 34678888876643 2 4568999999987654432 111111 11 124688999955 8
Q ss_pred CceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCccccccccee
Q psy6387 166 TGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGI 245 (483)
Q Consensus 166 tGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi 245 (483)
-|.|-.. .++..+.+..++|+..+++..-..+| ..+++|.|+|.||..+-.++.+ + +..-.++|+
T Consensus 174 hG~S~~~--~~~~~~~~~~~~Dl~~~l~~l~~~~~---~~~i~lvGhSmGG~ial~~a~~-----p-----~~~~~v~gl 238 (395)
T PLN02652 174 HGGSDGL--HGYVPSLDYVVEDTEAFLEKIRSENP---GVPCFLFGHSTGGAVVLKAASY-----P-----SIEDKLEGI 238 (395)
T ss_pred CCCCCCC--CCCCcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHHHHHHHHHHhc-----c-----CcccccceE
Confidence 8988332 23333444556666556555444333 4589999999999876654421 1 011248899
Q ss_pred eecCCCCC
Q psy6387 246 AIGNGLCD 253 (483)
Q Consensus 246 ~IGNg~~d 253 (483)
++.+++++
T Consensus 239 VL~sP~l~ 246 (395)
T PLN02652 239 VLTSPALR 246 (395)
T ss_pred EEECcccc
Confidence 99887753
No 26
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=97.72 E-value=4.1e-05 Score=79.14 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=48.2
Q ss_pred ceeEEEEcCeeeEEEecceee-ccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTV-NFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~-~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~ 470 (483)
.++|||..|+.|.++|..+.. .+++.|. +... +.++++|.+|||+++.++|++
T Consensus 292 ~~PtLii~G~~D~~~p~~~~~~~~~~~l~-------------------------~~ip-~~~l~~i~~aGH~~~~E~Pe~ 345 (360)
T PLN02679 292 SLPILVLWGDQDPFTPLDGPVGKYFSSLP-------------------------SQLP-NVTLYVLEGVGHCPHDDRPDL 345 (360)
T ss_pred CCCEEEEEeCCCCCcCchhhHHHHHHhhh-------------------------ccCC-ceEEEEcCCCCCCccccCHHH
Confidence 689999999999998865321 2222221 1123 556778999999999999999
Q ss_pred hhhhhhhcccC
Q psy6387 471 AFDLITRFTHG 481 (483)
Q Consensus 471 a~~mi~~fl~~ 481 (483)
..+.|.+|+..
T Consensus 346 ~~~~I~~FL~~ 356 (360)
T PLN02679 346 VHEKLLPWLAQ 356 (360)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 27
>PRK10349 carboxylesterase BioH; Provisional
Probab=97.64 E-value=4.9e-05 Score=73.98 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=46.3
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.++|||..|..|.++|....+...+. .. +..++++.++||+++.++|+..
T Consensus 196 ~~P~lii~G~~D~~~~~~~~~~~~~~-----------------------------i~-~~~~~~i~~~gH~~~~e~p~~f 245 (256)
T PRK10349 196 SMPFLRLYGYLDGLVPRKVVPMLDKL-----------------------------WP-HSESYIFAKAAHAPFISHPAEF 245 (256)
T ss_pred CCCeEEEecCCCccCCHHHHHHHHHh-----------------------------CC-CCeEEEeCCCCCCccccCHHHH
Confidence 78999999999999876533222111 23 5677889999999999999999
Q ss_pred hhhhhhccc
Q psy6387 472 FDLITRFTH 480 (483)
Q Consensus 472 ~~mi~~fl~ 480 (483)
.+.+.+|-.
T Consensus 246 ~~~l~~~~~ 254 (256)
T PRK10349 246 CHLLVALKQ 254 (256)
T ss_pred HHHHHHHhc
Confidence 999998853
No 28
>PLN02578 hydrolase
Probab=97.54 E-value=2.5e-05 Score=80.40 Aligned_cols=76 Identities=18% Similarity=0.057 Sum_probs=48.0
Q ss_pred ccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCC
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPE 232 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~ 232 (483)
+..+++-+|.| |-|.|-.. ...| +.+..++++.+++++ ....+++|.|+|+||..+..+|.+--
T Consensus 111 ~~~~v~~~D~~-G~G~S~~~-~~~~--~~~~~a~~l~~~i~~-------~~~~~~~lvG~S~Gg~ia~~~A~~~p----- 174 (354)
T PLN02578 111 KKYKVYALDLL-GFGWSDKA-LIEY--DAMVWRDQVADFVKE-------VVKEPAVLVGNSLGGFTALSTAVGYP----- 174 (354)
T ss_pred cCCEEEEECCC-CCCCCCCc-cccc--CHHHHHHHHHHHHHH-------hccCCeEEEEECHHHHHHHHHHHhCh-----
Confidence 45789999977 88887322 1112 223334444444332 33578999999999987777665321
Q ss_pred CCCcccccccceeeecCCC
Q psy6387 233 QGSEKDKINLKGIAIGNGL 251 (483)
Q Consensus 233 ~~~~~~~inLkGi~IGNg~ 251 (483)
-.++++++.|+.
T Consensus 175 -------~~v~~lvLv~~~ 186 (354)
T PLN02578 175 -------ELVAGVALLNSA 186 (354)
T ss_pred -------HhcceEEEECCC
Confidence 257888887764
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=97.53 E-value=5e-05 Score=71.53 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=61.3
Q ss_pred CcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCcce
Q psy6387 105 APVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHV 184 (483)
Q Consensus 105 ~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~ 184 (483)
.|+||.++|.+|.+...- .+-+. |. +..+++-+|.| |.|.|-.... ....+.++.
T Consensus 1 ~~~vv~~hG~~~~~~~~~---~~~~~-------------L~-------~~~~v~~~d~~-g~G~s~~~~~-~~~~~~~~~ 55 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQ---ALIEL-------------LG-------PHFRCLAIDLP-GHGSSQSPDE-IERYDFEEA 55 (251)
T ss_pred CCEEEEEcCCCCchhhHH---HHHHH-------------hc-------ccCeEEEEcCC-CCCCCCCCCc-cChhhHHHH
Confidence 378999999877665431 11111 21 34788999955 8888832111 011122222
Q ss_pred eeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 185 GVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 185 a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
+++ .+..+.+ ++..++++|.|+|+||..+..+|.+.- -.++++++-++..
T Consensus 56 ~~~---~~~~~~~---~~~~~~~~l~G~S~Gg~ia~~~a~~~~------------~~v~~lil~~~~~ 105 (251)
T TIGR03695 56 AQD---ILATLLD---QLGIEPFFLVGYSMGGRIALYYALQYP------------ERVQGLILESGSP 105 (251)
T ss_pred HHH---HHHHHHH---HcCCCeEEEEEeccHHHHHHHHHHhCc------------hheeeeEEecCCC
Confidence 222 1333333 234578999999999998888776421 2478888877643
No 30
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=97.42 E-value=0.00012 Score=78.44 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=70.4
Q ss_pred eeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCc
Q psy6387 88 SALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTG 167 (483)
Q Consensus 88 ~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtG 167 (483)
..||++.......+ ..|.||+++|.+|.+.+..-. .=|. +.. .+.+...++-+|.| |-|
T Consensus 186 ~~l~~~~~gp~~~~--~k~~VVLlHG~~~s~~~W~~~--~~~~-------------L~~---~~~~~yrVia~Dl~-G~G 244 (481)
T PLN03087 186 ESLFVHVQQPKDNK--AKEDVLFIHGFISSSAFWTET--LFPN-------------FSD---AAKSTYRLFAVDLL-GFG 244 (481)
T ss_pred eEEEEEEecCCCCC--CCCeEEEECCCCccHHHHHHH--HHHH-------------HHH---HhhCCCEEEEECCC-CCC
Confidence 57888877654322 347789999998877654210 0000 111 13356789999966 888
Q ss_pred eeeeeecccccccCcceeeeeeehh-HHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceee
Q psy6387 168 FSFVEHNDLYSRNESHVGVNLYIGL-VQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIA 246 (483)
Q Consensus 168 fSy~~~~~~~~~~~~~~a~d~~~fL-~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~ 246 (483)
.|-...+..| +.++.+ +.+ +.+.+ ++...++++.|+|.||..+-.+|.+--+ .+++++
T Consensus 245 ~S~~p~~~~y--tl~~~a----~~l~~~ll~---~lg~~k~~LVGhSmGG~iAl~~A~~~Pe------------~V~~LV 303 (481)
T PLN03087 245 RSPKPADSLY--TLREHL----EMIERSVLE---RYKVKSFHIVAHSLGCILALALAVKHPG------------AVKSLT 303 (481)
T ss_pred CCcCCCCCcC--CHHHHH----HHHHHHHHH---HcCCCCEEEEEECHHHHHHHHHHHhChH------------hccEEE
Confidence 8732111111 222222 233 23433 3455789999999999988777653211 367888
Q ss_pred ecCC
Q psy6387 247 IGNG 250 (483)
Q Consensus 247 IGNg 250 (483)
+.++
T Consensus 304 Li~~ 307 (481)
T PLN03087 304 LLAP 307 (481)
T ss_pred EECC
Confidence 8775
No 31
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=97.40 E-value=9e-05 Score=77.29 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=75.7
Q ss_pred CCccceecceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCccccc
Q psy6387 65 PGLNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYL 144 (483)
Q Consensus 65 ~~~~~~~ysGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l 144 (483)
|-.+.+.-+|+. .. ..+-.+||.- . .+ .+.|.||.++|.|+.+..+--+.+ . |
T Consensus 98 ~~~~~~~~~~~~----~~--~~~~~~~y~~---~-G~-~~~~~ivllHG~~~~~~~w~~~~~----------~------L 150 (383)
T PLN03084 98 PIFGLKMGAQSQ----AS--SDLFRWFCVE---S-GS-NNNPPVLLIHGFPSQAYSYRKVLP----------V------L 150 (383)
T ss_pred ccccccccceeE----Ec--CCceEEEEEe---c-CC-CCCCeEEEECCCCCCHHHHHHHHH----------H------H
Confidence 445667667777 32 2234444332 2 23 456899999999876654311111 0 2
Q ss_pred ccccccccccceEEEeeCCccCceeeeeecc-cccccCcceeeeeeehhHHHHHHhhhcccCceEEecccccccccccee
Q psy6387 145 DTRKTHWTKNHNVIYIDNPVGTGFSFVEHND-LYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALA 223 (483)
Q Consensus 145 ~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~-~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA 223 (483)
.+..+++-+|.| |.|+|-..... +...+.++.+++ |..|++. +...+++|.|+|+||..+-.+|
T Consensus 151 -------~~~~~Via~Dlp-G~G~S~~p~~~~~~~ys~~~~a~~----l~~~i~~---l~~~~~~LvG~s~GG~ia~~~a 215 (383)
T PLN03084 151 -------SKNYHAIAFDWL-GFGFSDKPQPGYGFNYTLDEYVSS----LESLIDE---LKSDKVSLVVQGYFSPPVVKYA 215 (383)
T ss_pred -------hcCCEEEEECCC-CCCCCCCCcccccccCCHHHHHHH----HHHHHHH---hCCCCceEEEECHHHHHHHHHH
Confidence 234789999955 99998432210 011123334444 4444442 3446899999999996554444
Q ss_pred EEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 224 YTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 224 ~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
.+ .+ -.++++++-|+..
T Consensus 216 ~~----~P--------~~v~~lILi~~~~ 232 (383)
T PLN03084 216 SA----HP--------DKIKKLILLNPPL 232 (383)
T ss_pred Hh----Ch--------HhhcEEEEECCCC
Confidence 32 11 2488898888754
No 32
>PRK10749 lysophospholipase L2; Provisional
Probab=97.35 E-value=0.00025 Score=72.32 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=48.0
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCc---
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQS--- 468 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP--- 468 (483)
.++|||.+|..|.+|+..+++.+.+.++=. |. ... +.+++++.||||++..++|
T Consensus 259 ~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~--------------------~~--~~~-~~~l~~~~gagH~~~~E~~~~r 315 (330)
T PRK10749 259 TTPLLLLQAEEERVVDNRMHDRFCEARTAA--------------------GH--PCE-GGKPLVIKGAYHEILFEKDAMR 315 (330)
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHHHhhc--------------------CC--CCC-CceEEEeCCCcchhhhCCcHHH
Confidence 689999999999999998877766554310 10 012 3456888999999999887
Q ss_pred cchhhhhhhcccC
Q psy6387 469 EWAFDLITRFTHG 481 (483)
Q Consensus 469 ~~a~~mi~~fl~~ 481 (483)
+.+++-|..|+..
T Consensus 316 ~~v~~~i~~fl~~ 328 (330)
T PRK10749 316 SVALNAIVDFFNR 328 (330)
T ss_pred HHHHHHHHHHHhh
Confidence 4455666677754
No 33
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=97.33 E-value=0.00058 Score=70.07 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=44.8
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.++||+..|+.|.+|+....+ . -+. +..+.++.++||+...++|+..
T Consensus 314 ~~Pvlii~g~~D~~vp~~~~~----~----------------------------l~~-~~~~~~~~~~gH~~~~e~p~~~ 360 (371)
T PRK14875 314 AIPVLVIWGEQDRIIPAAHAQ----G----------------------------LPD-GVAVHVLPGAGHMPQMEAAADV 360 (371)
T ss_pred CCCEEEEEECCCCccCHHHHh----h----------------------------ccC-CCeEEEeCCCCCChhhhCHHHH
Confidence 689999999999988753211 0 012 4556678899999999999999
Q ss_pred hhhhhhcccC
Q psy6387 472 FDLITRFTHG 481 (483)
Q Consensus 472 ~~mi~~fl~~ 481 (483)
.+.|.+|+.+
T Consensus 361 ~~~i~~fl~~ 370 (371)
T PRK14875 361 NRLLAEFLGK 370 (371)
T ss_pred HHHHHHHhcc
Confidence 9999999864
No 34
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.31 E-value=0.00013 Score=74.85 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=83.7
Q ss_pred eeEEEeecc--cccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccC
Q psy6387 89 ALFFWFFPA--QEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGT 166 (483)
Q Consensus 89 ~lFfwf~ea--~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGt 166 (483)
.-.||+.++ +.+| ++||+||+++|| |.+.+.=|+.+.. -.+-+..-+...+|.+|-..-.
T Consensus 105 ~~s~Wlvk~P~~~~p-k~DpVlIYlHGG-------GY~l~~~p~qi~~----------L~~i~~~l~~~SILvLDYsLt~ 166 (374)
T PF10340_consen 105 SQSYWLVKAPNRFKP-KSDPVLIYLHGG-------GYFLGTTPSQIEF----------LLNIYKLLPEVSILVLDYSLTS 166 (374)
T ss_pred cceEEEEeCCcccCC-CCCcEEEEEcCC-------eeEecCCHHHHHH----------HHHHHHHcCCCeEEEEeccccc
Confidence 357999986 3467 889999999999 8888888887532 1122222224499999954432
Q ss_pred ceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceee
Q psy6387 167 GFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIA 246 (483)
Q Consensus 167 GfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~ 246 (483)
| ...+..|+ .++++.+..+=.+--+-...++.+.|+|=||+.+-++..++.+.++ ...+ |+++
T Consensus 167 --~-~~~~~~yP-------tQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~------~~~P-k~~i 229 (374)
T PF10340_consen 167 --S-DEHGHKYP-------TQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKKPNK------LPYP-KSAI 229 (374)
T ss_pred --c-ccCCCcCc-------hHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhhcCC------CCCC-ceeE
Confidence 0 00111222 2233333222221112335679999999999999999888766443 1122 6899
Q ss_pred ecCCCCCcch
Q psy6387 247 IGNGLCDPLN 256 (483)
Q Consensus 247 IGNg~~dp~~ 256 (483)
+-.||+++..
T Consensus 230 LISPWv~l~~ 239 (374)
T PF10340_consen 230 LISPWVNLVP 239 (374)
T ss_pred EECCCcCCcC
Confidence 9999999974
No 35
>KOG4409|consensus
Probab=97.29 E-value=0.00019 Score=72.19 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=56.0
Q ss_pred cccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecC
Q psy6387 150 HWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLN 229 (483)
Q Consensus 150 sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~ 229 (483)
+..+..||-.||.| |-|+|- .. .+..+.+.+-+.+.+-+.+|... ..-.+.+|.|+|+||......|.+--+
T Consensus 112 ~La~~~~vyaiDll-G~G~SS-RP--~F~~d~~~~e~~fvesiE~WR~~---~~L~KmilvGHSfGGYLaa~YAlKyPe- 183 (365)
T KOG4409|consen 112 DLAKIRNVYAIDLL-GFGRSS-RP--KFSIDPTTAEKEFVESIEQWRKK---MGLEKMILVGHSFGGYLAAKYALKYPE- 183 (365)
T ss_pred hhhhcCceEEeccc-CCCCCC-CC--CCCCCcccchHHHHHHHHHHHHH---cCCcceeEeeccchHHHHHHHHHhChH-
Confidence 34458899999955 999993 22 24444444444566666777763 444589999999999655544432211
Q ss_pred CCCCCCcccccccceeeecCCCCCcc
Q psy6387 230 NPEQGSEKDKINLKGIAIGNGLCDPL 255 (483)
Q Consensus 230 n~~~~~~~~~inLkGi~IGNg~~dp~ 255 (483)
.++-+++-+||--|.
T Consensus 184 -----------rV~kLiLvsP~Gf~~ 198 (365)
T KOG4409|consen 184 -----------RVEKLILVSPWGFPE 198 (365)
T ss_pred -----------hhceEEEeccccccc
Confidence 267788888876554
No 36
>KOG4178|consensus
Probab=97.25 E-value=0.00019 Score=71.80 Aligned_cols=60 Identities=28% Similarity=0.461 Sum_probs=49.5
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchh-hHHhhhcCCcccccCCccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNF-YEVLVRNAGHMVPKDQSEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nl-tfv~V~~AGHmvP~DqP~~ 470 (483)
.++|+++.|++|.+++++. ..++|.|... ++ .-+++.++||.|++|+|++
T Consensus 258 ~iPv~fi~G~~D~v~~~p~----------------------------~~~~~rk~vp-~l~~~vv~~~~gH~vqqe~p~~ 308 (322)
T KOG4178|consen 258 TIPVLFIWGDLDPVLPYPI----------------------------FGELYRKDVP-RLTERVVIEGIGHFVQQEKPQE 308 (322)
T ss_pred ccceEEEEecCcccccchh----------------------------HHHHHHHhhc-cccceEEecCCcccccccCHHH
Confidence 6899999999999998871 2345556666 66 4577889999999999999
Q ss_pred hhhhhhhccc
Q psy6387 471 AFDLITRFTH 480 (483)
Q Consensus 471 a~~mi~~fl~ 480 (483)
..++|..|++
T Consensus 309 v~~~i~~f~~ 318 (322)
T KOG4178|consen 309 VNQAILGFIN 318 (322)
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 37
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.98 E-value=0.00033 Score=85.59 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=46.0
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhh-----cccchhhHHhhhcCCcccccC
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVK-----NVNKNFYEVLVRNAGHMVPKD 466 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k-----~~~~nltfv~V~~AGHmvP~D 466 (483)
..++|+..|+.|.+++ ...+++.+.+. +..+ ... ...+++|.+|||+++.+
T Consensus 1568 ~~PtLlI~Ge~D~~~~-~~a~~~~~~i~----------------------~a~~~~~~~~~~-~a~lvvI~~aGH~~~lE 1623 (1655)
T PLN02980 1568 DTPLLLVVGEKDVKFK-QIAQKMYREIG----------------------KSKESGNDKGKE-IIEIVEIPNCGHAVHLE 1623 (1655)
T ss_pred CCCEEEEEECCCCccH-HHHHHHHHHcc----------------------cccccccccccc-ceEEEEECCCCCchHHH
Confidence 6899999999998774 21222222221 0000 011 34678899999999999
Q ss_pred CccchhhhhhhcccC
Q psy6387 467 QSEWAFDLITRFTHG 481 (483)
Q Consensus 467 qP~~a~~mi~~fl~~ 481 (483)
+|+...+.|.+|+.+
T Consensus 1624 ~Pe~f~~~I~~FL~~ 1638 (1655)
T PLN02980 1624 NPLPVIRALRKFLTR 1638 (1655)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999864
No 38
>PLN02511 hydrolase
Probab=96.97 E-value=0.0029 Score=66.20 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=62.7
Q ss_pred ceeeEEEeecc--cccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCc
Q psy6387 87 SSALFFWFFPA--QEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPV 164 (483)
Q Consensus 87 ~~~lFfwf~ea--~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPv 164 (483)
+..+..+.+.. ...+ .++|+||.|.|..|+|... +... +. .....+..+++-+|. .
T Consensus 81 G~~~~ldw~~~~~~~~~-~~~p~vvllHG~~g~s~~~--------y~~~----------~~--~~~~~~g~~vv~~d~-r 138 (388)
T PLN02511 81 GGAVALDWVSGDDRALP-ADAPVLILLPGLTGGSDDS--------YVRH----------ML--LRARSKGWRVVVFNS-R 138 (388)
T ss_pred CCEEEEEecCcccccCC-CCCCEEEEECCCCCCCCCH--------HHHH----------HH--HHHHHCCCEEEEEec-C
Confidence 34455533332 2234 6789999999999987521 1000 00 000124467899995 4
Q ss_pred cCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEecccccccccccee
Q psy6387 165 GTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALA 223 (483)
Q Consensus 165 GtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA 223 (483)
|-|-|-......+ ....++|+.++++..-..+| ..++++.|.|.||..+-.++
T Consensus 139 G~G~s~~~~~~~~---~~~~~~Dl~~~i~~l~~~~~---~~~~~lvG~SlGg~i~~~yl 191 (388)
T PLN02511 139 GCADSPVTTPQFY---SASFTGDLRQVVDHVAGRYP---SANLYAAGWSLGANILVNYL 191 (388)
T ss_pred CCCCCCCCCcCEE---cCCchHHHHHHHHHHHHHCC---CCCEEEEEechhHHHHHHHH
Confidence 8888743222112 23445566666655444444 56899999999998765544
No 39
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=96.36 E-value=0.002 Score=64.80 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=72.6
Q ss_pred ceeEEeeccccCCCceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCccccccccccccc
Q psy6387 73 SGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWT 152 (483)
Q Consensus 73 sGyl~~~~~v~~~~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~ 152 (483)
.+|+ ++.+ +..|+|+-. ..+ + .|-||.++||||.++.. +.-. . +. .
T Consensus 6 ~~~~----~~~~--~~~l~y~~~---g~~-~-~~~lvllHG~~~~~~~~----~~~~-------~------~~------~ 51 (306)
T TIGR01249 6 SGYL----NVSD--NHQLYYEQS---GNP-D-GKPVVFLHGGPGSGTDP----GCRR-------F------FD------P 51 (306)
T ss_pred CCeE----EcCC--CcEEEEEEC---cCC-C-CCEEEEECCCCCCCCCH----HHHh-------c------cC------c
Confidence 4678 6643 567877553 223 3 34468899999876531 0000 0 11 1
Q ss_pred ccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCC
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPE 232 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~ 232 (483)
+..+++-+|.| |.|.|..... .+..+.++.++ .+..+.+. +...++++.|+|+||..+-.++.+--
T Consensus 52 ~~~~vi~~D~~-G~G~S~~~~~-~~~~~~~~~~~----dl~~l~~~---l~~~~~~lvG~S~GG~ia~~~a~~~p----- 117 (306)
T TIGR01249 52 ETYRIVLFDQR-GCGKSTPHAC-LEENTTWDLVA----DIEKLREK---LGIKNWLVFGGSWGSTLALAYAQTHP----- 117 (306)
T ss_pred cCCEEEEECCC-CCCCCCCCCC-cccCCHHHHHH----HHHHHHHH---cCCCCEEEEEECHHHHHHHHHHHHCh-----
Confidence 35789999965 9999853211 11112223333 33333332 34467999999999987777664321
Q ss_pred CCCcccccccceeeecCCCCC
Q psy6387 233 QGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 233 ~~~~~~~inLkGi~IGNg~~d 253 (483)
-.++++++-+..+.
T Consensus 118 -------~~v~~lvl~~~~~~ 131 (306)
T TIGR01249 118 -------EVVTGLVLRGIFLL 131 (306)
T ss_pred -------HhhhhheeeccccC
Confidence 24678777776654
No 40
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=96.36 E-value=0.0013 Score=67.14 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=58.0
Q ss_pred ccceEEEeeCCccCceeeeeec-ccccccCcceeeeeeehhHHHHHHh--------h--------hcc-cCceEEecccc
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHN-DLYSRNESHVGVNLYIGLVQFFKIF--------K--------EYQ-SNDFYVTGESY 214 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~-~~~~~~~~~~a~d~~~fL~~F~~~f--------P--------e~~-~~~~yi~GESY 214 (483)
+-..|+-+|. .|.|.|-.... .++..+-++.++|+..+++..-+.. + ++. +.|++|.|+|.
T Consensus 73 ~G~~V~~~D~-rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSm 151 (332)
T TIGR01607 73 NGYSVYGLDL-QGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSM 151 (332)
T ss_pred CCCcEEEecc-cccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccC
Confidence 3578999995 69999864322 2233345566677776666543210 0 233 67999999999
Q ss_pred ccccccceeEEEecCCCCCCCcccccccceeeecCCCCC
Q psy6387 215 AGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 215 aG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~d 253 (483)
||-.+-.++...-+.. .-..+..++|+++-.|.+.
T Consensus 152 Gg~i~~~~~~~~~~~~----~~~~~~~i~g~i~~s~~~~ 186 (332)
T TIGR01607 152 GGNIALRLLELLGKSN----ENNDKLNIKGCISLSGMIS 186 (332)
T ss_pred ccHHHHHHHHHhcccc----ccccccccceEEEeccceE
Confidence 9987766554332210 0011246899987777663
No 41
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.23 E-value=0.0036 Score=69.54 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=70.9
Q ss_pred cccCCCceeeEEEeecccc-cCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEE
Q psy6387 81 TVDKNHSSALFFWFFPAQE-KNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIY 159 (483)
Q Consensus 81 ~v~~~~~~~lFfwf~ea~~-~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLy 159 (483)
++....+..+..|++.-.+ +|.++-|+|+++.||| +++.| +....... .=+.+-+.||+
T Consensus 369 ~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP--~~~~~-------~~~~~~~q-----------~~~~~G~~V~~ 428 (620)
T COG1506 369 TYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGP--SAQVG-------YSFNPEIQ-----------VLASAGYAVLA 428 (620)
T ss_pred EEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCC--ccccc-------cccchhhH-----------HHhcCCeEEEE
Confidence 4444446688888877653 3313359999999999 44443 11111111 11345678899
Q ss_pred eeCCccC-ceee--eeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEecccccccc
Q psy6387 160 IDNPVGT-GFSF--VEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKY 218 (483)
Q Consensus 160 iDqPvGt-GfSy--~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~y 218 (483)
++ |.|+ ||+. .... ...--....+|+.+++. |+...|..-...+.|+|.||||..
T Consensus 429 ~n-~RGS~GyG~~F~~~~--~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGym 486 (620)
T COG1506 429 PN-YRGSTGYGREFADAI--RGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYM 486 (620)
T ss_pred eC-CCCCCccHHHHHHhh--hhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHH
Confidence 98 6664 4432 2211 11111234567778888 999999888888999999999953
No 42
>PRK10985 putative hydrolase; Provisional
Probab=96.05 E-value=0.015 Score=59.09 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=32.7
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCC
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQ 467 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~Dq 467 (483)
.+++|+.+|+.|.+++....+.. . +... +..++++.++||+.+.+.
T Consensus 255 ~~P~lii~g~~D~~~~~~~~~~~-~----------------------------~~~~-~~~~~~~~~~GH~~~~~g 300 (324)
T PRK10985 255 RKPTLIIHAKDDPFMTHEVIPKP-E----------------------------SLPP-NVEYQLTEHGGHVGFVGG 300 (324)
T ss_pred CCCEEEEecCCCCCCChhhChHH-H----------------------------HhCC-CeEEEECCCCCceeeCCC
Confidence 68999999999999875433221 1 1123 566778889999998864
No 43
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=95.70 E-value=0.0029 Score=59.32 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=51.9
Q ss_pred eEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCC
Q psy6387 156 NVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGS 235 (483)
Q Consensus 156 nlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~ 235 (483)
.|+-+| +.|.|+|-.. ......+-..+++.+.+..+.+..+ ..++++.|.|+||..+-.+|..-
T Consensus 2 ~vi~~d-~rG~g~S~~~---~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~vG~S~Gg~~~~~~a~~~--------- 65 (230)
T PF00561_consen 2 DVILFD-LRGFGYSSPH---WDPDFPDYTTDDLAADLEALREALG---IKKINLVGHSMGGMLALEYAAQY--------- 65 (230)
T ss_dssp EEEEEE-CTTSTTSSSC---CGSGSCTHCHHHHHHHHHHHHHHHT---TSSEEEEEETHHHHHHHHHHHHS---------
T ss_pred EEEEEe-CCCCCCCCCC---ccCCcccccHHHHHHHHHHHHHHhC---CCCeEEEEECCChHHHHHHHHHC---------
Confidence 577889 5699999530 0112234455666677777777544 45599999999998776666321
Q ss_pred cccccccceeeecCCCC
Q psy6387 236 EKDKINLKGIAIGNGLC 252 (483)
Q Consensus 236 ~~~~inLkGi~IGNg~~ 252 (483)
+-.++++++-++..
T Consensus 66 ---p~~v~~lvl~~~~~ 79 (230)
T PF00561_consen 66 ---PERVKKLVLISPPP 79 (230)
T ss_dssp ---GGGEEEEEEESESS
T ss_pred ---chhhcCcEEEeeec
Confidence 11688888877764
No 44
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=95.67 E-value=0.0092 Score=62.99 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=53.8
Q ss_pred cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCC
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQ 233 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~ 233 (483)
-.++|-+|.| |.|.|-... . +. + ...+...+.+++...|+....++.|.|.|+||.+++.+|..-.
T Consensus 222 Gy~vl~~D~p-G~G~s~~~~---~--~~-d-~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p------ 287 (414)
T PRK05077 222 GIAMLTIDMP-SVGFSSKWK---L--TQ-D-SSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEP------ 287 (414)
T ss_pred CCEEEEECCC-CCCCCCCCC---c--cc-c-HHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCC------
Confidence 3789999988 999883211 1 11 1 1112245666777667667788999999999999988874311
Q ss_pred CCcccccccceeeecCCCCC
Q psy6387 234 GSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 234 ~~~~~~inLkGi~IGNg~~d 253 (483)
-.++++++.+|.++
T Consensus 288 ------~ri~a~V~~~~~~~ 301 (414)
T PRK05077 288 ------PRLKAVACLGPVVH 301 (414)
T ss_pred ------cCceEEEEECCccc
Confidence 13788888777654
No 45
>PLN02872 triacylglycerol lipase
Probab=94.35 E-value=0.012 Score=61.58 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=44.5
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcc---cccCCc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHM---VPKDQS 468 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHm---vP~DqP 468 (483)
+++|+||.|..|.+++....+++.+.|.= .-....+.++||+ ...+.|
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~-----------------------------~~~l~~l~~~gH~dfi~~~eap 375 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPS-----------------------------KPELLYLENYGHIDFLLSTSAK 375 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCC-----------------------------ccEEEEcCCCCCHHHHhCcchH
Confidence 68999999999999988777777666530 0112345779996 345889
Q ss_pred cchhhhhhhccc
Q psy6387 469 EWAFDLITRFTH 480 (483)
Q Consensus 469 ~~a~~mi~~fl~ 480 (483)
+..++-|.+|+.
T Consensus 376 e~V~~~Il~fL~ 387 (395)
T PLN02872 376 EDVYNHMIQFFR 387 (395)
T ss_pred HHHHHHHHHHHH
Confidence 988888888875
No 46
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=94.34 E-value=0.027 Score=53.85 Aligned_cols=100 Identities=25% Similarity=0.283 Sum_probs=62.1
Q ss_pred CcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCcce
Q psy6387 105 APVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHV 184 (483)
Q Consensus 105 ~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~ 184 (483)
.|.||.+.|.+|.+...- ...|. + +..+++-+| ..|-|.|-... ..+-++.
T Consensus 2 ~p~vvllHG~~~~~~~w~---~~~~~-------------l--------~~~~vi~~D-~~G~G~S~~~~----~~~~~~~ 52 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQ---PVGEA-------------L--------PDYPRLYID-LPGHGGSAAIS----VDGFADV 52 (242)
T ss_pred CCEEEEECCCCCChHHHH---HHHHH-------------c--------CCCCEEEec-CCCCCCCCCcc----ccCHHHH
Confidence 588999999988775542 11111 2 237899999 55999984211 1122333
Q ss_pred eeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCC
Q psy6387 185 GVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGL 251 (483)
Q Consensus 185 a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~ 251 (483)
+++ +.++++ ++...++++.|+|+||..+-.+|.+... --++++++.++.
T Consensus 53 ~~~----l~~~l~---~~~~~~~~lvG~S~Gg~va~~~a~~~~~-----------~~v~~lvl~~~~ 101 (242)
T PRK11126 53 SRL----LSQTLQ---SYNILPYWLVGYSLGGRIAMYYACQGLA-----------GGLCGLIVEGGN 101 (242)
T ss_pred HHH----HHHHHH---HcCCCCeEEEEECHHHHHHHHHHHhCCc-----------ccccEEEEeCCC
Confidence 333 334443 3456789999999999888777764211 017788876654
No 47
>PLN02442 S-formylglutathione hydrolase
Probab=94.15 E-value=0.064 Score=53.53 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=31.0
Q ss_pred hhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcc
Q psy6387 200 KEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPL 255 (483)
Q Consensus 200 Pe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~ 255 (483)
+.+...+++|+|.|+||.-+-.++.+ .+ =.+++++..+|.++|.
T Consensus 138 ~~~~~~~~~i~G~S~GG~~a~~~a~~----~p--------~~~~~~~~~~~~~~~~ 181 (283)
T PLN02442 138 DQLDTSRASIFGHSMGGHGALTIYLK----NP--------DKYKSVSAFAPIANPI 181 (283)
T ss_pred HhcCCCceEEEEEChhHHHHHHHHHh----Cc--------hhEEEEEEECCccCcc
Confidence 44556679999999999766555542 11 1368888899988764
No 48
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=94.02 E-value=0.048 Score=54.06 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=29.7
Q ss_pred cccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcc
Q psy6387 202 YQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPL 255 (483)
Q Consensus 202 ~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~ 255 (483)
....+++|+|.|.||..+-.++.+- + -.+++++..+|+.++.
T Consensus 135 ~~~~~~~~~G~S~GG~~a~~~a~~~----p--------~~~~~~~~~~~~~~~~ 176 (275)
T TIGR02821 135 LDGERQGITGHSMGGHGALVIALKN----P--------DRFKSVSAFAPIVAPS 176 (275)
T ss_pred CCCCceEEEEEChhHHHHHHHHHhC----c--------ccceEEEEECCccCcc
Confidence 3456799999999998666665431 1 1367888888887763
No 49
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=93.62 E-value=0.055 Score=53.24 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=69.4
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccC
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGT 166 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGt 166 (483)
+..+.||..+. . ...|.||+++|-++.+..+..+.+ . | .+..+++-+|. .|-
T Consensus 11 ~~~~~~~~~~~--~--~~~~plvllHG~~~~~~~w~~~~~----------~------L-------~~~~~vi~~Dl-~G~ 62 (276)
T TIGR02240 11 GQSIRTAVRPG--K--EGLTPLLIFNGIGANLELVFPFIE----------A------L-------DPDLEVIAFDV-PGV 62 (276)
T ss_pred CcEEEEEEecC--C--CCCCcEEEEeCCCcchHHHHHHHH----------H------h-------ccCceEEEECC-CCC
Confidence 45688877542 1 234667899986555444311111 0 2 24579999995 499
Q ss_pred ceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceee
Q psy6387 167 GFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIA 246 (483)
Q Consensus 167 GfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~ 246 (483)
|.|-. .. ...+-++.+ +.+.+|++. +.-.+++|.|+|+||..+-.+|.+ .+ -.+++++
T Consensus 63 G~S~~-~~--~~~~~~~~~----~~~~~~i~~---l~~~~~~LvG~S~GG~va~~~a~~----~p--------~~v~~lv 120 (276)
T TIGR02240 63 GGSST-PR--HPYRFPGLA----KLAARMLDY---LDYGQVNAIGVSWGGALAQQFAHD----YP--------ERCKKLI 120 (276)
T ss_pred CCCCC-CC--CcCcHHHHH----HHHHHHHHH---hCcCceEEEEECHHHHHHHHHHHH----CH--------HHhhheE
Confidence 99932 11 111222333 344444442 344689999999999877766642 11 2489999
Q ss_pred ecCCCCC
Q psy6387 247 IGNGLCD 253 (483)
Q Consensus 247 IGNg~~d 253 (483)
+.|+...
T Consensus 121 l~~~~~~ 127 (276)
T TIGR02240 121 LAATAAG 127 (276)
T ss_pred EeccCCc
Confidence 9988654
No 50
>PRK07581 hypothetical protein; Validated
Probab=92.73 E-value=0.022 Score=57.94 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=47.1
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhc-CCcccccCCccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRN-AGHMVPKDQSEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~-AGHmvP~DqP~~ 470 (483)
.++||+..|+.|.+++....+.+.+.+ . +..+++|.+ |||+++.+||+.
T Consensus 275 ~~PtLvI~G~~D~~~p~~~~~~l~~~i-----------------------------p-~a~l~~i~~~~GH~~~~~~~~~ 324 (339)
T PRK07581 275 TAKTFVMPISTDLYFPPEDCEAEAALI-----------------------------P-NAELRPIESIWGHLAGFGQNPA 324 (339)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhC-----------------------------C-CCeEEEeCCCCCccccccCcHH
Confidence 689999999999999876544433322 2 345577888 999999999999
Q ss_pred hhhhhhhccc
Q psy6387 471 AFDLITRFTH 480 (483)
Q Consensus 471 a~~mi~~fl~ 480 (483)
...+|++|+.
T Consensus 325 ~~~~~~~~~~ 334 (339)
T PRK07581 325 DIAFIDAALK 334 (339)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 51
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=92.70 E-value=0.043 Score=54.40 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=43.3
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.+++++..|..|.++|..-.+.+.+.+. .-..+++ .+||+.+..+|+..
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~------------------------------~~~~~~l-~~gH~p~ls~P~~~ 259 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWP------------------------------PSQVYEL-ESDHSPFFSTPFLL 259 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCC------------------------------ccEEEEE-CCCCCccccCHHHH
Confidence 5899999999999999875555554432 1123445 49999999999999
Q ss_pred hhhhhhcc
Q psy6387 472 FDLITRFT 479 (483)
Q Consensus 472 ~~mi~~fl 479 (483)
-++|.++.
T Consensus 260 ~~~i~~~a 267 (273)
T PLN02211 260 FGLLIKAA 267 (273)
T ss_pred HHHHHHHH
Confidence 99988764
No 52
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=92.59 E-value=0.017 Score=59.03 Aligned_cols=61 Identities=13% Similarity=0.039 Sum_probs=47.6
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhh-cCCcccccCCccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVR-NAGHMVPKDQSEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~-~AGHmvP~DqP~~ 470 (483)
.+++||..|+.|.+++....+.+.+.+. . +-.+++|. +|||+++.++|++
T Consensus 277 ~~PtLvi~G~~D~~~p~~~~~~~~~~i~----------------------------p-~a~l~~i~~~aGH~~~lE~Pe~ 327 (343)
T PRK08775 277 RVPTVVVAVEGDRLVPLADLVELAEGLG----------------------------P-RGSLRVLRSPYGHDAFLKETDR 327 (343)
T ss_pred CCCeEEEEeCCCEeeCHHHHHHHHHHcC----------------------------C-CCeEEEEeCCccHHHHhcCHHH
Confidence 6899999999999999765544444331 1 33456676 4999999999999
Q ss_pred hhhhhhhcccC
Q psy6387 471 AFDLITRFTHG 481 (483)
Q Consensus 471 a~~mi~~fl~~ 481 (483)
..++|.+|+..
T Consensus 328 ~~~~l~~FL~~ 338 (343)
T PRK08775 328 IDAILTTALRS 338 (343)
T ss_pred HHHHHHHHHHh
Confidence 99999999853
No 53
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=92.00 E-value=0.077 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=16.3
Q ss_pred ccCceEEecccccccccccee
Q psy6387 203 QSNDFYVTGESYAGKYVPALA 223 (483)
Q Consensus 203 ~~~~~yi~GESYaG~yvP~lA 223 (483)
...+++|+|.|.||..+-.++
T Consensus 93 d~~~i~l~G~S~Gg~~a~~~a 113 (212)
T TIGR01840 93 DPNRVYVTGLSAGGGMTAVLG 113 (212)
T ss_pred ChhheEEEEECHHHHHHHHHH
Confidence 345799999999998655555
No 54
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=91.83 E-value=0.15 Score=50.47 Aligned_cols=128 Identities=9% Similarity=0.028 Sum_probs=73.3
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCCCcccc--ccccccccccccccccCCCccccccccccccc-ccceEEEeeCC
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM--FGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWT-KNHNVIYIDNP 163 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl--~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~-~~anlLyiDqP 163 (483)
..++|.|+++.... ...|+||.++|-.+ ... .-.+.... ..+. .-.+++-+|.|
T Consensus 9 ~g~~~~~~~~p~~~--~~~~~VlllHG~g~-~~~~~~~~~~~la--------------------~~La~~Gy~Vl~~Dl~ 65 (266)
T TIGR03101 9 HGFRFCLYHPPVAV--GPRGVVIYLPPFAE-EMNKSRRMVALQA--------------------RAFAAGGFGVLQIDLY 65 (266)
T ss_pred CCcEEEEEecCCCC--CCceEEEEECCCcc-cccchhHHHHHHH--------------------HHHHHCCCEEEEECCC
Confidence 45689999877542 34689999998522 110 00010000 0121 34689999965
Q ss_pred ccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccc
Q psy6387 164 VGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLK 243 (483)
Q Consensus 164 vGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLk 243 (483)
|.|.|-.... . .+.++..+|+..+ .+|++. ....+++|.|+|.||..+-.+|.+. +-.++
T Consensus 66 -G~G~S~g~~~-~--~~~~~~~~Dv~~a-i~~L~~---~~~~~v~LvG~SmGG~vAl~~A~~~------------p~~v~ 125 (266)
T TIGR03101 66 -GCGDSAGDFA-A--ARWDVWKEDVAAA-YRWLIE---QGHPPVTLWGLRLGALLALDAANPL------------AAKCN 125 (266)
T ss_pred -CCCCCCCccc-c--CCHHHHHHHHHHH-HHHHHh---cCCCCEEEEEECHHHHHHHHHHHhC------------ccccc
Confidence 8998843221 1 1112233444332 334433 2246899999999999887766432 12478
Q ss_pred eeeecCCCCCcchh
Q psy6387 244 GIAIGNGLCDPLNM 257 (483)
Q Consensus 244 Gi~IGNg~~dp~~q 257 (483)
++++-++.++....
T Consensus 126 ~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 126 RLVLWQPVVSGKQQ 139 (266)
T ss_pred eEEEeccccchHHH
Confidence 88888888776543
No 55
>PRK06489 hypothetical protein; Provisional
Probab=91.83 E-value=0.14 Score=52.72 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=43.8
Q ss_pred ceeEEEEcCeeeEEEeccee--eccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcC----Cccccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLT--VNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNA----GHMVPK 465 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt--~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~A----GHmvP~ 465 (483)
.++|||..|+.|.++|.... +...+. .. +-.+++|.+| ||++.
T Consensus 292 ~~PvLvI~G~~D~~~p~~~~~~~~la~~-----------------------------ip-~a~l~~i~~a~~~~GH~~~- 340 (360)
T PRK06489 292 KAPVLAINSADDERNPPETGVMEAALKR-----------------------------VK-HGRLVLIPASPETRGHGTT- 340 (360)
T ss_pred CCCEEEEecCCCcccChhhHHHHHHHHh-----------------------------Cc-CCeEEEECCCCCCCCcccc-
Confidence 68999999999988875532 112111 12 4456788886 99986
Q ss_pred CCccchhhhhhhcccC
Q psy6387 466 DQSEWAFDLITRFTHG 481 (483)
Q Consensus 466 DqP~~a~~mi~~fl~~ 481 (483)
++|+...+.|.+|+..
T Consensus 341 e~P~~~~~~i~~FL~~ 356 (360)
T PRK06489 341 GSAKFWKAYLAEFLAQ 356 (360)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 8999999999999853
No 56
>PLN02965 Probable pheophorbidase
Probab=91.77 E-value=0.051 Score=52.85 Aligned_cols=59 Identities=5% Similarity=-0.021 Sum_probs=46.2
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.+++|+..|..|.+++....+.+.+. .. +-+++.+.+|||++..++|+..
T Consensus 193 ~vP~lvi~g~~D~~~~~~~~~~~~~~-----------------------------~~-~a~~~~i~~~GH~~~~e~p~~v 242 (255)
T PLN02965 193 KVPRVYIKTAKDNLFDPVRQDVMVEN-----------------------------WP-PAQTYVLEDSDHSAFFSVPTTL 242 (255)
T ss_pred CCCEEEEEcCCCCCCCHHHHHHHHHh-----------------------------CC-cceEEEecCCCCchhhcCHHHH
Confidence 79999999999999987533332222 22 4455778899999999999999
Q ss_pred hhhhhhccc
Q psy6387 472 FDLITRFTH 480 (483)
Q Consensus 472 ~~mi~~fl~ 480 (483)
.++|.+|+.
T Consensus 243 ~~~l~~~~~ 251 (255)
T PLN02965 243 FQYLLQAVS 251 (255)
T ss_pred HHHHHHHHH
Confidence 999999974
No 57
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=91.61 E-value=0.022 Score=56.00 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=44.6
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.++|||..|+.|.+++....++..+.+ . +.+++++. +|||.+.++|+..
T Consensus 207 ~~P~lii~G~~D~~v~~~~~~~l~~~~-----------------------------~-~~~~~~i~-~gH~~~~e~p~~~ 255 (276)
T TIGR02240 207 QQPTLVLAGDDDPIIPLINMRLLAWRI-----------------------------P-NAELHIID-DGHLFLITRAEAV 255 (276)
T ss_pred CCCEEEEEeCCCCcCCHHHHHHHHHhC-----------------------------C-CCEEEEEc-CCCchhhccHHHH
Confidence 689999999999999876443332222 2 33445554 5999999999999
Q ss_pred hhhhhhcccC
Q psy6387 472 FDLITRFTHG 481 (483)
Q Consensus 472 ~~mi~~fl~~ 481 (483)
.+.|.+|+.+
T Consensus 256 ~~~i~~fl~~ 265 (276)
T TIGR02240 256 APIIMKFLAE 265 (276)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 58
>KOG1454|consensus
Probab=91.52 E-value=0.031 Score=57.14 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=49.6
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
+.+|||..|+.|.++|....++..+ +.. |..+..|.+|||.+..++|+..
T Consensus 264 ~~pvlii~G~~D~~~p~~~~~~~~~-----------------------------~~p-n~~~~~I~~~gH~~h~e~Pe~~ 313 (326)
T KOG1454|consen 264 KCPVLIIWGDKDQIVPLELAEELKK-----------------------------KLP-NAELVEIPGAGHLPHLERPEEV 313 (326)
T ss_pred CCceEEEEcCcCCccCHHHHHHHHh-----------------------------hCC-CceEEEeCCCCcccccCCHHHH
Confidence 4889999999999998773333222 233 8899999999999999999999
Q ss_pred hhhhhhcccC
Q psy6387 472 FDLITRFTHG 481 (483)
Q Consensus 472 ~~mi~~fl~~ 481 (483)
...|..|+..
T Consensus 314 ~~~i~~Fi~~ 323 (326)
T KOG1454|consen 314 AALLRSFIAR 323 (326)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 59
>KOG1515|consensus
Probab=91.46 E-value=0.13 Score=52.69 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=80.8
Q ss_pred CceeeEEEeecccccCC-CCCcEEEEEeCCCCccccccccccccccccccccCCCccccccccccccc-ccceEEEeeCC
Q psy6387 86 HSSALFFWFFPAQEKNA-SEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWT-KNHNVIYIDNP 163 (483)
Q Consensus 86 ~~~~lFfwf~ea~~~p~-~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~-~~anlLyiDqP 163 (483)
...+++-+.|.....+. .++|++||++||=-|-+..-. . ...+-.++. +..+.+-|
T Consensus 70 ~~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~-------------~------~y~~~~~~~a~~~~~vvv--- 127 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANS-------------P------AYDSFCTRLAAELNCVVV--- 127 (336)
T ss_pred CCCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCC-------------c------hhHHHHHHHHHHcCeEEE---
Confidence 45789999998877663 589999999999666442100 0 111112222 44455543
Q ss_pred ccCceeeeeecccccccCcceeeeeeehhHHHH-----HHhhhcccCceEEeccccccccccceeEEEecCCCCCCCccc
Q psy6387 164 VGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFF-----KIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKD 238 (483)
Q Consensus 164 vGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~-----~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~ 238 (483)
.++|--+-. +.++..- +|-+.+|+-|+ +..-.. ..++|+|.|=||..+-.+|.++.+.. ..
T Consensus 128 -SVdYRLAPE-h~~Pa~y----~D~~~Al~w~~~~~~~~~~~D~--~rv~l~GDSaGGNia~~va~r~~~~~------~~ 193 (336)
T KOG1515|consen 128 -SVDYRLAPE-HPFPAAY----DDGWAALKWVLKNSWLKLGADP--SRVFLAGDSAGGNIAHVVAQRAADEK------LS 193 (336)
T ss_pred -ecCcccCCC-CCCCccc----hHHHHHHHHHHHhHHHHhCCCc--ccEEEEccCccHHHHHHHHHHHhhcc------CC
Confidence 244443222 1233222 33344454444 333222 23999999999999988888887631 23
Q ss_pred ccccceeeecCCCCCcch
Q psy6387 239 KINLKGIAIGNGLCDPLN 256 (483)
Q Consensus 239 ~inLkGi~IGNg~~dp~~ 256 (483)
++.|+|+++--|++....
T Consensus 194 ~~ki~g~ili~P~~~~~~ 211 (336)
T KOG1515|consen 194 KPKIKGQILIYPFFQGTD 211 (336)
T ss_pred CcceEEEEEEecccCCCC
Confidence 578999999888775433
No 60
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=91.23 E-value=0.21 Score=46.23 Aligned_cols=105 Identities=25% Similarity=0.243 Sum_probs=61.8
Q ss_pred CcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCcce
Q psy6387 105 APVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHV 184 (483)
Q Consensus 105 ~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~ 184 (483)
.|.+++++|+|+++.......+. +..... + .+++.+|+| |.|.|. .. .+ .
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~----------------~~~~~~---~-~~~~~~d~~-g~g~s~--~~-~~------~ 70 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKV----------------LPALAA---R-YRVIAPDLR-GHGRSD--PA-GY------S 70 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHH----------------hhcccc---c-eEEEEeccc-CCCCCC--cc-cc------c
Confidence 56999999999988765331000 111111 1 789999999 999995 10 00 0
Q ss_pred eeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCc
Q psy6387 185 GVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDP 254 (483)
Q Consensus 185 a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp 254 (483)
.......+..|++ ++...++.+.|+|+||..+-.++.+..+ .++++++-++...+
T Consensus 71 ~~~~~~~~~~~~~---~~~~~~~~l~G~S~Gg~~~~~~~~~~p~------------~~~~~v~~~~~~~~ 125 (282)
T COG0596 71 LSAYADDLAALLD---ALGLEKVVLVGHSMGGAVALALALRHPD------------RVRGLVLIGPAPPP 125 (282)
T ss_pred HHHHHHHHHHHHH---HhCCCceEEEEecccHHHHHHHHHhcch------------hhheeeEecCCCCc
Confidence 0111234444444 3444459999999998766555543321 46677666655543
No 61
>PLN02965 Probable pheophorbidase
Probab=91.21 E-value=0.03 Score=54.50 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=46.9
Q ss_pred cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhccc-CceEEeccccccccccceeEEEecCCCC
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQS-NDFYVTGESYAGKYVPALAYTIHLNNPE 232 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~-~~~yi~GESYaG~yvP~lA~~I~~~n~~ 232 (483)
...+|-+|.| |.|.|-.... ...+.++.|+|+.+ +++. +.. +++++.|+|+||..+..+|.+.-+
T Consensus 30 ~~~via~Dl~-G~G~S~~~~~--~~~~~~~~a~dl~~----~l~~---l~~~~~~~lvGhSmGG~ia~~~a~~~p~---- 95 (255)
T PLN02965 30 GFKSTCVDLT-GAGISLTDSN--TVSSSDQYNRPLFA----LLSD---LPPDHKVILVGHSIGGGSVTEALCKFTD---- 95 (255)
T ss_pred CceEEEecCC-cCCCCCCCcc--ccCCHHHHHHHHHH----HHHh---cCCCCCEEEEecCcchHHHHHHHHhCch----
Confidence 4689999955 9998832211 11223444444443 3332 333 589999999999888887753211
Q ss_pred CCCcccccccceeeecCCC
Q psy6387 233 QGSEKDKINLKGIAIGNGL 251 (483)
Q Consensus 233 ~~~~~~~inLkGi~IGNg~ 251 (483)
.++++++-|+.
T Consensus 96 --------~v~~lvl~~~~ 106 (255)
T PLN02965 96 --------KISMAIYVAAA 106 (255)
T ss_pred --------heeEEEEEccc
Confidence 35777776664
No 62
>PRK10115 protease 2; Provisional
Probab=91.00 E-value=0.12 Score=58.08 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=75.5
Q ss_pred CceeeEEEeec-cc-ccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCC
Q psy6387 86 HSSALFFWFFP-AQ-EKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNP 163 (483)
Q Consensus 86 ~~~~lFfwf~e-a~-~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqP 163 (483)
.|..+-.|++- .. ... .+.|+||+..||||.|...++..+. .+|...-=++.+=++
T Consensus 425 DG~~Ip~~l~~~~~~~~~-~~~P~ll~~hGg~~~~~~p~f~~~~---------------------~~l~~rG~~v~~~n~ 482 (686)
T PRK10115 425 DGVEVPVSLVYHRKHFRK-GHNPLLVYGYGSYGASIDADFSFSR---------------------LSLLDRGFVYAIVHV 482 (686)
T ss_pred CCCEEEEEEEEECCCCCC-CCCCEEEEEECCCCCCCCCCccHHH---------------------HHHHHCCcEEEEEEc
Confidence 34555544442 21 123 5569999999999998654433332 234444444555557
Q ss_pred ccCceeeeee--cccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccc
Q psy6387 164 VGTGFSFVEH--NDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKIN 241 (483)
Q Consensus 164 vGtGfSy~~~--~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~in 241 (483)
.|.| .|+.. ..+.-.+-...-+|+..+.+...+. .--....+.|.|-||||..+-+++. +.+ =-
T Consensus 483 RGs~-g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~-g~~d~~rl~i~G~S~GG~l~~~~~~----~~P--------dl 548 (686)
T PRK10115 483 RGGG-ELGQQWYEDGKFLKKKNTFNDYLDACDALLKL-GYGSPSLCYGMGGSAGGMLMGVAIN----QRP--------EL 548 (686)
T ss_pred CCCC-ccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCChHHeEEEEECHHHHHHHHHHh----cCh--------hh
Confidence 7754 23321 1111111113345555555433333 2233467999999999975544431 111 14
Q ss_pred cceeeecCCCCCcchh
Q psy6387 242 LKGIAIGNGLCDPLNM 257 (483)
Q Consensus 242 LkGi~IGNg~~dp~~q 257 (483)
++.++.++|++|....
T Consensus 549 f~A~v~~vp~~D~~~~ 564 (686)
T PRK10115 549 FHGVIAQVPFVDVVTT 564 (686)
T ss_pred eeEEEecCCchhHhhh
Confidence 8999999999998764
No 63
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=90.31 E-value=0.2 Score=51.13 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=46.8
Q ss_pred ccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCc-eEEeccccccccccceeEEEecCCC
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSND-FYVTGESYAGKYVPALAYTIHLNNP 231 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~-~yi~GESYaG~yvP~lA~~I~~~n~ 231 (483)
+...+|.+|.| |-|-|. ...+ +.++.|+|+.++| + ++.-.+ +.|.|.|+||..+-.+|.+--
T Consensus 98 ~~~~Vi~~Dl~-G~g~s~---~~~~--~~~~~a~dl~~ll----~---~l~l~~~~~lvG~SmGG~vA~~~A~~~P---- 160 (343)
T PRK08775 98 ARFRLLAFDFI-GADGSL---DVPI--DTADQADAIALLL----D---ALGIARLHAFVGYSYGALVGLQFASRHP---- 160 (343)
T ss_pred cccEEEEEeCC-CCCCCC---CCCC--CHHHHHHHHHHHH----H---HcCCCcceEEEEECHHHHHHHHHHHHCh----
Confidence 46789999988 666552 1112 2233455554443 3 233334 679999999987777775321
Q ss_pred CCCCcccccccceeeecCCCCC
Q psy6387 232 EQGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 232 ~~~~~~~~inLkGi~IGNg~~d 253 (483)
=.++++++.++...
T Consensus 161 --------~~V~~LvLi~s~~~ 174 (343)
T PRK08775 161 --------ARVRTLVVVSGAHR 174 (343)
T ss_pred --------HhhheEEEECcccc
Confidence 14788888877543
No 64
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=90.28 E-value=0.068 Score=54.84 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=45.6
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhh-hcCCcccccCCccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLV-RNAGHMVPKDQSEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V-~~AGHmvP~DqP~~ 470 (483)
.++||+..|+.|.++|....+...+.+. ......+++.| .+|||+++.++|+.
T Consensus 288 ~~P~Lvi~G~~D~~~p~~~~~~~a~~i~--------------------------~~~~~v~~~~i~~~~GH~~~le~p~~ 341 (351)
T TIGR01392 288 KAPFLVVSITSDWLFPPAESRELAKALP--------------------------AAGLRVTYVEIESPYGHDAFLVETDQ 341 (351)
T ss_pred CCCEEEEEeCCccccCHHHHHHHHHHHh--------------------------hcCCceEEEEeCCCCCcchhhcCHHH
Confidence 6899999999999999776555443332 11101122234 58999999999999
Q ss_pred hhhhhhhccc
Q psy6387 471 AFDLITRFTH 480 (483)
Q Consensus 471 a~~mi~~fl~ 480 (483)
..+.|.+|++
T Consensus 342 ~~~~l~~FL~ 351 (351)
T TIGR01392 342 VEELIRGFLR 351 (351)
T ss_pred HHHHHHHHhC
Confidence 9999999974
No 65
>PRK10566 esterase; Provisional
Probab=90.23 E-value=0.11 Score=49.91 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=43.9
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
..+||+.+|+.|.+++...++++.+.++=.|. .. +++++++.|+||... | ..
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~-----------------------~~-~~~~~~~~~~~H~~~---~-~~ 237 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGL-----------------------DK-NLTCLWEPGVRHRIT---P-EA 237 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCC-----------------------Cc-ceEEEecCCCCCccC---H-HH
Confidence 46899999999999998877766555531110 12 477788899999975 2 35
Q ss_pred hhhhhhcccCC
Q psy6387 472 FDLITRFTHGS 482 (483)
Q Consensus 472 ~~mi~~fl~~~ 482 (483)
++-+.+|+...
T Consensus 238 ~~~~~~fl~~~ 248 (249)
T PRK10566 238 LDAGVAFFRQH 248 (249)
T ss_pred HHHHHHHHHhh
Confidence 66667776543
No 66
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=89.92 E-value=0.51 Score=51.68 Aligned_cols=129 Identities=16% Similarity=0.079 Sum_probs=75.3
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCccccccccccccc-ccceEEEeeCCcc
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWT-KNHNVIYIDNPVG 165 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~-~~anlLyiDqPvG 165 (483)
+..|+.+.+.... . +..|+||.++|-...+.... +.. .. ...-|. +-..++-+| ..|
T Consensus 6 G~~L~~~~~~P~~-~-~~~P~Il~~~gyg~~~~~~~-----~~~-------------~~-~~~~l~~~Gy~vv~~D-~RG 63 (550)
T TIGR00976 6 GTRLAIDVYRPAG-G-GPVPVILSRTPYGKDAGLRW-----GLD-------------KT-EPAWFVAQGYAVVIQD-TRG 63 (550)
T ss_pred CCEEEEEEEecCC-C-CCCCEEEEecCCCCchhhcc-----ccc-------------cc-cHHHHHhCCcEEEEEe-ccc
Confidence 5678776654332 3 56899999986433221100 000 00 001122 357889999 679
Q ss_pred CceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCccccccccee
Q psy6387 166 TGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGI 245 (483)
Q Consensus 166 tGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi 245 (483)
.|.|-.... .. + .+.++|+.++++ |+..-|. .+.++.++|.||||...-.+|.. .. -.||++
T Consensus 64 ~g~S~g~~~--~~-~-~~~~~D~~~~i~-~l~~q~~-~~~~v~~~G~S~GG~~a~~~a~~---~~---------~~l~ai 125 (550)
T TIGR00976 64 RGASEGEFD--LL-G-SDEAADGYDLVD-WIAKQPW-CDGNVGMLGVSYLAVTQLLAAVL---QP---------PALRAI 125 (550)
T ss_pred cccCCCceE--ec-C-cccchHHHHHHH-HHHhCCC-CCCcEEEEEeChHHHHHHHHhcc---CC---------CceeEE
Confidence 999964322 11 1 445667755544 6665553 34589999999999765555532 11 258899
Q ss_pred eecCCCCCcc
Q psy6387 246 AIGNGLCDPL 255 (483)
Q Consensus 246 ~IGNg~~dp~ 255 (483)
+.-+++.|..
T Consensus 126 v~~~~~~d~~ 135 (550)
T TIGR00976 126 APQEGVWDLY 135 (550)
T ss_pred eecCcccchh
Confidence 8888877643
No 67
>PRK05855 short chain dehydrogenase; Validated
Probab=88.59 E-value=0.27 Score=53.41 Aligned_cols=98 Identities=11% Similarity=0.118 Sum_probs=59.7
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccC
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGT 166 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGt 166 (483)
+..|.|+-+. + .+.|.||.++|.++.+..+.-+.+ . + .+...++-+|.| |.
T Consensus 12 g~~l~~~~~g----~-~~~~~ivllHG~~~~~~~w~~~~~----------~------L-------~~~~~Vi~~D~~-G~ 62 (582)
T PRK05855 12 GVRLAVYEWG----D-PDRPTVVLVHGYPDNHEVWDGVAP----------L------L-------ADRFRVVAYDVR-GA 62 (582)
T ss_pred CEEEEEEEcC----C-CCCCeEEEEcCCCchHHHHHHHHH----------H------h-------hcceEEEEecCC-CC
Confidence 4567776542 2 457899999999766554321111 0 2 234789999966 99
Q ss_pred ceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEecccccccccc
Q psy6387 167 GFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVP 220 (483)
Q Consensus 167 GfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP 220 (483)
|.|..... ....+.++.++|+..+++..- ...+++|.|+|+||..+-
T Consensus 63 G~S~~~~~-~~~~~~~~~a~dl~~~i~~l~------~~~~~~lvGhS~Gg~~a~ 109 (582)
T PRK05855 63 GRSSAPKR-TAAYTLARLADDFAAVIDAVS------PDRPVHLLAHDWGSIQGW 109 (582)
T ss_pred CCCCCCCc-ccccCHHHHHHHHHHHHHHhC------CCCcEEEEecChHHHHHH
Confidence 99953222 112234556666666665420 135699999999995543
No 68
>KOG1455|consensus
Probab=88.47 E-value=0.48 Score=47.33 Aligned_cols=112 Identities=20% Similarity=0.108 Sum_probs=72.7
Q ss_pred CceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCcc
Q psy6387 86 HSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVG 165 (483)
Q Consensus 86 ~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvG 165 (483)
.+..||.-.+..+..+ +-+-+|+.++|.=+-||-. |.+.=. +++.. -.-+--+|+ .|
T Consensus 36 rG~~lft~~W~p~~~~-~pr~lv~~~HG~g~~~s~~--~~~~a~-~l~~~------------------g~~v~a~D~-~G 92 (313)
T KOG1455|consen 36 RGAKLFTQSWLPLSGT-EPRGLVFLCHGYGEHSSWR--YQSTAK-RLAKS------------------GFAVYAIDY-EG 92 (313)
T ss_pred CCCEeEEEecccCCCC-CCceEEEEEcCCcccchhh--HHHHHH-HHHhC------------------CCeEEEeec-cC
Confidence 4678888777666655 6677888888865555421 111100 01111 123466885 49
Q ss_pred CceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEecccccccccccee
Q psy6387 166 TGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALA 223 (483)
Q Consensus 166 tGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA 223 (483)
-|.|- .-+.|..+-+.+++|+..|+..+- ...++++.|.|+.|||-||-.+-.++
T Consensus 93 hG~Sd--Gl~~yi~~~d~~v~D~~~~~~~i~-~~~e~~~lp~FL~GeSMGGAV~Ll~~ 147 (313)
T KOG1455|consen 93 HGRSD--GLHAYVPSFDLVVDDVISFFDSIK-EREENKGLPRFLFGESMGGAVALLIA 147 (313)
T ss_pred CCcCC--CCcccCCcHHHHHHHHHHHHHHHh-hccccCCCCeeeeecCcchHHHHHHH
Confidence 99995 344688888888888776665544 35688999999999999995443333
No 69
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=88.41 E-value=0.057 Score=51.03 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=59.8
Q ss_pred cccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCC
Q psy6387 152 TKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNP 231 (483)
Q Consensus 152 ~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~ 231 (483)
.+-..|+.+|..-+.||+..-........-....+|+.++++...+.. ......+.|+|.||||+.+-.++. +. +
T Consensus 12 ~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~iD~~ri~i~G~S~GG~~a~~~~~---~~-~ 86 (213)
T PF00326_consen 12 SQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQY-YIDPDRIGIMGHSYGGYLALLAAT---QH-P 86 (213)
T ss_dssp TTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTT-SEEEEEEEEEEETHHHHHHHHHHH---HT-C
T ss_pred hCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccc-cccceeEEEEcccccccccchhhc---cc-c
Confidence 355789999988888887543322222222344566666666555543 556678999999999988776664 11 1
Q ss_pred CCCCcccccccceeeecCCCCCcchh
Q psy6387 232 EQGSEKDKINLKGIAIGNGLCDPLNM 257 (483)
Q Consensus 232 ~~~~~~~~inLkGi~IGNg~~dp~~q 257 (483)
-..+.++.++|.+|+...
T Consensus 87 --------~~f~a~v~~~g~~d~~~~ 104 (213)
T PF00326_consen 87 --------DRFKAAVAGAGVSDLFSY 104 (213)
T ss_dssp --------CGSSEEEEESE-SSTTCS
T ss_pred --------eeeeeeeccceecchhcc
Confidence 247899999999887654
No 70
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=88.24 E-value=0.17 Score=53.01 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=54.0
Q ss_pred ccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCC
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPE 232 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~ 232 (483)
+-.+||=||-| |||+|.. +.-+ +-.+.+++.+.+|+..-|+.-...+-++|-|+||.|++.+|+. +.
T Consensus 217 rGiA~LtvDmP-G~G~s~~-----~~l~--~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~l--e~--- 283 (411)
T PF06500_consen 217 RGIAMLTVDMP-GQGESPK-----WPLT--QDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAAL--ED--- 283 (411)
T ss_dssp CT-EEEEE--T-TSGGGTT-----T-S---S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHH--TT---
T ss_pred CCCEEEEEccC-CCccccc-----CCCC--cCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHh--cc---
Confidence 44679999977 9999832 1112 2245678889999999999999999999999999999988841 11
Q ss_pred CCCcccccccceeeecCCCCC
Q psy6387 233 QGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 233 ~~~~~~~inLkGi~IGNg~~d 253 (483)
-.|||++.-.|.++
T Consensus 284 -------~RlkavV~~Ga~vh 297 (411)
T PF06500_consen 284 -------PRLKAVVALGAPVH 297 (411)
T ss_dssp -------TT-SEEEEES---S
T ss_pred -------cceeeEeeeCchHh
Confidence 13788666555443
No 71
>PRK07581 hypothetical protein; Validated
Probab=88.23 E-value=0.34 Score=49.26 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=46.8
Q ss_pred ccceEEEeeCCccCceeeeeecc--cccccC---cceeeeeeehhHHHHHHhhhcccCc-eEEeccccccccccceeEEE
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHND--LYSRNE---SHVGVNLYIGLVQFFKIFKEYQSND-FYVTGESYAGKYVPALAYTI 226 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~--~~~~~~---~~~a~d~~~fL~~F~~~fPe~~~~~-~yi~GESYaG~yvP~lA~~I 226 (483)
+...+|-+|.| |.|.|-..... .+.... ...++++. ++..++.. ++.-.+ .+|.|.|+||..+-.+|.+-
T Consensus 70 ~~~~vi~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~--~lgi~~~~~lvG~S~GG~va~~~a~~~ 145 (339)
T PRK07581 70 EKYFIIIPNMF-GNGLSSSPSNTPAPFNAARFPHVTIYDNVR-AQHRLLTE--KFGIERLALVVGWSMGAQQTYHWAVRY 145 (339)
T ss_pred CceEEEEecCC-CCCCCCCCCCCCCCCCCCCCCceeHHHHHH-HHHHHHHH--HhCCCceEEEEEeCHHHHHHHHHHHHC
Confidence 45789999977 99988322110 111110 11333332 22222321 244567 57899999998887777543
Q ss_pred ecCCCCCCCcccccccceeeecCCCC
Q psy6387 227 HLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 227 ~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
-+ .++++++.++..
T Consensus 146 P~------------~V~~Lvli~~~~ 159 (339)
T PRK07581 146 PD------------MVERAAPIAGTA 159 (339)
T ss_pred HH------------HHhhheeeecCC
Confidence 22 367777766543
No 72
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=87.99 E-value=0.078 Score=55.19 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=47.4
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhh-cCCcccccCCccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVR-NAGHMVPKDQSEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~-~AGHmvP~DqP~~ 470 (483)
.++|||..|+.|.++|....+.....+. ..+...+++.|. ++||+.+.++|++
T Consensus 309 ~~PtLvI~G~~D~~~p~~~~~~la~~i~--------------------------~a~~~~~l~~i~~~~GH~~~le~p~~ 362 (379)
T PRK00175 309 KARFLVVSFTSDWLFPPARSREIVDALL--------------------------AAGADVSYAEIDSPYGHDAFLLDDPR 362 (379)
T ss_pred CCCEEEEEECCccccCHHHHHHHHHHHH--------------------------hcCCCeEEEEeCCCCCchhHhcCHHH
Confidence 6899999999999998765443333221 111123556665 8999999999999
Q ss_pred hhhhhhhcccC
Q psy6387 471 AFDLITRFTHG 481 (483)
Q Consensus 471 a~~mi~~fl~~ 481 (483)
..+.|.+|+..
T Consensus 363 ~~~~L~~FL~~ 373 (379)
T PRK00175 363 YGRLVRAFLER 373 (379)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 73
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=87.79 E-value=0.087 Score=52.43 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=48.4
Q ss_pred ccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCC
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPE 232 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~ 232 (483)
...|++.+|-+.+..-.|.. -..+...+++++.++|+...+.. .+...+++|.|+|.||+.+-.+|.+.-+
T Consensus 65 ~~~nVi~vD~~~~~~~~y~~----a~~~~~~v~~~la~~l~~L~~~~-g~~~~~i~lIGhSlGa~vAg~~a~~~~~---- 135 (275)
T cd00707 65 GDYNVIVVDWGRGANPNYPQ----AVNNTRVVGAELAKFLDFLVDNT-GLSLENVHLIGHSLGAHVAGFAGKRLNG---- 135 (275)
T ss_pred CCCEEEEEECccccccChHH----HHHhHHHHHHHHHHHHHHHHHhc-CCChHHEEEEEecHHHHHHHHHHHHhcC----
Confidence 45899999987652211211 11123345555555555444332 2344679999999999988777764421
Q ss_pred CCCcccccccceeeecCCC
Q psy6387 233 QGSEKDKINLKGIAIGNGL 251 (483)
Q Consensus 233 ~~~~~~~inLkGi~IGNg~ 251 (483)
.++.|+.-++.
T Consensus 136 --------~v~~iv~LDPa 146 (275)
T cd00707 136 --------KLGRITGLDPA 146 (275)
T ss_pred --------ccceeEEecCC
Confidence 36677765543
No 74
>KOG2100|consensus
Probab=87.78 E-value=0.5 Score=53.78 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=77.0
Q ss_pred ceeeEEEeecccc-cCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccc-cceEEEeeCCc
Q psy6387 87 SSALFFWFFPAQE-KNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTK-NHNVIYIDNPV 164 (483)
Q Consensus 87 ~~~lFfwf~ea~~-~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~-~anlLyiDqPv 164 (483)
+-...+++.-..+ ++.++-||+++.-|||+.-+-.+.|. +..|.+.+.. .+=++.|| +.
T Consensus 507 ~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~------------------~~~~~~~~s~~g~~v~~vd-~R 567 (755)
T KOG2100|consen 507 GITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFS------------------VDWNEVVVSSRGFAVLQVD-GR 567 (755)
T ss_pred cEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEE------------------ecHHHHhhccCCeEEEEEc-CC
Confidence 3456666655443 33266799999999999322221111 3333333332 35678888 99
Q ss_pred cCceeeeeecccccccC-cceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccc
Q psy6387 165 GTGFSFVEHNDLYSRNE-SHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLK 243 (483)
Q Consensus 165 GtGfSy~~~~~~~~~~~-~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLk 243 (483)
|+|+.=.+--.....+. +.-.+|...+.+.+.+.+ -.-...+.|+|-||||- ++..++.+-+ .--+|
T Consensus 568 Gs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~-~iD~~ri~i~GwSyGGy----~t~~~l~~~~-------~~~fk 635 (755)
T KOG2100|consen 568 GSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLP-FIDRSRVAIWGWSYGGY----LTLKLLESDP-------GDVFK 635 (755)
T ss_pred CcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcc-cccHHHeEEeccChHHH----HHHHHhhhCc-------CceEE
Confidence 99976322111222222 123456667777777765 33344699999999994 4444444321 11244
Q ss_pred eeeecCCCCCcc
Q psy6387 244 GIAIGNGLCDPL 255 (483)
Q Consensus 244 Gi~IGNg~~dp~ 255 (483)
.-+.-+|.+|..
T Consensus 636 cgvavaPVtd~~ 647 (755)
T KOG2100|consen 636 CGVAVAPVTDWL 647 (755)
T ss_pred EEEEecceeeee
Confidence 435567777665
No 75
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=85.51 E-value=0.54 Score=46.48 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=50.2
Q ss_pred cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCC
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQ 233 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~ 233 (483)
-.+++-+|.| |.|.|-... .+.++..+|+..+++.+-+..|.+ .++.+.|.|.||..+-.+|.. .
T Consensus 57 G~~v~~~Dl~-G~G~S~~~~-----~~~~~~~~d~~~~~~~l~~~~~g~--~~i~l~G~S~Gg~~a~~~a~~----~--- 121 (274)
T TIGR03100 57 GFPVLRFDYR-GMGDSEGEN-----LGFEGIDADIAAAIDAFREAAPHL--RRIVAWGLCDAASAALLYAPA----D--- 121 (274)
T ss_pred CCEEEEeCCC-CCCCCCCCC-----CCHHHHHHHHHHHHHHHHhhCCCC--CcEEEEEECHHHHHHHHHhhh----C---
Confidence 3788999976 999884221 122334456555555544444433 459999999999765444421 0
Q ss_pred CCcccccccceeeecCCCCC
Q psy6387 234 GSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 234 ~~~~~~inLkGi~IGNg~~d 253 (483)
-.++|+++-|+++.
T Consensus 122 ------~~v~~lil~~p~~~ 135 (274)
T TIGR03100 122 ------LRVAGLVLLNPWVR 135 (274)
T ss_pred ------CCccEEEEECCccC
Confidence 14899999998854
No 76
>PRK06489 hypothetical protein; Provisional
Probab=84.96 E-value=0.19 Score=51.82 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=65.4
Q ss_pred ceeeEEEeecccc---cCCCCCcEEEEEeCCCCccccccccccccccccccccCCCccccccc-ccccccccceEEEeeC
Q psy6387 87 SSALFFWFFPAQE---KNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDT-RKTHWTKNHNVIYIDN 162 (483)
Q Consensus 87 ~~~lFfwf~ea~~---~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~-n~~sW~~~anlLyiDq 162 (483)
+..++|.-+.... ++ ++.|.||.++|++|.+...- .|.... . +.. ...--.+..++|.+|.
T Consensus 49 g~~i~y~~~G~~~~~~~~-~~gpplvllHG~~~~~~~~~-----~~~~~~---~------l~~~~~~l~~~~~~Via~Dl 113 (360)
T PRK06489 49 ELRLHYTTLGTPHRNADG-EIDNAVLVLHGTGGSGKSFL-----SPTFAG---E------LFGPGQPLDASKYFIILPDG 113 (360)
T ss_pred CceEEEEecCCCCccccc-CCCCeEEEeCCCCCchhhhc-----cchhHH---H------hcCCCCcccccCCEEEEeCC
Confidence 3556666443211 12 33688999999988654421 010000 0 000 0000125578999996
Q ss_pred CccCceeeeeeccccc-----ccCcceeeeeeehhHHHHHHhhhcccCceE-EeccccccccccceeEEEecCCCCCCCc
Q psy6387 163 PVGTGFSFVEHNDLYS-----RNESHVGVNLYIGLVQFFKIFKEYQSNDFY-VTGESYAGKYVPALAYTIHLNNPEQGSE 236 (483)
Q Consensus 163 PvGtGfSy~~~~~~~~-----~~~~~~a~d~~~fL~~F~~~fPe~~~~~~y-i~GESYaG~yvP~lA~~I~~~n~~~~~~ 236 (483)
| |.|.|-...+ ... .+-++.++ .+..++.. ++.-.+++ |.|.|.||..+-.+|.+--+
T Consensus 114 ~-GhG~S~~p~~-~~~~~~~~~~~~~~a~----~~~~~l~~--~lgi~~~~~lvG~SmGG~vAl~~A~~~P~-------- 177 (360)
T PRK06489 114 I-GHGKSSKPSD-GLRAAFPRYDYDDMVE----AQYRLVTE--GLGVKHLRLILGTSMGGMHAWMWGEKYPD-------- 177 (360)
T ss_pred C-CCCCCCCCCc-CCCCCCCcccHHHHHH----HHHHHHHH--hcCCCceeEEEEECHHHHHHHHHHHhCch--------
Confidence 6 9998832111 110 11122222 22333211 23334564 89999999877777643211
Q ss_pred ccccccceeeecCCC
Q psy6387 237 KDKINLKGIAIGNGL 251 (483)
Q Consensus 237 ~~~inLkGi~IGNg~ 251 (483)
.++++++-++.
T Consensus 178 ----~V~~LVLi~s~ 188 (360)
T PRK06489 178 ----FMDALMPMASQ 188 (360)
T ss_pred ----hhheeeeeccC
Confidence 36777766553
No 77
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=84.12 E-value=0.59 Score=47.11 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=79.1
Q ss_pred CceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCcc
Q psy6387 86 HSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVG 165 (483)
Q Consensus 86 ~~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvG 165 (483)
.+..++|+.+++.+++ . -+|++++|.=.++.-. .|. -.+ +.. .-..++=+|.| |
T Consensus 18 d~~~~~~~~~~~~~~~-~--g~Vvl~HG~~Eh~~ry---~~l-----a~~--------l~~------~G~~V~~~D~R-G 71 (298)
T COG2267 18 DGTRLRYRTWAAPEPP-K--GVVVLVHGLGEHSGRY---EEL-----ADD--------LAA------RGFDVYALDLR-G 71 (298)
T ss_pred CCceEEEEeecCCCCC-C--cEEEEecCchHHHHHH---HHH-----HHH--------HHh------CCCEEEEecCC-C
Confidence 4678999999988755 4 8999999984443322 110 001 111 23567778865 9
Q ss_pred CceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCccccccccee
Q psy6387 166 TGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGI 245 (483)
Q Consensus 166 tGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi 245 (483)
-|.|.. ...+...+-.+...|+-.+++..-.. ....|+||.|+|=||-.+...+.+-- -.++|+
T Consensus 72 hG~S~r-~~rg~~~~f~~~~~dl~~~~~~~~~~---~~~~p~~l~gHSmGg~Ia~~~~~~~~------------~~i~~~ 135 (298)
T COG2267 72 HGRSPR-GQRGHVDSFADYVDDLDAFVETIAEP---DPGLPVFLLGHSMGGLIALLYLARYP------------PRIDGL 135 (298)
T ss_pred CCCCCC-CCcCCchhHHHHHHHHHHHHHHHhcc---CCCCCeEEEEeCcHHHHHHHHHHhCC------------ccccEE
Confidence 999962 22233333333333433333332222 34679999999999977666554322 368999
Q ss_pred eecCCCCCcc
Q psy6387 246 AIGNGLCDPL 255 (483)
Q Consensus 246 ~IGNg~~dp~ 255 (483)
++-+|++.+.
T Consensus 136 vLssP~~~l~ 145 (298)
T COG2267 136 VLSSPALGLG 145 (298)
T ss_pred EEECccccCC
Confidence 9999988765
No 78
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=83.75 E-value=0.19 Score=52.66 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=49.0
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhc-CCcccccCCccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRN-AGHMVPKDQSEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~-AGHmvP~DqP~~ 470 (483)
..+||+..|+.|.++|....++..+.+. ..+.+.++++|.+ +||+.+.++|+.
T Consensus 323 ~~PtLvI~G~~D~l~p~~~~~~la~~lp--------------------------~~~~~a~l~~I~s~~GH~~~le~p~~ 376 (389)
T PRK06765 323 EANVLMIPCKQDLLQPPRYNYKMVDILQ--------------------------KQGKYAEVYEIESINGHMAGVFDIHL 376 (389)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHhh--------------------------hcCCCeEEEEECCCCCcchhhcCHHH
Confidence 6899999999999998764443333321 1111456677875 999999999999
Q ss_pred hhhhhhhcccCC
Q psy6387 471 AFDLITRFTHGS 482 (483)
Q Consensus 471 a~~mi~~fl~~~ 482 (483)
..+.|.+|+..|
T Consensus 377 ~~~~I~~FL~~~ 388 (389)
T PRK06765 377 FEKKIYEFLNRK 388 (389)
T ss_pred HHHHHHHHHccc
Confidence 999999999765
No 79
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=83.07 E-value=0.19 Score=42.29 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=45.9
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
..+||+.++..|.++|+.+.++..+.|. +=..+++.++||-+-...-.-+
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~------------------------------~s~lvt~~g~gHg~~~~~s~C~ 83 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLP------------------------------GSRLVTVDGAGHGVYAGGSPCV 83 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCC------------------------------CceEEEEeccCcceecCCChHH
Confidence 4899999999999999998888777654 2245888889999986444566
Q ss_pred hhhhhhccc
Q psy6387 472 FDLITRFTH 480 (483)
Q Consensus 472 ~~mi~~fl~ 480 (483)
.+++++|+.
T Consensus 84 ~~~v~~yl~ 92 (103)
T PF08386_consen 84 DKAVDDYLL 92 (103)
T ss_pred HHHHHHHHH
Confidence 777777764
No 80
>PLN00021 chlorophyllase
Probab=82.08 E-value=0.53 Score=47.81 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=28.6
Q ss_pred cCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 204 SNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 204 ~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
..+++|+|+|.||..+-.+|.+.-.. .....+++++.-+++.
T Consensus 125 ~~~v~l~GHS~GG~iA~~lA~~~~~~-------~~~~~v~ali~ldPv~ 166 (313)
T PLN00021 125 LSKLALAGHSRGGKTAFALALGKAAV-------SLPLKFSALIGLDPVD 166 (313)
T ss_pred hhheEEEEECcchHHHHHHHhhcccc-------ccccceeeEEeecccc
Confidence 35799999999999887777543321 1124577777766654
No 81
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=81.68 E-value=1.6 Score=45.39 Aligned_cols=132 Identities=12% Similarity=0.020 Sum_probs=72.1
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCCCccccccc----------cccc-cccccccccCCCcccccccccccccccc
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGL----------FQEH-GPLMLNKTKKNQTLPYLDTRKTHWTKNH 155 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Gl----------f~E~-GP~~v~~~~~~~~~~~l~~n~~sW~~~a 155 (483)
+.+++|+-+-.. ++ ...|.||.++|-+|.+..... +..+ ||-+ . +- .+..
T Consensus 32 ~~~~~y~~~G~~-~~-~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-----~------l~------~~~~ 92 (379)
T PRK00175 32 PVELAYETYGTL-NA-DRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGK-----P------ID------TDRY 92 (379)
T ss_pred CceEEEEecccc-CC-CCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCC-----c------cC------ccce
Confidence 356777755321 23 457999999999887764321 1111 1100 0 00 2457
Q ss_pred eEEEeeCCccCceeeeeecc----ccccc---CcceeeeeeehhHHHHHHhhhcccCc-eEEeccccccccccceeEEEe
Q psy6387 156 NVIYIDNPVGTGFSFVEHND----LYSRN---ESHVGVNLYIGLVQFFKIFKEYQSND-FYVTGESYAGKYVPALAYTIH 227 (483)
Q Consensus 156 nlLyiDqPvGtGfSy~~~~~----~~~~~---~~~~a~d~~~fL~~F~~~fPe~~~~~-~yi~GESYaG~yvP~lA~~I~ 227 (483)
.||-+|.|-+.|.|-...+. +.... ..-.-+++.+.+..|++. +.-.+ ++|.|.|.||..+-.+|.+.-
T Consensus 93 ~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---l~~~~~~~lvG~S~Gg~ia~~~a~~~p 169 (379)
T PRK00175 93 FVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDA---LGITRLAAVVGGSMGGMQALEWAIDYP 169 (379)
T ss_pred EEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHH---hCCCCceEEEEECHHHHHHHHHHHhCh
Confidence 89999977545555321110 00000 011122333455555543 44456 589999999987777775421
Q ss_pred cCCCCCCCcccccccceeeecCCCC
Q psy6387 228 LNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 228 ~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
-.++++++.|+..
T Consensus 170 ------------~~v~~lvl~~~~~ 182 (379)
T PRK00175 170 ------------DRVRSALVIASSA 182 (379)
T ss_pred ------------HhhhEEEEECCCc
Confidence 2478888888643
No 82
>PRK10162 acetyl esterase; Provisional
Probab=81.53 E-value=0.55 Score=47.62 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=31.9
Q ss_pred cCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCc
Q psy6387 204 SNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDP 254 (483)
Q Consensus 204 ~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp 254 (483)
..++.|+|+|-||..+-.++.+..+.. .....++|+++..|++|.
T Consensus 153 ~~~i~l~G~SaGG~la~~~a~~~~~~~------~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 153 MSRIGFAGDSAGAMLALASALWLRDKQ------IDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred hhHEEEEEECHHHHHHHHHHHHHHhcC------CCccChhheEEECCccCC
Confidence 457999999999998888775443321 112457888888888764
No 83
>KOG2382|consensus
Probab=79.19 E-value=0.55 Score=47.35 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=27.2
Q ss_pred hhhHHhhhcCCcccccCCccchhhhhhhccc
Q psy6387 450 NFYEVLVRNAGHMVPKDQSEWAFDLITRFTH 480 (483)
Q Consensus 450 nltfv~V~~AGHmvP~DqP~~a~~mi~~fl~ 480 (483)
+..+..+++|||+|..|+|+...+.|..|+.
T Consensus 281 ~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~ 311 (315)
T KOG2382|consen 281 NVEVHELDEAGHWVHLEKPEEFIESISEFLE 311 (315)
T ss_pred chheeecccCCceeecCCHHHHHHHHHHHhc
Confidence 4556778889999999999999999999875
No 84
>PRK05855 short chain dehydrogenase; Validated
Probab=77.54 E-value=0.63 Score=50.58 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=42.6
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.+++||.+|+.|.+++....+.+.+.+ . +..++++ .+||+++.+.|+..
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~-----------------------------~-~~~~~~~-~~gH~~~~e~p~~~ 281 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWV-----------------------------P-RLWRREI-KAGHWLPMSHPQVL 281 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccC-----------------------------C-cceEEEc-cCCCcchhhChhHH
Confidence 689999999999999865443332111 1 2223334 47999999999999
Q ss_pred hhhhhhccc
Q psy6387 472 FDLITRFTH 480 (483)
Q Consensus 472 ~~mi~~fl~ 480 (483)
.+.|.+|+.
T Consensus 282 ~~~i~~fl~ 290 (582)
T PRK05855 282 AAAVAEFVD 290 (582)
T ss_pred HHHHHHHHH
Confidence 999999985
No 85
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=77.46 E-value=2 Score=46.07 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=15.9
Q ss_pred ccCceEEecccccccccccee
Q psy6387 203 QSNDFYVTGESYAGKYVPALA 223 (483)
Q Consensus 203 ~~~~~yi~GESYaG~yvP~lA 223 (483)
..+++.|+|+|.||+-+-.++
T Consensus 174 d~~~v~~~G~SaG~~~~~~~~ 194 (493)
T cd00312 174 DPDSVTIFGESAGGASVSLLL 194 (493)
T ss_pred CcceEEEEeecHHHHHhhhHh
Confidence 445799999999997654443
No 86
>KOG1838|consensus
Probab=75.96 E-value=1.6 Score=45.55 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=74.2
Q ss_pred ceeeEEEeecccc----cCCCCCcEEEEEeCCCCcccc------ccccccccccccccccCCCcccccccccccccccce
Q psy6387 87 SSALFFWFFPAQE----KNASEAPVLVWLQGGPGASSM------FGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHN 156 (483)
Q Consensus 87 ~~~lFfwf~ea~~----~p~~~~Pl~lWlnGGPG~SSl------~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~an 156 (483)
|.-..=|+..... +. .++|++|.|-|=.|.|.- .....+.| |++
T Consensus 104 G~~~lDW~~~~~~~~~~~~-~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G-~r~------------------------ 157 (409)
T KOG1838|consen 104 GTVTLDWVENPDSRCRTDD-GTDPIVVILPGLTGGSHESYVRHLVHEAQRKG-YRV------------------------ 157 (409)
T ss_pred CEEEEeeccCcccccCCCC-CCCcEEEEecCCCCCChhHHHHHHHHHHHhCC-cEE------------------------
Confidence 4455566655432 24 678999999999998864 23344455 332
Q ss_pred EEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCc
Q psy6387 157 VIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSE 236 (483)
Q Consensus 157 lLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~ 236 (483)
-|=++.|-|-|-.+++.-|.-.. .+|+-++++.-=++|| ..++|.+|.|+||..+ ..++-+..
T Consensus 158 --VVfN~RG~~g~~LtTpr~f~ag~---t~Dl~~~v~~i~~~~P---~a~l~avG~S~Gg~iL---~nYLGE~g------ 220 (409)
T KOG1838|consen 158 --VVFNHRGLGGSKLTTPRLFTAGW---TEDLREVVNHIKKRYP---QAPLFAVGFSMGGNIL---TNYLGEEG------ 220 (409)
T ss_pred --EEECCCCCCCCccCCCceeecCC---HHHHHHHHHHHHHhCC---CCceEEEEecchHHHH---HHHhhhcc------
Confidence 22237888888666665443222 2344344443335666 4699999999999854 33333321
Q ss_pred ccccccceeeecCCCC
Q psy6387 237 KDKINLKGIAIGNGLC 252 (483)
Q Consensus 237 ~~~inLkGi~IGNg~~ 252 (483)
...-=..|++|-|||-
T Consensus 221 ~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 221 DNTPLIAAVAVCNPWD 236 (409)
T ss_pred CCCCceeEEEEeccch
Confidence 1122368889999875
No 87
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.56 E-value=4 Score=40.82 Aligned_cols=106 Identities=26% Similarity=0.338 Sum_probs=60.6
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccce-----EEEee
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHN-----VIYID 161 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~an-----lLyiD 161 (483)
+...-||++.-..-| +.+||||-|+|+=|..+- ..+-..|++.|. |+|-|
T Consensus 44 g~~r~y~l~vP~g~~-~~apLvv~LHG~~~sgag------------------------~~~~sg~d~lAd~~gFlV~yPd 98 (312)
T COG3509 44 GLKRSYRLYVPPGLP-SGAPLVVVLHGSGGSGAG------------------------QLHGTGWDALADREGFLVAYPD 98 (312)
T ss_pred CCccceEEEcCCCCC-CCCCEEEEEecCCCChHH------------------------hhcccchhhhhcccCcEEECcC
Confidence 456778888777777 888999999998554332 112223444332 44443
Q ss_pred C------CccCceeeeeecccccccCcceeeeeeehhHHHHHH-hhhc--ccCceEEeccccccccccceeE
Q psy6387 162 N------PVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKI-FKEY--QSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 162 q------PvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~-fPe~--~~~~~yi~GESYaG~yvP~lA~ 224 (483)
+ |-+.|-+|...+ -....+|+ .||++..+. --|| ....+||+|-|-||..+-.++.
T Consensus 99 g~~~~wn~~~~~~~~~p~~--~~~g~ddV-----gflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac 163 (312)
T COG3509 99 GYDRAWNANGCGNWFGPAD--RRRGVDDV-----GFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLAC 163 (312)
T ss_pred ccccccCCCcccccCCccc--ccCCccHH-----HHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHh
Confidence 1 334444433221 11222333 566665532 2233 3457999999999998766654
No 88
>KOG2564|consensus
Probab=73.95 E-value=1.3 Score=43.91 Aligned_cols=88 Identities=23% Similarity=0.409 Sum_probs=56.3
Q ss_pred CCCcEEEEEeCCCCccccc-cccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccC
Q psy6387 103 SEAPVLVWLQGGPGASSMF-GLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNE 181 (483)
Q Consensus 103 ~~~Pl~lWlnGGPG~SSl~-Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~ 181 (483)
..-|+++.++|| |.|.|. ..|.- + +..+ -..-++=+| -.|.|-|-.++.++. +.
T Consensus 72 t~gpil~l~HG~-G~S~LSfA~~a~--------e--------l~s~-----~~~r~~a~D-lRgHGeTk~~~e~dl--S~ 126 (343)
T KOG2564|consen 72 TEGPILLLLHGG-GSSALSFAIFAS--------E--------LKSK-----IRCRCLALD-LRGHGETKVENEDDL--SL 126 (343)
T ss_pred CCccEEEEeecC-cccchhHHHHHH--------H--------HHhh-----cceeEEEee-ccccCccccCChhhc--CH
Confidence 577999999998 777663 22221 1 1100 011236788 889998876665443 45
Q ss_pred cceeeeeeehhHHHHHHhhhcccCceEEeccccccccc
Q psy6387 182 SHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYV 219 (483)
Q Consensus 182 ~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yv 219 (483)
+..++|+...++.+|.. . .-++.|.|+|-||-..
T Consensus 127 eT~~KD~~~~i~~~fge---~-~~~iilVGHSmGGaIa 160 (343)
T KOG2564|consen 127 ETMSKDFGAVIKELFGE---L-PPQIILVGHSMGGAIA 160 (343)
T ss_pred HHHHHHHHHHHHHHhcc---C-CCceEEEeccccchhh
Confidence 56777777777776632 2 2359999999999655
No 89
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=73.14 E-value=1.5 Score=46.71 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=40.7
Q ss_pred cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeE
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~ 224 (483)
..|+|-+|-|-+..-.|... ..+...+|+++.++|+...+.. .+.-.+++|.|+|.||+.+-.+|.
T Consensus 73 d~nVI~VDw~g~g~s~y~~a----~~~t~~vg~~la~lI~~L~~~~-gl~l~~VhLIGHSLGAhIAg~ag~ 138 (442)
T TIGR03230 73 SANVIVVDWLSRAQQHYPTS----AAYTKLVGKDVAKFVNWMQEEF-NYPWDNVHLLGYSLGAHVAGIAGS 138 (442)
T ss_pred CCEEEEEECCCcCCCCCccc----cccHHHHHHHHHHHHHHHHHhh-CCCCCcEEEEEECHHHHHHHHHHH
Confidence 47999999885432222211 1233456666665555433322 344578999999999997766654
No 90
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=67.96 E-value=1.2 Score=42.28 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=27.5
Q ss_pred hhhHHhhhcCCcccccCCccchhhhhhhccc
Q psy6387 450 NFYEVLVRNAGHMVPKDQSEWAFDLITRFTH 480 (483)
Q Consensus 450 nltfv~V~~AGHmvP~DqP~~a~~mi~~fl~ 480 (483)
+.+++.|.++||+++.++|++..+.|..|+.
T Consensus 210 ~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 240 (242)
T PRK11126 210 ALPLHVIPNAGHNAHRENPAAFAASLAQILR 240 (242)
T ss_pred cCeEEEeCCCCCchhhhChHHHHHHHHHHHh
Confidence 3566788999999999999999999999984
No 91
>PRK10566 esterase; Provisional
Probab=63.13 E-value=0.9 Score=43.61 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=58.4
Q ss_pred eEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccc-cceEEEeeCCccCce
Q psy6387 90 LFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTK-NHNVIYIDNPVGTGF 168 (483)
Q Consensus 90 lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~-~anlLyiDqPvGtGf 168 (483)
.++-++++.... +..|+||.++|++|.......+. . .+.+ -.+++.+|.| |.|-
T Consensus 13 ~~~~~~p~~~~~-~~~p~vv~~HG~~~~~~~~~~~~-----------~------------~l~~~G~~v~~~d~~-g~G~ 67 (249)
T PRK10566 13 EVLHAFPAGQRD-TPLPTVFFYHGFTSSKLVYSYFA-----------V------------ALAQAGFRVIMPDAP-MHGA 67 (249)
T ss_pred ceEEEcCCCCCC-CCCCEEEEeCCCCcccchHHHHH-----------H------------HHHhCCCEEEEecCC-cccc
Confidence 344455554333 45799999999987654321100 0 1122 3678899965 6665
Q ss_pred eeeeecccccc----cCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeE
Q psy6387 169 SFVEHNDLYSR----NESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 169 Sy~~~~~~~~~----~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~ 224 (483)
|+......... ...+..+++. .+..++...+.....+++|.|+|+||..+-.++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~ 126 (249)
T PRK10566 68 RFSGDEARRLNHFWQILLQNMQEFP-TLRAAIREEGWLLDDRLAVGGASMGGMTALGIMA 126 (249)
T ss_pred cCCCccccchhhHHHHHHHHHHHHH-HHHHHHHhcCCcCccceeEEeecccHHHHHHHHH
Confidence 54322110000 0011223332 2233443333345578999999999998876654
No 92
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=59.44 E-value=8.8 Score=36.93 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=24.4
Q ss_pred ehhHHHHHHhhhcccCceEEeccccccccccceeE
Q psy6387 190 IGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 190 ~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~ 224 (483)
..|.+.+......-.+++|++|.|=||...-.++.
T Consensus 82 ~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~ 116 (220)
T PF10503_consen 82 AALVDYVAARYNIDPSRVYVTGLSNGGMMANVLAC 116 (220)
T ss_pred HHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHH
Confidence 34444444433556778999999999987776664
No 93
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=59.22 E-value=0.28 Score=46.24 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=42.5
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCC-ccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQ-SEW 470 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~Dq-P~~ 470 (483)
..+|||.+|..|.+||..-++++.+.|.-.| . +..+++..++||-...++ ...
T Consensus 144 ~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g-------------------------~-~~~~~~~p~~gH~~~~~~~~~~ 197 (213)
T PF00326_consen 144 KPPVLIIHGENDPRVPPSQSLRLYNALRKAG-------------------------K-PVELLIFPGEGHGFGNPENRRD 197 (213)
T ss_dssp GSEEEEEEETTBSSSTTHHHHHHHHHHHHTT-------------------------S-SEEEEEETT-SSSTTSHHHHHH
T ss_pred CCCEEEEccCCCCccCHHHHHHHHHHHHhcC-------------------------C-CEEEEEcCcCCCCCCCchhHHH
Confidence 7899999999999999998888888876222 1 466778889999555332 223
Q ss_pred hhhhhhhcc
Q psy6387 471 AFDLITRFT 479 (483)
Q Consensus 471 a~~mi~~fl 479 (483)
..+.+-+|+
T Consensus 198 ~~~~~~~f~ 206 (213)
T PF00326_consen 198 WYERILDFF 206 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 94
>PLN02454 triacylglycerol lipase
Probab=58.34 E-value=1.5 Score=46.03 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=47.4
Q ss_pred cceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCc
Q psy6387 182 SHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDP 254 (483)
Q Consensus 182 ~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp 254 (483)
..+.+++...++...+.+|..+ ..++|+|+|-||-.+-..|..|.+... ....++++.+..|.|-+..
T Consensus 206 ~S~r~qvl~~V~~l~~~Yp~~~-~sI~vTGHSLGGALAtLaA~di~~~g~----~~~~~~V~~~TFGsPRVGN 273 (414)
T PLN02454 206 LSARSQLLAKIKELLERYKDEK-LSIVLTGHSLGASLATLAAFDIVENGV----SGADIPVTAIVFGSPQVGN 273 (414)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-ceEEEEecCHHHHHHHHHHHHHHHhcc----cccCCceEEEEeCCCcccC
Confidence 3566777888888888777653 259999999999887777766655321 1123567778888877643
No 95
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=57.06 E-value=7.9 Score=38.79 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=42.8
Q ss_pred eeeehhHHHHHHhhhcc--cCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcch
Q psy6387 187 NLYIGLVQFFKIFKEYQ--SNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLN 256 (483)
Q Consensus 187 d~~~fL~~F~~~fPe~~--~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~~ 256 (483)
|.+.+++-..+.-.++. .+++.|+|+|=||+.+-.++....+.. ...+++.++.-+++|...
T Consensus 132 d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~--------~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 132 DAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRG--------LPLPAAQVLISPLLDLTS 195 (312)
T ss_pred HHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcC--------CCCceEEEEEecccCCcc
Confidence 34444444443333343 567999999999999988887665531 245788888889988875
No 96
>COG4099 Predicted peptidase [General function prediction only]
Probab=56.57 E-value=22 Score=35.79 Aligned_cols=32 Identities=13% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCceeeEEEeeccc-ccCCCCC-cEEEEEeCCC
Q psy6387 84 KNHSSALFFWFFPAQ-EKNASEA-PVLVWLQGGP 115 (483)
Q Consensus 84 ~~~~~~lFfwf~ea~-~~p~~~~-Pl~lWlnGGP 115 (483)
++.+..|=|-+|..+ -+|.++- ||+|||+|+-
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky~PLvlfLHgag 201 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKYYPLVLFLHGAG 201 (387)
T ss_pred cccCceeeEEEecccccCCCCccccEEEEEecCC
Confidence 455778888887664 3441333 9999999963
No 97
>PRK11071 esterase YqiA; Provisional
Probab=55.53 E-value=3.9 Score=38.15 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=24.3
Q ss_pred ehhHHHHHHhhhcccCceEEeccccccccccceeE
Q psy6387 190 IGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 190 ~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~ 224 (483)
+++.++.+. +..++++|.|.|.||.++-.+|.
T Consensus 49 ~~l~~l~~~---~~~~~~~lvG~S~Gg~~a~~~a~ 80 (190)
T PRK11071 49 ELLESLVLE---HGGDPLGLVGSSLGGYYATWLSQ 80 (190)
T ss_pred HHHHHHHHH---cCCCCeEEEEECHHHHHHHHHHH
Confidence 455666653 44568999999999998887775
No 98
>PRK11460 putative hydrolase; Provisional
Probab=55.31 E-value=1.5 Score=42.24 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=43.0
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
+.+|++.+|..|.++|....++..+.|+ +.+.+.++.++.++||.+..+.-+.+
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~--------------------------~~g~~~~~~~~~~~gH~i~~~~~~~~ 201 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALI--------------------------SLGGDVTLDIVEDLGHAIDPRLMQFA 201 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHH--------------------------HCCCCeEEEEECCCCCCCCHHHHHHH
Confidence 6799999999999999887766655553 11114556667889999976555555
Q ss_pred hhhhhhcc
Q psy6387 472 FDLITRFT 479 (483)
Q Consensus 472 ~~mi~~fl 479 (483)
.+.|++++
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 55555544
No 99
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=53.37 E-value=2 Score=43.11 Aligned_cols=62 Identities=21% Similarity=0.169 Sum_probs=43.4
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccc--cCCcc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVP--KDQSE 469 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP--~DqP~ 469 (483)
..+|+||+|..|.++|+..+++.++++- +..+.+++|.++.+++|+.. ...|.
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c-------------------------~~G~a~V~~~~~~~~~H~~~~~~~~~~ 273 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWC-------------------------AAGGADVEYVRYPGGGHLGAAFASAPD 273 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHH-------------------------HcCCCCEEEEecCCCChhhhhhcCcHH
Confidence 6899999999999999998877766643 11202677788888999865 45665
Q ss_pred chhhhhhhc
Q psy6387 470 WAFDLITRF 478 (483)
Q Consensus 470 ~a~~mi~~f 478 (483)
+.--|-+||
T Consensus 274 a~~Wl~~rf 282 (290)
T PF03583_consen 274 ALAWLDDRF 282 (290)
T ss_pred HHHHHHHHH
Confidence 444444443
No 100
>PRK11460 putative hydrolase; Provisional
Probab=53.03 E-value=6.7 Score=37.74 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=17.5
Q ss_pred ccCceEEeccccccccccceeE
Q psy6387 203 QSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 203 ~~~~~yi~GESYaG~yvP~lA~ 224 (483)
..+++++.|.|.||..+-.++.
T Consensus 101 ~~~~i~l~GfS~Gg~~al~~a~ 122 (232)
T PRK11460 101 GASATALIGFSQGAIMALEAVK 122 (232)
T ss_pred ChhhEEEEEECHHHHHHHHHHH
Confidence 3457999999999988766553
No 101
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=50.74 E-value=6.2 Score=41.73 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=38.2
Q ss_pred cceEEEeeCCccCceeeeeec-----ccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccc
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHN-----DLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYV 219 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~-----~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yv 219 (483)
.|-|+.+| -.==|-|....+ -.| -+.+|+-.|+..|++.+=..+....+.|+.++|-||||...
T Consensus 59 ~a~~v~lE-HRyYG~S~P~~~~s~~nL~y-Lt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 59 GALVVALE-HRYYGKSQPFGDLSTENLRY-LTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp TEEEEEE---TTSTTB-TTGGGGGSTTTC--SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred CCcEEEee-hhhhcCCCCccccchhhHHh-cCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 35667777 333344432111 112 25677888888888887766666677799999999999643
No 102
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=49.91 E-value=3.6 Score=40.61 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=26.6
Q ss_pred hhhHHhhhcCCccc-ccCCccchhhhhhhccc
Q psy6387 450 NFYEVLVRNAGHMV-PKDQSEWAFDLITRFTH 480 (483)
Q Consensus 450 nltfv~V~~AGHmv-P~DqP~~a~~mi~~fl~ 480 (483)
+.+.+++.+|||.+ ..+.++...+.|.+|+.
T Consensus 242 ~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 242 GIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred CeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 67788999999999 66667999999999984
No 103
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=49.37 E-value=5.3 Score=38.05 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=30.5
Q ss_pred eeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeE
Q psy6387 184 VGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAY 224 (483)
Q Consensus 184 ~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~ 224 (483)
+-.|+.++++.|++.++ ++|||.|+|+|-|+..+-.|-.
T Consensus 76 ay~DV~~AF~~yL~~~n--~GRPfILaGHSQGs~~l~~LL~ 114 (207)
T PF11288_consen 76 AYSDVRAAFDYYLANYN--NGRPFILAGHSQGSMHLLRLLK 114 (207)
T ss_pred hHHHHHHHHHHHHHhcC--CCCCEEEEEeChHHHHHHHHHH
Confidence 34567788899998765 5899999999999987665543
No 104
>COG0400 Predicted esterase [General function prediction only]
Probab=48.09 E-value=8.7 Score=36.62 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=35.1
Q ss_pred eeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcc
Q psy6387 185 GVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPL 255 (483)
Q Consensus 185 a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~ 255 (483)
+..+.+||....+.+ ....+++++.|-|-|+.++-++..+- +-.++|+++=.|..-+.
T Consensus 80 ~~~~~~~l~~~~~~~-gi~~~~ii~~GfSqGA~ial~~~l~~------------~~~~~~ail~~g~~~~~ 137 (207)
T COG0400 80 TEKLAEFLEELAEEY-GIDSSRIILIGFSQGANIALSLGLTL------------PGLFAGAILFSGMLPLE 137 (207)
T ss_pred HHHHHHHHHHHHHHh-CCChhheEEEecChHHHHHHHHHHhC------------chhhccchhcCCcCCCC
Confidence 333444554444432 23357899999999998766655322 12577777777765443
No 105
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=47.83 E-value=3.3 Score=40.88 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=62.0
Q ss_pred CCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeecccccccCc
Q psy6387 103 SEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNES 182 (483)
Q Consensus 103 ~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~ 182 (483)
.+.|.||+++|..+.++.+..+. +. |.. +..+++-+|.| |.|.|..... ...+.+
T Consensus 16 ~~~p~vvliHG~~~~~~~w~~~~---~~-------------L~~------~g~~vi~~dl~-g~G~s~~~~~--~~~~~~ 70 (273)
T PLN02211 16 RQPPHFVLIHGISGGSWCWYKIR---CL-------------MEN------SGYKVTCIDLK-SAGIDQSDAD--SVTTFD 70 (273)
T ss_pred CCCCeEEEECCCCCCcCcHHHHH---HH-------------HHh------CCCEEEEeccc-CCCCCCCCcc--cCCCHH
Confidence 56799999999866555431111 00 211 23688999977 8887632211 112333
Q ss_pred ceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 183 ~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
+.+ +.+.++++... ...+++|.|+||||..+-.++.+.- -.++++++.++..
T Consensus 71 ~~~----~~l~~~i~~l~--~~~~v~lvGhS~GG~v~~~~a~~~p------------~~v~~lv~~~~~~ 122 (273)
T PLN02211 71 EYN----KPLIDFLSSLP--ENEKVILVGHSAGGLSVTQAIHRFP------------KKICLAVYVAATM 122 (273)
T ss_pred HHH----HHHHHHHHhcC--CCCCEEEEEECchHHHHHHHHHhCh------------hheeEEEEecccc
Confidence 333 34555554321 2478999999999997777764321 1366777765543
No 106
>PF03283 PAE: Pectinacetylesterase
Probab=47.27 E-value=34 Score=35.50 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=64.7
Q ss_pred eeeEEEeecccccCCCCCcEEEEEeCCCCcccc----cccccccccccccccc-CCCcc--cccccccccccccceEEEe
Q psy6387 88 SALFFWFFPAQEKNASEAPVLVWLQGGPGASSM----FGLFQEHGPLMLNKTK-KNQTL--PYLDTRKTHWTKNHNVIYI 160 (483)
Q Consensus 88 ~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl----~Glf~E~GP~~v~~~~-~~~~~--~~l~~n~~sW~~~anlLyi 160 (483)
+.-.|++-+... . ..+-+||.|+||=.|-+. .-..+++|-..--++. ...++ ..-..||.=| ..|++||
T Consensus 35 S~~~yy~~~g~g-~-~s~~~li~leGGG~C~~~~tC~~r~~t~~gss~~~~~~~~~~Gils~~~~~Np~f~--~wN~V~v 110 (361)
T PF03283_consen 35 SPPGYYFRPGSG-S-GSNKWLIFLEGGGWCWDAETCAQRSSTNLGSSKNWPKTFAFSGILSNDPAENPDFY--NWNHVFV 110 (361)
T ss_pred CCCcEEEccCCC-C-CCceEEEEeccchhcCChhHHhhhccCccccccchhhhccccccccCCcccCCccc--cccEEEE
Confidence 334455555532 3 567899999999888774 1233344533211110 00011 1133455222 2677888
Q ss_pred eCCccCceeeeeeccccccc---CcceeeeeeehhHHHH-HH-hhhcccCceEEeccccccccccceeEEEec
Q psy6387 161 DNPVGTGFSFVEHNDLYSRN---ESHVGVNLYIGLVQFF-KI-FKEYQSNDFYVTGESYAGKYVPALAYTIHL 228 (483)
Q Consensus 161 DqPvGtGfSy~~~~~~~~~~---~~~~a~d~~~fL~~F~-~~-fPe~~~~~~yi~GESYaG~yvP~lA~~I~~ 228 (483)
=- =+|-||..+....... ..-....+++++.+++ .. +++ ..++.|+|.|=||.-+..-+.+|.+
T Consensus 111 pY--C~Gd~~~G~~~~~~~~~~~l~frG~~i~~avl~~l~~~gl~~--a~~vlltG~SAGG~g~~~~~d~~~~ 179 (361)
T PF03283_consen 111 PY--CDGDSHSGDVEPVDYGGTTLYFRGYRILRAVLDDLLSNGLPN--AKQVLLTGCSAGGLGAILHADYVRD 179 (361)
T ss_pred Ee--cCCccccCcccccccCCceeEeecHHHHHHHHHHHHHhcCcc--cceEEEeccChHHHHHHHHHHHHHH
Confidence 43 3344443322111111 1112223333333333 33 332 3469999999999876665655544
No 107
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=46.47 E-value=5 Score=37.84 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=46.8
Q ss_pred ceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccC-ceEEeccccccccccceeEEEecCCCCC
Q psy6387 155 HNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSN-DFYVTGESYAGKYVPALAYTIHLNNPEQ 233 (483)
Q Consensus 155 anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~-~~yi~GESYaG~yvP~lA~~I~~~n~~~ 233 (483)
.++..|+.| |-+ .+.....+-++.|+...+.++ +.... |++|+|.|+||..+=.+|.++.++.
T Consensus 28 ~~v~~i~~~-~~~-----~~~~~~~si~~la~~y~~~I~-------~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G--- 91 (229)
T PF00975_consen 28 IGVYGIEYP-GRG-----DDEPPPDSIEELASRYAEAIR-------ARQPEGPYVLAGWSFGGILAFEMARQLEEAG--- 91 (229)
T ss_dssp EEEEEECST-TSC-----TTSHEESSHHHHHHHHHHHHH-------HHTSSSSEEEEEETHHHHHHHHHHHHHHHTT---
T ss_pred EEEEEEecC-CCC-----CCCCCCCCHHHHHHHHHHHhh-------hhCCCCCeeehccCccHHHHHHHHHHHHHhh---
Confidence 567778744 444 111123344445544333332 22333 9999999999999888998776643
Q ss_pred CCcccccccceeeecCCCC
Q psy6387 234 GSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 234 ~~~~~~inLkGi~IGNg~~ 252 (483)
...+.|++-++..
T Consensus 92 ------~~v~~l~liD~~~ 104 (229)
T PF00975_consen 92 ------EEVSRLILIDSPP 104 (229)
T ss_dssp -------SESEEEEESCSS
T ss_pred ------hccCceEEecCCC
Confidence 3578888888654
No 108
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=46.37 E-value=3.8 Score=37.56 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.1
Q ss_pred hhHHhhhcCCcccccCCccchhhhhhhcc
Q psy6387 451 FYEVLVRNAGHMVPKDQSEWAFDLITRFT 479 (483)
Q Consensus 451 ltfv~V~~AGHmvP~DqP~~a~~mi~~fl 479 (483)
..++++.++||+...++|+...+.+.+|+
T Consensus 251 ~~~~~~~~~gH~~~~~~p~~~~~~i~~~~ 279 (282)
T COG0596 251 ARLVVIPGAGHFPHLEAPEAFAAALLAFL 279 (282)
T ss_pred ceEEEeCCCCCcchhhcHHHHHHHHHHHH
Confidence 45677899999999999997776666643
No 109
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=45.41 E-value=3.9 Score=40.84 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.7
Q ss_pred ceeEEEEcCeeeEEEecceeecccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLK 416 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~ 416 (483)
++++||.+|+.|.+||....+.+.+
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~ 272 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHK 272 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHH
Confidence 4899999999999998865544433
No 110
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=44.69 E-value=9.6 Score=37.67 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=62.4
Q ss_pred CcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCceeeeeec-----ccccc
Q psy6387 105 APVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHN-----DLYSR 179 (483)
Q Consensus 105 ~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtGfSy~~~~-----~~~~~ 179 (483)
+++++|+-|-||.....--|.+. |..+- +....++=+. - .|+|..... +.-..
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~----------------L~~~l---~~~~~i~~is-h--~Gh~~~~~~~~~~~~~~~~ 59 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSA----------------LYEKL---NPQFEILGIS-H--AGHSTSPSNSKFSPNGRLF 59 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHH----------------HHHhC---CCCCeeEEec-C--CCCcCCcccccccCCCCcc
Confidence 57999999999998764333221 22111 2333333333 2 455543332 11222
Q ss_pred cCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 180 NESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 180 ~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
+.++-.+.-.+||+++....+ -.+.+++|.|+|=|.. ++.+|+++.. ..+.+++++..-=|.+
T Consensus 60 sL~~QI~hk~~~i~~~~~~~~-~~~~~liLiGHSIGay----i~levl~r~~-----~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 60 SLQDQIEHKIDFIKELIPQKN-KPNVKLILIGHSIGAY----IALEVLKRLP-----DLKFRVKKVILLFPTI 122 (266)
T ss_pred CHHHHHHHHHHHHHHHhhhhc-CCCCcEEEEeCcHHHH----HHHHHHHhcc-----ccCCceeEEEEeCCcc
Confidence 444444555566666665432 2567899999999985 4445544322 1234566555555544
No 111
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=43.34 E-value=3.9 Score=41.85 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=41.3
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCc---
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQS--- 468 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP--- 468 (483)
.++||+..|..|.+++...++.+.+.+. + . +.+++++ .+||+.+.+.|
T Consensus 286 ~~Pvliv~G~~D~i~~~~~~~~~~~~~~----------------------~-----~-~~~~~~~-~~gH~~~~~~~~~~ 336 (350)
T TIGR01836 286 KMPILNIYAERDHLVPPDASKALNDLVS----------------------S-----E-DYTELSF-PGGHIGIYVSGKAQ 336 (350)
T ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHcC----------------------C-----C-CeEEEEc-CCCCEEEEECchhH
Confidence 6899999999999999887766655543 0 0 1222222 48999988866
Q ss_pred cchhhhhhhccc
Q psy6387 469 EWAFDLITRFTH 480 (483)
Q Consensus 469 ~~a~~mi~~fl~ 480 (483)
+.+..-|.+|+.
T Consensus 337 ~~v~~~i~~wl~ 348 (350)
T TIGR01836 337 KEVPPAIGKWLQ 348 (350)
T ss_pred hhhhHHHHHHHH
Confidence 556666667764
No 112
>KOG4391|consensus
Probab=43.33 E-value=41 Score=32.49 Aligned_cols=122 Identities=17% Similarity=0.216 Sum_probs=74.0
Q ss_pred eeeEEEeecccccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCccCc
Q psy6387 88 SALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTG 167 (483)
Q Consensus 88 ~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPvGtG 167 (483)
-.|-=|...++ ...|++|.++|--|- .|-+.-+ . +-.==+-..||+-+| =.|-|
T Consensus 65 vtL~a~~~~~E----~S~pTlLyfh~NAGN---mGhr~~i------~------------~~fy~~l~mnv~ivs-YRGYG 118 (300)
T KOG4391|consen 65 VTLDAYLMLSE----SSRPTLLYFHANAGN---MGHRLPI------A------------RVFYVNLKMNVLIVS-YRGYG 118 (300)
T ss_pred eeEeeeeeccc----CCCceEEEEccCCCc---ccchhhH------H------------HHHHHHcCceEEEEE-eeccc
Confidence 34554555443 467999999987553 1222111 0 001112356788888 77888
Q ss_pred eeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeee
Q psy6387 168 FSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAI 247 (483)
Q Consensus 168 fSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~I 247 (483)
-|-+... ++..-.|- ++....+-..|...++.+.+.|-|-||--+-.+|. .|. -.+.++++
T Consensus 119 ~S~Gsps------E~GL~lDs-~avldyl~t~~~~dktkivlfGrSlGGAvai~las----k~~--------~ri~~~iv 179 (300)
T KOG4391|consen 119 KSEGSPS------EEGLKLDS-EAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLAS----KNS--------DRISAIIV 179 (300)
T ss_pred cCCCCcc------ccceeccH-HHHHHHHhcCccCCcceEEEEecccCCeeEEEeec----cch--------hheeeeee
Confidence 8854332 12111221 45556667789999999999999999954444443 332 25889999
Q ss_pred cCCCCCc
Q psy6387 248 GNGLCDP 254 (483)
Q Consensus 248 GNg~~dp 254 (483)
-|-+++=
T Consensus 180 ENTF~SI 186 (300)
T KOG4391|consen 180 ENTFLSI 186 (300)
T ss_pred echhccc
Confidence 9988764
No 113
>KOG3079|consensus
Probab=42.39 E-value=15 Score=34.32 Aligned_cols=16 Identities=31% Similarity=0.929 Sum_probs=13.8
Q ss_pred CCCcEEEEEeCCCCcc
Q psy6387 103 SEAPVLVWLQGGPGAS 118 (483)
Q Consensus 103 ~~~Pl~lWlnGGPG~S 118 (483)
.+.|-|+|.=|||||.
T Consensus 5 ~~~~~IifVlGGPGsg 20 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSG 20 (195)
T ss_pred ccCCCEEEEEcCCCCC
Confidence 4678899999999984
No 114
>COG0400 Predicted esterase [General function prediction only]
Probab=42.25 E-value=3.3 Score=39.45 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.1
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLD 419 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~ 419 (483)
+.+|++-+|..|.+||...+++..+.|.
T Consensus 146 ~~pill~hG~~Dpvvp~~~~~~l~~~l~ 173 (207)
T COG0400 146 GTPILLSHGTEDPVVPLALAEALAEYLT 173 (207)
T ss_pred CCeEEEeccCcCCccCHHHHHHHHHHHH
Confidence 8999999999999999887766555543
No 115
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=41.54 E-value=6.3 Score=38.74 Aligned_cols=97 Identities=22% Similarity=0.130 Sum_probs=60.2
Q ss_pred cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCC
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQ 233 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~ 233 (483)
=..+|.+| ..|+|-|...-... ..+-++|.+ .+.+|+..-|.-. -.+-++|.||+|.....+|. .+
T Consensus 57 GY~vV~~D-~RG~g~S~G~~~~~----~~~e~~D~~-d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~---~~---- 122 (272)
T PF02129_consen 57 GYAVVVQD-VRGTGGSEGEFDPM----SPNEAQDGY-DTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAA---RR---- 122 (272)
T ss_dssp T-EEEEEE--TTSTTS-S-B-TT----SHHHHHHHH-HHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHT---TT----
T ss_pred CCEEEEEC-CcccccCCCccccC----ChhHHHHHH-HHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHh---cC----
Confidence 35788999 99999997654311 333445554 4557787666543 46999999999998777774 11
Q ss_pred CCcccccccceeeecCCCCCcchhhhhhhhhhhhccccCcc
Q psy6387 234 GSEKDKINLKGIAIGNGLCDPLNMMVYSSYLYQLGLVDDNG 274 (483)
Q Consensus 234 ~~~~~~inLkGi~IGNg~~dp~~q~~~~~~~y~~glid~~~ 274 (483)
.-.||.|+..-+..|.... .+|.-|++....
T Consensus 123 -----~p~LkAi~p~~~~~d~~~~-----~~~~gG~~~~~~ 153 (272)
T PF02129_consen 123 -----PPHLKAIVPQSGWSDLYRD-----SIYPGGAFRLGF 153 (272)
T ss_dssp ------TTEEEEEEESE-SBTCCT-----SSEETTEEBCCH
T ss_pred -----CCCceEEEecccCCccccc-----chhcCCcccccc
Confidence 1359999998887766442 344556555543
No 116
>KOG2281|consensus
Probab=41.07 E-value=28 Score=38.59 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=63.4
Q ss_pred CCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccc----------eEEEeeCCccC---c
Q psy6387 101 NASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNH----------NVIYIDNPVGT---G 167 (483)
Q Consensus 101 p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~a----------nlLyiDqPvGt---G 167 (483)
|-++-|++|..-||||. . ++.|.+.|.+.. =|++||+ .|+ |
T Consensus 638 pgkkYptvl~VYGGP~V-------------------Q------lVnnsfkgi~ylR~~~LaslGy~Vv~IDn-RGS~hRG 691 (867)
T KOG2281|consen 638 PGKKYPTVLNVYGGPGV-------------------Q------LVNNSFKGIQYLRFCRLASLGYVVVFIDN-RGSAHRG 691 (867)
T ss_pred CCCCCceEEEEcCCCce-------------------E------EeeccccceehhhhhhhhhcceEEEEEcC-CCccccc
Confidence 43568999999999995 3 788888887742 3588993 332 1
Q ss_pred eeeeeecccccccCcc-eeeeeeehhHHHHHHhhhccc-CceEEeccccccccccceeEEEecCCCCCCCccccccccee
Q psy6387 168 FSFVEHNDLYSRNESH-VGVNLYIGLVQFFKIFKEYQS-NDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGI 245 (483)
Q Consensus 168 fSy~~~~~~~~~~~~~-~a~d~~~fL~~F~~~fPe~~~-~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi 245 (483)
.-|-.. +-...-+ -++|-.+.||-.-++.- |.. ..+-|-|.||||. ++...+.+-+ +| +|--
T Consensus 692 lkFE~~---ik~kmGqVE~eDQVeglq~Laeq~g-fidmdrV~vhGWSYGGY----LSlm~L~~~P-------~I-frvA 755 (867)
T KOG2281|consen 692 LKFESH---IKKKMGQVEVEDQVEGLQMLAEQTG-FIDMDRVGVHGWSYGGY----LSLMGLAQYP-------NI-FRVA 755 (867)
T ss_pred hhhHHH---HhhccCeeeehhhHHHHHHHHHhcC-cccchheeEeccccccH----HHHHHhhcCc-------ce-eeEE
Confidence 111100 1111111 12333366655444422 322 3588899999994 3333333222 11 5555
Q ss_pred eecCCCCCcch
Q psy6387 246 AIGNGLCDPLN 256 (483)
Q Consensus 246 ~IGNg~~dp~~ 256 (483)
+-|.+.++...
T Consensus 756 IAGapVT~W~~ 766 (867)
T KOG2281|consen 756 IAGAPVTDWRL 766 (867)
T ss_pred eccCcceeeee
Confidence 66888877654
No 117
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=40.89 E-value=3.4 Score=35.87 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=40.3
Q ss_pred eeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 185 GVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 185 a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
.+.+.+.|++..+.+| +..+.|+|+|=||-.+-.++..+.++.. ....+++-+.-|.|-+
T Consensus 47 ~~~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~l~~~~~-----~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP---DYSIVITGHSLGGALASLAAADLASHGP-----SSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST---TSEEEEEEETHHHHHHHHHHHHHHHCTT-----TSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc---CccchhhccchHHHHHHHHHHhhhhccc-----ccccceeeeecCCccc
Confidence 3344455555555444 5789999999999999999988877543 2246777888887766
No 118
>KOG1454|consensus
Probab=39.62 E-value=37 Score=34.64 Aligned_cols=66 Identities=23% Similarity=0.141 Sum_probs=40.2
Q ss_pred cceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEec
Q psy6387 154 NHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHL 228 (483)
Q Consensus 154 ~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~ 228 (483)
..-++=||=| |=|+| +..+.+ ..=.+.+..+.++.|+. ++...+++|.|+||||..+=.+|...-+
T Consensus 86 ~~~v~aiDl~-G~g~~-s~~~~~----~~y~~~~~v~~i~~~~~---~~~~~~~~lvghS~Gg~va~~~Aa~~P~ 151 (326)
T KOG1454|consen 86 GLRVLAIDLP-GHGYS-SPLPRG----PLYTLRELVELIRRFVK---EVFVEPVSLVGHSLGGIVALKAAAYYPE 151 (326)
T ss_pred ceEEEEEecC-CCCcC-CCCCCC----CceehhHHHHHHHHHHH---hhcCcceEEEEeCcHHHHHHHHHHhCcc
Confidence 4557788955 66643 222111 11223333344555554 6777889999999999988777766543
No 119
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=39.40 E-value=9.3 Score=36.11 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=33.3
Q ss_pred eehhHHHHHHhhh--cccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcc
Q psy6387 189 YIGLVQFFKIFKE--YQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPL 255 (483)
Q Consensus 189 ~~fL~~F~~~fPe--~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~ 255 (483)
.+.|.+|++.-.+ ...++++|.|-|-||...-.++.+- +-.|.|++.-+|++-+.
T Consensus 87 ~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~------------p~~~~gvv~lsG~~~~~ 143 (216)
T PF02230_consen 87 AERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRY------------PEPLAGVVALSGYLPPE 143 (216)
T ss_dssp HHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCT------------SSTSSEEEEES---TTG
T ss_pred HHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHc------------CcCcCEEEEeecccccc
Confidence 3455566543222 4567899999999998766666321 12688999999987543
No 120
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=38.82 E-value=20 Score=37.51 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=29.9
Q ss_pred ceeeeeeehhHHHHHHhhhccc-CceEEecccccc
Q psy6387 183 HVGVNLYIGLVQFFKIFKEYQS-NDFYVTGESYAG 216 (483)
Q Consensus 183 ~~a~d~~~fL~~F~~~fPe~~~-~~~yi~GESYaG 216 (483)
-.|.|...+|..-.+.||.... .|....|.||||
T Consensus 161 MqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~ 195 (403)
T PF11144_consen 161 MQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGG 195 (403)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHH
Confidence 3688888999999999999986 788999999998
No 121
>PLN02571 triacylglycerol lipase
Probab=35.84 E-value=7.1 Score=41.10 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=45.8
Q ss_pred ceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCC--CcccccccceeeecCCCCC
Q psy6387 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQG--SEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 183 ~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~--~~~~~inLkGi~IGNg~~d 253 (483)
.+.+++...|+.+.+.+|.. ...++|+|+|-||-.+-..|..|....-... .....+++..+..|.|-+-
T Consensus 205 Sar~qvl~eV~~L~~~y~~e-~~sI~VTGHSLGGALAtLaA~dl~~~g~n~~~~~~~~~~~V~v~TFGsPRVG 276 (413)
T PLN02571 205 SARDQVLNEVGRLVEKYKDE-EISITICGHSLGAALATLNAVDIVANGFNRSKSRPNKSCPVTAFVFASPRVG 276 (413)
T ss_pred hHHHHHHHHHHHHHHhcCcc-cccEEEeccchHHHHHHHHHHHHHHhcccccccccccCcceEEEEeCCCCcc
Confidence 45567788888888887764 3469999999999888777776654211000 0112355667777777664
No 122
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=34.59 E-value=6.9 Score=42.74 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=45.8
Q ss_pred ceEEEeeCCccCceeeeeecccccccCccee-eeeeehhHHHHHHhhhcccCceEEeccccccccccc-eeEEEecCCCC
Q psy6387 155 HNVIYIDNPVGTGFSFVEHNDLYSRNESHVG-VNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPA-LAYTIHLNNPE 232 (483)
Q Consensus 155 anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a-~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~-lA~~I~~~n~~ 232 (483)
..++=||- .|-|.|.... +.++-+ +.+.++|..+.+ .....++++.|.|-||..+-. ++.......
T Consensus 221 f~V~~iDw-rgpg~s~~~~------~~ddY~~~~i~~al~~v~~---~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~-- 288 (532)
T TIGR01838 221 HTVFVISW-RNPDASQADK------TFDDYIRDGVIAALEVVEA---ITGEKQVNCVGYCIGGTLLSTALAYLAARGD-- 288 (532)
T ss_pred cEEEEEEC-CCCCcccccC------ChhhhHHHHHHHHHHHHHH---hcCCCCeEEEEECcCcHHHHHHHHHHHHhCC--
Confidence 56777884 5777663211 122222 334455555443 235678999999999987543 221111110
Q ss_pred CCCcccccccceeeecCCCCCcc
Q psy6387 233 QGSEKDKINLKGIAIGNGLCDPL 255 (483)
Q Consensus 233 ~~~~~~~inLkGi~IGNg~~dp~ 255 (483)
.-.++++.+-+..+|..
T Consensus 289 ------~~rv~slvll~t~~Df~ 305 (532)
T TIGR01838 289 ------DKRIKSATFFTTLLDFS 305 (532)
T ss_pred ------CCccceEEEEecCcCCC
Confidence 11378877777777654
No 123
>KOG2183|consensus
Probab=34.28 E-value=18 Score=38.04 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=38.8
Q ss_pred cceEEEee-------CCccCceeeeeecc-cccccCcceeeeeeehhHHHHHHhhhcccCceEEecccccccccc
Q psy6387 154 NHNVIYID-------NPVGTGFSFVEHND-LYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVP 220 (483)
Q Consensus 154 ~anlLyiD-------qPvGtGfSy~~~~~-~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP 220 (483)
.|-|+|+| +|-|.- ||.+... +|-+++ |+=.|+ ..|..++++-+.=+..|+...|-||||+...
T Consensus 111 ~AllVFaEHRyYGeS~PFG~~-s~k~~~hlgyLtse-QALADf-A~ll~~lK~~~~a~~~pvIafGGSYGGMLaA 182 (492)
T KOG2183|consen 111 KALLVFAEHRYYGESLPFGSQ-SYKDARHLGYLTSE-QALADF-AELLTFLKRDLSAEASPVIAFGGSYGGMLAA 182 (492)
T ss_pred CceEEEeehhccccCCCCcch-hccChhhhccccHH-HHHHHH-HHHHHHHhhccccccCcEEEecCchhhHHHH
Confidence 46678887 487776 6554322 344443 333333 4555666554334566899999999996543
No 124
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=33.51 E-value=5.9 Score=40.58 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=45.1
Q ss_pred ccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEec
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHL 228 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~ 228 (483)
...|||-||.-.++.-.|.. .+.+...+++.+-++|+.....+ .+...++||.|+|-|+|.+=.++.++-.
T Consensus 103 ~d~NVI~VDWs~~a~~~Y~~----a~~n~~~vg~~la~~l~~L~~~~-g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 103 GDYNVIVVDWSRGASNNYPQ----AVANTRLVGRQLAKFLSFLINNF-GVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp S-EEEEEEE-HHHHSS-HHH----HHHHHHHHHHHHHHHHHHHHHHH----GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred CCceEEEEcchhhccccccc----hhhhHHHHHHHHHHHHHHHHhhc-CCChhHEEEEeeccchhhhhhhhhhccC
Confidence 47899999988777555432 23345667776666666665332 3456789999999999877666665543
No 125
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=32.62 E-value=25 Score=23.81 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=6.9
Q ss_pred CCcEEEEEeCCCC
Q psy6387 104 EAPVLVWLQGGPG 116 (483)
Q Consensus 104 ~~Pl~lWlnGGPG 116 (483)
..--.||++|-||
T Consensus 23 ~~gRTiWFqGdPG 35 (39)
T PF09292_consen 23 RNGRTIWFQGDPG 35 (39)
T ss_dssp TTS-EEEESS---
T ss_pred cCCCEEEeeCCCC
Confidence 3455799999988
No 126
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=32.10 E-value=84 Score=21.47 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=13.9
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCC
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGP 115 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGP 115 (483)
-.+-+|||-.+.... ....--+|+.+||
T Consensus 10 ~~NrYwwf~~s~~~~-~~~~~~~~v~~~~ 37 (38)
T PF15613_consen 10 YGNRYWWFSSSSSNS-QYYNGGRFVEQGP 37 (38)
T ss_pred CCceEEEEecccccC-CCCCceEEEEeCC
Confidence 456788884444332 2333344444444
No 127
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=31.81 E-value=20 Score=33.60 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=33.9
Q ss_pred hcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcchhhh
Q psy6387 201 EYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLNMMV 259 (483)
Q Consensus 201 e~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~~q~~ 259 (483)
++....+.|.|-|-||.|+-.+|.+. +++. ++.||.+.|...+.
T Consensus 55 ~~~~~~~~liGSSlGG~~A~~La~~~--------------~~~a-vLiNPav~p~~~l~ 98 (187)
T PF05728_consen 55 ELKPENVVLIGSSLGGFYATYLAERY--------------GLPA-VLINPAVRPYELLQ 98 (187)
T ss_pred hCCCCCeEEEEEChHHHHHHHHHHHh--------------CCCE-EEEcCCCCHHHHHH
Confidence 45556699999999999998887533 4555 67799999977655
No 128
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=31.26 E-value=12 Score=37.76 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=45.7
Q ss_pred ceeEEEEcCeeeEEEec-ceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCc--
Q psy6387 392 SYKVLFYNGQLDIIVAY-PLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQS-- 468 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~-~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP-- 468 (483)
.++|||.+|..|.++.+ .+..++.+++. .. +.+.+.+.||-|.+-.+.+
T Consensus 228 ~~PvLll~g~~D~vv~~~~~~~~~~~~~~---------------------------~~-~~~~~~~~g~~He~~~E~~~~ 279 (298)
T COG2267 228 ALPVLLLQGGDDRVVDNVEGLARFFERAG---------------------------SP-DKELKVIPGAYHELLNEPDRA 279 (298)
T ss_pred cCCEEEEecCCCccccCcHHHHHHHHhcC---------------------------CC-CceEEecCCcchhhhcCcchH
Confidence 79999999999999984 55555544433 12 3456788889999988765
Q ss_pred -cchhhhhhhcccC
Q psy6387 469 -EWAFDLITRFTHG 481 (483)
Q Consensus 469 -~~a~~mi~~fl~~ 481 (483)
+.+++.|..|+..
T Consensus 280 r~~~~~~~~~~l~~ 293 (298)
T COG2267 280 REEVLKDILAWLAE 293 (298)
T ss_pred HHHHHHHHHHHHHh
Confidence 4778888888754
No 129
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=31.11 E-value=48 Score=32.35 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=38.2
Q ss_pred ceEEEeeCCccCceeeeeecccccccCcc-eeeeeeehhHHHHHHhhhcccCceEEecccccccccccee
Q psy6387 155 HNVIYIDNPVGTGFSFVEHNDLYSRNESH-VGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALA 223 (483)
Q Consensus 155 anlLyiDqPvGtGfSy~~~~~~~~~~~~~-~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA 223 (483)
+.||-.| =.|+|-|-....++....-.+ +..|+-.+|.. .+. .....|.|..|+||||+-.=.++
T Consensus 58 f~Vlt~d-yRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~-~~~--~~~~~P~y~vgHS~GGqa~gL~~ 123 (281)
T COG4757 58 FEVLTFD-YRGIGQSRPASLSGSQWRYLDWARLDFPAALAA-LKK--ALPGHPLYFVGHSFGGQALGLLG 123 (281)
T ss_pred ceEEEEe-cccccCCCccccccCccchhhhhhcchHHHHHH-HHh--hCCCCceEEeeccccceeecccc
Confidence 4667777 678888865544433333233 33444434433 322 23468999999999998544333
No 130
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.63 E-value=11 Score=35.40 Aligned_cols=68 Identities=7% Similarity=0.087 Sum_probs=50.5
Q ss_pred ccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcchh
Q psy6387 179 RNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLNM 257 (483)
Q Consensus 179 ~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~~q 257 (483)
++-+++|.|+-+.++.+.+ +.+.+.+.+.|-|+|.--+|.+..++-. ..+=.++++++-.+-.....+
T Consensus 45 rtP~~~a~Dl~~~i~~y~~---~w~~~~vvLiGYSFGADvlP~~~nrLp~--------~~r~~v~~v~Ll~p~~~~dFe 112 (192)
T PF06057_consen 45 RTPEQTAADLARIIRHYRA---RWGRKRVVLIGYSFGADVLPFIYNRLPA--------ALRARVAQVVLLSPSTTADFE 112 (192)
T ss_pred CCHHHHHHHHHHHHHHHHH---HhCCceEEEEeecCCchhHHHHHhhCCH--------HHHhheeEEEEeccCCcceEE
Confidence 3557889999888887777 4678899999999999999999988754 333457777776655444433
No 131
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=30.40 E-value=25 Score=36.04 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=39.6
Q ss_pred ccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhh-hcccCceEEeccccccccc
Q psy6387 153 KNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFK-EYQSNDFYVTGESYAGKYV 219 (483)
Q Consensus 153 ~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fP-e~~~~~~yi~GESYaG~yv 219 (483)
..+|+|..- ..|||+|-+ .++ -++.+++ ++++.+++...+ .-+.+++.+-|.|-||--.
T Consensus 170 ~~aNvl~fN-YpGVg~S~G-----~~s-~~dLv~~-~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vq 229 (365)
T PF05677_consen 170 LGANVLVFN-YPGVGSSTG-----PPS-RKDLVKD-YQACVRYLRDEEQGPKAKNIILYGHSLGGGVQ 229 (365)
T ss_pred cCCcEEEEC-CCccccCCC-----CCC-HHHHHHH-HHHHHHHHHhcccCCChheEEEeeccccHHHH
Confidence 357888887 669999943 222 2333333 367778876533 2456889999999999653
No 132
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=29.93 E-value=9.5 Score=42.53 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=44.1
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
..++||.+|..|..|+..-++++.+.|+-.|. +..++++.+.||-.+. |+..
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~--------------------------~~~~~~~p~e~H~~~~--~~~~ 602 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGK--------------------------PVELVVFPDEGHGFSR--PENR 602 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCc--------------------------eEEEEEeCCCCcCCCC--chhH
Confidence 57999999999999999988888888863332 4456777889998887 5555
Q ss_pred hhhhhhc
Q psy6387 472 FDLITRF 478 (483)
Q Consensus 472 ~~mi~~f 478 (483)
.++++++
T Consensus 603 ~~~~~~~ 609 (620)
T COG1506 603 VKVLKEI 609 (620)
T ss_pred HHHHHHH
Confidence 4444443
No 133
>PF07389 DUF1500: Protein of unknown function (DUF1500); InterPro: IPR009974 This family consists of several Orthopoxvirus specific proteins, which include Vaccinia virus, B6 protein, they are around 100 residues in length. The function of this family is unknown.
Probab=29.84 E-value=26 Score=28.43 Aligned_cols=29 Identities=31% Similarity=0.490 Sum_probs=24.5
Q ss_pred eeeeeehhHHHHHHhhhcccCceEEeccccc
Q psy6387 185 GVNLYIGLVQFFKIFKEYQSNDFYVTGESYA 215 (483)
Q Consensus 185 a~d~~~fL~~F~~~fPe~~~~~~yi~GESYa 215 (483)
--|+|++.+.|+-. .|-.+.|.+-|+||+
T Consensus 6 DvdIYDAvRaflLr--~Y~~KrfIV~g~S~~ 34 (100)
T PF07389_consen 6 DVDIYDAVRAFLLR--HYYDKRFIVYGRSNA 34 (100)
T ss_pred chhHHHHHHHHHHH--HHccceEEEecchHH
Confidence 34788999999987 577889999999994
No 134
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=29.13 E-value=13 Score=42.55 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=55.5
Q ss_pred cccccccccceEEEeeCCccCceeeeeecccccccCcceeeeeeehhHHHHHHhh--------------hcccCceEEec
Q psy6387 146 TRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFK--------------EYQSNDFYVTG 211 (483)
Q Consensus 146 ~n~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fP--------------e~~~~~~yi~G 211 (483)
.+.+=-.+-.+++++| ..|+|-|-+.-.. +. .+-.+|. ..+.+|+.... ...+-.+-++|
T Consensus 271 ~~~~~~~rGYaVV~~D-~RGtg~SeG~~~~-~~---~~E~~D~-~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G 344 (767)
T PRK05371 271 LNDYFLPRGFAVVYVS-GIGTRGSDGCPTT-GD---YQEIESM-KAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTG 344 (767)
T ss_pred HHHHHHhCCeEEEEEc-CCCCCCCCCcCcc-CC---HHHHHHH-HHHHHHHhhCCccccccccccccccCCCCCeeEEEE
Confidence 3344344568999999 8899998654321 11 2223343 33445775321 12245799999
Q ss_pred cccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCc
Q psy6387 212 ESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDP 254 (483)
Q Consensus 212 ESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp 254 (483)
.||+|...-.+|..- .-.||.|+-..|+.|.
T Consensus 345 ~SY~G~~~~~aAa~~------------pp~LkAIVp~a~is~~ 375 (767)
T PRK05371 345 KSYLGTLPNAVATTG------------VEGLETIIPEAAISSW 375 (767)
T ss_pred EcHHHHHHHHHHhhC------------CCcceEEEeeCCCCcH
Confidence 999997766555321 1258888888777764
No 135
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=28.60 E-value=4.8 Score=34.58 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=20.7
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccc
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLD 419 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~ 419 (483)
.++|++..|..|.+++....+++.+.++
T Consensus 104 ~~pv~~i~g~~D~~~~~~~~~~~~~~~~ 131 (145)
T PF12695_consen 104 RIPVLFIHGENDPLVPPEQVRRLYEALP 131 (145)
T ss_dssp TSEEEEEEETT-SSSHHHHHHHHHHHHC
T ss_pred CCcEEEEEECCCCcCCHHHHHHHHHHcC
Confidence 6899999999999998776666555543
No 136
>COG0627 Predicted esterase [General function prediction only]
Probab=27.76 E-value=96 Score=31.57 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=60.8
Q ss_pred CCcEEEEEeCCCCccccccccccccccccccccCCCcccccccc-cccccccceEEEeeCCccCceeeeeecccccccCc
Q psy6387 104 EAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTR-KTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNES 182 (483)
Q Consensus 104 ~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n-~~sW~~~anlLyiDqPvGtGfSy~~~~~~~~~~~~ 182 (483)
++--|+|+.+|..|.. =.+...++++-..+... . .+.-+ -.-|....++-=|+ |+|.|.|+-.+...-.....
T Consensus 52 ~~ipV~~~l~G~t~~~--~~~~~~~g~~~~a~~~g--~-~~~~p~t~~~~~~~~~~vv~-p~G~~~sfY~d~~~~~~~~~ 125 (316)
T COG0627 52 RDIPVLYLLSGLTCNE--PNVYLLDGLRRQADESG--W-AVVTPDTSPRGAGVNISVVM-PLGGGASFYSDWTQPPWASG 125 (316)
T ss_pred CCCCEEEEeCCCCCCC--CceEeccchhhhhhhcC--e-EEecCCCCcccCCCCccccc-cCCCccceecccccCccccC
Confidence 4455667777888885 23445555543333221 0 01111 22244555555566 79999997544211110111
Q ss_pred ceeeeeeehhH-----HHHHHhhhccc-CceEEeccccccccccceeEE
Q psy6387 183 HVGVNLYIGLV-----QFFKIFKEYQS-NDFYVTGESYAGKYVPALAYT 225 (483)
Q Consensus 183 ~~a~d~~~fL~-----~F~~~fPe~~~-~~~yi~GESYaG~yvP~lA~~ 225 (483)
..+++.||. .+.+.||--++ ..--|+|.|-||+=+-.+|.+
T Consensus 126 --~~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~ 172 (316)
T COG0627 126 --PYQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALK 172 (316)
T ss_pred --ccchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhh
Confidence 356666665 34455553321 257899999999866555543
No 137
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=26.70 E-value=1.1e+02 Score=31.21 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=68.4
Q ss_pred ceeeEEEeecccccCCCCCcEEEEEeCCCCccccc--------cccccc-cccccccccCCCcccccccccccccccceE
Q psy6387 87 SSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMF--------GLFQEH-GPLMLNKTKKNQTLPYLDTRKTHWTKNHNV 157 (483)
Q Consensus 87 ~~~lFfwf~ea~~~p~~~~Pl~lWlnGGPG~SSl~--------Glf~E~-GP~~v~~~~~~~~~~~l~~n~~sW~~~anl 157 (483)
+..++|.-+...+ . ..+|.||.++|=.|.+... |.+... ||-+ .. -.+...|
T Consensus 15 ~~~~~y~~~g~~~-~-~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~-------------~l----~~~~~~v 75 (351)
T TIGR01392 15 DVRVAYETYGTLN-A-ERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGR-------------AI----DTDRYFV 75 (351)
T ss_pred CceEEEEeccccC-C-CCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCC-------------Cc----CCCceEE
Confidence 4568887664422 2 3457899999877754321 111111 1110 00 0245689
Q ss_pred EEeeCCcc--Cceeeeee--ccc--cccc-CcceeeeeeehhHHHHHHhhhcccCc-eEEeccccccccccceeEEEecC
Q psy6387 158 IYIDNPVG--TGFSFVEH--NDL--YSRN-ESHVGVNLYIGLVQFFKIFKEYQSND-FYVTGESYAGKYVPALAYTIHLN 229 (483)
Q Consensus 158 LyiDqPvG--tGfSy~~~--~~~--~~~~-~~~~a~d~~~fL~~F~~~fPe~~~~~-~yi~GESYaG~yvP~lA~~I~~~ 229 (483)
|=+|.| | -|-|-..+ +.+ +..+ ..-..+++.+.+..+.+ ++.-.+ ++|.|+|.||..+-.+|.+-
T Consensus 76 i~~D~~-G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~l~G~S~Gg~ia~~~a~~~--- 148 (351)
T TIGR01392 76 VCSNVL-GGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLD---HLGIEQIAAVVGGSMGGMQALEWAIDY--- 148 (351)
T ss_pred EEecCC-CCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHH---HcCCCCceEEEEECHHHHHHHHHHHHC---
Confidence 999977 5 44441111 001 1000 01122334444445544 344455 99999999998777776432
Q ss_pred CCCCCCcccccccceeeecCCCC
Q psy6387 230 NPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 230 n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
+-.++++++.++..
T Consensus 149 ---------p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 149 ---------PERVRAIVVLATSA 162 (351)
T ss_pred ---------hHhhheEEEEccCC
Confidence 12478888877654
No 138
>PRK13604 luxD acyl transferase; Provisional
Probab=26.70 E-value=14 Score=37.50 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=70.1
Q ss_pred CceeeEEEeeccc-ccCCCCCcEEEEEeCCCCccccccccccccccccccccCCCcccccccccccccccceEEEeeCCc
Q psy6387 86 HSSALFFWFFPAQ-EKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPV 164 (483)
Q Consensus 86 ~~~~lFfwf~ea~-~~p~~~~Pl~lWlnGGPG~SSl~Glf~E~GP~~v~~~~~~~~~~~l~~n~~sW~~~anlLyiDqPv 164 (483)
.+..|.=|+.+.+ +++ +..|++|-.. |.|+.... + ...-.+=+.+-.++|-.|.=-
T Consensus 18 dG~~L~Gwl~~P~~~~~-~~~~~vIi~H-Gf~~~~~~--------~-------------~~~A~~La~~G~~vLrfD~rg 74 (307)
T PRK13604 18 NGQSIRVWETLPKENSP-KKNNTILIAS-GFARRMDH--------F-------------AGLAEYLSSNGFHVIRYDSLH 74 (307)
T ss_pred CCCEEEEEEEcCcccCC-CCCCEEEEeC-CCCCChHH--------H-------------HHHHHHHHHCCCEEEEecCCC
Confidence 4667888887775 334 5667777654 45554210 1 222233345667889999555
Q ss_pred cCceeeeeecccccccCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccce
Q psy6387 165 GTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKG 244 (483)
Q Consensus 165 GtGfSy~~~~~~~~~~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkG 244 (483)
|.|-|-.+-. ....+. ...|+ .+..+|++.. ...++.|.|+|-||.-+...|. ..++++
T Consensus 75 ~~GeS~G~~~-~~t~s~--g~~Dl-~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~--------------~~~v~~ 133 (307)
T PRK13604 75 HVGLSSGTID-EFTMSI--GKNSL-LTVVDWLNTR---GINNLGLIAASLSARIAYEVIN--------------EIDLSF 133 (307)
T ss_pred CCCCCCCccc-cCcccc--cHHHH-HHHHHHHHhc---CCCceEEEEECHHHHHHHHHhc--------------CCCCCE
Confidence 5687722111 111111 23444 3444555542 2357999999999976433332 124788
Q ss_pred eeecCCCCC
Q psy6387 245 IAIGNGLCD 253 (483)
Q Consensus 245 i~IGNg~~d 253 (483)
+++..|+.+
T Consensus 134 lI~~sp~~~ 142 (307)
T PRK13604 134 LITAVGVVN 142 (307)
T ss_pred EEEcCCccc
Confidence 888888775
No 139
>PLN02753 triacylglycerol lipase
Probab=26.36 E-value=12 Score=40.57 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=46.2
Q ss_pred cceeeeeeehhHHHHHHhhh--cccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCC
Q psy6387 182 SHVGVNLYIGLVQFFKIFKE--YQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 182 ~~~a~d~~~fL~~F~~~fPe--~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~d 253 (483)
..+.+++.+.++...+.+|. .....++|+|+|-||-.+-..|..|.+..-........+++.-+..|.|-+.
T Consensus 287 ~S~reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~Dla~~g~n~~~~~~~~pV~vyTFGsPRVG 360 (531)
T PLN02753 287 FSAREQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYDIAEMGLNRSKKGKVIPVTVLTYGGPRVG 360 (531)
T ss_pred hhHHHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHHHHHhcccccccCccCceEEEEeCCCCcc
Confidence 34667788888888887763 2345799999999998887777666542110001122355666777776664
No 140
>PLN02719 triacylglycerol lipase
Probab=26.32 E-value=12 Score=40.42 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=45.5
Q ss_pred ceeeeeeehhHHHHHHhhhcc--cCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCC
Q psy6387 183 HVGVNLYIGLVQFFKIFKEYQ--SNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCD 253 (483)
Q Consensus 183 ~~a~d~~~fL~~F~~~fPe~~--~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~d 253 (483)
.+.+++...|+...+.+|... ...++|+|+|-||-.+-..|..|.+..-+.......+++.-+.-|.|-+.
T Consensus 274 SaReQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~Dl~~~gln~~~~~~~~pVtvyTFGsPRVG 346 (518)
T PLN02719 274 SAREQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYDVAEMGLNRTRKGKVIPVTAFTYGGPRVG 346 (518)
T ss_pred hHHHHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHHHHHhcccccccccccceEEEEecCCCcc
Confidence 456677788888888887652 34699999999998887777777553110001112244556666776553
No 141
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=26.05 E-value=47 Score=33.79 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHhhhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 194 QFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 194 ~F~~~fPe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
.|+...|+.-.+.+.++|+|-||...-.+|. + + -.++.++...|++
T Consensus 164 d~l~slpevD~~rI~v~G~SqGG~lal~~aa-L-d-----------~rv~~~~~~vP~l 209 (320)
T PF05448_consen 164 DFLRSLPEVDGKRIGVTGGSQGGGLALAAAA-L-D-----------PRVKAAAADVPFL 209 (320)
T ss_dssp HHHHTSTTEEEEEEEEEEETHHHHHHHHHHH-H-S-----------ST-SEEEEESESS
T ss_pred HHHHhCCCcCcceEEEEeecCchHHHHHHHH-h-C-----------ccccEEEecCCCc
Confidence 4566789998999999999999976655553 1 1 1267777776654
No 142
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=25.68 E-value=12 Score=35.57 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=31.7
Q ss_pred ccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCC
Q psy6387 203 QSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLC 252 (483)
Q Consensus 203 ~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~ 252 (483)
.+.+++++|+|-||-.+-.+|..+.++. ...+++.+..|.|-+
T Consensus 126 p~~~i~vtGHSLGGaiA~l~a~~l~~~~-------~~~~i~~~tFg~P~v 168 (229)
T cd00519 126 PDYKIIVTGHSLGGALASLLALDLRLRG-------PGSDVTVYTFGQPRV 168 (229)
T ss_pred CCceEEEEccCHHHHHHHHHHHHHHhhC-------CCCceEEEEeCCCCC
Confidence 3567999999999988877777665432 134578888888766
No 143
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=25.16 E-value=3.5 Score=39.04 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=36.3
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
+.+|++.+|+.|.++|....+...+.|+ ..+.++++.+..|.||-++. ..
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~--------------------------~~~~~v~~~~~~g~gH~i~~----~~ 204 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLK--------------------------AAGANVEFHEYPGGGHEISP----EE 204 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHH--------------------------CTT-GEEEEEETT-SSS--H----HH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHH--------------------------hcCCCEEEEEcCCCCCCCCH----HH
Confidence 6799999999999999875554443332 22225777778889999863 45
Q ss_pred hhhhhhccc
Q psy6387 472 FDLITRFTH 480 (483)
Q Consensus 472 ~~mi~~fl~ 480 (483)
+..+.+||.
T Consensus 205 ~~~~~~~l~ 213 (216)
T PF02230_consen 205 LRDLREFLE 213 (216)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555666654
No 144
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=24.88 E-value=14 Score=35.75 Aligned_cols=70 Identities=7% Similarity=-0.007 Sum_probs=45.9
Q ss_pred eeeeeeehhHHHHHHhhhc-ccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCcch
Q psy6387 184 VGVNLYIGLVQFFKIFKEY-QSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLN 256 (483)
Q Consensus 184 ~a~d~~~fL~~F~~~fPe~-~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp~~ 256 (483)
.|..--..|.+|+...-+. ...+++|.++|-|++-+-..-..+..... .....-.|..|++-+|-+|...
T Consensus 71 ~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~---~~~~~~~~~~viL~ApDid~d~ 141 (233)
T PF05990_consen 71 SARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGE---RPDVKARFDNVILAAPDIDNDV 141 (233)
T ss_pred hHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhccc---chhhHhhhheEEEECCCCCHHH
Confidence 4444455666666654444 56789999999999877665555544322 1122347899999999888754
No 145
>PRK06762 hypothetical protein; Provisional
Probab=24.79 E-value=47 Score=29.69 Aligned_cols=13 Identities=23% Similarity=0.647 Sum_probs=11.7
Q ss_pred cEEEEEeCCCCcc
Q psy6387 106 PVLVWLQGGPGAS 118 (483)
Q Consensus 106 Pl~lWlnGGPG~S 118 (483)
|.++|+.|.|||.
T Consensus 2 ~~li~i~G~~GsG 14 (166)
T PRK06762 2 TTLIIIRGNSGSG 14 (166)
T ss_pred CeEEEEECCCCCC
Confidence 7899999999984
No 146
>KOG2182|consensus
Probab=24.52 E-value=50 Score=35.50 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=30.2
Q ss_pred cCcceeeeeeehhHHHHHHhhhcccCceEEeccccccccc
Q psy6387 180 NESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYV 219 (483)
Q Consensus 180 ~~~~~a~d~~~fL~~F~~~fPe~~~~~~yi~GESYaG~yv 219 (483)
+..|+=.|+.+|+++-=.+|+.-.+.+...+|-||.|...
T Consensus 147 Ss~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLs 186 (514)
T KOG2182|consen 147 SSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLS 186 (514)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHH
Confidence 4566777888887777778875555589999999999543
No 147
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=23.69 E-value=11 Score=39.65 Aligned_cols=58 Identities=7% Similarity=-0.136 Sum_probs=40.5
Q ss_pred ceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhhhcCCcccccCCccch
Q psy6387 392 SYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWA 471 (483)
Q Consensus 392 ~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V~~AGHmvP~DqP~~a 471 (483)
.++||+.+|..|.+||....+.+.+... +-.++.+.++ |+ .++|+.+
T Consensus 355 ~~PvLiI~G~~D~ivP~~~a~~l~~~~~------------------------------~~~l~~i~~~-~~--~e~~~~~ 401 (414)
T PRK05077 355 PTPMLSGYWKNDPFSPEEDSRLIASSSA------------------------------DGKLLEIPFK-PV--YRNFDKA 401 (414)
T ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhCC------------------------------CCeEEEccCC-Cc--cCCHHHH
Confidence 6899999999999999887664433221 2233445554 33 3588999
Q ss_pred hhhhhhcccCC
Q psy6387 472 FDLITRFTHGS 482 (483)
Q Consensus 472 ~~mi~~fl~~~ 482 (483)
++.+.+|+..+
T Consensus 402 ~~~i~~wL~~~ 412 (414)
T PRK05077 402 LQEISDWLEDR 412 (414)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 148
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=22.67 E-value=12 Score=34.70 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=45.1
Q ss_pred ceeeeeeehhHHHHHHh--hhcccCceEEeccccccccccceeEEEecCCCCCCCcccccccceeeecCCCCCc
Q psy6387 183 HVGVNLYIGLVQFFKIF--KEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDP 254 (483)
Q Consensus 183 ~~a~d~~~fL~~F~~~f--Pe~~~~~~yi~GESYaG~yvP~lA~~I~~~n~~~~~~~~~inLkGi~IGNg~~dp 254 (483)
+..+|+.++++-..+.- -++...+++|+|+|=||+.+-.++.++.+... ..++++++-.|++|.
T Consensus 47 ~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~--------~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 47 AALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGL--------PKPKGIILISPWTDL 112 (211)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTT--------CHESEEEEESCHSST
T ss_pred ccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcc--------cchhhhhcccccccc
Confidence 44455555555444421 13556789999999999999999976665321 249999999998876
No 149
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=21.45 E-value=28 Score=24.44 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=21.6
Q ss_pred CCCCcchhhh-hhhhhhhhccccCcchhhhHH
Q psy6387 250 GLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEE 280 (483)
Q Consensus 250 g~~dp~~q~~-~~~~~y~~glid~~~~~~~~~ 280 (483)
|.+||..... -.+=+++.|+||.+.+..+.+
T Consensus 12 Giidp~tg~~lsv~~A~~~glId~~~~~~L~e 43 (45)
T PF00681_consen 12 GIIDPETGERLSVEEAIQRGLIDSDTAQKLLE 43 (45)
T ss_dssp SEEETTTTEEEEHHHHHHTTSS-HHHHHHHHH
T ss_pred eEEeCCCCeEEcHHHHHHCCCcCHHHHHHHHc
Confidence 7788877655 456678889999887766543
No 150
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=21.28 E-value=38 Score=35.81 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.5
Q ss_pred CceEEecccccccccccee
Q psy6387 205 NDFYVTGESYAGKYVPALA 223 (483)
Q Consensus 205 ~~~yi~GESYaG~yvP~lA 223 (483)
....|+|.|+||--.-.++
T Consensus 288 ~~~~IaG~S~GGl~AL~~a 306 (411)
T PRK10439 288 DRTVVAGQSFGGLAALYAG 306 (411)
T ss_pred cceEEEEEChHHHHHHHHH
Confidence 3588999999997655554
No 151
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=21.24 E-value=62 Score=22.48 Aligned_cols=18 Identities=0% Similarity=0.143 Sum_probs=15.0
Q ss_pred HHHHHHhhhhhhhHhhhc
Q psy6387 338 VLMEELFKNTAFRQAVHL 355 (483)
Q Consensus 338 ~~~~~yLN~~~Vr~ALhV 355 (483)
-.+..-|++||||++|++
T Consensus 14 ~gl~~~l~DpdvqrgL~~ 31 (42)
T PF07849_consen 14 FGLLRALRDPDVQRGLGF 31 (42)
T ss_pred HHHHHHHcCHHHHHHHHH
Confidence 446678999999999986
No 152
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=21.17 E-value=26 Score=37.81 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=55.8
Q ss_pred hHHHHHHhhhcCCCCceeEEEEcCeeeEEEecceeeccccccccccchhhccCCcceeeeecccchhhhcccchhhHHhh
Q psy6387 377 SVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLV 456 (483)
Q Consensus 377 s~~~~l~~LL~~~~~~~rVLiY~Gd~D~i~~~~gt~~~i~~L~w~g~~~f~~a~~~~w~~~~~vaGy~k~~~~nltfv~V 456 (483)
...+-|...-++ |=|+|+|+|..|.+++..+|.++-+++.=.-... ..++..| +-+..|
T Consensus 341 a~~pDLsaF~~~---GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~-----------~~~v~dF-------~RlF~v 399 (474)
T PF07519_consen 341 ATDPDLSAFRAR---GGKLILYHGWADPLIPPQGTIDYYERVVARMGGA-----------LADVDDF-------YRLFMV 399 (474)
T ss_pred CCCcCHHHHHhc---CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccc-----------cccccce-------eEEEec
Confidence 344556666666 8999999999999999999999887764110000 0012222 235678
Q ss_pred hcCCccc--ccCCccchhhhhhhcccC
Q psy6387 457 RNAGHMV--PKDQSEWAFDLITRFTHG 481 (483)
Q Consensus 457 ~~AGHmv--P~DqP~~a~~mi~~fl~~ 481 (483)
.|.||-- |...|-.++.-|.+|+.+
T Consensus 400 PGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 400 PGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 9999985 344666788888888753
No 153
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=21.12 E-value=19 Score=31.96 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.6
Q ss_pred ccCceEEeccccccccccceeEEEec
Q psy6387 203 QSNDFYVTGESYAGKYVPALAYTIHL 228 (483)
Q Consensus 203 ~~~~~yi~GESYaG~yvP~lA~~I~~ 228 (483)
...+++|+|+|-||..+-.+|..+.+
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 45689999999999988888877654
Done!