RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6387
(483 letters)
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase.
Length = 415
Score = 303 bits (777), Expect = 7e-99
Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 60/446 (13%)
Query: 65 PGLNITS----YSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM 120
PGL+ YSG+ TVD++ +LF+WFF ++ N P+++WL GGPG SS+
Sbjct: 1 PGLDGPLPFKQYSGYL----TVDESAGRSLFYWFFESE-NNPENDPLVLWLNGGPGCSSL 55
Query: 121 FGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRN 180
GLF+E GP +N L W K NV+++D PVG GFS+ Y +
Sbjct: 56 GGLFEELGPFRVNSGPT------LYLNPYSWNKVANVLFLDQPVGVGFSYSNTTSDYKTD 109
Query: 181 ESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKI 240
+ + Y L +FF+ F EY++N FY+ GESYAG YVPALA I N + I
Sbjct: 110 DEETAKDNYEFLQKFFEKFPEYKNNPFYIAGESYAGHYVPALAQEILDGN--KKGTGPNI 167
Query: 241 NLKGIAIGNGLCDPLNMMVYS-SYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYE 299
NLKG+ IGNGL DP + Y GL+ D +++++ +
Sbjct: 168 NLKGVLIGNGLTDPAIQYNSYIPFAYYHGLISDELYESLKKACCGKYPDCDP-ANTKCLN 226
Query: 300 AFDQIINGDFNKSTIFHTLTNFTNYFNYLVPVADNTSDVL------------------ME 341
++ + I N +N P N+S L +E
Sbjct: 227 LVEEASGCNAYNGGI--------NPYNIYTPCCYNSSLSLNPSSTDSCGGYDCYDESYVE 278
Query: 342 ELFKNTAFRQAVHLGNATFHS----DDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLF 397
+ R+A+H + +D V + D+ S+ + LL +VL
Sbjct: 279 KYLNRPDVRKALHANKGSVGEWSRCNDEVFNWYGDDISKSMLPILPKLLEGG---LRVLI 335
Query: 398 YNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQND--IAGYVKNVNKNFYEVL 455
Y+G D+I + T ++ L+W+GK+ WY D +AGYVK+ N
Sbjct: 336 YSGDHDLICNFLGTQAWIDALNWSGKD-----GFRPWYVSVDGQVAGYVKSY-GNLTFAT 389
Query: 456 VRNAGHMVPKDQSEWAFDLITRFTHG 481
V+ AGHMVP+DQ E A + RF G
Sbjct: 390 VKGAGHMVPEDQPEAALQMFKRFLSG 415
>gnl|CDD|240429 PTZ00472, PTZ00472, serine carboxypeptidase (CBP1); Provisional.
Length = 462
Score = 152 bits (385), Expect = 6e-41
Identities = 81/201 (40%), Positives = 114/201 (56%), Gaps = 20/201 (9%)
Query: 65 PGLNITSYSGFFRV-NSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGL 123
P +N +SG+F + + DK++ F+W F + N EAPVL+W+ GGPG SSMF L
Sbjct: 43 PSVN--QWSGYFDIPGNQTDKHY----FYWAFGPRNGN-PEAPVLLWMTGGPGCSSMFAL 95
Query: 124 FQEHGPLMLNKTKKNQTL-PYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNES 182
E+GP ++N+T + Y W VIY+D P G GFS+ + D Y NES
Sbjct: 96 LAENGPCLMNETTGDIYNNTY------SWNNEAYVIYVDQPAGVGFSYADKAD-YDHNES 148
Query: 183 HVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINL 242
V ++Y L FF ++ ++ND +V GESY G Y PA AY I++ N + + INL
Sbjct: 149 EVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKK--GDGLYINL 206
Query: 243 KGIAIGNGLCDPLNMMVYSSY 263
G+A+GNGL DP Y+SY
Sbjct: 207 AGLAVGNGLTDPYTQ--YASY 225
Score = 63.3 bits (154), Expect = 1e-10
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 394 KVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQN-DIAGYVK----NVN 448
+V+ Y G +D I + + L W G + AP + + AG V+ N +
Sbjct: 366 RVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTS 425
Query: 449 KNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHGSL 483
F V V NAGHMVP DQ A +I RF
Sbjct: 426 SGFSFVQVYNAGHMVPMDQPAVALTMINRFLRNRP 460
>gnl|CDD|177859 PLN02209, PLN02209, serine carboxypeptidase.
Length = 437
Score = 136 bits (344), Expect = 2e-35
Identities = 107/401 (26%), Positives = 183/401 (45%), Gaps = 69/401 (17%)
Query: 91 FFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTH 150
FF++F +KN E P+++WL GGPG S + GLF E+GPL L N ++P L +
Sbjct: 54 FFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYS 113
Query: 151 WTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVT 210
WTK N+I++D PVG+GFS+ + + + S V ++ L ++ ++ SN FYV
Sbjct: 114 WTKTANIIFLDQPVGSGFSYSKTPIERTSDTSEVK-KIHEFLQKWLIKHPQFLSNPFYVV 172
Query: 211 GESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLNMMVYSS-----YLY 265
G+SY+G VPAL + I + INL+G +GN P+ + + Y +
Sbjct: 173 GDSYSGMIVPALVHEI--SKGNYICCNPPINLQGYVLGN----PITHIEFEQNFRIPYAH 226
Query: 266 QLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQIINGDF------NKSTI----- 314
+ L+ D E YE+ +I G++ NK +
Sbjct: 227 GMSLISD-----------------------ELYESLKRICKGNYFSVDPSNKKCLKLVEE 263
Query: 315 FHTLTNFTNYFNYLVPVADNTSDV------------LMEELFKNTAFRQAVHLGNATFHS 362
+H T+ N + L+ D+++ L+E N + R+A+H+ +
Sbjct: 264 YHKCTDNINSHHTLIANCDDSNTQHISPDCYYYPYHLVECWANNESVREALHVDKGSIGE 323
Query: 363 --DDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDW 420
D KSD+ SS+ + NS N Y+ L ++G DI + + T ++K+L++
Sbjct: 324 WIRDHRGIPYKSDIRSSIPYHMN---NSIN-GYRSLIFSGDHDITMPFQATQAWIKSLNY 379
Query: 421 TGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGH 461
+ + ++ W + IAGY + + V+ GH
Sbjct: 380 SIIDDWR-----PWMIKGQIAGYTRTYSNKMTFATVKGGGH 415
>gnl|CDD|225490 COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid
transport and metabolism].
Length = 498
Score = 127 bits (321), Expect = 6e-32
Identities = 113/496 (22%), Positives = 173/496 (34%), Gaps = 80/496 (16%)
Query: 26 IADLYQPQPGDNVSAPLILTDYIERGELVKAKNLSKVNLPG-LNITSYSGFFRVNSTVDK 84
ADL G V+ I Y ++ + LS G L + Y+G
Sbjct: 35 AADLNTSDAGATVAVSSIHHAY-----RLRGRTLSYPATAGILPVRDYTG--------YP 81
Query: 85 NHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYL 144
+ FF+ F + A+ PV+ WL GGPG SS+ GL E GP + + Y
Sbjct: 82 DAEDFFFFYTFESPNDPANR-PVIFWLNGGPGCSSVTGLLGELGPKRIQ---SGTSPSYP 137
Query: 145 DTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQS 204
D + W ++++ID PVGTGFS ++ E G ++Y L FF F Y
Sbjct: 138 DNPGS-WLDFADLVFIDQPVGTGFSRALGDEKKKDFEG-AGKDVYSFLRLFFDKFPHYAR 195
Query: 205 N--DFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKINLKGIAIGNGL-CDPL-NMMVY 260
++ GESY G Y+P A+ + +N +NL + IGNGL DPL + Y
Sbjct: 196 LLSPKFLAGESYGGHYIPVFAHELLEDNIA---LNGNVNLSSVLIGNGLWTDPLTQYLTY 252
Query: 261 SSYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQIINGDFNKSTIFHTLTN 320
+ G D + +E E Y D S N
Sbjct: 253 EPIAAEKGPYDG----VLSSEECTKAE----KYCAGDYCLALMKGCYD---SGSLQPCEN 301
Query: 321 FTNYFNYLVPVA-DNTSDVLMEELFKNTAFRQAVHLGNATFHSDDTVEKFLKSD-----V 374
+ Y L+ L+ R LG + + + T + D
Sbjct: 302 ASAYLTGLMREYVGRAGGRLLNVYDIREECRDP-GLGGSCYDTLSTSLDYFNFDPEQEVN 360
Query: 375 MSSVKIWIEI-------------------------LLNSTNPSYKVLFYNGQLDIIVAYP 409
V LL + L Y G D I
Sbjct: 361 DPEVDNISGCTTDAMTDFLTFTGGWAKPSRYLVLNLLVNNVWI---LLYAGDKDFICNLR 417
Query: 410 LTVNFLKTLDWTGKEAYKTAPRTAWYYQN----DIAGYVKNVNKNFYEVLVRNAGHMVPK 465
+ L W G Y A + ++ + + G K+ +N + + AGHMVP
Sbjct: 418 GNMALDPKLKWLGASGYFDA--STPFFWSRLTLEEMGGYKS-YRNLTFLRIYEAGHMVPY 474
Query: 466 DQSEWAFDLITRFTHG 481
D+ E + +++ + +G
Sbjct: 475 DRPESSLEMVNLWING 490
>gnl|CDD|178590 PLN03016, PLN03016, sinapoylglucose-malate O-sinapoyltransferase.
Length = 433
Score = 120 bits (303), Expect = 6e-30
Identities = 108/402 (26%), Positives = 177/402 (44%), Gaps = 73/402 (18%)
Query: 91 FFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTH 150
FF++F E N E P+L+WL GGPG S + G+ E+GP+ L N + P L +
Sbjct: 52 FFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYS 111
Query: 151 WTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVT 210
WTK N+I++D PVG+GFS+ + + + S V + L ++ +Y SN YV
Sbjct: 112 WTKMANIIFLDQPVGSGFSYSKTPIDKTGDISEVK-RTHEFLQKWLSRHPQYFSNPLYVV 170
Query: 211 GESYAGKYVPALAYTIHLNNPEQGSE---KDKINLKGIAIGNGLCDPLNMMVYSS----- 262
G+SY+G VPAL I QG+ + INL+G +GN P+ M +
Sbjct: 171 GDSYSGMIVPALVQEI-----SQGNYICCEPPINLQGYMLGN----PVTYMDFEQNFRIP 221
Query: 263 YLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQIINGDF------NKSTI-- 314
Y Y +GL+ D E YE +I NG++ N +
Sbjct: 222 YAYGMGLISD-----------------------EIYEPMKRICNGNYYNVDPSNTQCLKL 258
Query: 315 ---FHTLTNFTNYFNYLVPVADNTSDV----------LMEELFKNTAFRQAVHLGNATFH 361
+H T N + L P D T+ L+E + + R+A+H+ +
Sbjct: 259 TEEYHKCTAKINIHHILTPDCDVTNVTSPDCYYYPYHLIECWANDESVREALHIEKGSKG 318
Query: 362 SDDTVEKFL--KSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLD 419
+ + D++SS I +N++ Y+ L Y+G DI V + T ++++L+
Sbjct: 319 KWARCNRTIPYNHDIVSS----IPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLN 374
Query: 420 WTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGH 461
++ ++ W N IAGY + + ++ GH
Sbjct: 375 YSPIHNWR-----PWMINNQIAGYTRAYSNKMTFATIKAGGH 411
>gnl|CDD|165857 PLN02213, PLN02213, sinapoylglucose-malate O-sinapoyltransferase/
carboxypeptidase.
Length = 319
Score = 72.8 bits (178), Expect = 4e-14
Identities = 85/357 (23%), Positives = 147/357 (41%), Gaps = 74/357 (20%)
Query: 156 NVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYA 215
N+I++D PVG+GFS+ + + + S V + L ++ +Y SN YV G+SY+
Sbjct: 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVK-RTHEFLQKWLSRHPQYFSNPLYVVGDSYS 61
Query: 216 GKYVPALAYTIHLNNPEQGSE---KDKINLKGIAIGNGLCDPLNMMVYSS-----YLYQL 267
G VPAL I QG+ + INL+G +GN P+ M + Y Y +
Sbjct: 62 GMIVPALVQEI-----SQGNYICCEPPINLQGYMLGN----PVTYMDFEQNFRIPYAYGM 112
Query: 268 GLVDDNGKKAIEEKEKQAMELILQWKWNEAYEAFDQIINGDFNK-----------STIFH 316
GL+ D E YE +I NG++ + +H
Sbjct: 113 GLISD-----------------------EIYEPMKRICNGNYYNVDPSNTQCLKLTEEYH 149
Query: 317 TLTNFTNYFNYLVPVADNTSDV----------LMEELFKNTAFRQAVHLGNATFHSDDTV 366
T N + L P D T+ L+E + + R+A+H+ +
Sbjct: 150 KCTAKINIHHILTPDCDVTNVTSPDCYYYPYHLIECWANDESVREALHIEKGSKGKWARC 209
Query: 367 EKFL--KSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKE 424
+ + D++SS I +N++ Y+ L Y+G DI V + T ++++L+++
Sbjct: 210 NRTIPYNHDIVSS----IPYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIH 265
Query: 425 AYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHG 481
++ W N IAGY + + ++ GH +E F + R+ G
Sbjct: 266 NWR-----PWMINNQIAGYTRAYSNKMTFATIKAGGHTAEYRPNE-TFIMFQRWISG 316
>gnl|CDD|184804 PRK14720, PRK14720, transcript cleavage factor/unknown domain
fusion protein; Provisional.
Length = 906
Score = 32.8 bits (75), Expect = 0.49
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 256 NMMVYSSYLYQLGLVDDNGKKAIEE--KEKQAMELILQWKWNEAYEAFDQIINGDFNK-- 311
+ V S+YL L ++ + + +E + +ELIL+ + E FD I+N + K
Sbjct: 502 DDPVISAYLILKSLGNELPDEEFKRNIEEDELLELILKLYSKDIVELFDAILNAEIKKEF 561
Query: 312 -STIFHTLTNFTNYFNYLVPVADNTSDVLMEELFKNTAFRQAVHLGN 357
I L+N+ Y+ L P N + + L++ F + L
Sbjct: 562 VDLIKKHLSNWEEYYKGLFPHKVNKY--VFDSLYEEGKFDELNSLFK 606
>gnl|CDD|227216 COG4879, COG4879, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 243
Score = 31.4 bits (71), Expect = 0.80
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 259 VYSSYLYQLGLVDDNGKK-----AIEEKEKQAMELILQWKWNEAYEAFDQIINGDFNKST 313
+Y Y GL+ DN + IE + +A+++IL + EA + + G +
Sbjct: 66 LYVVGKYGAGLLADNPEDFDKVFYIENRYLEAVKIILTPELKEALVKKEGEVKGSSAEDR 125
Query: 314 IFHTL-TNFTN-YFNY 327
+ L FT F +
Sbjct: 126 VARVLRLVFTGVMFGF 141
>gnl|CDD|114645 pfam05934, MCLC, Mid-1-related chloride channel (MCLC). This
family consists of several mid-1-related chloride
channels. mid-1-related chloride channel (MCLC) proteins
function as a chloride channel when incorporated in the
planar lipid bilayer.
Length = 577
Score = 30.9 bits (69), Expect = 1.8
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 393 YKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFY 452
YK+ F Q ++ K +DW+ + + A +++D ++++
Sbjct: 253 YKLAFAEHQAELAKLEDFDKVCAKKIDWSE--SIFDWFKGAATFKDDPC-------EDYF 303
Query: 453 EVLVRNAGHMVP 464
E L+ N +VP
Sbjct: 304 EALIVNPILLVP 315
>gnl|CDD|220491 pfam09958, DUF2192, Uncharacterized protein conserved in archaea
(DUF2192). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 231
Score = 30.4 bits (69), Expect = 1.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 265 YQLGLVDDNGKK-----AIEEKEKQAMELILQWKWNEAYEAFDQIINGDFNKSTIFHTL 318
Y LGL +D IE + ++A+E+IL+ + EA E + G +++ + L
Sbjct: 69 YGLGLDEDYPGVFDKLFYIENRYEEALEIILEKEPEEAREKVTGELGGKSDENKVARVL 127
>gnl|CDD|173552 PTZ00359, PTZ00359, hypothetical protein; Provisional.
Length = 443
Score = 30.2 bits (68), Expect = 2.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 255 LNMMVYSSYLYQLGLVDDNGKKAIEEKE 282
+ M+V++++ Y LG +NGKK ++KE
Sbjct: 191 IYMLVFAAHAYTLGEFKENGKKYGKDKE 218
>gnl|CDD|221375 pfam12008, EcoR124_C, Type I restriction and modification enzyme -
subunit R C terminal. This enzyme has been
characterized and shown to belong to a new family of the
type I class of restriction and modification enzymes.
This family is involved in bacterial defence by making
double strand breaks in specific double stranded DNA
sequences, e.g. that of invading bacteriophages. EcoR124
is made up of three subunits, HsdR, HsdS and HsdM. The R
subunit has ATPase and restriction endonuclease
activity. This domain is the C terminal of the R
subunit.
Length = 269
Score = 29.5 bits (67), Expect = 3.3
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 279 EEKEKQAMELILQWKWNE--AYEAFDQIINGDFNKSTIFHTLTNFTNYFNYLVPVADNTS 336
E+KEK+ EL + +E E D+ + GD N+ L +
Sbjct: 194 EKKEKELEELAEEEGLDEEALKEFIDEYLTGDLNEIPRGDDLKDLLPPEKLKAKFRKKEK 253
Query: 337 --DVLMEEL 343
L E+L
Sbjct: 254 KKKRLNEKL 262
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 29.8 bits (67), Expect = 3.6
Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 37/176 (21%)
Query: 47 YIERGELVKAKNLSKVNLPGLNITSYSGFFRVNSTVDKNHSSALFFWF-FPAQEKNASEA 105
+RGE K + + L + + T N + W P +
Sbjct: 340 LYDRGEEAKLTSSNNSGLKKVKLAEPEPV-----TYKSNDGETIHGWLYKPPGFDPRKKY 394
Query: 106 PVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNP-- 163
P++V++ GGP A + E L + V+ +
Sbjct: 395 PLIVYIHGGPSAQVGYSFNPEIQVLAS--------------------AGYAVLAPNYRGS 434
Query: 164 VGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSND---FYVTGESYAG 216
G G F + G L+ + D +TG SY G
Sbjct: 435 TGYGREFADAIRG------DWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGG 484
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 29.3 bits (66), Expect = 5.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 97 AQEKNASEAPVLVWLQGG 114
A E A + PV+V++ GG
Sbjct: 86 APEVPAEKLPVMVYIHGG 103
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.2 bits (65), Expect = 6.5
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 278 IEEKEKQAMELILQWKWN----EAYEAFDQIINGDFN---------KSTIFHTLTNFTNY 324
IE E Q EL+ W E YE + +N D N + + L+ +
Sbjct: 3070 IEAVEYQFKELVKNWPETCELAELYERYVAGLNPDDNAPCAGELSKRESGDDDLSEWEKV 3129
Query: 325 FNYLVPVADNTSDV 338
+ V + + +
Sbjct: 3130 ASSEVSLRNEDQLI 3143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,633,384
Number of extensions: 2375955
Number of successful extensions: 1999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1976
Number of HSP's successfully gapped: 23
Length of query: 483
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 382
Effective length of database: 6,457,848
Effective search space: 2466897936
Effective search space used: 2466897936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)