RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6387
(483 letters)
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein,
transmembrane; HET: NAG; 2.40A {Saccharomyces
cerevisiae} SCOP: c.69.1.5
Length = 483
Score = 377 bits (969), Expect = e-127
Identities = 107/464 (23%), Positives = 194/464 (41%), Gaps = 49/464 (10%)
Query: 59 LSKVNLPGLNITSYSGFFRVNSTV---DKNHSSALFFWFFPAQEKNAS-EAPVLVWLQGG 114
LS+V P ++G + S + FFW F + N + + P+++WL GG
Sbjct: 17 LSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGG 76
Query: 115 PGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEH- 173
PG SSM G E GP +N K L + W ++++ID P GTGFS ++
Sbjct: 77 PGCSSMDGALVESGPFRVNSDGK------LYLNEGSWISKGDLLFIDQPTGTGFSVEQNK 130
Query: 174 ------NDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIH 227
+ + + V + L +FKIF E + ++GESYAG+Y+P A I
Sbjct: 131 DEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAIL 190
Query: 228 LNNPEQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGK--KAIEEKEKQ 284
+N + D +LK + IGNG DP + Y + + L+D++ K + +
Sbjct: 191 NHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHEN 250
Query: 285 AMELILQWKWNEA----YEAFDQIING--DFNKSTIFHTLTNFTNYFNYLVPVADNTSDV 338
LI +EA Y+ + I+N + + + + N +N+ + + + +
Sbjct: 251 CQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGM 310
Query: 339 L-------MEELFKNTAFRQAVHLGNATFHS----DDTVEKFLKSDVMSSVKIWIEILLN 387
+ + F ++HL + ++V L + + + LL
Sbjct: 311 NWPKDISFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLE 370
Query: 388 STNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQND-------- 439
S +++ +NG D+I ++ + L W G + + + +
Sbjct: 371 SG---IEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEE 427
Query: 440 IAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHGSL 483
+GYVK +N V V NA HMVP D+S + ++ +++ +
Sbjct: 428 FSGYVKYD-RNLTFVSVYNASHMVPFDKSLVSRGIVDIYSNDVM 470
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
1wpx_A* 1ysc_A*
Length = 421
Score = 360 bits (926), Expect = e-121
Identities = 111/445 (24%), Positives = 173/445 (38%), Gaps = 48/445 (10%)
Query: 61 KVNLPGL-----NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGP 115
K+ P + N+T Y+G+ V + FFW F ++ + ++ PV++WL GGP
Sbjct: 1 KIKDPKILGIDPNVTQYTGYLDVE-----DEDKHFFFWTFESR-NDPAKDPVILWLNGGP 54
Query: 116 GASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHND 175
G SS+ GLF GP + K W N VI++D PV GFS+
Sbjct: 55 GCSSLTGLFFALGPSSIGPDLK------PIGNPYSWNSNATVIFLDQPVNVGFSYS--GS 106
Query: 176 LYSRNESHVGVNLYIGLVQFFKIFKEY--QSNDFYVTGESYAGKYVPALAYTIHLNNPEQ 233
N G ++Y L FF F EY + DF++ G SYAG Y+P A I +
Sbjct: 107 SGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHK--- 163
Query: 234 GSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGL----VDDNGKKAIEEKEKQAMEL 288
NL + IGNGL DPL Y G + A+E+ ++ + L
Sbjct: 164 ---DRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGL 220
Query: 289 ILQWKWNEAYEAFDQIINGDFNKSTIFHTLTN-FTNYFNYLVPVADNT----SDVLMEEL 343
I ++ + + + + N ++ + +++
Sbjct: 221 IE--SCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDY 278
Query: 344 FKNTAFRQAVHLGNATFH--SDDTVEKFLKS-DVMSSVKIWIEILLNSTNPSYKVLFYNG 400
++AV + + D FL + D M + LLN +L Y G
Sbjct: 279 LNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQ---DLPILVYAG 335
Query: 401 QLDIIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQND--IAGYVKNVNKNFYEVLVRN 458
D I + + L W E + + W +AG VK+ K+F + V N
Sbjct: 336 DKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSY-KHFTYLRVFN 394
Query: 459 AGHMVPKDQSEWAFDLITRFTHGSL 483
GHMVP D E A ++ + HG
Sbjct: 395 GGHMVPFDVPENALSMVNEWIHGGF 419
>1ivy_A Human protective protein; carboxypeptidase, serine
carboxypeptidase, protective protei glycoprotein,
zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP:
c.69.1.5
Length = 452
Score = 319 bits (818), Expect = e-104
Identities = 108/474 (22%), Positives = 196/474 (41%), Gaps = 73/474 (15%)
Query: 56 AKNLSKV-NLPGL----NITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVW 110
A + ++ LPGL + YSG+ + + S L +WF + +K+ +PV++W
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGY------LKSSGSKHLHYWFVES-QKDPENSPVVLW 53
Query: 111 LQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSF 170
L GGPG SS+ GL EHGP ++ L+ W NV+Y+++P G GFS+
Sbjct: 54 LNGGPGCSSLDGLLTEHGPFLVQPDGVT-----LEYNPYSWNLIANVLYLESPAGVGFSY 108
Query: 171 VEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNN 230
+ Y+ N++ V + + L FF++F EY++N ++TGESYAG Y+P LA + +
Sbjct: 109 SDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDP 167
Query: 231 PEQGSEKDKINLKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQAMELI 289
+NL+G+A+GNGL + Y GL+ + +++ +
Sbjct: 168 --------SMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCN 219
Query: 290 L----QWKWNEAYEAFDQIINGD----------------------------FNKSTIFHT 317
+ + +I+ + IF
Sbjct: 220 FYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTR 279
Query: 318 LTNFTNYFNYLVPVADN-------TSDVLMEELFKNTAFRQAVHLGNATFH---SDDTVE 367
L + L+ D T+ N R+A+++ + V
Sbjct: 280 LPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVN 339
Query: 368 KFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKTLDWTGKEAYK 427
+ S ++++L + Y++L YNG +D+ + F+ +L+ + +
Sbjct: 340 LQYRRLYRSMNSQYLKLLSSQ---KYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRR 396
Query: 428 TAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWAFDLITRFTHG 481
IAG+VK + + + ++ AGHMVP D+ AF + +RF +
Sbjct: 397 PWLVKYGDSGEQIAGFVKEFS-HIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNK 449
>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum}
SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A*
Length = 255
Score = 240 bits (615), Expect = 6e-77
Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%)
Query: 64 LPGLNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSM-FG 122
P ++ YSG+ TVD+ +LF+ A ++A AP+++WL GGPG SS+ +G
Sbjct: 12 QPAVDFDMYSGYI----TVDEGAGRSLFYLLQEA-PEDAQPAPLVLWLNGGPGCSSVAYG 66
Query: 123 LFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHN-DLYSRNE 181
+E G + + L + W K NV+++D+P G GFS+ + D+Y+ +
Sbjct: 67 ASEELGAFRVKP--RGAGLVL---NEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 182 SHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEKDKIN 241
+ + Y L ++F+ F Y+ DFY+ GESYAG YVP L+ +H + IN
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK------NPVIN 175
Query: 242 LKGIAIGNGLCDPLNMMV-YSSYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNEAYEA 300
LKG +GNGL D + V + + G+V D+ + ++E + + A +
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDV 235
Query: 301 FDQIING 307
Sbjct: 236 ATAEQGN 242
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex,
cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
bicolor} SCOP: c.69.1.5
Length = 270
Score = 227 bits (581), Expect = 9e-72
Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 22/254 (8%)
Query: 63 NLPG----LNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGAS 118
LPG + Y G+ T+D N+ AL++WF A + + AP+++WL GGPG S
Sbjct: 12 GLPGQPNGVAFGMYGGYV----TIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCS 67
Query: 119 SM-FGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLY 177
S+ G QE G ++ ++ L + W K N+++ ++P G GFS+ +
Sbjct: 68 SIGLGAMQELGAFRVHTNGES-----LLLNEYAWNKAANILFAESPAGVGFSYSNTSSDL 122
Query: 178 SRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTGESYAGKYVPALAYTIHLNNPEQGSEK 237
S + + + Y LV++F+ F Y +FY+ GES G ++P L+ ++ N +
Sbjct: 123 SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNR----NNS 176
Query: 238 DKINLKGIAIGNGLCDP-LNMMVYSSYLYQLGLVDDNGKKAIEEKEKQAMELILQWKWNE 296
IN +G+ + +GL + +M+ + GL+ D + + + + + E
Sbjct: 177 PFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTE 236
Query: 297 AYEAFDQIINGDFN 310
+ G+ N
Sbjct: 237 VWNKALAEQ-GNIN 249
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex,
cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
bicolor} SCOP: c.69.1.5
Length = 158
Score = 103 bits (258), Expect = 3e-26
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 350 RQAVHLGNATFHS------DDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLD 403
+ A+H + +T+ + ++ E++ +V Y+G D
Sbjct: 22 QTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAG----LRVWVYSGDTD 77
Query: 404 IIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMV 463
+V T L L+ K ++ P + ++ G+ + V VR AGH+V
Sbjct: 78 SVVPVSSTRRSLAALELPVKTSWY--PWYMAPTEREVGGWSVQY-EGLTYVTVRGAGHLV 134
Query: 464 PKDQSEWAFDLITRFTHG 481
P + AF L +F G
Sbjct: 135 PVHRPAQAFLLFKQFLKG 152
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum}
SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B*
Length = 153
Score = 99.4 bits (248), Expect = 7e-25
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 16/138 (11%)
Query: 350 RQAVHLGNATFHS------DDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLD 403
+ A+H + DT+ S + I+ E++ ++ ++G D
Sbjct: 20 QMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAG----LRIWVFSGDTD 75
Query: 404 IIVAYPLTVNFLKTLDWTGKEAYKTAPRTAWYYQNDIAGYVKNVNKNFYEVLVRNAGHMV 463
+V T + L ++ WY ++ G+ + K V VR AGH V
Sbjct: 76 AVVPLTATRYSIGALGLPTTTSWY-----PWYDDQEVGGWSQVY-KGLTLVSVRGAGHEV 129
Query: 464 PKDQSEWAFDLITRFTHG 481
P + A L F G
Sbjct: 130 PLHRPRQALVLFQYFLQG 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 8e-08
Identities = 52/330 (15%), Positives = 93/330 (28%), Gaps = 84/330 (25%)
Query: 11 LVVTCAQCSINKYPRIADLYQPQP----GDNVSAPLILTDYIERGELVKAKNLSKVNLPG 66
L++ C PR P+ +++ L D + K + + +L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 67 LNITSYSGFFRVNSTVDKNHSSALFFWFFPAQEKNASEAPVLVWLQGGPGASSMFGLFQE 126
L Y F L FP + L+W + M + +
Sbjct: 366 LEPAEYRKMFD-----------RLSV--FPPSAHIPTILLSLIWFDV-IKSDVMVVVNKL 411
Query: 127 HGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGV 186
H ++ K K T+ IY++ + NE
Sbjct: 412 HKYSLVEKQPKESTISIPS------------IYLE--------LKVKLE----NE----Y 443
Query: 187 NLYIGLVQFFKIFKEYQSNDFYVTGE-SYAGKYVPALAYTIHLNNPEQGSEKD------- 238
L+ +V + I K + S+D Y + + + HL N E
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---IGH--HLKNIEHPERMTLFRMVFL 498
Query: 239 -------KINLKGIAIG--NGLCDPLN-MMVYSSYL------YQLGLVDD-------NGK 275
KI A + + L + Y Y+ Y+ LV+ +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKIEE 557
Query: 276 KAIEEKEKQAMELILQWKWNEAY-EAFDQI 304
I K + + L + + EA Q+
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 74/423 (17%), Positives = 128/423 (30%), Gaps = 149/423 (35%)
Query: 35 GDNVSAPLILTDYIERGELVKAKNLSKVNLPGLNITSY-SGFFRVNSTVDKNHSSALFFW 93
G+++ A LVK K L I +Y + DK +SAL
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKEL---------IKNYITARIMAKRPFDKKSNSAL--- 145
Query: 94 FFPAQEKNASEAPVLVWLQGGPGASSMF-----GLFQEHGPLM-------------LNKT 135
F E NA + GG G + + L+Q + L+ L +T
Sbjct: 146 FRAVGEGNAQLVAIF----GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 136 KKNQTLPY---LDTRKTHWTKN----HNVIYIDN-PVGTGFSF----------------- 170
+ + L+ + W +N + Y+ + P+ S
Sbjct: 202 TLDAEKVFTQGLNILE--WLENPSNTPDKDYLLSIPI----SCPLIGVIQLAHYVVTAKL 255
Query: 171 --VEHNDLYSRNESHVGVNLYIGLV------------QFFKIFKEYQSNDFYVTG----E 212
+L S + G + GLV FF ++ + F++ G E
Sbjct: 256 LGFTPGELRSYLKGATGHSQ--GLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYE 312
Query: 213 SYAGKYVPALAYTIHLNNPE---------QGSEK-------DKINLKG-------IAIGN 249
+Y +P L N E + +K N I++ N
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 250 GLCDPLNMMV--YSSYLYQLGLVDDNGKKAIEEKEKQA------MELILQWKWNEAYEAF 301
G N++V LY GL K Q+ +L + F
Sbjct: 373 G---AKNLVVSGPPQSLY--GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-------F 420
Query: 302 DQIINGDFNKSTIFHTLTNFTNYFNYLVPVADNTSDVLMEELFKNTAFRQAVHLGNATFH 361
+ ++ FH+ + LVP + D++ ++L KN A + +
Sbjct: 421 LPV-------ASPFHS--------HLLVPAS----DLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 362 SDD 364
+ D
Sbjct: 462 TFD 464
Score = 46.2 bits (109), Expect = 3e-05
Identities = 58/352 (16%), Positives = 104/352 (29%), Gaps = 133/352 (37%)
Query: 171 VEHNDLYSRNESHVGVNLYIGLVQ----FFKIF----KEYQSNDFYVTGESYAGKYVPAL 222
+ H L + V + Q F KI + + ++D T GK+ L
Sbjct: 11 LSHGSL--EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF---L 65
Query: 223 AYTIHLNNPEQGSEKDKINLKGIAIGNGLCDPLNMMVYSSYLYQ-------LGLVDDNGK 275
Y L P + + D++ L L + + YL L+ +N
Sbjct: 66 GYVSSLVEPSKVGQFDQV-LN-----LCLTE-----FENCYLEGNDIHALAAKLLQENDT 114
Query: 276 KAIEEKEKQAMELILQWKWNEAYEAFDQIINGDFNK---STIFHTLT------------- 319
++ KE +++ A + F+K S +F +
Sbjct: 115 TLVKTKE------LIK----NYITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 320 -NFTNYFN-----YLVPVADNTSDVLMEELFKNTAFRQAVHLGNATFHSDDTVEKFLKS- 372
N +YF Y T VL+ +L K +A L + D + F +
Sbjct: 164 GNTDDYFEELRDLY------QTYHVLVGDLIKFSA----ETLSELIRTTLDAEKVFTQGL 213
Query: 373 DVMSSVKIWIEILLN-STNPS---------------------Y----KVLFYN-GQL--- 402
+++ W+E N S P Y K+L + G+L
Sbjct: 214 NILE----WLE---NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 403 ---------DIIVA------------YPLTVNFLKTLDWTGKEAYKTAPRTA 433
++ A + + L + G Y+ P T+
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Score = 36.2 bits (83), Expect = 0.025
Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 79/185 (42%)
Query: 24 PRIADLYQPQPGDNVSAP-----------LILTDYIERGELVKAKNLSKVNLP------G 66
+ ++ + P V++P LI D ++ AK++ +P G
Sbjct: 414 LKFSNRFLP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDI---QIPVYDTFDG 465
Query: 67 LNITSYSGFFRVNSTVDKNHSSALF----FWFFPAQEKNASEAP--VLVWLQGGPGASSM 120
++ SG ++ + + W E +L + GPG +S
Sbjct: 466 SDLRVLSG------SISERIVDCIIRLPVKW-----ETTTQFKATHILDF---GPGGAS- 510
Query: 121 FGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVIYIDNPVGTGFSFVEHNDLYSRN 180
GL G L T +N+ GTG + L
Sbjct: 511 -GL----GVL----THRNKD------------------------GTGVRVIVAGTLDINP 537
Query: 181 ESHVG 185
+ G
Sbjct: 538 DDDYG 542
Score = 35.8 bits (82), Expect = 0.038
Identities = 44/206 (21%), Positives = 71/206 (34%), Gaps = 74/206 (35%)
Query: 7 FLVLLVVTCAQCSINKYPRIADLYQPQPGDNVSAPLILTDYIERGELVKAKNLSKVNLPG 66
L + V C + YP + P IL D +E E +P
Sbjct: 302 VLFFIGVRCYEA----YPNTS-----------LPPSILEDSLENNE----------GVPS 336
Query: 67 --LNITSYSGFFRVNSTVDK-NHSSALFFWFFPAQEK------NASEAPVLVWLQGGPGA 117
L+I++ + +V V+K N PA ++ N ++ V+ GP
Sbjct: 337 PMLSISNLT-QEQVQDYVNKTNSH-------LPAGKQVEISLVNGAKNLVV----SGP-P 383
Query: 118 SSMFGLFQEHGPLMLNKTK----KNQT-LPYLDTRKTHWTKNHNVIYIDN---PVGTGFS 169
S++GL L L K K +Q+ +P+ RK + N PV + F
Sbjct: 384 QSLYGL-----NLTLRKAKAPSGLDQSRIPF-SERK---------LKFSNRFLPVASPF- 427
Query: 170 FVEHNDLYSRNESHVGVNLYIGLVQF 195
H+ L + +L V F
Sbjct: 428 ---HSHLLVPASDLINKDLVKNNVSF 450
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA
polymerase mRNA export; 1.74A {Encephalitozoon cuniculi}
PDB: 2xpo_A 2xpn_A 2xpl_A
Length = 145
Score = 31.9 bits (72), Expect = 0.17
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 358 ATFHSDDTVEKFLKSDVMSSVKIWIEILLNSTNPSYKVLFYNGQLDIIVAYPLTVNFLKT 417
S E L ++ +K W+E L + + P+ K+ LD++ + L T
Sbjct: 46 DILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIR--KRLLDVLKTMKIHKEHLVT 103
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 31.6 bits (72), Expect = 0.47
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 454 VLVRNAGHMVPKDQSEWAFDLITRF 478
V + GH D+ E + I R
Sbjct: 258 VTLPRIGHAPTLDEPE-SIAAIGRL 281
>1mb3_A Cell division response regulator DIVK; signal transduction protein,
structural proteomics in europe, spine, structural
genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1
PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Length = 124
Score = 30.5 bits (70), Expect = 0.47
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 253 DPLNMMVYSSYLYQLGL-VD--DNGKKAIEEKEKQAMELIL 290
+ LNM ++ L G G A+ + +LIL
Sbjct: 10 NELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLIL 50
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.93
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 11/39 (28%)
Query: 275 KKAIEEKEKQAMELILQWK---------WNEAYEAFDQI 304
+K ++E + + + +W+ WN+ +Q+
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS--EQV 131
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro
structure initiative, NEW YORK SGX research center for
STRU genomics, nysgxrc; 2.10A {Hahella chejuensis}
Length = 144
Score = 29.9 bits (68), Expect = 0.94
Identities = 9/43 (20%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 253 DPLNMMVYSSYLYQLGL---VD--DNGKKAIEEKEKQAMELIL 290
+P ++ + L + + ++ DNG KA+ + ++ +LI+
Sbjct: 14 NPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLII 56
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Length = 478
Score = 30.2 bits (68), Expect = 1.5
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 293 KWNEAYEAFDQIINGDFNKSTIFHTLTNFTNYFNYLVPVADNTSDVLME 341
+ EA II+ + + ++ + T+ A ++
Sbjct: 212 NYAEAETYSAFIIDHASEINAKYTSIADLTSETGLFYSNASVKGSRILG 260
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 30.0 bits (68), Expect = 1.7
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 96 PAQEKNASEAPVLVWLQGG---PGASSMF 121
P+ + S+ PV +++QGG +++ +
Sbjct: 93 PSTATSQSKLPVWLFIQGGGYAENSNANY 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.5
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 212 ES----YAGKYVPALAY--TI 226
++ YA PALA T+
Sbjct: 26 QASLKLYADDSAPALAIKATM 46
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 29.7 bits (67), Expect = 2.7
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 96 PAQEKNASEAPVLVWLQGG---PGASSMF 121
P K + PV++W+ GG G+ ++F
Sbjct: 105 PPGTKAGANLPVMLWIFGGGFEIGSPTIF 133
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 29.3 bits (66), Expect = 2.9
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 454 VLVRNAGHMVPKDQSEWAFDLITRF 478
+ H ++ E ++ +F
Sbjct: 294 HVFPGTSHCTHLEKPEEFRAVVAQF 318
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 29.3 bits (66), Expect = 2.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 96 PAQEKNASEAPVLVWLQGG---PGASSMF 121
PA K ++ PV+VW+ GG G+S+ +
Sbjct: 113 PAGTKPDAKLPVMVWIYGGAFVYGSSAAY 141
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component;
mutagenesis, transferase, sugar transport,
phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A
2wwv_A
Length = 103
Score = 27.5 bits (61), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 279 EEKEKQAMELIL---QWKWNEAYEAFDQIINGDFNKS 312
EE E+ M LI+ Q + + AY A Q GDF +
Sbjct: 2 EELEEVVMGLIINSGQAR-SLAYAALKQAKQGDFAAA 37
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 28.4 bits (64), Expect = 4.3
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 24/80 (30%)
Query: 99 EKNASEAPVLVWLQGGPGASSMFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHWTKNHNVI 158
E N VLV+L G S + + + T N++VI
Sbjct: 10 EANVETNQVLVFLHGFLSDSRTY----------------HNHIEKF-------TDNYHVI 46
Query: 159 YIDNPVGTGFSFVEHNDLYS 178
ID P G G ++ ++
Sbjct: 47 TIDLP-GHGEDQSSMDETWN 65
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 28.1 bits (63), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 96 PAQEKNASEAPVLVWLQGG---PGASSMF 121
PA + PV+VW+ GG GA+S +
Sbjct: 106 PADLTKKNRLPVMVWIHGGGLMVGAASTY 134
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 28.2 bits (62), Expect = 7.5
Identities = 4/45 (8%), Positives = 17/45 (37%)
Query: 434 WYYQNDIAGYVKNVNKNFYEVLVRNAGHMVPKDQSEWAFDLITRF 478
+ +++ +N++ ++ H+V + + + I
Sbjct: 296 NWCPPQNQLFLQKTLQNYHLDVIPGGSHLVNVEAPDLVIERINHH 340
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 27.7 bits (61), Expect = 8.3
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 19/141 (13%)
Query: 94 FFPAQEKNASEAPVLVWLQGGPGASS--MFGLFQEHGPLMLNKTKKNQTLPYLDTRKTHW 151
F P + P++V+L G + + G ++ + + P
Sbjct: 163 FVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCF------- 215
Query: 152 TKNHNVIYIDNPVGTGFSFVEHNDLYSRNESHVGVNLYIGLVQFFKIFKEYQSNDFYVTG 211
V+ P + +S + D + + I +++ N Y+TG
Sbjct: 216 -----VLAPQCPPNSSWSTLF-TDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITG 269
Query: 212 ESYAGKYVPALAYTIHLNNPE 232
S G +T + PE
Sbjct: 270 LSMGG----YGTWTAIMEFPE 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,384,163
Number of extensions: 437278
Number of successful extensions: 1068
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1022
Number of HSP's successfully gapped: 43
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)