BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6389
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B And
Elongin-C At 2.55a Resolution
Length = 187
Score = 224 bits (570), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 122/154 (79%)
Query: 232 LVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHA 291
LVPDL I + YWG MD+Y AE LLE PEGTFLLRDSAQE+YLFSVSFR++ RSLHA
Sbjct: 24 LVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHA 83
Query: 292 RIEQWNHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTFPLQHIC 351
RIEQWNH FSFD+HDP V+ SP + GL+EHYKDP+ MFFEP+L+ PL R F F LQHIC
Sbjct: 84 RIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPFSLQHIC 143
Query: 352 RSVICSNISYDGISQLQLPKTLKSYLKEYHYKQR 385
R+VIC+ +YDGI L +P ++K YLKEYHYK +
Sbjct: 144 RTVICNCTTYDGIDALPIPSSMKLYLKEYHYKSK 177
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 229 IHCLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRS 288
+ L +LK + +YWG + R+EAE L + P+G+FL+RDS+ + YL S+SFR G++
Sbjct: 11 VTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKT 70
Query: 289 LHARIEQWNHKFSFDSHDPNVYASPTVCGLIEH 321
LH RIE N +FSF P+V ++ LIEH
Sbjct: 71 LHTRIEHSNGRFSF-YEQPDVEGHTSIVDLIEH 102
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 232 LVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHA 291
L L+++ +YWG M EA++ L+ PEGTFL+RDS+ +YL ++S + +
Sbjct: 7 LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 66
Query: 292 RIEQWNHKFSFDS---HDPNVYASPTVCGLIEHY--------------KDPTLVMFFEPM 334
RIE + KF DS + +V LI++Y ++ T+ ++
Sbjct: 67 RIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLY---- 122
Query: 335 LTIPLHRNFTFPLQHICRSVICSNISYDGISQLQLPKTLKSYLKEYHYK 383
LT PL+ + LQH+CR I N I L LP LK YL+EY ++
Sbjct: 123 LTKPLYTSAP-SLQHLCRLTI--NKCTGAIWGLPLPTRLKDYLEEYKFQ 168
>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757)
Phosphopeptide
Length = 152
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 216 TQLETVVHTSVDYIHCLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEE 275
T L +S +V ++ + FYW + EA LL + P GTFL+RDS+ +
Sbjct: 8 TSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQR 67
Query: 276 YLFSVSFRKFGRSLHARIEQWNHKFSFDSHDPNVYASP---TVCGLIEHYKDP 325
+ F++S + + + RI+ FS S + P V L+ HY P
Sbjct: 68 HFFTLSVKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPP 120
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 230 HCLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSL 289
+V ++ + FYW + EA LL + P GTFL+RDS+ + + F++S + +
Sbjct: 11 QLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTK 70
Query: 290 HARIEQWNHKFSFDSHDPNVYASPT---VCGLIEHYKDP 325
+ RI+ FS S + P V L+ HY P
Sbjct: 71 NLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPP 109
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYL-FSVSFRKFGRSLHARIEQWN 297
+ + +YWG + R E + L +GTFL+RD++ + + ++++ RK G + +I +
Sbjct: 7 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 66
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTFPLQHICRSVICS 357
K+ F DP ++S V LI HY++ +L + P L + L +P+ + +
Sbjct: 67 GKYGFS--DPLTFSS--VVELINHYRNESLAQ-YNPKLDVKL----LYPVSKYQQDQVVK 117
Query: 358 NISYDGISQLQLPKTLKSYLKEYHYKQRHY 387
+ + + K L Y ++ K R Y
Sbjct: 118 EDNIEAVG-----KKLHEYNTQFQEKSREY 142
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYL-FSVSFRKFGRSLHARIEQWN 297
+ +YWG + R E + L +GTFL+RD++ + + ++++ RK G + +I +
Sbjct: 7 LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 66
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTFPLQHICRSVICS 357
K+ F DP ++S V LI HY++ +L + P L + L +P+ + +
Sbjct: 67 GKYGFS--DPLTFSS--VVELINHYRNESLAQ-YNPKLDVKL----LYPVSKYQQDQVVK 117
Query: 358 NISYDGISQLQLPKTLKSYLKEYHYKQRHY 387
+ + + K L Y ++ K R Y
Sbjct: 118 EDNIEAVG-----KKLHEYNTQFQEKSREY 142
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEY-LFSVSFRKFGRSLHARIEQWN 297
+ + +YWG + R E + L +GTFL+RD++ + + ++++ RK G + +I +
Sbjct: 8 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 67
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPL 339
K+ F DP ++S V LI HY++ +L + P L + L
Sbjct: 68 GKYGFS--DPLTFSS--VVELINHYRNESLAQ-YNPKLDVKL 104
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEY-LFSVSFRKFGRSLHARIEQWNHKFSF 302
+YWG + R E + L +GTFL+RD++ + + ++++ RK G + +I + K+ F
Sbjct: 13 WYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGF 72
Query: 303 DSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPL 339
DP + S V LI HY++ +L + P L + L
Sbjct: 73 S--DPLTFNS--VVELINHYRNESLAQ-YNPKLDVKL 104
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEY-LFSVSFRKFGRSLHARIEQWN 297
+ +YWG + R E + L +GTFL+RD++ + + ++++ RK G + +I +
Sbjct: 1 LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPL 339
K+ F DP + S V LI HY++ +L + P L + L
Sbjct: 61 GKYGFS--DPLTFNS--VVELINHYRNESLAQ-YNPKLDVKL 97
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEY-LFSVSFRKFGRSLHARIEQWNHKFSF 302
+YWG + R E + L +GTFL+RD++ + + ++++ RK G + +I + K+ F
Sbjct: 13 WYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGF 72
Query: 303 -DSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPL 339
DS N +V LI HY++ +L + P L + L
Sbjct: 73 SDSLTFN-----SVVELINHYRNESLAQ-YNPKLDVKL 104
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 17 SWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRI 67
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQE--EYLFSVS 281
S+YWG++ R EA LL+ G FL+RDS+ +Y+ SVS
Sbjct: 11 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVS 51
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQE--EYLFSVS 281
S+YWG++ R EA LL+ G FL+RDS+ +Y+ SVS
Sbjct: 1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVS 41
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 242 CSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQE--EYLFSVS 281
S+YWG++ R EA LL+ G FL+RDS+ +Y+ SVS
Sbjct: 11 SSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVS 52
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 17 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 67
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 242 CSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQE--EYLFSVS 281
S+YWG++ R EA LL+ G FL+RDS+ +Y+ SVS
Sbjct: 13 SSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVS 54
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 244 FYWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSF 302
+Y+GK+ R++AE L E EG FL+RDS FSVS + G++ H +++ +
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 66
Query: 303 DSHDPNVYASPTVCGLIEHYK 323
+ T+ L+EHYK
Sbjct: 67 GQRKFS-----TMEELVEHYK 82
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 20/88 (22%)
Query: 244 FYWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ------- 295
+Y+GK+ R++AE L E EG FL+RDS FSVS + G++ H +++
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETVYCI 62
Query: 296 WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
KFS T+ L+EHYK
Sbjct: 63 GQRKFS------------TMEELVEHYK 78
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 242 CSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQE--EYLFSVS 281
S+YWG++ R EA LL+ G FL+RDS+ +Y+ SVS
Sbjct: 11 SSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVS 52
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSF 302
++Y GK++R +AE++L +GTFL+R+S+Q ++ S G + H I + F F
Sbjct: 195 TWYVGKINRTQAEEMLSGKRDGTFLIRESSQRG-CYACSVVVDGDTKHCVIYRTATGFGF 253
Query: 303 DSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLH 340
+ N+Y S + L+ HY+ +LV + + H
Sbjct: 254 -AEPYNLYGS--LKELVLHYQHASLVQHNDALTVTLAH 288
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 6 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 56
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide
From Translocated Intimin Receptor (Tir) Of Epec
Length = 102
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 244 FYWGKMDRYEAE-KLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSF 302
+Y+G + R++AE L E EG FL+RDS FSVS + G++ H +++ ++ +
Sbjct: 7 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCI 66
Query: 303 DSHDPNVYASPTVCGLIEHYK 323
+ T+ L+EHYK
Sbjct: 67 GQRRFH-----TMDELVEHYK 82
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 71 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 121
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The
Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
Length = 98
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 244 FYWGKMDRYEAE-KLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSF 302
+Y+G + R++AE L E EG FL+RDS FSVS + G++ H +++ ++ +
Sbjct: 3 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCI 62
Query: 303 DSHDPNVYASPTVCGLIEHYK 323
+ T+ L+EHYK
Sbjct: 63 GQRRFH-----TMDELVEHYK 78
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2
Domain Of C-Abl
Length = 109
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 10 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 60
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 145 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 195
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
I + +Y+GK+ R +AE+ L S+ P GTFL+R+S + +S+S R +
Sbjct: 2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDW 50
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 106 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 156
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
S+Y G + R AE LL S G+FL+R+S S+S R GR H RI
Sbjct: 103 SWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRI 153
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
V + I + +Y+GK+ R +AE+ L S+ P GTFL+R+S + +S+S R +
Sbjct: 57 VAPVDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDW 111
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 251 RYEAEKLLESW------PEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
R AEKLL+ + +GTFL+R+S +++SF + GR H RI
Sbjct: 32 RTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKY 91
Query: 305 HDPNVYASPTVCGLIEHYKDPTL-VMFFEPMLTIPL 339
+ + ++ LI+HY++ L FE LT P+
Sbjct: 92 YLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPV 127
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
V + I + +Y+GK+ R +AE+ L S+ P GTFL+R+S + +S+S R +
Sbjct: 58 VAPVDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDW 112
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
+ I + +Y+GK+ R E+E+LL + P GTFL+R+S + +S+S F
Sbjct: 1 MDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDF 52
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
++D++ +Y G M+R AE +L + +GTFL+R ++ F++S + H +I
Sbjct: 3 MQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKI 60
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 238 DITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI---E 294
D T+ ++ G M+R + + LL+S GT+L+R+ E F++S + H ++ +
Sbjct: 18 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 77
Query: 295 QWNHKFSFDSHDPNVYASPTVCGLIEHYK 323
W H D ++ L+E+Y+
Sbjct: 78 NWIHITEAKKFD-------SLLELVEYYQ 99
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 238 DITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI---E 294
D T+ ++ G M+R + + LL+S GT+L+R+ E F++S + H ++ +
Sbjct: 12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 71
Query: 295 QWNH 298
W H
Sbjct: 72 NWIH 75
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
+ I + +Y+GK+ R E+E+LL + P GTFL+R+S + +++S F
Sbjct: 3 MDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDF 54
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHA 291
VP+ S +Y+ ++ R EAE +L P +G FL+R + ++++FR G+ H
Sbjct: 10 VPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDS-YAITFRARGKVKHC 68
Query: 292 RIEQWNHKF 300
RI + F
Sbjct: 69 RINRDGRHF 77
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDS--AQEEYLFSVS 281
I + +Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVS 48
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
++ GK+ R +AE+LL G FL+R+S +++ G+ H RI K S D
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 304 SHDPNVYASPTVCGLIEHY 322
VY + L+EHY
Sbjct: 70 E---EVYFE-NLMQLVEHY 84
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
++ GK+ R +AE+LL G FL+R+S +++ G+ H RI K S D
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 304 SHDPNVYASPTVCGLIEHY 322
VY + L+EHY
Sbjct: 70 EE---VYFE-NLMQLVEHY 84
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDS--AQEEYLFSVS 281
+ I + +Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 1 MDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVS 50
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDS--AQEEYLFSVS 281
I + +Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVS 48
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 244 FYWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRS 288
+Y+GK+ R E+E+LL P GTFL+R+S + + +S F +
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANA 50
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHA 291
VP S +Y + R +AE +L P +G FL+R E +++SFR G+ H
Sbjct: 113 VPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHC 171
Query: 292 RIEQ 295
R++Q
Sbjct: 172 RVQQ 175
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 247 GKMDRYEAEKLLESW------PEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKF 300
G+ R+ AE+LL + P+G+FL+R+S +++SF + G+ H RI
Sbjct: 14 GRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQ--- 70
Query: 301 SFDSHDPNVYASPTVC-----GLIEHYKD-PTLVMFFEPMLTIPL 339
D+ P + + + LI HY+ P FE L+ P+
Sbjct: 71 --DAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPV 113
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHA 291
VP S +Y + R +AE +L P +G FL+R E +++SFR G+ H
Sbjct: 113 VPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHC 171
Query: 292 RIEQ 295
R++Q
Sbjct: 172 RVQQ 175
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 247 GKMDRYEAEKLLESW------PEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKF 300
G+ R+ AE+LL + P+G+FL+R+S +++SF + G+ H RI
Sbjct: 14 GRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQ--- 70
Query: 301 SFDSHDPNVYASPTVC-----GLIEHYKD-PTLVMFFEPMLTIPL 339
D+ P + + + LI HY+ P FE L+ P+
Sbjct: 71 --DAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPV 113
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHA 291
VP S +Y + R +AE +L P +G FL+R E +++SFR G+ H
Sbjct: 113 VPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHC 171
Query: 292 RIEQ 295
R++Q
Sbjct: 172 RVQQ 175
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 247 GKMDRYEAEKLLESW------PEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKF 300
G+ R+ AE+LL + P+G+FL+R+S +++SF + G+ H RI
Sbjct: 14 GRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQ--- 70
Query: 301 SFDSHDPNVYASPTVC-----GLIEHYKD-PTLVMFFEPMLTIPL 339
D+ P + + + LI HY+ P FE L+ P+
Sbjct: 71 --DAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPV 113
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 237 KDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFR 283
+D++ +Y G M+R AE +L + +GTFL+R ++ F++S +
Sbjct: 21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIK 67
>pdb|2EL8|A Chain A, Solution Structure Of The Human Stap2 Sh2 Domain
Length = 118
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 248 KMDRYEAEKLLESWPE-GTFLLRDSAQEEYLFSVSFRKFGRSLHA----RIEQWNHKFSF 302
K+ R EA+ LLE +PE G LLR S SV+ R+ H ++++ K+
Sbjct: 27 KVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVI 86
Query: 303 DSHDP 307
D P
Sbjct: 87 DVEQP 91
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
I + +Y+GK+ R E+E+LL + P GTFL+R+S + + +S F
Sbjct: 145 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDF 193
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal Structure
At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 247 GKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDSHD 306
G +R +AE LL +GTFL+R+S+++ ++ S G H I + + F +
Sbjct: 15 GSSNRNKAENLLRGKRDGTFLVRESSKQG-CYACSVVVDGEVKHCVINKTATGYGF-AEP 72
Query: 307 PNVYASPTVCGLIEHYKDPTLV 328
N+Y+S + L+ HY+ +LV
Sbjct: 73 YNLYSS--LKELVLHYQHTSLV 92
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85
Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase:
An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 247 GKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDSHD 306
G +R +AE LL +GTFL+R+S+++ ++ S G H I + + F +
Sbjct: 14 GSSNRNKAENLLRGKRDGTFLVRESSKQG-CYACSVVVDGEVKHCVINKTATGYGF-AEP 71
Query: 307 PNVYASPTVCGLIEHYKDPTLV 328
N+Y+S + L+ HY+ +LV
Sbjct: 72 YNLYSS--LKELVLHYQHTSLV 91
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 247 GKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDSHD 306
G +R +AE LL +GTFL+R+S+++ ++ S G H I + + F +
Sbjct: 15 GSSNRNKAENLLRGKRDGTFLVRESSKQG-CYACSVVVDGEVKHCVINKTATGYGF-AEP 72
Query: 307 PNVYASPTVCGLIEHYKDPTLV 328
N+Y+S + L+ HY+ +LV
Sbjct: 73 YNLYSS--LKELVLHYQHTSLV 92
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
I + +Y+GK+ R E+E+LL + P GTFL+R+S + + +S F
Sbjct: 62 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDF 110
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
I + +Y+GK+ R E+E+LL + P GTFL+R+S + + +S F
Sbjct: 62 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDF 110
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 243 SFYWGKMDRYEAEKLLESWPE---GTFLLRDSAQ-EEYLFSVSFRKFGRSL-HARIEQWN 297
SFY+ M R EA KLL P+ GTFL+RDS++ EY +V G ++ H IE+
Sbjct: 42 SFYFPGMSREEAHKLLGE-PQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGE 100
Query: 298 HKFSFDSHDPNVYAS---PTVCGLIEHYK 323
K + A+ P + L+ H+K
Sbjct: 101 PKEDGTAAAGVKIANQSFPDIPALLNHFK 129
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 239 ITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKF 285
I + +Y+GK+ R E+E+LL + P GTFL+R+S + + +S F
Sbjct: 62 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDF 110
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain With
Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVS 46
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 6 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVS 47
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVS 46
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVS 45
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 241 SCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ 295
S +Y + R +AE +L P +G FL+R E +++SFR G+ H R++Q
Sbjct: 8 SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRVQQ 62
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
++ GK+ R +AE+LL G FL+R+S +++ G+ H RI K S D
Sbjct: 82 WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSID 141
Query: 304 SHDPNVYASPTVCGLIEHY 322
VY + L+EHY
Sbjct: 142 EE---VYFE-NLMQLVEHY 156
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVS 45
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDS 271
++ G + R +AE LLES P G+FL+R S
Sbjct: 18 WFHGAISREDAENLLESQPLGSFLIRVS 45
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRD--------------SAQEEYLFSVSFRKFGRSL 289
++ GK+ R EAE LL+ G FL+R+ S Q ++L V R+
Sbjct: 9 WFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTK 66
Query: 290 HARIEQWNHKFSF--DSHDPNVYASPTVC 316
R E +H S+ D+H P + A +C
Sbjct: 67 DHRFESVSHLISYHMDNHLPIISAGSELC 95
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 239 ITSCSFYWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKF 285
I + +Y+GK+ R E+E+LL P GTFL+R+S + + +S F
Sbjct: 63 IQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDF 111
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 31.6 bits (70), Expect = 0.90, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRD--------------SAQEEYLFSVSFRKFGRSL 289
++ GK+ R EAE LL+ G FL+R+ S Q ++L V R+
Sbjct: 9 WFHGKLSRREAEALLQL--NGDFLVRESTTTPGQYVLTGSQSGQPKHLLLVDPEGVVRTK 66
Query: 290 HARIEQWNHKFSF--DSHDPNVYASPTVC 316
R E +H S+ D+H P + A +C
Sbjct: 67 DHRFESVSHLISYHMDNHLPIISAGSELC 95
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 242 CSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQ--EEYLFSVS 281
++Y G + R EA+ L+ G FL+RDS+ +Y+ SVS
Sbjct: 12 SAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVS 53
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide
S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E+LL + P GTFL+R+S + Y SVS
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVS 46
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 242 CSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQ--EEYLFSVS 281
++Y G + R EA+ L+ G FL+RDS+ +Y+ SVS
Sbjct: 12 SAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVS 53
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E LL + P GTFL+R+S + Y SVS
Sbjct: 6 WYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVS 47
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 243 SFYWGKMDRYEAEKLLESWPE---GTFLLRDSAQ-EEYLFSVSFRKFGRSL-HARIEQWN 297
SFY+ M R EA KLL P+ GTFL+RDS++ EY +V G ++ H IE+
Sbjct: 13 SFYFPGMSREEAHKLLGE-PQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGE 71
Query: 298 HKFSFDSHDPNVYAS---PTVCGLIEHYK 323
K + A+ P + L+ H+K
Sbjct: 72 PKEDGTAAAGVKIANQSFPDIPALLNHFK 100
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDS--AQEEYLFSVS 281
+Y+GK+ R E+E LL + P GTFL+R+S + Y SVS
Sbjct: 6 WYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVS 47
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
+ G + R +A++LL EG ++LR+S ++ ++++ R ++L+ R+ F +
Sbjct: 58 FHGIISREQADELL-GGVEGAYILRESQRQPGCYTLALRFGNQTLNYRLFHDGKHFVGEK 116
Query: 305 HDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTF 345
+++ T GLI Y + + M T P++ + +
Sbjct: 117 RFESIHDLVT-DGLITLYIETKAAEYISKMTTNPIYEHIGY 156
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQ--EEYLFSVS 281
++Y G + R EA+ L+ G FL+RDS+ +Y+ SVS
Sbjct: 20 AWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVS 60
>pdb|3HIQ|A Chain A, Crystal Structure Of Saporin-L1 Mutant (Y73a) From
Saponaria Officinalis
pdb|3HIQ|B Chain B, Crystal Structure Of Saporin-L1 Mutant (Y73a) From
Saponaria Officinalis
Length = 345
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 100 KNNWVLKFSCARSKNNSVDTSPCVCTAY 127
+NNW L A++ NN V +P V T+Y
Sbjct: 292 ENNWGLLSRAAKTANNGVFQTPLVLTSY 319
>pdb|3HIS|A Chain A, Crystal Structure Of Saporin-L1 From Saponaria Officinalis
pdb|3HIS|B Chain B, Crystal Structure Of Saporin-L1 From Saponaria Officinalis
pdb|3HIT|A Chain A, Crystal Structure Of Saporin-L1 In Complex With The
Dinucleotide Inhibitor, A Transition State Analogue
pdb|3HIT|B Chain B, Crystal Structure Of Saporin-L1 In Complex With The
Dinucleotide Inhibitor, A Transition State Analogue
pdb|3HIV|A Chain A, Crystal Structure Of Saporin-L1 In Complex With The
Trinucleotide Inhibitor, A Transition State Analogue
pdb|3HIV|B Chain B, Crystal Structure Of Saporin-L1 In Complex With The
Trinucleotide Inhibitor, A Transition State Analogue
pdb|3HIW|A Chain A, Crystal Structure Of Saporin-L1 In Complex With The Cyclic
Tetranucleotide Inhibitor, A Transition State Analogue
pdb|3HIW|B Chain B, Crystal Structure Of Saporin-L1 In Complex With The Cyclic
Tetranucleotide Inhibitor, A Transition State Analogue
Length = 259
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 100 KNNWVLKFSCARSKNNSVDTSPCVCTAY 127
+NNW L A++ NN V +P V T+Y
Sbjct: 206 ENNWGLLSRAAKTANNGVFQTPLVLTSY 233
>pdb|2YX0|A Chain A, Crystal Structure Of P. Horikoshii Tyw1
Length = 342
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 241 SCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-WN-- 297
+C F W M+ + +L + W + F++ +S + + + ++ + + E+ WN
Sbjct: 84 NCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPT 143
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIP 338
H S +P +Y P + L+E + F TIP
Sbjct: 144 HAAISLSGEPMLY--PYMGDLVEEFHKRGFTTFIVTNGTIP 182
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ 295
+K + +Y G + R EA++LL+ +G FL+R+S + + +S G+ H I+
Sbjct: 11 MKPLAEQDWYHGAIPRIEAQELLKK--QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQY 68
Query: 296 WNHKFSFD 303
++ + F+
Sbjct: 69 VDNMYRFE 76
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDSAQE--EYLFSVSFRKFGRS-LHARIEQWNHKF 300
++ GK+ EA + L+ +G FL+R+SA+ +Y+ VS FGR +H R+ +
Sbjct: 6 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVS---FGRDVIHYRVLHRDGHL 62
Query: 301 SFD 303
+ D
Sbjct: 63 TID 65
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 244 FYWGKMDRYEAEKLLESWPEGTFLLRDSAQE--EYLFSVSFRKFGRS-LHARIEQWNHKF 300
++ GK+ EA + L+ +G FL+R+SA+ +Y+ VS FGR +H R+ +
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVS---FGRDVIHYRVLHRDGHL 63
Query: 301 SFD 303
+ D
Sbjct: 64 TID 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,684,428
Number of Sequences: 62578
Number of extensions: 464789
Number of successful extensions: 958
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 88
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)