RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6389
(395 letters)
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 220 bits (562), Expect = 3e-71
Identities = 103/166 (62%), Positives = 126/166 (75%)
Query: 220 TVVHTSVDYIHCLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFS 279
+ ++ + LVPDL I + YWG MD+Y AE LLE PEGTFLLRDSAQE+YLFS
Sbjct: 12 DLGTENLYFQSMLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFS 71
Query: 280 VSFRKFGRSLHARIEQWNHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPL 339
VSFR++ RSLHARIEQWNH FSFD+HDP V+ SP + GL+EHYKDP+ MFFEP+L+ PL
Sbjct: 72 VSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPL 131
Query: 340 HRNFTFPLQHICRSVICSNISYDGISQLQLPKTLKSYLKEYHYKQR 385
R F F LQHICR+VIC+ +YDGI L +P ++K YLKEYHYK +
Sbjct: 132 IRTFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEYHYKSK 177
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 183 bits (466), Expect = 5e-57
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 231 CLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLH 290
L L+++ +YWG M EA++ L+ PEGTFL+RDS+ +YL ++S + +
Sbjct: 6 RLAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTN 65
Query: 291 ARIEQWNHKFSFDS---HDPNVYASPTVCGLIEHYKDPTLVMFFEP----------MLTI 337
RIE + KF DS + +V LI++Y P LT
Sbjct: 66 LRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTK 125
Query: 338 PLHRNFTFPLQHICRSVICSNISYDGISQLQLPKTLKSYLKEYHYK 383
PL+ + LQH+CR I I L LP LK YL+EY ++
Sbjct: 126 PLYTSA-PSLQHLCRLTINK--CTGAIWGLPLPTRLKDYLEEYKFQ 168
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 143 bits (361), Expect = 1e-41
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 6/154 (3%)
Query: 222 VHTSVDYIHCLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVS 281
+ +Y +V ++ + FYW + EA LL + P GTFL+RDS+ + + F++S
Sbjct: 4 FSSKSEY-QLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLS 62
Query: 282 FRKFGRSLHARIEQWNHKFSFDSHDPNVYASP---TVCGLIEHYKDPTLVMFFEPMLTIP 338
+ + + RI+ FS S + P V L+ HY P F T P
Sbjct: 63 VKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEP 122
Query: 339 LHRN-FTFPLQHICRSVICSNIS-YDGISQLQLP 370
P Q + S Y G ++ L
Sbjct: 123 SSEVPEQPPAQALPGSTPKRAYYIYSGGEKIPLV 156
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 135 bits (342), Expect = 5e-39
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 229 IHCLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRS 288
+ L +LK + +YWG + R+EAE L + P+G+FL+RDS+ + YL S+SFR G++
Sbjct: 11 VTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKT 70
Query: 289 LHARIEQWNHKFSFDSHDPNVYASPTVCGLIEHY-KDPTLVMFFEPMLTIPLHRNFTFPL 347
LH RIE N +FSF P+V ++ LIEH D F +P + L
Sbjct: 71 LHTRIEHSNGRFSFY-EQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVRL 129
Query: 348 QH 349
+
Sbjct: 130 TN 131
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 132 bits (334), Expect = 9e-38
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 4/139 (2%)
Query: 222 VHTSVDYIHCLVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVS 281
+ +Y +V ++ + FYW + EA LL + P GTFL+RDS+ + + F++S
Sbjct: 15 FSSKSEY-QLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLS 73
Query: 282 FRKFGRSLHARIEQWNHKFSFDSHDPNVYASPT---VCGLIEHYKDPTLVMFFEPMLTIP 338
+ + + RI+ FS S + P V L+ HY P + P
Sbjct: 74 VKTQSGTKNLRIQXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYY 133
Query: 339 LHRNFTFPLQHICRSVICS 357
++ + R + +
Sbjct: 134 IYSGGEKIPLVLSRPLSSN 152
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 95.4 bits (238), Expect = 3e-24
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDS-AQEEYLFSVSFRKFGRSLHA 291
+ + + + +YWG + R E + L +GTFL+RD+ + ++++ RK G +
Sbjct: 2 MNNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLI 61
Query: 292 RIEQWNHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPM---LTIPLHR 341
+I + K+ F DP + +V LI HY++ +L + + L P+ +
Sbjct: 62 KIFHRDGKYGFS--DPLTF--SSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 100 bits (249), Expect = 1e-23
Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Query: 237 KDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDS-AQEEYLFSVSFRKFGRSLHARIEQ 295
+ + +YWG + R E + L +GTFL+RD+ + ++++ RK G + +I
Sbjct: 5 MSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFH 64
Query: 296 WNHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPM---LTIPLHRNFTFPLQHICR 352
+ K+ F +V LI HY++ +L + + L P+ + +
Sbjct: 65 RDGKYGFSDP----LTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK------YQQDQ 114
Query: 353 SVICSNISYDGISQLQLPKTLKSYLKEYHYKQRHYTQP 390
V NI G + + +EY YT+
Sbjct: 115 VVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRT 152
Score = 68.7 bits (167), Expect = 5e-13
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHAR 292
DL ++ G +R +AE LL +GTFL+R+S++ + ++ S G H
Sbjct: 292 DEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSK-QGCYACSVVVDGEVKHCV 350
Query: 293 IEQWNHKFSFDSHDPNVYAS 312
I + + F N+Y+S
Sbjct: 351 INKTATGYGFAEPY-NLYSS 369
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 76.3 bits (188), Expect = 5e-17
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 237 KDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW 296
+D++ +Y G M+R AE +L + +GTFL+R ++ F++S + H +I
Sbjct: 21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMTA 80
Query: 297 NHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFF---EPMLTIPLHR 341
+ A + L+E Y+ +L F + L P
Sbjct: 81 EGLYRITEK----KAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 71.1 bits (175), Expect = 2e-15
Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 238 DITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWN 297
D T+ ++ G M+R + + LL+S GT+L+R+ E F++S + H ++ + +
Sbjct: 12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD 71
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFE---PMLTIPLHR 341
+ + + ++ L+E+Y+ +L F+ L P
Sbjct: 72 NWIHIT--EAKKF--DSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 63.7 bits (156), Expect = 5e-13
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
+ GK+ EA + L+ +G FL+R+SA+ + + +H R+ + + D
Sbjct: 8 FHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDE 67
Query: 305 HDPNVYASPTVCGLIEHYK 323
+ ++EHY
Sbjct: 68 AVF----FCNLMDMVEHYS 82
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 64.1 bits (156), Expect = 6e-13
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 243 SFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSF 302
S+YWG++ R EA LL+ G FL+RDS+ + +S + R H I +
Sbjct: 1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPV 60
Query: 303 DSHDPNVYAS-------------PTVCGLIEHYKDPTLVMFFEPMLTIPL 339
++ L+E YK + T L
Sbjct: 61 PPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKI-------HYLDTTTL 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 6e-13
Identities = 61/404 (15%), Positives = 125/404 (30%), Gaps = 81/404 (20%)
Query: 32 NKDKVEDNEP------SCSSNDCTDEIGRIMQDKYGGSDQGLNNTPS-TSSCKH-----K 79
KV+ + + + + + ++Q D + +S+ K +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 80 KQSRTVRSSKVYSAS-------CSKKKKNNWVLK---FSCAR----SKNNSVDTSPCVCT 125
+ R + SK Y + SC + ++ V T
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNA-----KAWNAFNLSC-KILLTTRFKQV-TDFLSAA 284
Query: 126 AYKRVSDSEVNDLPDSTQSRALLPVIDFSKF---NPDDYSTEDCDER----ARIERAREI 178
+S + + ++L K+ P D E + I A I
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRLSII--AESI 337
Query: 179 AEGVDPPPGFRPKHIQIVNLPPELSMDNLTALFQCALTQLETVVHTSVDYIHCLV-PDLK 237
+G+ + + VN D LT + + +L LE + + + V P
Sbjct: 338 RDGLA-----TWDNWKHVNC------DKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSA 385
Query: 238 DITS--CSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEY-LFSVSFRKFG-----RSL 289
I + S W + + + ++ + + + + + + S+ +L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 290 HAR-IEQWNHKFSFDSHDPNVYASPTVCG-----LIEHYKDPTLVMFFEPMLTIPLHRNF 343
H ++ +N +FDS D P + + H K+ + L +F
Sbjct: 446 HRSIVDHYNIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DF 500
Query: 344 TFPLQHICRSVICSNISYDGISQLQLPKTLKSYLKEYH--YKQR 385
F Q I N S ++ LQ K K Y+ + Y++
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Score = 37.5 bits (86), Expect = 0.008
Identities = 37/280 (13%), Positives = 82/280 (29%), Gaps = 89/280 (31%)
Query: 130 VSDSEVNDLPDSTQSRALLPVIDFSKFNPDDYSTEDCDERARIERAREIAEGVDPPPGFR 189
V + + D+ D + ++ S E+ D
Sbjct: 30 VDNFDCKDVQDMPK-----SIL----------SKEEIDH--------------------- 53
Query: 190 PKHIQIVNLPPELSMDNLTALFQCALTQLETVVHTSVDYIHCLVPDLKDITSCSFY-WGK 248
I+ +S LF L++ E +V V+ + L + Y +
Sbjct: 54 -----IIMSKDAVS--GTLRLFWTLLSKQEEMVQKFVEEV--LRIN---------YKF-L 94
Query: 249 MDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVS--FRKFGRSLHARIEQWNHKFSFDSHD 306
M + E+ S + Q + L++ + F K+ S +
Sbjct: 95 MSPIKTEQRQPSMMTRMY----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 307 PNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTF------------------PLQ 348
NV + G++ K + + + L+ + F LQ
Sbjct: 151 KNV----LIDGVLGSGKT-WVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 349 HICRSVICSNISY-DGISQLQLPK-TLKSYLKEYHYKQRH 386
+ + + S D S ++L ++++ L+ + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 63.4 bits (155), Expect = 8e-13
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
+ GK+ R +AE+LL G FL+R+S +++ G+ H RI K S D
Sbjct: 11 FHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDE 70
Query: 305 HDPNVYASPTVCGLIEHYK 323
+ L+EHY
Sbjct: 71 EVY----FENLMQLVEHYT 85
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 63.1 bits (154), Expect = 1e-12
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
G +R +AE LL +GTFL+R+S+++ ++ S G H I + + F
Sbjct: 13 NVGSSNRNKAENLLRGKRDGTFLVRESSKQGC-YACSVVVDGEVKHCVINKTATGYGFAE 71
Query: 305 HDPNVYASPTVCGLIEHYKDPTLVMFFEPM---LTIPLHR 341
N+Y ++ L+ HY+ +LV + + L P++
Sbjct: 72 PY-NLY--SSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHAR 292
+K + +Y G + R EA++LL+ +G FL+R+S + + +S G+ H
Sbjct: 8 HSHMKPLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFI 65
Query: 293 IEQWNHKFSFDSHDPNVYASPTVCGLIEHYK 323
I+ ++ + F+ + LI+H+
Sbjct: 66 IQYVDNMYRFEGT-----GFSNIPQLIDHHY 91
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 62.3 bits (152), Expect = 2e-12
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 238 DITSCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW 296
+TS ++ + EAE LL + +G+FL R S F++S R+ G H +I+
Sbjct: 3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT 62
Query: 297 NHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPL 339
+ + T+ L+++Y + + + I L
Sbjct: 63 GDYYDLYGGEK----FATLAELVQYYMEHHGQLKEKNGDVIEL 101
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 60.7 bits (148), Expect = 5e-12
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
+ + R++AE LL G F++R S FS+S R H ++ + F
Sbjct: 12 FHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLW 71
Query: 305 HDPNVYASPTVCGLIEHYKDPTLVMFFEPML 335
+ P++ L+++Y+ ++ + L
Sbjct: 72 TEK----FPSLNKLVDYYRTTSISKQKQVFL 98
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 60.0 bits (146), Expect = 1e-11
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 238 DITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWN 297
+ ++ GK+ R EAE LL+ G FL+R+S + ++ + G+ H +
Sbjct: 3 QLRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPE 60
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYK---DPTLVMFFEPMLTIPLHR 341
H +V LI ++ P + E L P+ R
Sbjct: 61 GVVRTKDH-----RFESVSHLISYHMDNHLPIISAGSELCLQQPVER 102
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 60.0 bits (146), Expect = 2e-11
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
+ G + R +AE LLES P G+FL+R S +++S++ H ++ +
Sbjct: 19 FHGAISREDAENLLESQPLGSFLIRVS-HSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIP 77
Query: 305 HDPNVYASPTVCGLIEHYK 323
+ + ++ L+ ++
Sbjct: 78 GEKVAH--TSLDALVTFHQ 94
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 58.9 bits (143), Expect = 4e-11
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 237 KDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW 296
K + +Y G + R E +LL G FL+R+S Q + + +S G H I+
Sbjct: 11 KPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRES-QGKQEYVLSVLWDGLPRHFIIQSL 67
Query: 297 NHKFSFDSHDPNVYASPTVCGLIEHYK 323
++ + + P++ LI+H
Sbjct: 68 DNLYRLEGE-----GFPSIPLLIDHLL 89
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 59.5 bits (144), Expect = 4e-11
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLL-ESWPEGTFLLRDSAQE--EYLFSVSFRKFGRSL 289
++ +Y G DR AE+ L S +G+FL+R S+ + +++ R
Sbjct: 14 ADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVY 73
Query: 290 HARIEQW--NHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVM 329
+ + +++ +V ++ ++ LV+
Sbjct: 74 NIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVL 115
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 58.4 bits (142), Expect = 4e-11
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 20/87 (22%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ--------W 296
Y G + R EA+ L+ G FL+RDS+ + +S + R H I
Sbjct: 22 YMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIG 81
Query: 297 NHKFSFDSHDPNVYASPTVCGLIEHYK 323
+ +F + L+E YK
Sbjct: 82 DQEF------------DHLPALLEFYK 96
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 58.4 bits (142), Expect = 6e-11
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHA 291
VP+ S +Y+ ++ R EAE +L P +G FL+R + ++++FR G+ H
Sbjct: 10 VPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKR-EGTDSYAITFRARGKVKHC 68
Query: 292 RIEQWNHKFSFDSHDPNVYASPTVCGLIEHYK 323
RI + F + ++ L+ +Y+
Sbjct: 69 RINRDGRHFVLGTSAY----FESLVELVSYYE 96
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 56.9 bits (138), Expect = 1e-10
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 245 YWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
Y+G + R++AE L EG FL+RDS FSVS + G++ H +++ ++ +
Sbjct: 8 YYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIG 67
Query: 304 SHDPNVYASPTVCGLIEHYK 323
T+ L+EHYK
Sbjct: 68 QRR-----FHTMDELVEHYK 82
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 56.8 bits (138), Expect = 1e-10
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 23/90 (25%)
Query: 245 YWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ------- 295
++G + R EA + L++ G FL+R S + + +S R H +I +
Sbjct: 5 FFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLH 64
Query: 296 --WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
F ++ L+ +++
Sbjct: 65 LNEAVSF------------LSLPELVNYHR 82
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 56.5 bits (137), Expect = 2e-10
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 245 YWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
Y G + + E E LL + +G FL+RDS + RI + H +
Sbjct: 6 YHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRI 65
Query: 304 SHDPNVYAS--PTVCGLIEHYK 323
D + + P + L+ Y
Sbjct: 66 ETDAHTPRTIFPNLQELVSKYG 87
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 59.7 bits (144), Expect = 3e-10
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
Y GK++R +AE++L +GTFL+R+S+Q ++ S G + H I + F F
Sbjct: 197 YVGKINRTQAEEMLSGKRDGTFLIRESSQRG-CYACSVVVDGDTKHCVIYRTATGFGFAE 255
Query: 305 HDPNVYASPTVCGLIEHYKDPTLVMFFE---PMLTIPLHR 341
N+Y ++ L+ HY+ +LV + L P+
Sbjct: 256 PY-NLY--GSLKELVLHYQHASLVQHNDALTVTLAHPVRA 292
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 55.8 bits (135), Expect = 3e-10
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 239 ITSCSFYWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW- 296
+ + + Y GK+ R EKLL + +G++LLRDS ++ + G R+ Q
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60
Query: 297 NHKFSFDSHDPNVYAS-PTVCGLIEHYK 323
+S ++ + LI ++
Sbjct: 61 TGSWSAETAPGVHKRYFRKIKNLISAFQ 88
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 55.8 bits (135), Expect = 4e-10
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 245 YWGKMDRYEAEKLL---ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFS 301
+ G + R +A +L+ + G FL+R S ++F G++ H R+
Sbjct: 12 FHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQC 71
Query: 302 FDSHDPNVYASPTVCGLIEHYK 323
H ++ ++EH++
Sbjct: 72 RVQHLH----FQSIFDMLEHFR 89
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 58.4 bits (140), Expect = 5e-10
Identities = 19/71 (26%), Positives = 29/71 (40%)
Query: 238 DITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWN 297
S+YWG++ R EA LL+ G FL+RDS+ + +S + R H I
Sbjct: 9 SEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSG 68
Query: 298 HKFSFDSHDPN 308
+
Sbjct: 69 PRPPVPPSPAQ 79
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 54.9 bits (133), Expect = 5e-10
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 245 YWGKMDRYEAEKLLESW-PEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-------- 295
++GK+ R +AE++L +G FL+R+S FS+S + H ++ +
Sbjct: 6 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 65
Query: 296 WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
W KF ++ L+++++
Sbjct: 66 WVVKF------------NSLNELVDYHR 81
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 59.8 bits (145), Expect = 6e-10
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHAR 292
+ + + S+Y G + R AE LL S G+FL+R+S S+S R GR H R
Sbjct: 96 ITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYR 155
Query: 293 IEQW-NHKFSFDSHDPNVYASPTVCGLIEHYK 323
I + K S T+ L+ H+
Sbjct: 156 INTASDGKLYVSSE----SRFNTLAELVHHHS 183
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 55.9 bits (135), Expect = 6e-10
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 245 YWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
Y GK+ R EKLL + +G++LLRDS ++ + G R+ Q
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSA 66
Query: 304 SHDPNVYAS--PTVCGLIEHYK 323
P V+ + LI ++
Sbjct: 67 ETAPGVHKRYFRKIKNLISAFQ 88
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 55.4 bits (134), Expect = 7e-10
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 245 YWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNH-KFSF 302
G + R +AE+LL + +G+FL+R S +++ RI KF+
Sbjct: 13 NHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTV 72
Query: 303 DSHDPNVYAS-PTVCGLIEHYK 323
+ + + LIE YK
Sbjct: 73 QASEGVSMRFFTKLDQLIEFYK 94
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 58.0 bits (140), Expect = 8e-10
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 244 FYWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-WNHKF 300
F++G + R EAE L +G +LLR S F++S ++ H IE+ N +
Sbjct: 7 FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 66
Query: 301 SFDSHDPNVYASPTVCGLIEHYK 323
+ + + L ++
Sbjct: 67 AIAGGRTH----ASPADLCHYHS 85
Score = 44.9 bits (106), Expect = 2e-05
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 24/90 (26%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ------- 295
+ GK+ R E+E+++ S G FL+R +++ G+ LH RI++
Sbjct: 161 FHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTGKLS 219
Query: 296 --WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
KF T+ L+EHY
Sbjct: 220 IPEGKKF------------DTLWQLVEHYS 237
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 55.4 bits (134), Expect = 9e-10
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 245 YWGKMDRYEAEKLLES--WPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW-NHKFS 301
+ K+ R EA++L+ +G FL+RDS F +S + H +I +
Sbjct: 29 FHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEM 88
Query: 302 FDSHDPNVYASPTVCGLIEHYK 323
F + D + L+E Y+
Sbjct: 89 FHTLDDGHTRFTDLIQLVEFYQ 110
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 58.5 bits (140), Expect = 9e-10
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 4/125 (3%)
Query: 237 KDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW 296
++Y G + R EA+ L+ G FL+RDS+ + +S + R H I
Sbjct: 7 DSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSL 66
Query: 297 NHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTFPLQHICRSVIC 356
++ + L+E YK L +
Sbjct: 67 PNRRFKIGD----QEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAE 122
Query: 357 SNISY 361
N+ Y
Sbjct: 123 DNLEY 127
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 54.2 bits (131), Expect = 1e-09
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW-NHKFS 301
+ G++ R E+ +++ + +G FLLRDS F ++ + + +I + +
Sbjct: 8 FHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQT 67
Query: 302 FDSHDPNVYASPTVCGLIEHYK 323
F S D + L++ Y+
Sbjct: 68 FFSLDDGNTKFSDLIQLVDFYQ 89
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 54.6 bits (132), Expect = 1e-09
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 245 YWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
++GK+ R +AE++L + +G FL+R+S FS+S + H ++ + F
Sbjct: 9 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 68
Query: 304 SHDPNVYASPTVCGLIEHYK 323
++ L+++++
Sbjct: 69 WVVK----FNSLNELVDYHR 84
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 54.6 bits (132), Expect = 1e-09
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
Y G + R AE LL S G+FL+R+S S+S R GR H RI + +
Sbjct: 19 YHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVT 78
Query: 305 HDPNVYASPTVCGLIEHYK 323
+ T+ L+ H+
Sbjct: 79 AESRF---STLAELVHHHS 94
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 57.2 bits (138), Expect = 1e-09
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 244 FYWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-WNHKF 300
F++G + R EAE+ L +G FLLR + + +S R H IE+ N +
Sbjct: 8 FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 67
Query: 301 SFDSHDPNVYASPTVCGLIEHYK 323
+ + L E Y
Sbjct: 68 AIAGGKAH----CGPAELCEFYS 86
Score = 50.3 bits (120), Expect = 3e-07
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 24/151 (15%)
Query: 184 PPPGFRPKHIQIVNLPPELSMDNLTALFQCALTQLETVVHTSVDYIHCLVPDLKDITSCS 243
P + + + + + + S +
Sbjct: 101 NRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMP 160
Query: 244 FYWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ------ 295
+Y + R EAE+ L + +G FLLR +E+ +++S H I Q
Sbjct: 161 WYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAGKY 219
Query: 296 ---WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
KF T+ L+E+ K
Sbjct: 220 CIPEGTKF------------DTLWQLVEYLK 238
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNH--KF 300
+ G++ R E+++L+ + +G FL+R+S + F +S + H I +
Sbjct: 17 FHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRL 76
Query: 301 SFDSHDPNVYASPTVCGLIEHYK 323
F D + L+E ++
Sbjct: 77 YFSMDDGQTRF-TDLLQLVEFHQ 98
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 57.3 bits (137), Expect = 2e-09
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 238 DITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWN 297
S+YWG++ R EA LL+ G FL+RDS+ + +S + R H I
Sbjct: 7 SEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSG 66
Query: 298 HKFSF 302
+
Sbjct: 67 PRPPV 71
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 53.8 bits (130), Expect = 2e-09
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-WNHKFSFD 303
Y G + R AE LL S G+FL+R+S S+S R GR H RI + K
Sbjct: 8 YHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVS 67
Query: 304 SHDPNVYASPTVCGLIEHYK 323
S T+ L+ H+
Sbjct: 68 SESR----FNTLAELVHHHS 83
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 57.7 bits (140), Expect = 2e-09
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFDS 304
+ GK+ R +AE+LL G FL+R+S +++ G+ H RI K S D
Sbjct: 83 FHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDE 142
Query: 305 HDPNVYASPTVCGLIEHYK 323
+ L+EHY
Sbjct: 143 E----VYFENLMQLVEHYT 157
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 52.9 bits (127), Expect = 6e-09
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 245 YWGKMDRYEAEKLLESWPE-GTFLLRDSAQEEYLFSVSFRKFGRSL---HARIEQWNHKF 300
+ + R EA ++L+ P G +LR + +S++ R+ H ++ +
Sbjct: 18 CFYTVSRKEATEMLQKNPSLGNMILRPGSDSRN-YSITIRQEIDIPRIKHYKVMSVGQNY 76
Query: 301 SFDSHDPNVYASPTVCGLIEHYK 323
+ + P P + +I+++
Sbjct: 77 TIELEKPVTL--PNLFSVIDYFV 97
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 53.0 bits (127), Expect = 6e-09
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 17/107 (15%)
Query: 232 LVPDLKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSL-- 289
LVP D TS +Y + R +A LL+ G FL+RDS + + ++ +
Sbjct: 11 LVPRGSD-TSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSA 69
Query: 290 -------------HARIEQWNHKFSFDSHDPNVYASPTVCGLIEHYK 323
H IE Y ++ L+ +
Sbjct: 70 QPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYF-GSLSALVSQHS 115
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 52.5 bits (126), Expect = 1e-08
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 245 YWGKMD-RYEAEKLLESW------PEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI---- 293
+ K++ R AEKLL+ + +GTFL+R+S +++SF + GR H RI
Sbjct: 25 FHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTM 84
Query: 294 EQWNHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMF-FEPMLTIPLHR 341
E K+ + ++ LI+HY++ L FE LT P+
Sbjct: 85 ENGVMKYYLTDNLT----FNSIYALIQHYREAHLRCAEFELRLTDPVPN 129
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 51.5 bits (124), Expect = 1e-08
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 245 YWGKMDRYEAEKLLESWPE-GTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-------- 295
+ GK+ + EA LL + + +FL+R S +S+ FR +I
Sbjct: 19 FHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMM 78
Query: 296 WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
+ ++ +I+HY+
Sbjct: 79 GGRYY------------NSIGDIIDHYR 94
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 53.8 bits (129), Expect = 1e-08
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 228 YIHCLVPDLKDITSCSFYWGKMDRYEAEKLLESWP-EGTFLLRDSAQEEYLFSVSFRKFG 286
+ VP S +Y + R +AE +L P +G FL+R + +++SFR G
Sbjct: 108 RLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPN-SYAISFRAEG 166
Query: 287 RSLHARIEQWNHKFSFDSHDPNVYASPTVCGLIEHYK 323
+ H R++Q + ++ LI +Y+
Sbjct: 167 KIKHCRVQQEGQTVMLGNS-----EFDSLVDLISYYE 198
Score = 43.0 bits (101), Expect = 7e-05
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 244 FYWGKM-----DRYEAEKLLESW------PEGTFLLRDSAQEEYLFSVSFRKFGRSLHAR 292
++ GK+ R+ AE+LL + P+G+FL+R+S +++SF + G+ H R
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65
Query: 293 IEQ 295
I
Sbjct: 66 IHS 68
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 54.2 bits (131), Expect = 3e-08
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 232 LVPDL-KDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLH 290
++P++ K + +Y G + R E +LL G FL+R+S ++ + +S G H
Sbjct: 2 MIPEVQKPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRESQGKQE-YVLSVLWDGLPRH 58
Query: 291 ARIEQWNHKFSFDSHDPNVYASPTVCGLIEHYK 323
I+ ++ + + P++ LI+H
Sbjct: 59 FIIQSLDNLYRLEGE-----GFPSIPLLIDHLL 86
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 50.3 bits (121), Expect = 3e-08
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFR-----KFGRSLHARIEQW- 296
Y+GK+ R +AE+ L P GTFL+R+S + +S+S R K H +I +
Sbjct: 8 YFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLD 67
Query: 297 NHKFSFDSHDPNVYASPTVCGLIEHYK 323
N + + T+ L++HY
Sbjct: 68 NGGYYITTR----AQFETLQQLVQHYS 90
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 54.2 bits (130), Expect = 4e-08
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 241 SCSFYWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-WN 297
F++G + R EAE+ L +G FLLR + + +S R H IE+ N
Sbjct: 7 HLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLN 66
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHY 322
++ L E Y
Sbjct: 67 GTYAIAGGKA----HCGPAELCEFY 87
Score = 47.2 bits (112), Expect = 6e-06
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQ-WNHKFS 301
Y + R EAE+ L + +G FLLR ++ +++S H I Q K+
Sbjct: 164 YHSSLTREEAERKLYSGAQTDGKFLLRPRKEQG-TYALSLIYGKTVYHYLISQDKAGKYC 222
Query: 302 FDSHDPNVYASPTVCGLIEHYK 323
T+ L+E+ K
Sbjct: 223 IPEGTK----FDTLWQLVEYLK 240
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 49.6 bits (119), Expect = 7e-08
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 27/94 (28%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRS----LHARIEQ--- 295
++ + R +AE+ L G+FL+R+S + FS+S + H +I
Sbjct: 15 FFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDN 74
Query: 296 ------WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
F PT+ L++HY
Sbjct: 75 GGYYISPRITF------------PTLQALVQHYS 96
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 49.6 bits (119), Expect = 8e-08
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQW-NHKFS 301
++G + R +AEK L G FL+R+S ++ FS+S G H RI + F
Sbjct: 19 FFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFF 78
Query: 302 FDSHDPNVYASPTVCGLIEHYK 323
T+ + +Y
Sbjct: 79 LTRRKV----FSTLNEFVNYYT 96
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 49.2 bits (118), Expect = 8e-08
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 28/95 (29%)
Query: 245 YWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSL-----HARIEQ-- 295
++ + R +AE+ L G+FL+R+S FS+S R F ++ H +I
Sbjct: 7 FFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLD 66
Query: 296 -------WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
F P + L+ HY
Sbjct: 67 NGGFYISPRITF------------PGLHELVRHYT 89
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 49.3 bits (118), Expect = 1e-07
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 245 YWGKMDRYEAEKLLESW-PEGTFLLRDSAQE-EYLFSVSFRKFGRSL----HARIEQWNH 298
Y M R +AE+LL+ EG F++RDS++ +Y SV + G H +
Sbjct: 14 YSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQ 73
Query: 299 -KFSFDSHDPNVYASPTVCGLIEHYK 323
++ + +++ T+ LI +++
Sbjct: 74 SQYYLA--EKHLF--STIPELINYHQ 95
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 47.4 bits (113), Expect = 4e-07
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 245 YWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKFSFD 303
Y + R +AEKLL ++ EG F++RDS + ++VS + H +
Sbjct: 12 YNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETN 70
Query: 304 SHDPNVYAS-----PTVCGLIEHYK 323
Y + ++ LI++++
Sbjct: 71 DSPKRYYVAEKYVFDSIPLLIQYHQ 95
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 47.3 bits (113), Expect = 5e-07
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 245 YWGKMDRYEAEKLLESW-PEGTFLLRDSAQEEYLFSVSFRKFGRSL------HARIEQWN 297
Y + R +AE LL EG F++RDS +++S R H +I++ +
Sbjct: 19 YHRNITRNQAEHLLRQESKEGAFIVRDSRHLG-SYTISVFMGARRSTEAAIKHYQIKKND 77
Query: 298 H-KFSFDSHDPNVYASPTVCGLIEHYK 323
++ + + + ++ LI +++
Sbjct: 78 SGQWYVA--ERHAF--QSIPELIWYHQ 100
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 46.9 bits (112), Expect = 6e-07
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 245 YWGKMDRYEAEKLLESW-PEGTFLLRDSAQEEYLFSVSFRKFGRSL------HARIEQ-W 296
+ G + R ++E+LL EG F++R+S+Q +++VS + H +
Sbjct: 14 FAGNISRSQSEQLLRQKGKEGAFMVRNSSQVG-MYTVSLFSKAVNDKKGTVKHYHVHTNA 72
Query: 297 NHKFSFDSHDPNVYASPTVCGLIEHYK 323
+K + + ++ LI +++
Sbjct: 73 ENKLYLA--ENYCF--DSIPKLIHYHQ 95
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 47.8 bits (114), Expect = 3e-06
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKFGRSLH 290
V I + +Y+GK+ R E+E+LL + P GTFL+R+S + + +S F +
Sbjct: 56 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 115
Query: 291 ARIEQWNHKFSFDSHDPNVY------ASPTVCGLIEHYK 323
++ H + D + ++ L+ +Y
Sbjct: 116 LNVK---H-YKIRKLDSGGFYITSRTQFNSLQQLVAYYS 150
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 44.8 bits (105), Expect = 3e-06
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 245 YWGKMDRYEAEKLLESWPE-GTFLLRDSAQEEYLFSVSFRKFGRSL----HARIEQWNHK 299
+ K+ R EA+ LLE +PE G LLR S SV+ R+ H ++++ K
Sbjct: 24 CFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPK 83
Query: 300 FSFDSHDPNVYASPTVCGLIEHYKDPT 326
+ D P ++ ++ ++ ++ T
Sbjct: 84 YVIDVEQP--FSCTSLDAVVNYFVSHT 108
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 47.6 bits (113), Expect = 5e-06
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLESW--PEGTFLLRDSAQEEYLFSVSFRKFGRSL- 289
V I + +Y+GK+ R E+E+LL + P GTFL+R+S + + +S F +
Sbjct: 139 VAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKG 198
Query: 290 ----HARIEQW--NHKFSFDSHDPNVYASPTVCGLIEHYK 323
H +I + + ++ L+ +Y
Sbjct: 199 LNVKHYKIRKLDSGGFYITSRT-----QFNSLQQLVAYYS 233
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 45.3 bits (107), Expect = 2e-05
Identities = 12/49 (24%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 245 YWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
+ G + R A++LL EG++L+R+S ++ ++++ R ++ + R+
Sbjct: 54 FHGMISREAADQLLIV-AEGSYLIRESQRQPGTYTLALRFGSQTRNFRL 101
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 41.3 bits (96), Expect = 8e-05
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 243 SFYWGKMDRYEAEKLLESWPE------GTFLLRDSAQE-EYLFSVSFRKFGRSLHARIEQ 295
S + + E E+L ++ G + +R+S+ + + V + + RI +
Sbjct: 18 SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFE 77
Query: 296 WNHKFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIP 338
+ KF + +V ++EHY L +L P
Sbjct: 78 KDSKFYLEGEV----LFVSVGSMVEHYHTHVLPSHQSLLLRHP 116
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 42.9 bits (100), Expect = 1e-04
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 239 ITSCSFYWGKMDRYEAEKLL--ESWPEGTFLLRDS-AQEEYLFSVSFRKFGRSL-HARIE 294
SFY+ M R EA KLL GTFL+RDS EY +V G ++ H IE
Sbjct: 38 FEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIE 97
Query: 295 Q 295
+
Sbjct: 98 R 98
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 41.3 bits (96), Expect = 1e-04
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 243 SFYWGKMDRYEAEKLL--ESWPEGTFLLRDS-AQEEYLFSVSFRKFGRSL-HARIEQWNH 298
SFY+ M R EA KLL GTFL+RDS EY +V G ++ H IE+
Sbjct: 13 SFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEP 72
Query: 299 KFSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTFPLQHIC 351
K + A+ + + + + E L + +
Sbjct: 73 KEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTF 125
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 42.5 bits (100), Expect = 2e-04
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 239 ITSCSFYWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWN 297
+ S ++ + EAE LL +G+FL R S ++S R+ G H +I+ N
Sbjct: 1 MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQ--N 58
Query: 298 HKFSFDSHDPNVYASPTVCGLIEHYKD 324
+D + +A T+ L+++Y +
Sbjct: 59 TGDYYDLYGGEKFA--TLAELVQYYME 83
Score = 37.5 bits (87), Expect = 0.007
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 192 HIQIVN------LPPELSMDNLTALFQCALTQLETVVHTSVDYIHCLVP-DLKDITSCSF 244
HI+I N L L L Q + + + D I P + D TS +
Sbjct: 53 HIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERW 112
Query: 245 YWGKMDRYEAEKLLES-WPEGTFLLRDSAQ--EEYLFSVSFRKFGRSLHARIEQWNH 298
+ G + EAEKLL G+FL+R+S +++ SV + + H
Sbjct: 113 FHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTH 169
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 40.4 bits (94), Expect = 2e-04
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 28/96 (29%)
Query: 244 FYWGKMDRYEAEKLLES--WPEGTFLLRDSAQEEYLFSVSFRKFGRS-----LHARIEQ- 295
+++ + R +AE+ L + G+FL+R+S FS+S R F ++ H +I
Sbjct: 76 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNL 135
Query: 296 --------WNHKFSFDSHDPNVYASPTVCGLIEHYK 323
F P + L+ HY
Sbjct: 136 DNGGFYISPRITF------------PGLHELVRHYT 159
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 41.4 bits (97), Expect = 4e-04
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 242 CSFYWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKF 300
++ + +AE LL G+FL R S + + FS+S R + H RI+ N
Sbjct: 2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQ--NSGD 59
Query: 301 SFDSHDPNVYASPTVCGLIEHYKD 324
+D + +A T+ L+E+Y
Sbjct: 60 FYDLYGGEKFA--TLTELVEYYTQ 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-04
Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 34/137 (24%)
Query: 275 EYLFSVSFRKFGRSLHARIEQWNHKFSFDSHDPNVYAS------PTVC--------GLIE 320
E++ V + Q + F+ P PT G +
Sbjct: 17 EHVLLVP-----TASFFIASQ--LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 321 HYKDPTLVMFFEPMLTIPL---HRNFTFPLQ----HICRSVICSNISYDGISQLQLPKTL 373
+P+ V F+ +L + L + L+ H ++ + + + ++ + +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDIH---ALAAKLLQENDTTLVKTKELI 123
Query: 374 KSYLKEYHYKQRHYTQP 390
K+Y+ +R + +
Sbjct: 124 KNYITARIMAKRPFDKK 140
Score = 34.3 bits (78), Expect = 0.092
Identities = 37/211 (17%), Positives = 65/211 (30%), Gaps = 65/211 (30%)
Query: 50 DEIGRIMQDKYGGS--DQGLNNTPSTSSCKHKKQSRTVRSSKVYSASCSKKKKNNWVLKF 107
+ +D YG S D +NN + + ++ + +R + YSA + +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN--YSAMIFETIVDG----K 1700
Query: 108 SCARSKNNSVDTSPCVCTAYKRVSDSEVNDLPDSTQSRALLPVIDFSKFNPDDYSTEDCD 167
++ T S+ + TQ AL +
Sbjct: 1701 LKTEKIFKEINEHSTSYTFR---SEKGLLSATQFTQ-PALTLM----------------- 1739
Query: 168 ERARIERAREIAEGVDPPP----GFRPKHIQIVNLPPELSMDNL---TALFQCA--LTQL 218
E+A E + +G+ P G H S L AL A ++ +
Sbjct: 1740 EKAAFEDLKS--KGLIPADATFAG----H----------S---LGEYAALASLADVMS-I 1779
Query: 219 ETVVHTSV----DYIHCLVPDLKDITSCSFY 245
E++V V + VP +D S Y
Sbjct: 1780 ESLVEV-VFYRGMTMQVAVP--RDELGRSNY 1807
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 40.1 bits (93), Expect = 5e-04
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 241 SCSFYWGKMDRYEAEKLLESWPE-GTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHK 299
+++GK+ R +AE++L G FL+R+S FS+S + H ++ +
Sbjct: 57 PHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 116
Query: 300 FSFDSHDPNVYASPTVCGLIEHYKDPTLVMFFEPMLTIPLHRNFTFPLQH 349
F V ++ L+++++ ++ + L
Sbjct: 117 KYFLW----VVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQ 162
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 41.1 bits (96), Expect = 5e-04
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 242 CSFYWGKMDRYEAEKLL-ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARIEQWNHKF 300
++ + +AE LL G+FL R S + + FS+S R + H RI+ N
Sbjct: 2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQ--NSGD 59
Query: 301 SFDSHDPNVYASPTVCGLIEHYKD 324
+D + +A T+ L+E+Y
Sbjct: 60 FYDLYGGEKFA--TLTELVEYYTQ 81
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 39.6 bits (91), Expect = 0.002
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLHARI 293
+ + +G M R E L++ GTF++R S + F +++ +
Sbjct: 345 ISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKH 402
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLL--ESWPEGTFLLRDSAQEEYLFSVSFRKFGRSLH 290
V + + + +++ + R +AE+ L G+F++RDS + +S+S R +
Sbjct: 61 VARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQG 120
Query: 291 ARIEQWNHKFSFDSHDPNVY------ASPTVCGLIEHYK 323
++ H + + D + T+ L++HYK
Sbjct: 121 DTVK---H-YKIRTLDNGGFYISPRSTFSTLQELVDHYK 155
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 34.0 bits (77), Expect = 0.082
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEEYLFSVSFR 283
K + G +++ +A LL + P+GTFLLR S E +++++
Sbjct: 458 HKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIAWK 505
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 34.1 bits (77), Expect = 0.090
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDS 271
L + + G + + LL+ GTFLLR S
Sbjct: 434 LLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFS 469
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 32.5 bits (73), Expect = 0.23
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDSAQEE 275
+ + + + G + + +L + P GTFLLR S +
Sbjct: 450 ILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSK 489
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 32.6 bits (73), Expect = 0.23
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 236 LKDITSCSFYWGKMDRYEAEKLLESWPEGTFLLRDS 271
L + + G + + LL+ GTFLLR S
Sbjct: 569 LLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFS 604
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins,
cytokine signaling, growth regulati phosphoprotein, SH2
domain; NMR {Mus musculus}
Length = 40
Score = 28.9 bits (64), Expect = 0.28
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 347 LQHICRSVICSNISYDGISQL-QLPKTLKSYLKEY 380
LQH+CR + N D ++ QLP ++ +L +Y
Sbjct: 4 LQHLCRKTV--NGHLDSYEKVTQLPGPIREFLDQY 36
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam
antibiotic, oxygenase, penicillin biosynthesis,
oxidoreductase, iron; HET: ASV; 1.15A {Emericella
nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A*
1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A*
1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A*
1w06_A* 1w3v_A* 1w3x_A* ...
Length = 331
Score = 29.6 bits (67), Expect = 1.6
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 21/80 (26%)
Query: 141 STQSRALLPVIDFSKFNPDDYSTEDCDERARIERAREI---AEGVDPPPGFRPKHIQIVN 197
+ S+A +P ID S +D + R+ A++I + GF VN
Sbjct: 2 GSVSKANVPKIDVSPL-----FGDDQAAKMRV--AQQIDAASRDT----GF----FYAVN 46
Query: 198 --LPPELSMDNLTALFQCAL 215
+ + + T F ++
Sbjct: 47 HGINVQR-LSQKTKEFHMSI 65
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 28.8 bits (64), Expect = 3.1
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 124 CTAYKRVSDSEVNDLPDSTQSRALLPVIDFSKFNPD--DYSTEDCDERARIERAREIAEG 181
C ++ + + L T+ +LP + NPD + + + R A G
Sbjct: 85 CEEFRN-RNQRIVQLIQDTRIH-ILPSM-----NPDGYEVAAAQGPNKPGYLVGRNNANG 137
Query: 182 VDP 184
VD
Sbjct: 138 VDL 140
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 28.1 bits (63), Expect = 3.7
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 200 PELSMDNLTALFQCALTQLETVVHTSVDYIHCLVPDLKDITSCSFYWGKMDR-YEAEKLL 258
PE + LT +FQ A + E + S++ I KD + +F + +E E L
Sbjct: 90 PEHKFEGLTQIFQKAY-EHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLF 148
Query: 259 E 259
+
Sbjct: 149 K 149
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing,
transcription, RNA binding protein, mRNA processing; NMR
{Homo sapiens} PDB: 2yh1_A
Length = 198
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 158 PDDYSTEDCDERARIERAREIAEGVDPPPGFRPKHIQIVNLPPELSMDNLTALFQ 212
P DY + V P + + I LP L+ D + L
Sbjct: 85 PHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK---LFIGGLPNYLNDDQVKELLT 136
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 28.3 bits (64), Expect = 4.0
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 168 ERAR--IERAREIAEGVDPPPGFRPKH-----IQIVNLPPEL 202
AR A+ +A+G++ G I L +
Sbjct: 264 RNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDSAM 305
>3ezj_A General secretion pathway protein GSPD; general secretory pathway,
secretin, single chain antibody, transport, immune
system, complex; 2.80A {Escherichia coli}
Length = 241
Score = 28.1 bits (62), Expect = 4.3
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 167 DERARIERAREIAEGVDPPPGFRPKHIQIVNLPPELSMDNLTALFQ 212
+ +ER E+ + VD + I + N L +L +
Sbjct: 151 GRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTK 196
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 26.3 bits (58), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 233 VPDLKDITSCSFYWGKMDRYEAEKLLES 260
V I + +Y+GKM R +AE S
Sbjct: 81 VVPADSIQAEEWYFGKMGRKDAESGPSS 108
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase,
2-oxoglutarate, oxidoreduc antibiotics, merohedral
twinning; 1.30A {Streptomyces clavuligerus} SCOP:
b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A*
1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A*
1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Length = 311
Score = 27.3 bits (61), Expect = 9.3
Identities = 6/66 (9%), Positives = 16/66 (24%), Gaps = 23/66 (34%)
Query: 148 LPVIDFSKFNPDDYSTEDCDERARIERA-REIAEGVDPPPGFRPKHIQIVN--LPPELSM 204
+P ++ + + R R+ G + + L +
Sbjct: 5 VPTFSLAEL-------QQGLHQDEFRRCLRDK--------GL----FYLTDCGLTDTE-L 44
Query: 205 DNLTAL 210
+ L
Sbjct: 45 KSAKDL 50
>1bgk_A BGK; neurotoxin, potassium channel inhibitor; NMR {Bunodosoma
granulifera} SCOP: g.19.1.1
Length = 37
Score = 24.3 bits (52), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 74 SSCKHKKQSRTVRSSKVYSASCSK 97
++C+H K R+S+ Y A+C+K
Sbjct: 9 TACRHAKSLGNCRTSQKYRANCAK 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.402
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,942,403
Number of extensions: 338415
Number of successful extensions: 980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 100
Length of query: 395
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 299
Effective length of database: 4,021,377
Effective search space: 1202391723
Effective search space used: 1202391723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)