BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy639
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A69|C Chain C, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|D Chain D, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 94
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 9 LSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQK 68
L+VIPP++ D +FIN NG + D +DR MW++QE+E FR+K++ H K
Sbjct: 6 LAVIPPMLYDADQ--QRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPK 63
Query: 69 NFGLIASFLERRTPSDCVEYYYLSKKRENYK 99
NFGLIASFLER+T ++CV YYYL+KK ENYK
Sbjct: 64 NFGLIASFLERKTVAECVLYYYLTKKNENYK 94
>pdb|1XC5|A Chain A, Solution Structure Of The Smrt Deacetylase Activation
Domain
Length = 71
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 32 NGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91
NG + D +DR MW++QE+E FR+K++ H KNFGLIASFLER+T ++CV YYYL
Sbjct: 4 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 63
Query: 92 SKKRENYK 99
+KK ENYK
Sbjct: 64 TKKNENYK 71
>pdb|2EQR|A Chain A, Solution Structure Of The First Sant Domain From Human
Nuclear Receptor Corepressor 1
Length = 61
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 44 DRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKREN 97
DR +WT E+E+F+DK+I H KNFGLIAS+LER++ DCV YYYL+KK EN
Sbjct: 8 DRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNEN 61
>pdb|2LTP|A Chain A, Solution Structure Of The Sant2 Domain Of The Human
Nuclear Receptor Corepressor 2 (Ncor2), Northeast
Structural Genomics Consortium (Nesg) Target Id Hr4636e
Length = 89
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLM 109
WT++E + + H +N+ IA + +T S C +Y+ KKR+N + + + M
Sbjct: 19 WTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKM 77
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K F I L ++ + V++YY KK
Sbjct: 192 WTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 235
>pdb|2CRG|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Mouse Mta3 Protein
Length = 70
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY---KRAIPTNN 106
W+ E +F + + K+F I FL ++ + +EYYY+ K + Y KR+ P++
Sbjct: 11 WSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRSGPSSG 70
>pdb|4DWN|A Chain A, Crystal Structure Of Human Bincard Card
pdb|4DWN|B Chain B, Crystal Structure Of Human Bincard Card
Length = 100
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 28 FINNNGRVTDYEAE----MRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPS 83
F+ +GR+++ + + +R ++ T +E E FR+ + + S L+R
Sbjct: 17 FLTGHGRLSEQQVDRIILQLNRYYPQILTNKEAEKFRNPKASLRVRLXDLLSHLQRSGER 76
Query: 84 DCVEYY 89
DC E+Y
Sbjct: 77 DCQEFY 82
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 35 VTDYEAEMRDRAQAKMWTQQEREVFRDK 62
T Y A ++D A +K+W +Q+ + F K
Sbjct: 544 ATPYPALIKDTAMSKLWFKQDDKFFLPK 571
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 35 VTDYEAEMRDRAQAKMWTQQEREVFRDK 62
T Y A ++D A +K+W +Q+ + F K
Sbjct: 544 ATPYPALIKDTAMSKLWFKQDDKFFLPK 571
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,601,249
Number of Sequences: 62578
Number of extensions: 133180
Number of successful extensions: 223
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 19
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)