BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy639
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
+++ L+VIPP++ D +FIN NG + D +DR MW++QE+E FR+K
Sbjct: 386 EKQMRQLAVIPPMLYDADQQRI--KFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREK 443
Query: 63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
++ H KNFGLIASFLER+T ++CV YYYL+KK ENYK +
Sbjct: 444 FMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 483
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNN 106
++ WT++E E + + H +N+ IA + +T S C +Y+ KKR+N + +
Sbjct: 611 ESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHK 670
Query: 107 MLMKE 111
+ M++
Sbjct: 671 LKMEK 675
>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3
Length = 2472
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 9 LSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQK 68
L+VIPP++ D +FIN NG + D +DR MW++QER+ FR+K++ H K
Sbjct: 392 LAVIPPMLYDADQQRI--KFINMNGLMDDPMKVYKDRQVTNMWSEQERDTFREKFMQHPK 449
Query: 69 NFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
NFGLIASFLER+T ++CV YYYL+KK ENYK +
Sbjct: 450 NFGLIASFLERKTVAECVLYYYLTKKNENYKSLV 483
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNN 106
++ WT++E E + + H +N+ IA + +T S C +Y+ KKR+N + +
Sbjct: 607 ESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHK 666
Query: 107 MLMKE 111
+ M++
Sbjct: 667 LKMEK 671
>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
Length = 2453
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
+++ LSVIPP++ D +FIN NG + D +DR +WT E+E+F+DK
Sbjct: 394 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 451
Query: 63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
+I H KNFGLIAS+LER++ DCV YYYL+KK ENYK +
Sbjct: 452 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALV 491
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMK 110
WT++E EV + + H +N+ IA + ++ + C +Y+ NYKR +N+L +
Sbjct: 627 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYF------NYKRRHNLDNLLQQ 680
>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2
Length = 2440
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
+++ LSVIPP++ D +FIN NG + D +DR +WT E+E+F+DK
Sbjct: 394 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDK 451
Query: 63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
+I H KNFGLIAS+LER++ DCV YYYL+KK ENYK +
Sbjct: 452 FIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALV 491
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMK 110
WT++E EV + + H +N+ IA + ++ + C +Y+ NYKR +N+L +
Sbjct: 628 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYF------NYKRRHNLDNLLQQ 681
>sp|Q4KKX4|NCOR1_XENTR Nuclear receptor corepressor 1 OS=Xenopus tropicalis GN=ncor1 PE=2
SV=1
Length = 2494
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 2/100 (2%)
Query: 3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
+++ LSVIPP++ D +FIN NG + D +DR +WT E+E+F++K
Sbjct: 386 EKQMRQLSVIPPMMFDAEQRRV--KFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKEK 443
Query: 63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
++ H KNFGLIAS+LER+T SDCV YYYL+KK EN+K +
Sbjct: 444 FVQHPKNFGLIASYLERKTVSDCVLYYYLTKKNENFKALV 483
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 64 IHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMK 110
+ H +N+G IA + ++ S C +Y+ NYKR +N+L +
Sbjct: 635 VEHGRNWGAIAKMVGSKSESQCKNFYF------NYKRRHNLDNLLQQ 675
>sp|Q8QG78|NCOR1_XENLA Nuclear receptor corepressor 1 OS=Xenopus laevis GN=ncor1 PE=1 SV=1
Length = 2498
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 3 DRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDK 62
+++ LSVIPP++ D +FIN NG + D +DR +WT E+E+F++K
Sbjct: 386 EKQMRQLSVIPPMMFDAEQRRV--KFINTNGLMEDPMKVYKDRQFMNVWTDHEKEIFKEK 443
Query: 63 YIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
++ H KNFGLIAS+LER+ SDCV YYYL+KK EN K +
Sbjct: 444 FVRHPKNFGLIASYLERKNVSDCVLYYYLTKKNENLKSLV 483
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 64 IHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMK 110
+ H +N+G IA + ++ S C +Y+ NYKR +N+L +
Sbjct: 632 VDHGRNWGAIAKMVGSKSESQCKNFYF------NYKRRHNLDNLLQQ 672
>sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum GN=mybP PE=3 SV=1
Length = 1448
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 6 RHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIH 65
+ +++IPP++ +IN+NG + D A+ + R +WT+ E++ F KY+
Sbjct: 1038 QQGVAIIPPMLSPEERNI---HYINHNGFIVDPIAQEKQRKSLIIWTEDEKQKFVKKYLQ 1094
Query: 66 HQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
+ K F IASF + RT D + +YY +KK N K+ +
Sbjct: 1095 YPKKFSKIASFFDNRTTEDMIVFYYNNKKTLNLKQLL 1131
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 35 VTDYEAEMRDRAQAKM-WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSK 93
+ D E +D+ + WT+ ERE+F H F LIA +++ +T + C +YY SK
Sbjct: 1348 IGDKEYNNKDKESENLRWTEHERELFNIAVQKHGTQFNLIADYVQSKTGAQCRSFYYNSK 1407
Query: 94 KR 95
++
Sbjct: 1408 RK 1409
>sp|P25357|SNT1_YEAST Probable DNA-binding protein SNT1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNT1 PE=1 SV=2
Length = 1226
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 7 HSLSVIPPIICDP--RHPFTGPRFINNNGRVTDYE--AEMRDRAQAKMWTQQEREVFRDK 62
+ + IPP+I DP +H + +F + N VTD + A + + +T E +F +
Sbjct: 628 QAAATIPPLILDPIRKHSY---KFCDVNNLVTDKKLWASRILKDASDNFTDHEHSLFLEG 684
Query: 63 YIHHQKNFGLIASFLER-RTPSDCVEYYYLSKKRENYKRAI 102
Y+ H K FG I+ ++ R+P +CV +YY +KK NYK+ +
Sbjct: 685 YLIHPKKFGKISHYMGGLRSPEECVLHYYRTKKTVNYKQLL 725
>sp|Q10369|YDBJ_SCHPO Uncharacterized protein C22E12.19 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC22E12.19 PE=4 SV=2
Length = 661
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 9 LSVIPPIICDPRHPFTGPRFINNNGR-VTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQ 67
++ IPP+I ++ N+ R VTD ++ +W +++ +F ++I H
Sbjct: 210 IATIPPMILSEEE--VKSQYFNDQSRLVTDCPKFYHFQSMPDIWNEEQHSIFVQQFILHG 267
Query: 68 KNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPT 104
K FG IA + + +CV +YYL+K+ +Y+ + +
Sbjct: 268 KKFGKIAEAVPGKNSKECVLHYYLTKRTTDYRALVAS 304
>sp|P34333|GEI8_CAEEL Gex-3-interacting protein 8 OS=Caenorhabditis elegans GN=gei-8 PE=1
SV=3
Length = 1866
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKR 100
W+ +ER +F+ + H K F + F +T SD V +YY++KK E+YK+
Sbjct: 218 WSPEERSLFKSRQADHVKIFHGLTEFFVDKTASDLVLFYYMNKKTEDYKK 267
>sp|A5PJX4|MIER2_BOVIN Mesoderm induction early response protein 2 OS=Bos taurus GN=MIER2
PE=2 SV=1
Length = 561
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
W+++ER F + H KNF LI A+ + R+ +CVEYYYL KK E Y
Sbjct: 302 WSEEERRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERY 350
>sp|Q9H0D2|ZN541_HUMAN Zinc finger protein 541 OS=Homo sapiens GN=ZNF541 PE=2 SV=2
Length = 1365
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
+ +WT E+ +F+ + H+K+F LI ++ +T + CVEYYY+ KK
Sbjct: 1181 SDVWTPIEKRLFKKAFYAHKKDFYLIHKMIQTKTVAQCVEYYYIWKK 1227
>sp|Q0GGX2|ZN541_MOUSE Zinc finger protein 541 OS=Mus musculus GN=Znf541 PE=1 SV=1
Length = 1363
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
+ +WT E+ +F+ + H+K+F LI ++ ++ + CVEYYY+ KK
Sbjct: 1172 SDIWTPMEKRLFKKAFCAHKKDFYLIHKMIQTKSVAQCVEYYYIWKK 1218
>sp|Q4R2Z8|ZN541_MACFA Zinc finger protein 541 (Fragment) OS=Macaca fascicularis GN=ZNF541
PE=2 SV=2
Length = 804
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
+ +WT E+ +F+ + H+K+F LI ++ +T + CVEYYY+ KK
Sbjct: 618 SDVWTPIEKRLFKKAFYAHKKDFYLIHKTIQTKTVAQCVEYYYIWKK 664
>sp|Q3U3N0|MIER2_MOUSE Mesoderm induction early response protein 2 OS=Mus musculus
GN=Mier2 PE=2 SV=1
Length = 541
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
W+++E F + H KNF LI A+ + R+ +CVEYYYL KK E Y
Sbjct: 301 WSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERY 349
>sp|Q8N344|MIER2_HUMAN Mesoderm induction early response protein 2 OS=Homo sapiens
GN=MIER2 PE=2 SV=2
Length = 545
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
W+++E F + H KNF LI A+ + R+ +CVEYYYL KK E Y
Sbjct: 302 WSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSERY 350
>sp|Q18919|RCOR_CAEEL REST corepressor spr-1 OS=Caenorhabditis elegans GN=spr-1 PE=1 SV=2
Length = 558
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 40 AEMRDRAQAK-MWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENY 98
AE+ R + K +WT QE +F + Y KNF I S L R+ V++YY SKKR Y
Sbjct: 186 AEVARRNELKDVWTDQEITLFENCYQIFGKNFSQIRSALCHRSLQSIVQFYYESKKRVKY 245
>sp|Q6PJG2|EMSA1_HUMAN ELM2 and SANT domain-containing protein 1 OS=Homo sapiens
GN=ELMSAN1 PE=1 SV=2
Length = 1045
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKR 100
W ER++F ++K+F L+ ++ +T + CVE+YY KK+ R
Sbjct: 833 WKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGR 882
>sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus musculus GN=Trerf1 PE=1
SV=1
Length = 1205
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
A + WT ER++F + K+F + ++ +T + CVEYYY KK
Sbjct: 891 AGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKK 939
>sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Homo sapiens GN=TRERF1 PE=1
SV=1
Length = 1200
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
A + WT ER++F + K+F + ++ +T + CVEYYY KK
Sbjct: 885 AGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKK 933
>sp|Q3UHF3|MIER3_MOUSE Mesoderm induction early response protein 3 OS=Mus musculus
GN=Mier3 PE=1 SV=2
Length = 551
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLER-RTPSDCVEYYYLSKKRENY 98
WT++E F + H K+F LI R RT ++CV +YY+ KK E Y
Sbjct: 283 WTEEECRSFEHALMLHGKDFHLIQKDKVRSRTVAECVAFYYMWKKSERY 331
>sp|Q7T105|MIER1_XENLA Mesoderm induction early response protein 1 OS=Xenopus laevis
GN=mier1 PE=2 SV=1
Length = 495
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
R + +WT++E F + K+F LI A+ + R+ +CV +YY+ KK E Y
Sbjct: 273 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERY 327
>sp|Q5UAK0|MIER1_MOUSE Mesoderm induction early response protein 1 OS=Mus musculus
GN=Mier1 PE=1 SV=2
Length = 511
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
R + +WT++E F + K+F LI A+ + R+ +CV +YY+ KK E Y
Sbjct: 281 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERY 335
>sp|Q8N108|MIER1_HUMAN Mesoderm induction early response protein 1 OS=Homo sapiens
GN=MIER1 PE=1 SV=2
Length = 512
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
R + +WT++E F + K+F LI A+ + R+ +CV +YY+ KK E Y
Sbjct: 282 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERY 336
>sp|Q5REE1|MIER1_PONAB Mesoderm induction early response protein 1 OS=Pongo abelii
GN=MIER1 PE=2 SV=2
Length = 512
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
R + +WT++E F + K+F LI A+ + R+ +CV +YY+ KK E Y
Sbjct: 282 REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERY 336
>sp|Q4R3R9|MIER3_MACFA Mesoderm induction early response protein 3 OS=Macaca fascicularis
GN=MIER3 PE=2 SV=1
Length = 550
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIA-SFLERRTPSDCVEYYYLSKKRENY 98
WT++E F + K+F LI + + RT ++CV +YY+ KK E Y
Sbjct: 282 WTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKSERY 330
>sp|Q7Z3K6|MIER3_HUMAN Mesoderm induction early response protein 3 OS=Homo sapiens
GN=MIER3 PE=1 SV=2
Length = 550
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIA-SFLERRTPSDCVEYYYLSKKRENY 98
WT++E F + K+F LI + + RT ++CV +YY+ KK E Y
Sbjct: 282 WTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKKSERY 330
>sp|Q5ZKT9|MIER1_CHICK Mesoderm induction early response protein 1 OS=Gallus gallus
GN=MIER1 PE=2 SV=1
Length = 513
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
R + +WT++E F + K+F +I A+ + R+ +CV +YY+ KK E Y
Sbjct: 284 REELSVWTEEECRNFEQGLKVYGKDFHVIQANKVRTRSVGECVAFYYMWKKSERY 338
>sp|Q6PGA0|RCOR3_MOUSE REST corepressor 3 OS=Mus musculus GN=Rcor3 PE=2 SV=2
Length = 451
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K+F I L +T + V+YYY KK
Sbjct: 145 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 188
>sp|Q9P2K3|RCOR3_HUMAN REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2
Length = 495
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K+F I L +T + V+YYY KK
Sbjct: 89 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 132
>sp|Q5ZJ40|RCOR3_CHICK REST corepressor 3 OS=Gallus gallus GN=RCOR3 PE=2 SV=1
Length = 378
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K+F I L +T + V+YYY KK
Sbjct: 89 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 132
>sp|P28867|KPCD_MOUSE Protein kinase C delta type OS=Mus musculus GN=Prkcd PE=1 SV=3
Length = 674
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 37 DYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRE 96
D + MR +AK T R + IH+ KN IA+F + T + + ++
Sbjct: 126 DCKQSMRSEEEAKFPTMNRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKEFVWGLNKQ 185
Query: 97 NYK 99
YK
Sbjct: 186 GYK 188
>sp|Q07081|OLFM_LITCT Olfactomedin OS=Lithobates catesbeiana PE=1 SV=1
Length = 464
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 33 GRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92
G + D + +R + +M +E+++ D Y N +LE+ P VE +
Sbjct: 49 GALEDETIRLSNRVEDEMQKLEEQDIILDTYSEKIINLTRRVEYLEKLHPESLVEISFEV 108
Query: 93 KKRE--------NYKRAIPTNNMLMKETL 113
KRE + R P N + ETL
Sbjct: 109 LKREIRELEMYISAMRVKPNGNSVQVETL 137
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT ++R +F + H K F I L ++ + V++YY KK
Sbjct: 141 WTVEDRVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 184
>sp|Q6P116|RCOR2_DANRE REST corepressor 2 OS=Danio rerio GN=rcor2 PE=2 SV=1
Length = 536
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K+F I L + + V+YYY KK
Sbjct: 129 WTVEDKVLFEQAFSFHGKSFHRIQQMLPDKMITSLVKYYYSWKK 172
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 35 VTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
+T + A+ R Q WT QE E F KNF I S ++ + YYY +
Sbjct: 43 ITQFPAKKPTR-QWAAWTHQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVR 101
Query: 95 REN 97
R N
Sbjct: 102 RMN 104
>sp|P78016|PARE_MYCPN DNA topoisomerase 4 subunit B OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=parE PE=3 SV=1
Length = 635
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 38 YEAEMRDRAQAKMWTQQEREVFRDKYIH 65
Y+ E RD+ +WT+QE E +R K+ H
Sbjct: 539 YKFEGRDKKARYLWTEQELEQYRAKHSH 566
>sp|Q59E36|RCOR_DROME REST corepressor OS=Drosophila melanogaster GN=CoRest PE=1 SV=1
Length = 657
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
WT +++ +F + H K+F I L ++ + V+YYY KK + A+
Sbjct: 181 WTIEDKVLFEQAFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKKTRHRSSAM 232
>sp|Q05655|KPCD_HUMAN Protein kinase C delta type OS=Homo sapiens GN=PRKCD PE=1 SV=2
Length = 676
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 37 DYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRE 96
D + MR +AK T R + IH+ KN IA+F + T + + ++
Sbjct: 126 DCKQSMRSEDEAKFPTMNRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQ 185
Query: 97 NYK 99
YK
Sbjct: 186 GYK 188
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K F I L ++ + V++YY KK
Sbjct: 186 WTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 229
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K F I L ++ + V++YY KK
Sbjct: 192 WTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKK 235
>sp|A6QL72|MTA3_BOVIN Metastasis-associated protein MTA3 OS=Bos taurus GN=MTA3 PE=2 SV=1
Length = 590
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
R + + W+ E +F + + K+F I FL ++ + +EYYY+ K + Y
Sbjct: 265 RDEMEEWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 319
>sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2 PE=2 SV=1
Length = 503
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
W+ +++ +F + H K+F I L + V+YYY KK
Sbjct: 132 WSVEDKVLFEQAFSFHGKSFQRIQQMLPEKLIPSLVKYYYSWKK 175
>sp|P34127|MYBA_DICDI Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2
Length = 1230
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNN 106
+ + W+ +E ++ RD++ H + IA FL RT + ++ S KR + NN
Sbjct: 252 KKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR------VSNNN 305
Query: 107 MLMK 110
+ +K
Sbjct: 306 VHLK 309
>sp|Q9BTC8|MTA3_HUMAN Metastasis-associated protein MTA3 OS=Homo sapiens GN=MTA3 PE=1
SV=2
Length = 594
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENY 98
R + + W+ E +F + + K+F I FL ++ + +EYYY+ K + Y
Sbjct: 265 RDEMEEWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 319
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT +++ +F + H K F I L + V+YYY KK
Sbjct: 135 WTVEDKVLFEQAFGFHGKCFQRIQQMLPDKVIPSLVKYYYSWKK 178
>sp|Q62599|MTA1_RAT Metastasis-associated protein MTA1 OS=Rattus norvegicus GN=Mta1
PE=1 SV=1
Length = 703
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENY 98
R + + W+ E +F + + K+F I FL ++ + +EYYY+ K + Y
Sbjct: 282 RDEMEEWSASEANLFEEALEKYGKDFTDIQQDFLPWKSLTSIIEYYYMWKTTDRY 336
>sp|Q8K4B0|MTA1_MOUSE Metastasis-associated protein MTA1 OS=Mus musculus GN=Mta1 PE=1
SV=1
Length = 715
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENY 98
R + + W+ E +F + + K+F I FL ++ + +EYYY+ K + Y
Sbjct: 282 RDEMEEWSASEANLFEEALEKYGKDFTDIQQDFLPWKSLTSIIEYYYMWKTTDRY 336
>sp|Q13330|MTA1_HUMAN Metastasis-associated protein MTA1 OS=Homo sapiens GN=MTA1 PE=1
SV=2
Length = 715
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENY 98
R + + W+ E +F + + K+F I FL ++ + +EYYY+ K + Y
Sbjct: 282 RDEMEEWSASEANLFEEALEKYGKDFTDIQQDFLPWKSLTSIIEYYYMWKTTDRY 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,755,970
Number of Sequences: 539616
Number of extensions: 1653585
Number of successful extensions: 3513
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3449
Number of HSP's gapped (non-prelim): 72
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)