Query psy639
Match_columns 114
No_of_seqs 112 out of 391
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 16:38:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1878|consensus 99.8 9.1E-21 2E-25 170.0 -0.2 102 2-104 180-281 (1672)
2 KOG4329|consensus 99.6 7.1E-16 1.5E-20 124.5 5.0 58 45-102 274-332 (445)
3 KOG1194|consensus 99.5 5.1E-14 1.1E-18 116.2 6.0 65 46-110 185-249 (534)
4 KOG4167|consensus 99.4 3.4E-13 7.3E-18 116.2 5.1 53 46-98 617-669 (907)
5 KOG3554|consensus 99.3 1.6E-12 3.5E-17 108.2 3.7 56 46-101 283-339 (693)
6 PF00249 Myb_DNA-binding: Myb- 99.2 1.5E-11 3.3E-16 72.6 5.1 45 49-93 2-48 (48)
7 smart00717 SANT SANT SWI3, AD 99.1 2.7E-10 5.9E-15 65.2 5.6 46 49-94 2-48 (49)
8 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 2.3E-09 4.9E-14 60.5 5.2 43 50-92 1-44 (45)
9 PF13921 Myb_DNA-bind_6: Myb-l 98.5 3.4E-07 7.4E-12 55.8 4.8 41 51-91 1-41 (60)
10 TIGR01557 myb_SHAQKYF myb-like 98.0 1.6E-05 3.4E-10 49.0 5.1 42 48-89 3-50 (57)
11 COG5259 RSC8 RSC chromatin rem 97.6 9.3E-05 2E-09 62.1 4.8 55 49-103 280-334 (531)
12 PLN03212 Transcription repress 97.4 0.00035 7.5E-09 54.5 5.0 46 47-92 77-122 (249)
13 KOG1279|consensus 97.2 0.00047 1E-08 58.6 4.7 46 46-91 251-296 (506)
14 PLN03091 hypothetical protein; 97.1 0.001 2.2E-08 55.7 5.2 45 47-91 66-110 (459)
15 COG5118 BDP1 Transcription ini 96.9 0.001 2.3E-08 55.0 3.7 51 41-91 358-408 (507)
16 KOG4468|consensus 96.7 0.0014 3.1E-08 56.7 3.3 46 48-93 88-143 (782)
17 KOG0457|consensus 96.4 0.0049 1.1E-07 51.4 4.6 55 48-102 72-127 (438)
18 PLN03212 Transcription repress 95.7 0.021 4.5E-07 44.7 4.8 43 48-90 25-69 (249)
19 KOG1878|consensus 95.7 0.0071 1.5E-07 56.6 2.4 91 10-103 870-961 (1672)
20 KOG0048|consensus 95.6 0.022 4.8E-07 43.7 4.7 42 48-89 62-103 (238)
21 PLN03091 hypothetical protein; 94.8 0.042 9.2E-07 46.2 4.3 44 48-91 14-59 (459)
22 KOG0049|consensus 90.7 0.36 7.8E-06 42.9 4.2 44 48-91 360-404 (939)
23 KOG1194|consensus 89.6 0.14 3.1E-06 43.4 0.8 48 48-96 470-517 (534)
24 PLN03142 Probable chromatin-re 87.6 1.2 2.7E-05 41.2 5.5 49 46-94 822-872 (1033)
25 KOG0048|consensus 86.3 1.1 2.3E-05 34.4 3.8 45 48-92 9-55 (238)
26 KOG0049|consensus 86.0 0.97 2.1E-05 40.3 3.8 39 44-82 408-447 (939)
27 COG5114 Histone acetyltransfer 85.9 1.1 2.4E-05 36.8 3.9 55 47-101 62-117 (432)
28 KOG1079|consensus 84.7 0.83 1.8E-05 40.5 2.8 58 30-89 393-450 (739)
29 KOG0050|consensus 83.7 1.2 2.5E-05 38.6 3.2 45 48-92 7-52 (617)
30 COG5147 REB1 Myb superfamily p 83.2 1.4 3.1E-05 37.8 3.5 45 47-91 71-115 (512)
31 KOG2009|consensus 81.5 1.1 2.4E-05 39.0 2.3 47 45-91 406-452 (584)
32 PF12451 VPS11_C: Vacuolar pro 69.7 4.8 0.0001 23.7 2.2 27 52-78 17-43 (49)
33 PF05263 DUF722: Protein of un 69.2 7.2 0.00016 27.7 3.4 49 46-95 77-126 (130)
34 PF13837 Myb_DNA-bind_4: Myb/S 66.1 3.4 7.4E-05 26.1 1.2 40 49-88 2-59 (90)
35 KOG4167|consensus 60.2 1.8 3.8E-05 39.0 -1.3 51 46-96 99-149 (907)
36 KOG0050|consensus 60.1 11 0.00023 32.9 3.3 42 47-89 58-99 (617)
37 PF14969 DUF4508: Domain of un 59.2 7.1 0.00015 26.6 1.8 36 37-72 51-91 (98)
38 PF07750 GcrA: GcrA cell cycle 56.4 22 0.00048 25.9 4.1 42 50-92 2-43 (162)
39 PF08730 Rad33: Rad33; InterP 50.7 6.9 0.00015 29.1 0.7 14 79-92 49-62 (170)
40 PF11084 DUF2621: Protein of u 49.6 22 0.00048 25.5 3.1 57 46-102 54-124 (141)
41 PRK02436 xerD site-specific ty 47.0 39 0.00084 24.7 4.2 41 49-90 203-244 (245)
42 PF04545 Sigma70_r4: Sigma-70, 47.0 33 0.00071 19.3 3.1 29 50-79 4-32 (50)
43 PF00589 Phage_integrase: Phag 46.5 45 0.00098 22.3 4.3 42 50-92 127-169 (173)
44 KOG2656|consensus 45.4 21 0.00046 30.1 2.8 51 41-91 123-179 (445)
45 PF06461 DUF1086: Domain of Un 43.6 49 0.0011 24.0 4.1 42 47-88 37-81 (145)
46 PF12125 Beta-TrCP_D: D domain 42.1 32 0.0007 19.7 2.4 23 48-70 4-26 (40)
47 KOG2133|consensus 41.6 4.3 9.3E-05 37.7 -1.9 44 53-96 405-449 (1229)
48 KOG4425|consensus 39.5 7.1 0.00015 34.1 -0.8 43 47-89 714-760 (900)
49 KOG0051|consensus 38.7 45 0.00097 29.5 3.9 45 47-91 435-505 (607)
50 cd01191 INT_phiCTX_C phiCTX ph 37.9 61 0.0013 22.9 4.0 37 56-92 159-195 (196)
51 PF13936 HTH_38: Helix-turn-he 37.8 33 0.00072 19.2 2.1 29 49-78 3-31 (44)
52 KOG0051|consensus 37.4 40 0.00087 29.8 3.4 40 47-87 383-422 (607)
53 PF11035 SnAPC_2_like: Small n 33.6 82 0.0018 25.9 4.4 56 46-101 19-78 (344)
54 TIGR00006 S-adenosyl-methyltra 32.5 59 0.0013 26.1 3.4 67 15-87 105-183 (305)
55 PF02954 HTH_8: Bacterial regu 30.3 83 0.0018 17.3 2.9 25 54-78 5-29 (42)
56 cd01199 INT_Tn1545_C Tn1545-re 29.7 1E+02 0.0023 21.3 4.1 41 50-90 150-191 (205)
57 cd01197 INT_FimBE_C FimB and F 28.0 94 0.002 21.5 3.5 41 50-91 129-170 (180)
58 PRK09871 tyrosine recombinase; 27.1 1.1E+02 0.0025 21.7 3.9 41 50-90 132-173 (198)
59 TIGR02937 sigma70-ECF RNA poly 26.2 1E+02 0.0023 19.8 3.4 44 46-91 106-149 (158)
60 cd01186 INT_SG3_C INT_SG3, DNA 26.1 1.3E+02 0.0029 20.9 4.1 39 49-87 123-162 (180)
61 PF11878 DUF3398: Domain of un 26.1 33 0.00072 22.9 0.9 10 82-91 52-61 (98)
62 PF04504 DUF573: Protein of un 24.9 1.5E+02 0.0032 19.6 3.9 19 48-66 4-22 (98)
63 PF02064 MAS20: MAS20 protein 24.9 24 0.00052 24.7 0.0 23 89-111 16-40 (121)
64 COG1939 Ribonuclease III famil 24.8 85 0.0018 22.5 2.7 59 47-105 65-126 (132)
65 cd01192 INT_P22_C P22-like int 24.7 1.5E+02 0.0033 20.2 4.1 45 48-93 117-162 (177)
66 PF01466 Skp1: Skp1 family, di 24.6 67 0.0014 20.1 2.0 21 71-91 37-57 (78)
67 KOG0036|consensus 24.3 2.5E+02 0.0054 24.1 5.8 67 29-96 93-163 (463)
68 PRK13923 putative spore coat p 23.9 83 0.0018 23.4 2.7 65 48-112 5-77 (170)
69 cd01188 INT_pAE1 pAE1 and rela 23.5 1.7E+02 0.0037 20.2 4.2 40 51-91 133-173 (188)
70 cd08780 Death_TRADD Death Doma 23.0 1.5E+02 0.0032 19.9 3.4 50 52-104 1-57 (90)
71 PRK09870 tyrosine recombinase; 22.5 1.3E+02 0.0028 21.5 3.5 57 51-109 138-195 (200)
72 cd01196 INT_VanD VanD integras 22.1 1.7E+02 0.0037 21.6 4.2 39 51-90 207-246 (263)
73 TIGR02895 spore_sigI RNA polym 21.9 1.3E+02 0.0027 22.9 3.4 35 46-80 113-148 (218)
74 cd01182 INT_REC_C DNA breaking 21.8 1.9E+02 0.0042 18.4 4.0 39 50-89 121-160 (162)
75 cd01183 INT_SG1_C INT_SG1, DNA 21.4 1.8E+02 0.0038 20.3 4.0 38 50-87 155-193 (196)
76 cd00799 INT_Cre Cre recombinas 20.9 1.6E+02 0.0035 21.8 3.8 40 50-89 233-273 (287)
77 cd01195 INT_Tn544B_C Tn544B an 20.8 1.9E+02 0.0041 20.3 4.0 40 51-91 145-185 (195)
78 PHA03397 vlf-1 very late expre 20.5 1.9E+02 0.0041 23.9 4.4 36 55-91 303-338 (363)
79 COG2826 Tra8 Transposase and i 20.5 1.4E+02 0.003 24.4 3.4 65 13-86 246-310 (318)
80 PRK00050 16S rRNA m(4)C1402 me 20.2 1.7E+02 0.0037 23.3 3.9 67 15-87 103-181 (296)
81 PF13873 Myb_DNA-bind_5: Myb/S 20.1 98 0.0021 18.9 2.1 46 49-94 3-70 (78)
No 1
>KOG1878|consensus
Probab=99.79 E-value=9.1e-21 Score=170.03 Aligned_cols=102 Identities=38% Similarity=0.745 Sum_probs=96.3
Q ss_pred hhhhhhcccCCCCccCCCCCCCCCCeeecCCCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCC
Q psy639 2 EDRRRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRT 81 (114)
Q Consensus 2 ~~k~~~~~A~IP~m~~~~~~~~~~~~f~d~N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks 81 (114)
.+++|+++|+||+|+.|.... .+.+|++.|++..||..+|+.++.++.|+++|++.|...|.+|+|+|+.|++++..||
T Consensus 180 ~~k~~r~~a~iP~~~~D~~~~-v~nkle~~N~~~~d~nkv~k~~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as~~erkS 258 (1672)
T KOG1878|consen 180 AEKQMRQLAVIPRMLTDSARQ-VRNKLENMNSLMKDPNKVHKDRQRMNEWSPEEKELFKSRFAQHVKNFGLIASFFERKS 258 (1672)
T ss_pred chhhhhhhhccCcccccchhh-hhhhhccCCccccCcccccchHHHhhhccccccccccchhhhcCcchhhhhhhhcccc
Confidence 478999999999999984442 6789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhhhccccchHHhhhhh
Q psy639 82 PSDCVEYYYLSKKRENYKRAIPT 104 (114)
Q Consensus 82 ~~ecv~~YY~~Kk~~~~k~l~~~ 104 (114)
+.|||.|||++|++.+|+.+.++
T Consensus 259 v~d~vlfyy~nkkte~yk~~~~r 281 (1672)
T KOG1878|consen 259 VSDCVLFYYLNKKTENYKKLVRR 281 (1672)
T ss_pred hhhceeeeeecccchhHHhhhcc
Confidence 99999999999999999999993
No 2
>KOG4329|consensus
Probab=99.60 E-value=7.1e-16 Score=124.54 Aligned_cols=58 Identities=34% Similarity=0.529 Sum_probs=53.9
Q ss_pred chhCCCCCHHHHHHHHHHHhhcCCChHHH-HhhcCCCChHHHHhHhhhccccchHHhhh
Q psy639 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENYKRAI 102 (114)
Q Consensus 45 ~~~~~~WTeeE~~~F~~~~~~~~K~F~~I-a~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~ 102 (114)
+..+..|||+|+..|+++|..|||||+.| +..|++||+++||+|||+|||+.+|....
T Consensus 274 rd~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~ 332 (445)
T KOG4329|consen 274 RDDLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFA 332 (445)
T ss_pred ccccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHh
Confidence 35677899999999999999999999999 77999999999999999999999998765
No 3
>KOG1194|consensus
Probab=99.48 E-value=5.1e-14 Score=116.18 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=61.1
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhhhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMK 110 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~~~k 110 (114)
...+.||.||+-+|.++|.+|||+|++|.+.||+||++++|+|||.|||+..|.+++..+...-|
T Consensus 185 ~~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~~s~~~~h~~~~~ 249 (534)
T KOG1194|consen 185 EFPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREYDSQMNRHRNETK 249 (534)
T ss_pred CCcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhHHHHHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999999998876544
No 4
>KOG4167|consensus
Probab=99.39 E-value=3.4e-13 Score=116.24 Aligned_cols=53 Identities=32% Similarity=0.595 Sum_probs=50.1
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchH
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENY 98 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~ 98 (114)
...+.||+.|+.+|.++|.+|.|||-.|+.+|++|||+|||+|||.|||...+
T Consensus 617 ~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~~~~ 669 (907)
T KOG4167|consen 617 AGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRL 669 (907)
T ss_pred cCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999998544
No 5
>KOG3554|consensus
Probab=99.29 E-value=1.6e-12 Score=108.16 Aligned_cols=56 Identities=27% Similarity=0.560 Sum_probs=52.6
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHH-HhhcCCCChHHHHhHhhhccccchHHhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENYKRA 101 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~I-a~~lp~Ks~~ecv~~YY~~Kk~~~~k~l 101 (114)
+.+..||..|..+|++++..|||||..| +.+||+||+.++|+|||+||.+.+|-+.
T Consensus 283 DemEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKttdRYvqq 339 (693)
T KOG3554|consen 283 DEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKTTDRYVQQ 339 (693)
T ss_pred hhhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4778999999999999999999999999 7899999999999999999999999654
No 6
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.24 E-value=1.5e-11 Score=72.63 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCC-hHHHHhhcC-CCChHHHHhHhhhcc
Q psy639 49 KMWTQQEREVFRDKYIHHQKN-FGLIASFLE-RRTPSDCVEYYYLSK 93 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~K~-F~~Ia~~lp-~Ks~~ecv~~YY~~K 93 (114)
..||++|.++|.+++.+||++ |..||..+| +||..||..+|+.++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999 999999999 999999999998764
No 7
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.10 E-value=2.7e-10 Score=65.15 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhccc
Q psy639 49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk 94 (114)
..||++|..+|..++.+|| ++|..||..+|+||..+|..+|+...+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999 999999999999999999999998654
No 8
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.95 E-value=2.3e-09 Score=60.48 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhc
Q psy639 50 MWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 50 ~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
.||++|...|..++..|| ++|..||..+|+||..+|..+|+..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 499999999999999999 9999999999999999999999864
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.47 E-value=3.4e-07 Score=55.76 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 51 WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
||++|-++..+.+..||.+|..||..||+||..+|...|+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.01 E-value=1.6e-05 Score=49.05 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-Ch---HHHHhhcC-CC-ChHHHHhHh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NF---GLIASFLE-RR-TPSDCVEYY 89 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F---~~Ia~~lp-~K-s~~ecv~~Y 89 (114)
.-.||+||+..|.+++..+|. ++ ..|++.+. ++ |..+|..++
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 457999999999999999999 99 99988764 56 999998776
No 11
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.60 E-value=9.3e-05 Score=62.14 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhh
Q psy639 49 KMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIP 103 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~ 103 (114)
..||.+|.-+..+++..||.||.+||.++++||..|||..+-.-=-..+|.+-..
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~ 334 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGD 334 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhccc
Confidence 3899999999999999999999999999999999999998866555555544433
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.36 E-value=0.00035 Score=54.51 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=42.2
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
....||+||-++-.+....+|..|..||..||+||-.+|-+.|+..
T Consensus 77 ~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~ 122 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH 122 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999998753
No 13
>KOG1279|consensus
Probab=97.22 E-value=0.00047 Score=58.57 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=42.3
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
.....||++|.-+-.+++..||.||.+||.++++||..|||..+-.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR 296 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence 4566899999999999999999999999999999999999987644
No 14
>PLN03091 hypothetical protein; Provisional
Probab=97.08 E-value=0.001 Score=55.71 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=42.0
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
....||+||-++..+.+..+|..|..||..||+||-.+|.+.||.
T Consensus 66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWns 110 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHH
Confidence 346899999999999999999999999999999999999988875
No 15
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=96.89 E-value=0.001 Score=54.96 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=44.6
Q ss_pred HHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 41 EMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 41 ~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
.|...+....||-+|.+.|-+++.+.|-||.+||+..|+|+-.++..=|-.
T Consensus 358 t~g~~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 358 TFGKKKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred cccCCCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence 344457788999999999999999999999999999999999998865544
No 16
>KOG4468|consensus
Probab=96.71 E-value=0.0014 Score=56.70 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHH----------HhhcCCCChHHHHhHhhhcc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLI----------ASFLERRTPSDCVEYYYLSK 93 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~I----------a~~lp~Ks~~ecv~~YY~~K 93 (114)
...||-+|.+.|..++.++||||..| -.....||.-++..|||..-
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 45899999999999999999999998 23346788899999999753
No 17
>KOG0457|consensus
Probab=96.43 E-value=0.0049 Score=51.43 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhhccccchHHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~ 102 (114)
...||-+|-=++.++..+||= ||.-||.+|++||-.||.++|+..=-...+..+.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~ 127 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLP 127 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCcccccc
Confidence 457999999999999999995 9999999999999999999998754444444433
No 18
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.68 E-value=0.021 Score=44.69 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CChHHHHhhc-CCCChHHHHhHhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFL-ERRTPSDCVEYYY 90 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~l-p~Ks~~ecv~~YY 90 (114)
...||+||=++-.+....|| .+|..||..+ ++||-.||.+-|.
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~ 69 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM 69 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHH
Confidence 46799999999999999998 5899999988 5999999999875
No 19
>KOG1878|consensus
Probab=95.65 E-value=0.0071 Score=56.65 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=73.5
Q ss_pred cCCCCccCCCCCCCCCCeeecCCCCCcCcHHHHHhchhCCCCC-HHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhH
Q psy639 10 SVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWT-QQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEY 88 (114)
Q Consensus 10 A~IP~m~~~~~~~~~~~~f~d~N~lv~dp~~~~~~~~~~~~WT-eeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~ 88 (114)
...|.|+.+..+. ..+.||-+||.+.++...-........|+ -|+.+.|+..+..++|+|..|+++++..+.++ + +
T Consensus 870 lk~~a~v~~~~E~-~msr~i~tn~~~~~~~~~~~~~~g~~P~~t~E~~e~~Ln~lr~~~k~~P~i~~s~~a~kt~q-~-~ 946 (1672)
T KOG1878|consen 870 LKMPAVVSAGAEG-LMSRAIPTNNHSPALLKEPIVQQGGIPRRTVETPEDILNPLRPTAKSTPPIRQSLGAFKTQQ-Q-Q 946 (1672)
T ss_pred hcccccccccccc-cccccccCCCCCccccccchhhccCCCcccccchHHHhhhccccCCCCCchHHHHHhhhhhc-c-c
Confidence 3468899888885 67899999999999988777767778898 99999999999999999999999999999999 4 4
Q ss_pred hhhccccchHHhhhh
Q psy639 89 YYLSKKRENYKRAIP 103 (114)
Q Consensus 89 YY~~Kk~~~~k~l~~ 103 (114)
||+-+-..+.-+++.
T Consensus 947 ~~lkp~~s~~~~~Ik 961 (1672)
T KOG1878|consen 947 QQLKPQQSNLMQTIK 961 (1672)
T ss_pred hhhcchhhhHHHHHH
Confidence 444444444444444
No 20
>KOG0048|consensus
Probab=95.64 E-value=0.022 Score=43.66 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY 89 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y 89 (114)
...||+||-++-.++-..+|--|..||..||+||--++-+|.
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~W 103 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHW 103 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHH
Confidence 458999999999999999999999999999999999998884
No 21
>PLN03091 hypothetical protein; Provisional
Probab=94.81 E-value=0.042 Score=46.20 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcC-CCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLE-RRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp-~Ks~~ecv~~YY~ 91 (114)
...||+||=++..+....||. +|..||..++ +||-.||.+-|..
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~N 59 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWIN 59 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHh
Confidence 457999999999999999996 7999998875 9999999988763
No 22
>KOG0049|consensus
Probab=90.70 E-value=0.36 Score=42.87 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
-..||++|-.+...+...||. +|.+|.+.+|+||.+||..-|-.
T Consensus 360 hg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n 404 (939)
T KOG0049|consen 360 HGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN 404 (939)
T ss_pred CCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence 358999999999999998875 66789999999999999988843
No 23
>KOG1194|consensus
Probab=89.62 E-value=0.14 Score=43.39 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRE 96 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~ 96 (114)
.-.||++|+. -.++|..|+.+|..|+..+.+||.-|+-.||-...++.
T Consensus 470 ~~~wSp~e~s-~ircf~~y~~~fe~ia~l~~tktp~Q~~~fy~~n~k~i 517 (534)
T KOG1194|consen 470 NYGWSPEEKS-AIRCFHWYKDNFELIAELMATKTPEQIKKFYMDNEKLI 517 (534)
T ss_pred cCCCCCcccc-cccCchhhccchHHHHHHhcCCCHHHHHHHhcCchhhh
Confidence 4579999997 88899999999999999999999999999998887763
No 24
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=87.57 E-value=1.2 Score=41.15 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=43.2
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh-ccc
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL-SKK 94 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~-~Kk 94 (114)
..-..||-.+-..|..+...||. ++..||..+++||..|+..|.=. |.+
T Consensus 822 ~gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~ 872 (1033)
T PLN03142 822 EGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWER 872 (1033)
T ss_pred cCcCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 56678999999999999999998 78999999999999999988743 544
No 25
>KOG0048|consensus
Probab=86.25 E-value=1.1 Score=34.38 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC-hHHHHhhcC-CCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKN-FGLIASFLE-RRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~-F~~Ia~~lp-~Ks~~ecv~~YY~~ 92 (114)
...||.||=++..+-+..||.. |..|+..+| .|+-.+|..-...+
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~Ny 55 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNY 55 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcc
Confidence 3789999999999999999985 999999999 99999999766544
No 26
>KOG0049|consensus
Probab=86.04 E-value=0.97 Score=40.27 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=35.9
Q ss_pred hchhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCCh
Q psy639 44 DRAQAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTP 82 (114)
Q Consensus 44 ~~~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~ 82 (114)
.+...+.||-.|-+.......+||+ +|.+||.+||++|-
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~ 447 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS 447 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHccccch
Confidence 4467889999999999999999999 89999999999998
No 27
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=85.92 E-value=1.1 Score=36.76 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=46.1
Q ss_pred hCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhhccccchHHhh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYLSKKRENYKRA 101 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l 101 (114)
....|+..|--+|.++....|= +|..||.+++.|+-.||..+|+..=-...|.-|
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~es~~ypl 117 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPL 117 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhhcccccc
Confidence 4568999999999999999885 999999999999999999999876554444443
No 28
>KOG1079|consensus
Probab=84.74 E-value=0.83 Score=40.46 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=46.2
Q ss_pred cCCCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639 30 NNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY 89 (114)
Q Consensus 30 d~N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y 89 (114)
.+|+++.+|+..-+ .....|+.-|...|..+-..||.++..||..|.+||..+|-+|-
T Consensus 393 ~~~~~c~~~~~~~~--~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~~ktC~~v~~~~ 450 (739)
T KOG1079|consen 393 STNSICQNPVHGKK--DTNVEWNGAEKVLFRVGSTLYGTNRCSIARNLLTKTCRQVYEYE 450 (739)
T ss_pred cccccccCcccccC--CcccccchhhhHHHHhccccccchhhHHHHHhcchHHHHHHHHh
Confidence 34666666644322 23448999999999999999999999999999999999887765
No 29
>KOG0050|consensus
Probab=83.72 E-value=1.2 Score=38.63 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
...|+..|-++-.-+...||+ +|.+||+.+..||-.+|-.-||-|
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ 52 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEW 52 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 467999999999999999999 799999999999999999988865
No 30
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=83.17 E-value=1.4 Score=37.84 Aligned_cols=45 Identities=31% Similarity=0.528 Sum_probs=41.7
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
....||++|-++-...-.++|-.|..||..+|.+|..+|++.|-.
T Consensus 71 k~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~ 115 (512)
T COG5147 71 KKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVN 115 (512)
T ss_pred ccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHH
Confidence 345799999999999999999999999999999999999999973
No 31
>KOG2009|consensus
Probab=81.52 E-value=1.1 Score=38.98 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=42.3
Q ss_pred chhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 45 ~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
....+.||-+|.++|..++-..|-+|..|++..|.|+..++..=|-.
T Consensus 406 ~~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 406 KLETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 36788999999999999999999999999999999999998865543
No 32
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=69.68 E-value=4.8 Score=23.72 Aligned_cols=27 Identities=15% Similarity=0.457 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhhcCCChHHHHhhcC
Q psy639 52 TQQEREVFRDKYIHHQKNFGLIASFLE 78 (114)
Q Consensus 52 TeeE~~~F~~~~~~~~K~F~~Ia~~lp 78 (114)
+.+.+++|...+......|..||.+++
T Consensus 17 ~~~~~d~F~~~L~~s~D~F~vIaeyfG 43 (49)
T PF12451_consen 17 SADQHDLFFKQLEESEDRFSVIAEYFG 43 (49)
T ss_pred HhhcHHHHHHHHHhCCCCchhHHHHHc
Confidence 456789999999999999999999886
No 33
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=69.24 E-value=7.2 Score=27.68 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=42.5
Q ss_pred hhCCCCCHHHHHHHHHHHhhc-CCChHHHHhhcCCCChHHHHhHhhhcccc
Q psy639 46 AQAKMWTQQEREVFRDKYIHH-QKNFGLIASFLERRTPSDCVEYYYLSKKR 95 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~-~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~ 95 (114)
...+.++++++++|.-.|..+ +..|..||..+- .+.+.|..+|+.-|..
T Consensus 77 ~~~~~l~de~k~Ii~lry~~r~~~TW~~IA~~l~-i~erta~r~~~~fK~~ 126 (130)
T PF05263_consen 77 RWLETLIDEEKRIIKLRYDRRSRRTWYQIAQKLH-ISERTARRWRDRFKND 126 (130)
T ss_pred HHHHhhCHHHHHHHHHHHcccccchHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 467789999999999999988 779999998875 8999999999887764
No 34
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=66.07 E-value=3.4 Score=26.06 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHhhc--CC------------ChHHHHhhcC----CCChHHHHhH
Q psy639 49 KMWTQQEREVFRDKYIHH--QK------------NFGLIASFLE----RRTPSDCVEY 88 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~--~K------------~F~~Ia~~lp----~Ks~~ecv~~ 88 (114)
..||++|...|.+.+... -. -|..||..|. .+|..||-.=
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~K 59 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNK 59 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 579999999998887761 11 3566776652 7888888753
No 35
>KOG4167|consensus
Probab=60.23 E-value=1.8 Score=38.97 Aligned_cols=51 Identities=12% Similarity=-0.141 Sum_probs=46.8
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccc
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRE 96 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~ 96 (114)
...-.|+..+...|..+.-+.+++|..|+.....++.++||.-||.|+...
T Consensus 99 ~~qm~~~qy~~Pq~l~g~s~q~~~~p~I~s~~qqlRsS~pv~pp~~qfp~~ 149 (907)
T KOG4167|consen 99 MQQMQQHQYYPPQQLQGASQQRISMPEIQSQPQQLRSSQPVPPPQQQFPQQ 149 (907)
T ss_pred HHHhhcccccCcchhhhhhcCCccccchhcccccccCCCCcCCHHHhhhhh
Confidence 344579999999999999999999999999999999999999999998864
No 36
>KOG0050|consensus
Probab=60.06 E-value=11 Score=32.94 Aligned_cols=42 Identities=24% Similarity=0.467 Sum_probs=37.7
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY 89 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y 89 (114)
....||-+|-+.-...+...|-+|..||..|+ +|..+|.+-|
T Consensus 58 ~~tews~eederlLhlakl~p~qwrtIa~i~g-r~~~qc~eRy 99 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPTQWRTIADIMG-RTSQQCLERY 99 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCccchHHHHhh-hhHHHHHHHH
Confidence 45689999999999999999999999999885 7889999877
No 37
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=59.25 E-value=7.1 Score=26.58 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=28.5
Q ss_pred CcHHHHHh-----chhCCCCCHHHHHHHHHHHhhcCCChHH
Q psy639 37 DYEAEMRD-----RAQAKMWTQQEREVFRDKYIHHQKNFGL 72 (114)
Q Consensus 37 dp~~~~~~-----~~~~~~WTeeE~~~F~~~~~~~~K~F~~ 72 (114)
-|...+.= ++....|+++|+..|.+.+....-+|+.
T Consensus 51 kppsiFqCqlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~ 91 (98)
T PF14969_consen 51 KPPSIFQCQLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVA 91 (98)
T ss_pred CCCcHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhChHHHH
Confidence 35555542 2788999999999999999998888864
No 38
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=56.36 E-value=22 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 50 MWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 50 ~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
.||+|..+.. ..+..-|-....||..|+.-|-.-+|.-....
T Consensus 2 ~Wtde~~~~L-~~lw~~G~SasqIA~~lg~vsRnAViGk~hRl 43 (162)
T PF07750_consen 2 SWTDERVERL-RKLWAEGLSASQIARQLGGVSRNAVIGKAHRL 43 (162)
T ss_pred CCCHHHHHHH-HHHHHcCCCHHHHHHHhCCcchhhhhhhhhcc
Confidence 5999999865 55668899999999999988888888766654
No 39
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=50.67 E-value=6.9 Score=29.12 Aligned_cols=14 Identities=29% Similarity=0.935 Sum_probs=11.8
Q ss_pred CCChHHHHhHhhhc
Q psy639 79 RRTPSDCVEYYYLS 92 (114)
Q Consensus 79 ~Ks~~ecv~~YY~~ 92 (114)
++.+.+||.|||..
T Consensus 49 T~DI~~cidyyY~~ 62 (170)
T PF08730_consen 49 TKDINECIDYYYKF 62 (170)
T ss_pred HHhHHHHHHHHHHh
Confidence 56789999999983
No 40
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=49.64 E-value=22 Score=25.53 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=37.7
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHH-----hhc---------CCCChHHHHhHhhhccccchHHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIA-----SFL---------ERRTPSDCVEYYYLSKKRENYKRAI 102 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia-----~~l---------p~Ks~~ecv~~YY~~Kk~~~~k~l~ 102 (114)
+..+.||+|+++.+.+-..--|.-|..|| ..+ ..-|..-||.=|-.---..+++.|.
T Consensus 54 ~trhlW~de~K~lL~eLV~PVPelFRdvAk~kIAgkIgelAl~e~a~~it~d~iIrGYI~ATPKRDhkfL~ 124 (141)
T PF11084_consen 54 KTRHLWTDEQKALLEELVSPVPELFRDVAKHKIAGKIGELALEEKASEITRDLIIRGYILATPKRDHKFLR 124 (141)
T ss_pred HhHhhcCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHhhhhhcCCchhHHHHH
Confidence 77899999999988888888999995543 222 2445666776665532223344443
No 41
>PRK02436 xerD site-specific tyrosine recombinase XerD-like protein; Reviewed
Probab=47.05 E-value=39 Score=24.73 Aligned_cols=41 Identities=29% Similarity=0.337 Sum_probs=32.3
Q ss_pred CCCCHHH-HHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhh
Q psy639 49 KMWTQQE-REVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 49 ~~WTeeE-~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
..||... +..|...+...|.|-..|+..|||.++. ....||
T Consensus 203 ~~~t~H~lRHtfat~~~~~g~~~~~l~~~lGH~~~~-tt~~Y~ 244 (245)
T PRK02436 203 PGLSAQKLREQFILKQKEAGKSIYELARLLGLKSPV-TLEKYY 244 (245)
T ss_pred CCCCcchhHHHHHHHHHHcCCCHHHHHHHhCCCCHH-HHHHHh
Confidence 3576654 6678888888999999999999999974 555666
No 42
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=47.00 E-value=33 Score=19.31 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHhhcCCChHHHHhhcCC
Q psy639 50 MWTQQEREVFRDKYIHHQKNFGLIASFLER 79 (114)
Q Consensus 50 ~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~ 79 (114)
.=+++|++++...| ..|..+.-||..++-
T Consensus 4 ~L~~~er~vi~~~y-~~~~t~~eIa~~lg~ 32 (50)
T PF04545_consen 4 QLPPREREVIRLRY-FEGLTLEEIAERLGI 32 (50)
T ss_dssp TS-HHHHHHHHHHH-TST-SHHHHHHHHTS
T ss_pred hCCHHHHHHHHHHh-cCCCCHHHHHHHHCC
Confidence 45788999998888 678889999888764
No 43
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=46.52 E-value=45 Score=22.34 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=35.1
Q ss_pred CCCHHHHH-HHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 50 MWTQQERE-VFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 50 ~WTeeE~~-~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
.||.-.-. .|...+...|-+...|+..++|+|.... ..|...
T Consensus 127 ~~~~h~lR~t~~t~l~~~g~~~~~i~~~~gH~s~~~~-~~Y~~~ 169 (173)
T PF00589_consen 127 KFTPHSLRHTFATNLARSGVPIEVIAKLMGHSSIEMT-RHYLKS 169 (173)
T ss_dssp CTCHHHHHHHHHHHHHHTTTSHHHHHHHHTSSSHHHH-HHHHHH
T ss_pred cccccccccccccccccccccHHHHHHHcCCCCHHHH-HhhcCc
Confidence 67877655 7888888899999999999999999988 777654
No 44
>KOG2656|consensus
Probab=45.35 E-value=21 Score=30.08 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=38.1
Q ss_pred HHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhh-----cCC-CChHHHHhHhhh
Q psy639 41 EMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASF-----LER-RTPSDCVEYYYL 91 (114)
Q Consensus 41 ~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~-----lp~-Ks~~ecv~~YY~ 91 (114)
.|+..-.-+.||-+|.+-..+--..|.=-|..||.- .+. ||+.|..+-||.
T Consensus 123 EYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~ 179 (445)
T KOG2656|consen 123 EYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYS 179 (445)
T ss_pred HHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHH
Confidence 333333447799999987777666778888899875 665 999999977765
No 45
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=43.57 E-value=49 Score=24.01 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=34.8
Q ss_pred hCCCCCHHHHHHHHHHHhhcCC---ChHHHHhhcCCCChHHHHhH
Q psy639 47 QAKMWTQQEREVFRDKYIHHQK---NFGLIASFLERRTPSDCVEY 88 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K---~F~~Ia~~lp~Ks~~ecv~~ 88 (114)
.+--++..++.+|..++..||- +|......|..||..++-.|
T Consensus 37 ~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY 81 (145)
T PF06461_consen 37 EVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAY 81 (145)
T ss_pred EEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHH
Confidence 3456899999999999999998 56777888999998887654
No 46
>PF12125 Beta-TrCP_D: D domain of beta-TrCP; InterPro: IPR021977 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found associated with PF00646 from PFAM, PF00400 from PFAM. The protein that contains this domain functions as a ubiquitin ligase. Ubiquitination is required to direct proteins towards the proteasome for degradation. This protein is part of the WD40 class of F box proteins. The D domain of these F box proteins is involved in mediating the dimerisation of the protein. Dimerisation is necessary to polyubiquitinate substrates so this D domain is vital in directing substrates towards the proteasome for degradation. ; PDB: 2P64_A 1P22_A.
Probab=42.10 E-value=32 Score=19.67 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCh
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNF 70 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F 70 (114)
-+.||+.|.--|.+.+...=-.|
T Consensus 4 F~~Wse~eQvdFVe~Ll~rM~H~ 26 (40)
T PF12125_consen 4 FDKWSESEQVDFVEQLLSRMCHY 26 (40)
T ss_dssp HTTS-HHHHHHHHHHHHHTS-HH
T ss_pred hhccCchhHHHHHHHHHHHHHHH
Confidence 36899999999999987644433
No 47
>KOG2133|consensus
Probab=41.55 E-value=4.3 Score=37.67 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhcCCChHHH-HhhcCCCChHHHHhHhhhccccc
Q psy639 53 QQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRE 96 (114)
Q Consensus 53 eeE~~~F~~~~~~~~K~F~~I-a~~lp~Ks~~ecv~~YY~~Kk~~ 96 (114)
.++..-|-......|+.|..| .+.+++-|-.+++.|||+|+++.
T Consensus 405 pd~~~gf~~~phsvg~p~s~~hk~q~p~~tqpqlpS~y~lw~QtP 449 (1229)
T KOG2133|consen 405 PDDAKGFASGPHSVGKPFSRIHKEQLPHHTQPQLPSYYYLWKQTP 449 (1229)
T ss_pred cccccccccCccccCCccccchhccCccccCCCCchhhhhhccCC
Confidence 788889999999999999998 56788889999999999999985
No 48
>KOG4425|consensus
Probab=39.54 E-value=7.1 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=36.8
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhc----CCCChHHHHhHh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFL----ERRTPSDCVEYY 89 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~l----p~Ks~~ecv~~Y 89 (114)
.-+.|+++|..+-.+-++.+..||+.++..| -.-.++||+++-
T Consensus 714 ddde~~ede~ka~kdvi~fda~d~h~vahhlaldl~eppvsqchqwv 760 (900)
T KOG4425|consen 714 DDDEWSEDEPKATKDVICFDAEDFHDVAHHLALDLHEPPVSQCHQWV 760 (900)
T ss_pred ccchhccccccccceEEEeehHHHHHHHHHHhhhccCCcHHHHHHHH
Confidence 4458999999999999999999999998765 467899999874
No 49
>KOG0051|consensus
Probab=38.72 E-value=45 Score=29.49 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=35.0
Q ss_pred hCCCCCHHHHHHHHHHHh------hcC--------------------CChHHHHhhcCCCChHHHHhHhhh
Q psy639 47 QAKMWTQQEREVFRDKYI------HHQ--------------------KNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~------~~~--------------------K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
..+.||-||-+...+.+- +++ =+|..|++.+++|+.-+|-.-||-
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~k 505 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYK 505 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHH
Confidence 678999999887776662 233 268999999999999999866664
No 50
>cd01191 INT_phiCTX_C phiCTX phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various phage and bacterial integrases, including those similar to phage integrases: Bordetella and Pseudomonas phiCTX; E. coli Rac, Qin, and Shiga toxin 2 933W; and Salmonella typhimurium LT2 Gifsy-2 and Fels-1; and a putative pore-forming cytotoxin integrase from Vibrio parahaemolyticus O3:K6.
Probab=37.91 E-value=61 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 56 REVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 56 ~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
+..|...+...|-+-..|+..++|+++...-..|-.|
T Consensus 159 Rht~at~l~~~g~~~~~i~~~lGH~~~~~~~~~Y~~~ 195 (196)
T cd01191 159 RHTFASWMLTAGANPAFIADQMGHKSAEMVFKHYGKW 195 (196)
T ss_pred hHHHHHHHHHCCCCHHHHHHHhCCCchhhHHHHHhcc
Confidence 5677777788899999999999999988766777654
No 51
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=37.81 E-value=33 Score=19.24 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCChHHHHhhcC
Q psy639 49 KMWTQQEREVFRDKYIHHQKNFGLIASFLE 78 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp 78 (114)
..+|.+|+..-. .+..-|.....||..|+
T Consensus 3 ~~Lt~~eR~~I~-~l~~~G~s~~~IA~~lg 31 (44)
T PF13936_consen 3 KHLTPEERNQIE-ALLEQGMSIREIAKRLG 31 (44)
T ss_dssp ---------HHH-HHHCS---HHHHHHHTT
T ss_pred cchhhhHHHHHH-HHHHcCCCHHHHHHHHC
Confidence 357888887644 66789999999999887
No 52
>KOG0051|consensus
Probab=37.42 E-value=40 Score=29.78 Aligned_cols=40 Identities=28% Similarity=0.560 Sum_probs=33.6
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVE 87 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~ 87 (114)
....||++|-+.-...-.++|.+|..|+..|+.. ..+|..
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~-P~~crd 422 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRM-PMDCRD 422 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHHccC-cHHHHH
Confidence 5678999999999999999999999999998754 445654
No 53
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=33.57 E-value=82 Score=25.90 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=41.1
Q ss_pred hhCCCCCHHHHHHHHHHHhhc-CCCh---HHHHhhcCCCChHHHHhHhhhccccchHHhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHH-QKNF---GLIASFLERRTPSDCVEYYYLSKKRENYKRA 101 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~-~K~F---~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l 101 (114)
.....||.-|+......+... |... .-|+..|++||..|+-.|-=.-|.+.--..+
T Consensus 19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rvareai 78 (344)
T PF11035_consen 19 TGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVAREAI 78 (344)
T ss_pred CCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 334689999999988888743 4433 4578889999999999998777765433333
No 54
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=32.45 E-value=59 Score=26.13 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=39.7
Q ss_pred ccCCCCCCCCCCeeecCCCCCc---CcHHHHHhchhCCCCCHHHHHHHHHHHhhcCC--ChHHHHhhc-------CCCCh
Q psy639 15 IICDPRHPFTGPRFINNNGRVT---DYEAEMRDRAQAKMWTQQEREVFRDKYIHHQK--NFGLIASFL-------ERRTP 82 (114)
Q Consensus 15 m~~~~~~~~~~~~f~d~N~lv~---dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K--~F~~Ia~~l-------p~Ks~ 82 (114)
|.+|..+ +..+|. .+|-++ ||.+-......++.|+++|. ..-|..||. .-.+||..+ |-.|+
T Consensus 105 ~Qld~~~--RGFSf~-~dgpLDMRMd~~~~~tA~~~ln~~~e~~L---~~i~~~yGEe~~a~~IA~~Iv~~R~~~~i~tt 178 (305)
T TIGR00006 105 PQLDDPE--RGFSFK-HDGPLDMRMDQSQKLSAAEILNTYSEEDL---ERILKKYGEEKFSKRIARAIVERRKKKPIQTT 178 (305)
T ss_pred hhcCCCC--CCCccC-CCCCcccccCCCCCCCHHHHHhhCCHHHH---HHHHHHhcCcchHHHHHHHHHHHHhcCCCCCH
Confidence 4456666 456664 344443 44332233478899999998 455666665 456687655 55676
Q ss_pred HHHHh
Q psy639 83 SDCVE 87 (114)
Q Consensus 83 ~ecv~ 87 (114)
.|.++
T Consensus 179 ~~L~~ 183 (305)
T TIGR00006 179 KELAE 183 (305)
T ss_pred HHHHH
Confidence 66654
No 55
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=30.27 E-value=83 Score=17.29 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHhhcC
Q psy639 54 QEREVFRDKYIHHQKNFGLIASFLE 78 (114)
Q Consensus 54 eE~~~F~~~~~~~~K~F~~Ia~~lp 78 (114)
=|+....+++..++-+....|..|+
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 3788899999999999999998876
No 56
>cd01199 INT_Tn1545_C Tn1545-related conjugative transposon integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes bacterial (gram positive) and phage integrases, including those similar to Tn1545, Tn5252, and Tn5276 conjugative transposon integrases and Lactobacillus phage phi adh integrase.
Probab=29.69 E-value=1e+02 Score=21.31 Aligned_cols=41 Identities=10% Similarity=0.006 Sum_probs=31.2
Q ss_pred CCCHHH-HHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhh
Q psy639 50 MWTQQE-REVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 50 ~WTeeE-~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
.+|... +..|...+...|-+...|+..++|.+.+....+|-
T Consensus 150 ~~~~h~lRht~~t~~~~~g~~~~~i~~~lGH~~~~~~~~~Y~ 191 (205)
T cd01199 150 HVTTHIFRHTHISFLAEEGVPLKAIMDRVGHSDGKTTLRIYS 191 (205)
T ss_pred CcceecchHHHHHHHHHcCCCHHHHHHHhCCCchHHHHHHHH
Confidence 455554 34777777788888899999999999877777665
No 57
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=28.01 E-value=94 Score=21.46 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=30.8
Q ss_pred CCCHHH-HHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 50 MWTQQE-REVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 50 ~WTeeE-~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
.||... +..|...+...|-+-..|+..++|+|++-. .-|..
T Consensus 129 ~~~~H~lRht~~t~l~~~g~~~~~i~~~lGH~~~~~t-~~Y~~ 170 (180)
T cd01197 129 KVHPHMLRHACGYALANQGADTRLIQDYLGHRNIRHT-VIYTA 170 (180)
T ss_pred CCCcchhhhHHHHHHHHcCCCHHHHHHHhCCCCcchh-HHHHh
Confidence 466544 556777777889999999999999998865 44543
No 58
>PRK09871 tyrosine recombinase; Provisional
Probab=27.06 E-value=1.1e+02 Score=21.65 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=31.9
Q ss_pred CCCHH-HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhh
Q psy639 50 MWTQQ-EREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 50 ~WTee-E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
.+|.. =+..|...+...|-+-..|+..|+|+++.-...|.-
T Consensus 132 ~~~~H~LRHT~at~l~~~G~~~~~i~~~lGH~si~tT~~Y~~ 173 (198)
T PRK09871 132 QTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTA 173 (198)
T ss_pred CCCCcccchHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 45443 356778888888999999999999999988876443
No 59
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=26.18 E-value=1e+02 Score=19.82 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.8
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...+..++.++.+|...+. .|.....||+.++- |.+.+-...+.
T Consensus 106 ~~l~~L~~~~~~ii~~~~~-~g~s~~eIA~~l~~-s~~~v~~~~~~ 149 (158)
T TIGR02937 106 EALEKLPEREREVLVLRYL-EGLSYKEIAEILGI-SVGTVKRRLKR 149 (158)
T ss_pred HHHHhCCHHHHHHHhhHHh-cCCCHHHHHHHHCC-CHHHHHHHHHH
Confidence 4556789999999866554 68999999998875 55555555444
No 60
>cd01186 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 3, catalytic domain. The CD contains various predicted bacterial and phage integrase/recombinase sequences for which not much experimental characterization is available.
Probab=26.11 E-value=1.3e+02 Score=20.89 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCCCHH-HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHh
Q psy639 49 KMWTQQ-EREVFRDKYIHHQKNFGLIASFLERRTPSDCVE 87 (114)
Q Consensus 49 ~~WTee-E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~ 87 (114)
..||.. =+..|...+...|-+...|+..|+|++......
T Consensus 123 ~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~ 162 (180)
T cd01186 123 DNIGTHTLRKTFGYHYYKQTKDIALLMEIFNHSSPAITLR 162 (180)
T ss_pred CcccccccHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHH
Confidence 456665 456677788888999999999999999977765
No 61
>PF11878 DUF3398: Domain of unknown function (DUF3398); InterPro: IPR021816 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is about 100 amino acids in length.
Probab=26.07 E-value=33 Score=22.91 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=8.0
Q ss_pred hHHHHhHhhh
Q psy639 82 PSDCVEYYYL 91 (114)
Q Consensus 82 ~~ecv~~YY~ 91 (114)
+.|||.+|..
T Consensus 52 Vreci~~Yt~ 61 (98)
T PF11878_consen 52 VRECIKSYTS 61 (98)
T ss_pred HHHHHHHhCc
Confidence 7888888864
No 62
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=24.93 E-value=1.5e+02 Score=19.65 Aligned_cols=19 Identities=16% Similarity=0.546 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHhhc
Q psy639 48 AKMWTQQEREVFRDKYIHH 66 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~ 66 (114)
...||+++--.+.++++.|
T Consensus 4 qR~WS~eDEi~iL~gl~~~ 22 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDF 22 (98)
T ss_pred cCCCCchHHHHHHHHHHHH
Confidence 4579999999999999887
No 63
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=24.92 E-value=24 Score=24.66 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=0.0
Q ss_pred hhhcccc--chHHhhhhhhhhhhhc
Q psy639 89 YYLSKKR--ENYKRAIPTNNMLMKE 111 (114)
Q Consensus 89 YY~~Kk~--~~~k~l~~~~~~~~k~ 111 (114)
||.+|++ .+|+..+++++++.++
T Consensus 16 YFD~KRR~dP~frkkL~~rrk~~~~ 40 (121)
T PF02064_consen 16 YFDYKRRSDPDFRKKLRERRKKQAK 40 (121)
T ss_dssp -------------------------
T ss_pred hcccccccChHHHHHHHHHHHHHHH
Confidence 5566555 8899999887766543
No 64
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=24.76 E-value=85 Score=22.45 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=42.4
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHH---HHhhcCCCChHHHHhHhhhccccchHHhhhhhh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGL---IASFLERRTPSDCVEYYYLSKKRENYKRAIPTN 105 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~---Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~ 105 (114)
..+.-||+|.+++..+-....+-+.+ +...=-.=.+.-+|.|.|+.+...+..++++.-
T Consensus 65 ~~~~Lte~E~~I~KRgRNaks~T~~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 65 LLEFLTEEEEEIVKRGRNAKSGTKPKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred HHHHhhHHHHHHHHHhcccccCCCCCCCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34478999999999887765555544 222223345677899999999999998888753
No 65
>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1.
Probab=24.71 E-value=1.5e+02 Score=20.20 Aligned_cols=45 Identities=4% Similarity=0.018 Sum_probs=33.2
Q ss_pred CCCCCHHHHH-HHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcc
Q psy639 48 AKMWTQQERE-VFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSK 93 (114)
Q Consensus 48 ~~~WTeeE~~-~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~K 93 (114)
...||..... .|...+...|-+...|+..++|.+....- .|+.+-
T Consensus 117 ~~~~~~h~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~-~Y~~~~ 162 (177)
T cd01192 117 ISDFRWHDLRHTWASWLVQSGVPLYVLQELLGHSSLQMVR-RYAHLS 162 (177)
T ss_pred CCCCcchhhhHHHHHHHHHcCCCHHHHHHHhCCCCHHHHH-HHHcCC
Confidence 3468876654 67777777899999999999999966655 465543
No 66
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=24.56 E-value=67 Score=20.15 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=15.6
Q ss_pred HHHHhhcCCCChHHHHhHhhh
Q psy639 71 GLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 71 ~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
..||..+.+||+.++..++-.
T Consensus 37 ~~iA~~i~gks~eeir~~fgi 57 (78)
T PF01466_consen 37 KYIANMIKGKSPEEIRKYFGI 57 (78)
T ss_dssp HHHHHHHTTS-HHHHHHHHT-
T ss_pred HHHHHHhcCCCHHHHHHHcCC
Confidence 346888999999999988743
No 67
>KOG0036|consensus
Probab=24.27 E-value=2.5e+02 Score=24.06 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=50.6
Q ss_pred ecCCCCCcCcHHHHHhc-hhCCCCCHHHHHHHHHHHhhcCC---ChHHHHhhcCCCChHHHHhHhhhccccc
Q psy639 29 INNNGRVTDYEAEMRDR-AQAKMWTQQEREVFRDKYIHHQK---NFGLIASFLERRTPSDCVEYYYLSKKRE 96 (114)
Q Consensus 29 ~d~N~lv~dp~~~~~~~-~~~~~WTeeE~~~F~~~~~~~~K---~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~ 96 (114)
.+.||.+ ||.+..... .--..-++|+.+.|.+..-+.|+ +|.--++++--=..+++-.-|+.|+...
T Consensus 93 ~~hdG~i-~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~~ 163 (463)
T KOG0036|consen 93 LEHDGKI-DPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHVL 163 (463)
T ss_pred cccCCcc-CHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhhe
Confidence 3567866 677666555 55567999999999999888887 6777777765555888888899998753
No 68
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=23.90 E-value=83 Score=23.38 Aligned_cols=65 Identities=15% Similarity=0.328 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHH-HHhh-----cCCCChHHHHhHh--hhccccchHHhhhhhhhhhhhcC
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGL-IASF-----LERRTPSDCVEYY--YLSKKRENYKRAIPTNNMLMKET 112 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~-Ia~~-----lp~Ks~~ecv~~Y--Y~~Kk~~~~k~l~~~~~~~~k~~ 112 (114)
.+.||+|+-.+..+.+..|++.=+. ++.+ .=.+|.+.|---| +..|+...=-++..+.++.+||+
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr~ 77 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQYQEQIKLAKKERKELRRQ 77 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 4689999999999999988875322 3222 2267777775444 22233333334444555555554
No 69
>cd01188 INT_pAE1 pAE1 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal domain. This CD includes various bacterial integrases, including the predicted integrase of the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1.
Probab=23.51 E-value=1.7e+02 Score=20.18 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCHHHHH-HHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 51 WTQQERE-VFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 51 WTeeE~~-~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
+|...-. .|...+...|.+...|+..++|.+.... ..|+.
T Consensus 133 ~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t-~~Y~~ 173 (188)
T cd01188 133 GGAHLLRHSLATRLLRAGAPLKEIGDVLGHRSPDST-AIYAK 173 (188)
T ss_pred CCcHHHHHHHHHHHHHcCCCHHHHHHHhCCCChHHH-HHHHH
Confidence 6666555 8888888899999999999999998755 45543
No 70
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=22.98 E-value=1.5e+02 Score=19.90 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHhhcCCChHHHHhhcC------CCChHHHHhHhhhcc-ccchHHhhhhh
Q psy639 52 TQQEREVFRDKYIHHQKNFGLIASFLE------RRTPSDCVEYYYLSK-KRENYKRAIPT 104 (114)
Q Consensus 52 TeeE~~~F~~~~~~~~K~F~~Ia~~lp------~Ks~~ecv~~YY~~K-k~~~~k~l~~~ 104 (114)
|+++...|.+.+ |++|..++-.|+ +-+.=|.|.|=|-.. -...-+++|++
T Consensus 1 ~~~~~q~~~~nv---Gr~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~ 57 (90)
T cd08780 1 TPADQQHFAKSV---GKKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRR 57 (90)
T ss_pred CHHHHHHHHHHH---hHHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHH
Confidence 577788887765 799999999998 334556677666543 22333344443
No 71
>PRK09870 tyrosine recombinase; Provisional
Probab=22.46 E-value=1.3e+02 Score=21.50 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=40.1
Q ss_pred CCHH-HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhhhh
Q psy639 51 WTQQ-EREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLM 109 (114)
Q Consensus 51 WTee-E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~~~ 109 (114)
.|.. =+..|...+...|-+...|+..|+|.|+..... |..--....+.+.+..+.+.
T Consensus 138 ~t~H~lRht~at~l~~~G~~~~~i~~~LGH~s~~tT~~--Y~~~~~~~~~~~~~~~~~~~ 195 (200)
T PRK09870 138 IHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVW--YTASNAGRFYGIWDRARGRQ 195 (200)
T ss_pred CCCccccchHHHHHHHcCCCHHHHHHHHCCCCHHHhHH--HHHhhHHHHHHHHHHhcccc
Confidence 5543 355677778888999999999999999988764 33333346667766665543
No 72
>cd01196 INT_VanD VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases including those similar to IntD, a putative integrase-like protein, a component of the vanD glycopeptide resistance cluster in Enterococcus faecium BM4339. Members of this CD are predominantly bacterial in origin.
Probab=22.10 E-value=1.7e+02 Score=21.56 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=30.7
Q ss_pred CC-HHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhh
Q psy639 51 WT-QQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 51 WT-eeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
++ -.=+..|...+...|-+...|+..|||++++..- -|.
T Consensus 207 ~~~H~lRHt~at~~~~~g~~~~~i~~~lGH~~~~tT~-~Y~ 246 (263)
T cd01196 207 VYPHSFRHLFAKNFLAKYNDLALLADLMGHESIETTR-IYL 246 (263)
T ss_pred CCchhhHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHH-HHH
Confidence 55 3445678887888999999999999999988884 443
No 73
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=21.90 E-value=1.3e+02 Score=22.89 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=29.6
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcC-CC
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLE-RR 80 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp-~K 80 (114)
...+.-+.+|+..|.+.+..||=.|.-++..-| |+
T Consensus 113 ~~~~~~~~eEI~~~~~~L~~~gi~~~dLv~~sPkh~ 148 (218)
T TIGR02895 113 EIENENRRLEILEYKKLLKQFGIEFVELVKVSPKHR 148 (218)
T ss_pred HHccccHHHHHHHHHHHHHHcCCcHHHHhhcCCCCH
Confidence 345567789999999999999999999888777 55
No 74
>cd01182 INT_REC_C DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family include the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many intergrase/recombinases also have N-terminal domains, which show little sequence or structure similarity.
Probab=21.85 E-value=1.9e+02 Score=18.41 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=28.8
Q ss_pred CCCHH-HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639 50 MWTQQ-EREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY 89 (114)
Q Consensus 50 ~WTee-E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y 89 (114)
.+|.. =+..|...+...|-+...|+..++|.+... ..+|
T Consensus 121 ~~~~h~lR~~~~~~~~~~g~~~~~~~~~~gH~~~~~-~~~Y 160 (162)
T cd01182 121 RLTPHDLRHTFATRLLEAGVPLEVIQELLGHSSIST-TERY 160 (162)
T ss_pred ccCcchhHHHHHHHHHHCCCCHHHHHHHhCCCCHHH-HHHh
Confidence 45444 355666777788888999999999998887 5554
No 75
>cd01183 INT_SG1_C INT_SG1, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 1, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinase and site-specific XerD recombinases. The members of this CD are found predominantly in proteobacteria. These proteins have not been biochemically characerised as yet.
Probab=21.43 E-value=1.8e+02 Score=20.34 Aligned_cols=38 Identities=5% Similarity=-0.024 Sum_probs=29.2
Q ss_pred CCCHH-HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHh
Q psy639 50 MWTQQ-EREVFRDKYIHHQKNFGLIASFLERRTPSDCVE 87 (114)
Q Consensus 50 ~WTee-E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~ 87 (114)
.+|.. =+..|...+...|-+-..|+..|+|+++.-...
T Consensus 155 ~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~~~~tT~~ 193 (196)
T cd01183 155 AASTHWLRHTHASHDLAAGVPLEHVQDNLGHASIDTTSR 193 (196)
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCChHHHHH
Confidence 45543 356777777788999999999999999876655
No 76
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.
Probab=20.87 E-value=1.6e+02 Score=21.78 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCCHH-HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639 50 MWTQQ-EREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY 89 (114)
Q Consensus 50 ~WTee-E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y 89 (114)
.||.. =+..|...+...|-+-..|+..|+|.+.+....|+
T Consensus 233 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~tt~~Y~ 273 (287)
T cd00799 233 SWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRYI 273 (287)
T ss_pred cccccccchhHHHHHHHcCCCHHHHHHHcCCCChHHHHHHH
Confidence 46653 35578888888999999999999999987766544
No 77
>cd01195 INT_Tn544B_C Tn544B and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes various bacterial transposases similar to TnpB from transposon Tn554.
Probab=20.78 E-value=1.9e+02 Score=20.28 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCHH-HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 51 WTQQ-EREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 51 WTee-E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
++.. =+..|...+...|-+-..|+..++|++.+-... |+.
T Consensus 145 ~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~-Y~~ 185 (195)
T cd01195 145 FHAHAFRHTVATRMINNGMPIHIIQKFLGHESPEMTSR-YAH 185 (195)
T ss_pred ccchhhhhHHHHHHHHcCCCHHHHHHHhCCCCHHHHHH-HHH
Confidence 4443 356788888889989999999999999877654 443
No 78
>PHA03397 vlf-1 very late expression factor 1; Provisional
Probab=20.46 E-value=1.9e+02 Score=23.88 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 55 EREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 55 E~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
=+..|...+...|-+...|+..|||.+++.. ..|..
T Consensus 303 LRHTFAt~Ll~~GvdL~~IqklLGHsSI~TT-~~Yln 338 (363)
T PHA03397 303 IRHYLASNMYNSGVPLQKVSKLMNHESVSAT-RHYLN 338 (363)
T ss_pred cHHHHHHHHHHCCCCHHHHHHHcCCCCHHHH-HHHHh
Confidence 4668989999999999999999999999977 44443
No 79
>COG2826 Tra8 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
Probab=20.46 E-value=1.4e+02 Score=24.45 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCccCCCCCCCCCCeeecCCCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHH
Q psy639 13 PPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCV 86 (114)
Q Consensus 13 P~m~~~~~~~~~~~~f~d~N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv 86 (114)
|-...||-.+.++-.=.|+|||+.. +++.......-|++|...-..-+...|. ..|+.||..|+.
T Consensus 246 ~vyfcdp~apWQRGtnENtNgliRr---f~PKgTdla~vt~~el~~i~~~lN~rPR------K~Lg~ktp~E~f 310 (318)
T COG2826 246 DVYFADPYASWQRGTNENTNGLIRR---FLPKGTDLAAVTQEELAAIADLLNHRPR------KCLGYKTPYEVF 310 (318)
T ss_pred ceEecCCCCchhcccccccccHHHH---hCCCCCchhhCCHHHHHHHHHHHhcCch------hhhCCCCHHHHH
Confidence 3334455443334444689999875 4445566678999999888888888874 578888888764
No 80
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=20.24 E-value=1.7e+02 Score=23.35 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=39.5
Q ss_pred ccCCCCCCCCCCeeecCCCCCc---CcHHHHHhchhCCCCCHHHHHHHHHHHhhcCC--ChHHHHhhc-------CCCCh
Q psy639 15 IICDPRHPFTGPRFINNNGRVT---DYEAEMRDRAQAKMWTQQEREVFRDKYIHHQK--NFGLIASFL-------ERRTP 82 (114)
Q Consensus 15 m~~~~~~~~~~~~f~d~N~lv~---dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K--~F~~Ia~~l-------p~Ks~ 82 (114)
|.+|..+ +...|. .+|-++ ||.+-......++.++++|.. ..|..||. ...+||..+ |-.|+
T Consensus 103 ~Qld~~~--RGFSf~-~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~---~i~~~yGee~~a~~iA~~Iv~~R~~~~~~tt 176 (296)
T PRK00050 103 PQLDDAE--RGFSFR-KDGPLDMRMDQSQGLTAAEVVNTYSEEELA---RIFKEYGEERFARRIARAIVEARPKKPITTT 176 (296)
T ss_pred cccCCCc--CCcccC-CCCCCcCCcCCCCCCCHHHHHhhCCHHHHH---HHHHHhcCcchHHHHHHHHHHHhccCCCCCH
Confidence 4456666 456664 355443 443322233678999999874 45555664 567787655 55566
Q ss_pred HHHHh
Q psy639 83 SDCVE 87 (114)
Q Consensus 83 ~ecv~ 87 (114)
.|.++
T Consensus 177 ~~L~~ 181 (296)
T PRK00050 177 GELAE 181 (296)
T ss_pred HHHHH
Confidence 66554
No 81
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=20.15 E-value=98 Score=18.90 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhhcCC-----------------ChHHHHhhc-----CCCChHHHHhHhhhccc
Q psy639 49 KMWTQQEREVFRDKYIHHQK-----------------NFGLIASFL-----ERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~K-----------------~F~~Ia~~l-----p~Ks~~ecv~~YY~~Kk 94 (114)
..||++|..+..+-+..|+. -|..|+..| +.||..++...|=.+|.
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 46999999999988877732 134554433 47888888877765554
Done!