Query psy639
Match_columns 114
No_of_seqs 112 out of 391
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 16:39:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_C Nuclear receptor corepr 100.0 3.3E-41 1.1E-45 226.2 7.6 93 5-99 2-94 (94)
2 2crg_A Metastasis associated p 99.9 1.7E-22 5.9E-27 128.5 4.5 57 45-101 5-62 (70)
3 2yqk_A Arginine-glutamic acid 99.8 7.4E-22 2.5E-26 123.2 4.9 52 48-99 9-61 (63)
4 2eqr_A N-COR1, N-COR, nuclear 99.8 1.6E-21 5.4E-26 120.8 5.6 55 43-97 7-61 (61)
5 2xag_B REST corepressor 1; ami 99.7 5.4E-19 1.8E-23 145.9 0.0 65 47-111 188-252 (482)
6 2iw5_B Protein corest, REST co 99.6 4.9E-15 1.7E-19 112.3 6.4 62 46-107 131-192 (235)
7 2xag_B REST corepressor 1; ami 99.3 1.5E-12 5E-17 107.7 6.4 61 48-108 380-440 (482)
8 2ltp_A Nuclear receptor corepr 98.6 1.5E-11 5.2E-16 80.8 0.0 61 47-107 15-75 (89)
9 2yus_A SWI/SNF-related matrix- 98.9 1.7E-09 5.7E-14 69.8 5.6 46 47-92 17-62 (79)
10 1wgx_A KIAA1903 protein; MYB D 98.9 2E-09 6.7E-14 68.7 5.5 47 48-94 8-58 (73)
11 2cu7_A KIAA1915 protein; nucle 98.9 3.5E-09 1.2E-13 66.6 5.4 45 48-92 9-53 (72)
12 4eef_G F-HB80.4, designed hema 98.8 1.3E-09 4.5E-14 69.5 2.3 46 46-91 18-67 (74)
13 2cqr_A RSGI RUH-043, DNAJ homo 98.7 7.9E-09 2.7E-13 65.8 4.2 46 47-92 17-66 (73)
14 2yum_A ZZZ3 protein, zinc fing 98.7 7.5E-09 2.6E-13 65.3 3.9 43 48-90 8-56 (75)
15 1x41_A Transcriptional adaptor 98.7 2E-08 6.9E-13 61.1 5.3 44 48-91 8-52 (60)
16 2elk_A SPCC24B10.08C protein; 98.7 3.1E-08 1.1E-12 60.0 5.5 43 48-90 9-53 (58)
17 1guu_A C-MYB, MYB proto-oncoge 98.6 6E-08 2.1E-12 57.0 5.5 44 48-91 3-47 (52)
18 1gvd_A MYB proto-oncogene prot 98.6 8.2E-08 2.8E-12 56.5 5.4 44 48-91 3-47 (52)
19 2d9a_A B-MYB, MYB-related prot 98.6 1E-07 3.6E-12 57.6 5.8 45 48-92 8-53 (60)
20 2cjj_A Radialis; plant develop 98.6 6.7E-08 2.3E-12 64.1 4.9 46 47-92 7-56 (93)
21 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.8E-07 6.2E-12 59.2 5.4 43 48-91 8-54 (72)
22 2dim_A Cell division cycle 5-l 98.4 5.4E-07 1.8E-11 56.0 5.9 45 48-92 9-54 (70)
23 1gv2_A C-MYB, MYB proto-oncoge 98.4 4.2E-07 1.4E-11 60.2 5.4 45 48-92 56-100 (105)
24 2llk_A Cyclin-D-binding MYB-li 98.4 6.3E-07 2.1E-11 56.9 5.3 48 47-95 22-69 (73)
25 1w0t_A Telomeric repeat bindin 98.4 8.8E-07 3E-11 52.3 5.5 45 49-93 3-50 (53)
26 2k9n_A MYB24; R2R3 domain, DNA 98.4 5.6E-07 1.9E-11 60.1 5.1 47 48-94 53-99 (107)
27 2din_A Cell division cycle 5-l 98.3 8E-07 2.7E-11 54.6 4.8 43 48-91 9-51 (66)
28 1h8a_C AMV V-MYB, MYB transfor 98.3 1E-06 3.6E-11 60.4 5.6 46 48-93 79-124 (128)
29 3osg_A MYB21; transcription-DN 98.3 9.4E-07 3.2E-11 60.7 4.8 48 48-95 62-109 (126)
30 1ity_A TRF1; helix-turn-helix, 98.1 4.9E-06 1.7E-10 51.5 5.7 47 46-92 8-57 (69)
31 3zqc_A MYB3; transcription-DNA 98.1 3.7E-06 1.3E-10 57.9 5.3 45 48-92 54-98 (131)
32 3sjm_A Telomeric repeat-bindin 98.1 5.2E-06 1.8E-10 51.2 5.2 45 48-92 11-58 (64)
33 1h89_C C-MYB, MYB proto-oncoge 98.1 4.9E-06 1.7E-10 58.8 5.6 46 48-93 110-155 (159)
34 1gv2_A C-MYB, MYB proto-oncoge 98.1 6E-06 2E-10 54.6 5.3 44 48-91 4-48 (105)
35 3osg_A MYB21; transcription-DN 98.1 6.4E-06 2.2E-10 56.4 5.5 46 46-91 9-54 (126)
36 2k9n_A MYB24; R2R3 domain, DNA 98.0 9.2E-06 3.1E-10 54.1 5.4 43 49-91 2-45 (107)
37 1h8a_C AMV V-MYB, MYB transfor 98.0 1.2E-05 4.1E-10 55.0 5.8 44 48-91 27-71 (128)
38 3zqc_A MYB3; transcription-DNA 97.8 1.6E-05 5.4E-10 54.7 4.2 43 49-91 3-46 (131)
39 1h89_C C-MYB, MYB proto-oncoge 97.7 6.1E-05 2.1E-09 53.1 5.5 44 48-91 58-102 (159)
40 2ckx_A NGTRF1, telomere bindin 97.6 9E-05 3.1E-09 47.9 4.8 45 50-94 2-51 (83)
41 1x58_A Hypothetical protein 49 97.4 0.00033 1.1E-08 43.1 5.1 48 47-94 7-57 (62)
42 2aje_A Telomere repeat-binding 97.1 0.00048 1.6E-08 46.3 4.2 53 43-95 8-65 (105)
43 2roh_A RTBP1, telomere binding 96.7 0.0028 9.4E-08 43.7 5.2 50 45-94 28-82 (122)
44 1ofc_X ISWI protein; nuclear p 96.6 0.003 1E-07 49.5 5.3 68 28-95 87-159 (304)
45 2juh_A Telomere binding protei 96.6 0.0027 9.1E-08 43.7 4.4 49 46-94 15-68 (121)
46 1ign_A Protein (RAP1); RAP1,ye 96.5 0.0026 8.8E-08 48.5 4.5 44 48-91 8-57 (246)
47 3hm5_A DNA methyltransferase 1 96.3 0.02 7E-07 37.6 7.1 55 39-93 21-80 (93)
48 4b4c_A Chromodomain-helicase-D 95.3 0.028 9.7E-07 40.6 5.2 46 46-91 5-55 (211)
49 2y9y_A Imitation switch protei 94.3 0.082 2.8E-06 42.5 5.9 67 29-95 101-173 (374)
50 4iej_A DNA methyltransferase 1 93.7 0.36 1.2E-05 31.6 7.2 54 39-92 21-79 (93)
51 1ug2_A 2610100B20RIK gene prod 93.5 0.17 5.8E-06 33.2 5.3 47 45-91 30-79 (95)
52 1irz_A ARR10-B; helix-turn-hel 92.4 0.28 9.5E-06 30.0 4.8 43 46-88 5-52 (64)
53 2lr8_A CAsp8-associated protei 84.1 0.22 7.5E-06 31.0 0.0 41 46-87 12-55 (70)
54 1fex_A TRF2-interacting telome 78.0 3.1 0.00011 24.4 3.8 43 48-90 2-54 (59)
55 2ebi_A DNA binding protein GT- 77.7 1.2 4.2E-05 27.7 2.1 40 48-87 4-57 (86)
56 2xb0_X Chromo domain-containin 76.7 4.7 0.00016 30.8 5.4 43 48-90 3-50 (270)
57 2d8c_A Phosphatidylcholine:cer 50.8 5.4 0.00019 25.7 1.1 62 46-107 15-79 (97)
58 1je8_A Nitrate/nitrite respons 47.6 29 0.00098 20.7 4.1 42 46-90 17-58 (82)
59 1x3u_A Transcriptional regulat 41.7 48 0.0017 18.9 4.8 41 48-91 14-54 (79)
60 1fse_A GERE; helix-turn-helix 41.5 46 0.0016 18.6 4.8 41 46-89 7-47 (74)
61 3c57_A Two component transcrip 38.7 50 0.0017 20.2 4.3 43 46-91 23-65 (95)
62 2o8x_A Probable RNA polymerase 38.2 51 0.0018 18.2 4.8 43 46-90 11-53 (70)
63 3nkh_A Integrase; alpha-fold, 37.7 45 0.0015 22.9 4.4 43 50-92 183-226 (244)
64 3bs7_A Protein aveugle; sterIl 35.1 17 0.00058 21.7 1.5 40 47-86 2-48 (78)
65 2rnj_A Response regulator prot 32.1 35 0.0012 20.6 2.7 43 46-91 25-67 (91)
66 1ku3_A Sigma factor SIGA; heli 29.6 78 0.0027 18.0 3.9 42 48-90 8-52 (73)
67 1ofc_X ISWI protein; nuclear p 29.4 38 0.0013 26.2 2.9 39 48-86 212-266 (304)
68 1wwv_A Connector enhancer of k 27.9 27 0.00092 22.0 1.6 24 46-71 9-36 (91)
69 2p7v_B Sigma-70, RNA polymeras 25.2 73 0.0025 17.8 3.1 42 49-91 4-48 (68)
70 3ulq_B Transcriptional regulat 24.4 1.2E+02 0.0042 18.3 4.6 31 46-78 25-55 (90)
71 2p64_A F-BOX/WD repeat protein 24.1 76 0.0026 18.3 2.9 25 46-70 14-38 (52)
72 3sub_A ADP-ribosylation factor 23.9 29 0.001 24.6 1.3 75 26-106 33-120 (163)
73 4b4c_A Chromodomain-helicase-D 23.5 72 0.0025 22.3 3.4 28 48-75 134-162 (211)
74 1aih_A HP1 integrase; DNA inte 22.3 1.3E+02 0.0046 19.3 4.4 42 50-92 109-151 (170)
75 3mzy_A RNA polymerase sigma-H 22.0 81 0.0028 19.9 3.2 44 46-92 104-148 (164)
76 1tty_A Sigma-A, RNA polymerase 21.7 1E+02 0.0035 18.2 3.4 43 48-91 16-61 (87)
77 3bs5_B Connector enhancer of k 21.6 18 0.0006 21.7 -0.2 40 47-86 3-49 (80)
78 1p4w_A RCSB; solution structur 20.8 1.4E+02 0.0047 18.6 4.0 43 47-92 31-73 (99)
79 1pk1_B Sex COMB on midleg CG94 20.8 30 0.001 21.7 0.8 44 46-89 12-62 (89)
No 1
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=100.00 E-value=3.3e-41 Score=226.24 Aligned_cols=93 Identities=52% Similarity=0.927 Sum_probs=68.5
Q ss_pred hhhcccCCCCccCCCCCCCCCCeeecCCCCCcCcHHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHH
Q psy639 5 RRHSLSVIPPIICDPRHPFTGPRFINNNGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSD 84 (114)
Q Consensus 5 ~~~~~A~IP~m~~~~~~~~~~~~f~d~N~lv~dp~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~e 84 (114)
+||++|+||||++|+++ +++.|+|+||||+||+++++.++.++.||++|+++|+++|.+|||+|++||++||+||++|
T Consensus 2 ~~r~~A~IP~m~~d~~~--~~~~f~d~n~lv~dp~~~~~~r~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~ 79 (94)
T 4a69_C 2 AMRQLAVIPPMLYDADQ--QRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAE 79 (94)
T ss_dssp ----------------------CCBCTTSBBSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHH
T ss_pred cchhcccCCCccCCHHH--HhheecccCCcccCHHHHHhccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Confidence 69999999999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhccccchHH
Q psy639 85 CVEYYYLSKKRENYK 99 (114)
Q Consensus 85 cv~~YY~~Kk~~~~k 99 (114)
||+|||+|||+.+||
T Consensus 80 cV~~YY~~Kk~~~Yk 94 (94)
T 4a69_C 80 CVLYYYLTKKNENYK 94 (94)
T ss_dssp HHHHHHHHSCC----
T ss_pred HHHHHhccccCcCCC
Confidence 999999999999986
No 2
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.86 E-value=1.7e-22 Score=128.49 Aligned_cols=57 Identities=25% Similarity=0.512 Sum_probs=53.2
Q ss_pred chhCCCCCHHHHHHHHHHHhhcCCChHHHHh-hcCCCChHHHHhHhhhccccchHHhh
Q psy639 45 RAQAKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENYKRA 101 (114)
Q Consensus 45 ~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~-~lp~Ks~~ecv~~YY~~Kk~~~~k~l 101 (114)
++.++.||++|+++|++++..|||||+.|+. +||+||++|||+|||+|||+.+|++.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y~q~ 62 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQ 62 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcCCchHHHH
Confidence 4678999999999999999999999999998 79999999999999999999998544
No 3
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.4e-22 Score=123.15 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHh-hcCCCChHHHHhHhhhccccchHH
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENYK 99 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~-~lp~Ks~~ecv~~YY~~Kk~~~~k 99 (114)
.+.||++|+++|++++.+|||||+.|+. +||+||++|||+|||+|||+.+.+
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~~~ 61 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTSGPS 61 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHCSSCCC
T ss_pred CCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccCCCCCC
Confidence 5789999999999999999999999998 799999999999999999998764
No 4
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=120.78 Aligned_cols=55 Identities=60% Similarity=1.126 Sum_probs=51.7
Q ss_pred HhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccch
Q psy639 43 RDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKREN 97 (114)
Q Consensus 43 ~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~ 97 (114)
++++..+.||++|+++|++++.+|||+|+.||.+||+||+.|||+|||+|||+.+
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~~n 61 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNEN 61 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCCCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcCCCC
Confidence 3567889999999999999999999999999999999999999999999999864
No 5
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.71 E-value=5.4e-19 Score=145.95 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=0.0
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhhhhhc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNMLMKE 111 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~~~k~ 111 (114)
..+.||++|+.+|+++|.+|||+|+.|+.+||+||+++||+|||+|||+.+|+++++++.+++||
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKKt~~yk~l~~~~~rr~kr 252 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKR 252 (482)
T ss_dssp -----------------------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccccccccHHHHHHHHHhhcCC
Confidence 45789999999999999999999999999999999999999999999999999999998877554
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.55 E-value=4.9e-15 Score=112.35 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=57.5
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNM 107 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~ 107 (114)
.....||++|+.+|.+++..|||+|..||..|++||..||++|||.||++.++.+++.....
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~ilke~ea 192 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEA 192 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34668999999999999999999999999999999999999999999999999999986643
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.33 E-value=1.5e-12 Score=107.67 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNML 108 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~~ 108 (114)
...||++|+.+|.+++..|||||..||..|++||+.||+.|||.+|++.++..++......
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld~il~e~e~~ 440 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAE 440 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhChHHHHHHHHHh
Confidence 5699999999999999999999999999999999999999999999999999999877443
No 8
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-11 Score=80.81 Aligned_cols=61 Identities=25% Similarity=0.523 Sum_probs=55.7
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccccchHHhhhhhhhh
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNM 107 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~ 107 (114)
....||+||-++|.+++..||.+|..||..||+||..+|.++|+...+..++..++....+
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~~~~~e~~~ 75 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKL 75 (89)
Confidence 3568999999999999999999999999999999999999999999999888888877543
No 9
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=69.77 Aligned_cols=46 Identities=15% Similarity=0.379 Sum_probs=42.8
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
....||++|..+|.+++..||.+|..||.+||+||..||.++|...
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999998654
No 10
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.91 E-value=2e-09 Score=68.71 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHhhhccc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~YY~~Kk 94 (114)
...||.+|..+|++++..||++ |..||..||+||..||+.+|-.-.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3579999999999999999985 9999999999999999999876533
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=3.5e-09 Score=66.61 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
...||+||.++|.+++..||.+|..||.+||+||..+|.++|+..
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998643
No 12
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.82 E-value=1.3e-09 Score=69.54 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=39.3
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCC----hHHHHhhcCCCChHHHHhHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKN----FGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~----F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
.....||.+|.++|+.++..||++ |.+||..||+||+.||+.+|=+
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345689999999999999999996 9999999999999999999844
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=7.9e-09 Score=65.76 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=41.8
Q ss_pred hCCCCCHHHHHHHHHHHhhcC----CChHHHHhhcCCCChHHHHhHhhhc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQ----KNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~----K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
....||.+|-.+|++++..|| ..|..||.+||+||..||.+.|...
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456899999999999999999 5799999999999999999998653
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=7.5e-09 Score=65.35 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHhhcC------CChHHHHhhcCCCChHHHHhHhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQ------KNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~------K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
...||+||.++|.+++..|| .+|..||.+||+||..||.+.|.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~ 56 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQ 56 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHH
Confidence 46899999999999999999 79999999999999999999983
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.72 E-value=2e-08 Score=61.08 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-.++.+++..|| .+|..||..||+||..||.+.|..
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~ 52 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 46899999999999999999 799999999999999999998854
No 16
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.69 E-value=3.1e-08 Score=59.97 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcC-CCChHHHHhHhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLE-RRTPSDCVEYYY 90 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp-~Ks~~ecv~~YY 90 (114)
...||++|-.++.+++..|| .+|..||..|| +||..||.+.|.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~ 53 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHH
Confidence 45799999999999999999 89999999999 999999998874
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.64 E-value=6e-08 Score=57.03 Aligned_cols=44 Identities=23% Similarity=0.470 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-+++.++...||. +|..||..||+||..||.+.|..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 368999999999999999998 99999999999999999998754
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.60 E-value=8.2e-08 Score=56.51 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-+++.++...||. +|..||..||+||-.||.+.|..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHH
Confidence 358999999999999999996 79999999999999999998864
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.59 E-value=1e-07 Score=57.59 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
...||+||-+++.++...|| .+|..||..||+||..||.+.|...
T Consensus 8 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 46899999999999999999 6999999999999999999998653
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.57 E-value=6.7e-08 Score=64.07 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=40.8
Q ss_pred hCCCCCHHHHHHHHHHHhhcC----CChHHHHhhcCCCChHHHHhHhhhc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQ----KNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~----K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
....||.+|-.+|++++..|| ..|..||..||+||..||.++|-..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346899999999999999997 4599999999999999999998654
No 21
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=1.8e-07 Score=59.22 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----ChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK----NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K----~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||.+|.++|++++..||+ .|.+||+.| +||..||+.+|=.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~ 54 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHH
Confidence 457999999999999999984 489999998 7999999998743
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.4e-07 Score=56.05 Aligned_cols=45 Identities=22% Similarity=0.525 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
...||++|-++..++...|| .+|..||..||+||-.||.+.|...
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45899999999999999999 7999999999999999999988653
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.40 E-value=4.2e-07 Score=60.24 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
...||+||-.++.+++..||.+|..||..||+||-.+|.+.|+..
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999764
No 24
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.37 E-value=6.3e-07 Score=56.91 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=44.2
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcccc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKR 95 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~ 95 (114)
....||+||-++..+.+.+||..|..||..| +||-.+|.+.|+.-++.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999 99999999999877664
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.36 E-value=8.8e-07 Score=52.30 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHhhcC-CChHHHHhhcC--CCChHHHHhHhhhcc
Q psy639 49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFLE--RRTPSDCVEYYYLSK 93 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp--~Ks~~ecv~~YY~~K 93 (114)
..||+||-++..++...|| .+|..||..+| +||..||.+-|....
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999 69999999999 999999998876543
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.35 E-value=5.6e-07 Score=60.11 Aligned_cols=47 Identities=17% Similarity=0.431 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhccc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk 94 (114)
...||+||-.++.+++..||.+|..||..||+||-.+|.+.|+...+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999998876543
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=8e-07 Score=54.65 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-+++.+....+|.+|..||. +++||..||.+.|..
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~ 51 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEF 51 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHH
Confidence 4689999999999999999999999999 888999999998865
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.30 E-value=1e-06 Score=60.36 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSK 93 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~K 93 (114)
...||+||-.++.+++..||.+|..||..||+||-.+|.+.|+..-
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999998653
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.27 E-value=9.4e-07 Score=60.65 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcccc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKR 95 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~Kk~ 95 (114)
...||+||-+++.+++..||.+|..||..||+||-.+|.+.|+...+.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999999999999999999999875443
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.14 E-value=4.9e-06 Score=51.53 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=42.5
Q ss_pred hhCCCCCHHHHHHHHHHHhhcC-CChHHHHhhcC--CCChHHHHhHhhhc
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQ-KNFGLIASFLE--RRTPSDCVEYYYLS 92 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp--~Ks~~ecv~~YY~~ 92 (114)
.....||+||-++..++...|| .+|..||..+| +||-.||.+.|...
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 4467899999999999999999 69999999999 99999999988654
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.12 E-value=3.7e-06 Score=57.95 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
...||+||-+++.+++..||..|..||..||+||-.+|.+.|+..
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999998764
No 32
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.11 E-value=5.2e-06 Score=51.16 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CChHHHHhhcC--CCChHHHHhHhhhc
Q psy639 48 AKMWTQQEREVFRDKYIHHQ-KNFGLIASFLE--RRTPSDCVEYYYLS 92 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp--~Ks~~ecv~~YY~~ 92 (114)
...||+||-++..++...|| .+|..||..+| +||-.||.+-|...
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999 59999999876 99999999888654
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.09 E-value=4.9e-06 Score=58.84 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhcc
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSK 93 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~K 93 (114)
...||++|-.++.+++.+||..|..||..||+||-.+|.+.|+..-
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred ccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999988653
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.07 E-value=6e-06 Score=54.58 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-++..+++..||. +|..||..||+||..+|.+.|..
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence 357999999999999999996 79999999999999999998865
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.06 E-value=6.4e-06 Score=56.43 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=42.5
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
.....||+||-++..++...||.+|..||..||+||..||.+.|..
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 3456899999999999999999999999999999999999998875
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.01 E-value=9.2e-06 Score=54.10 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639 49 KMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
..||+||-++..++...||. +|..||..||+||..||.+.|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 47999999999999999996 99999999999999999988754
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.99 E-value=1.2e-05 Score=54.97 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-+...+++..||. +|..||..||+||..+|.+.|..
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 468999999999999999995 79999999999999999998865
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.83 E-value=1.6e-05 Score=54.72 Aligned_cols=43 Identities=28% Similarity=0.548 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHhhcC-CChHHHHhhcCCCChHHHHhHhhh
Q psy639 49 KMWTQQEREVFRDKYIHHQ-KNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~~~~-K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
..||+||-++..++...|| .+|..||..||+||..||.+.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 5799999999999999999 789999999999999999998854
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.69 E-value=6.1e-05 Score=53.13 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-++..+++..||. +|..||..||+||-.+|.+.|..
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 468999999999999999995 79999999999999999998864
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.60 E-value=9e-05 Score=47.89 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHhhcCC-ChHHHHhh----cCCCChHHHHhHhhhccc
Q psy639 50 MWTQQEREVFRDKYIHHQK-NFGLIASF----LERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 50 ~WTeeE~~~F~~~~~~~~K-~F~~Ia~~----lp~Ks~~ecv~~YY~~Kk 94 (114)
.||+||-+...++...||. +|..|+.. +++||-.+|-+.|-...+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 6999999999999999998 99999885 899999999998866544
No 41
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.38 E-value=0.00033 Score=43.10 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=41.2
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHH---hhcCCCChHHHHhHhhhccc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIA---SFLERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia---~~lp~Ks~~ecv~~YY~~Kk 94 (114)
....||+||.+...+++.+||++|..|+ .+++.||--++-.=|..-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 4568999999999999999999999998 58899999999866655443
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.13 E-value=0.00048 Score=46.33 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=45.1
Q ss_pred HhchhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhc----CCCChHHHHhHhhhcccc
Q psy639 43 RDRAQAKMWTQQEREVFRDKYIHHQK-NFGLIASFL----ERRTPSDCVEYYYLSKKR 95 (114)
Q Consensus 43 ~~~~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~l----p~Ks~~ecv~~YY~~Kk~ 95 (114)
..+.....||+||-+...++...||. +|..|+..+ ++||-.+|-.-|....+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34466789999999999999999998 999998855 899999999988776554
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.69 E-value=0.0028 Score=43.66 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=43.1
Q ss_pred chhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhc----CCCChHHHHhHhhhccc
Q psy639 45 RAQAKMWTQQEREVFRDKYIHHQK-NFGLIASFL----ERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 45 ~~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~l----p~Ks~~ecv~~YY~~Kk 94 (114)
+.....||+||-+...++...||. +|..|+..+ ++||-.||-.-|-...+
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 356779999999999999999998 999998763 89999999987766543
No 44
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.57 E-value=0.003 Score=49.48 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=53.6
Q ss_pred eecCCCCCcCcHHHHHhc---hhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhcCCCChHHHHhHhhh-cccc
Q psy639 28 FINNNGRVTDYEAEMRDR---AQAKMWTQQEREVFRDKYIHHQK-NFGLIASFLERRTPSDCVEYYYL-SKKR 95 (114)
Q Consensus 28 f~d~N~lv~dp~~~~~~~---~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~lp~Ks~~ecv~~YY~-~Kk~ 95 (114)
.+|+...+++.....++. ..-..||-.|-..|..+...||. ++..||..|++||..|+..||=. |++-
T Consensus 87 ~id~~~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 87 KIDEAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp HHHTCCCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred ccccCCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 344455555555555554 56668999999999999999999 89999999999999999988833 6654
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.56 E-value=0.0027 Score=43.68 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=43.1
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhc----CCCChHHHHhHhhhccc
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQK-NFGLIASFL----ERRTPSDCVEYYYLSKK 94 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K-~F~~Ia~~l----p~Ks~~ecv~~YY~~Kk 94 (114)
.....||+||-+...++...||. .|..|+..+ ++||-.||-..|-...+
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 55678999999999999999998 999998874 89999999988766544
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.52 E-value=0.0026 Score=48.52 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC------hHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQKN------FGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~------F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...||+||-++-.+....+|.. |..||..||+||-.+|.+.|..
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 4589999999999999999885 9999999999999999999865
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.25 E-value=0.02 Score=37.57 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=46.3
Q ss_pred HHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhc-----CCCChHHHHhHhhhcc
Q psy639 39 EAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFL-----ERRTPSDCVEYYYLSK 93 (114)
Q Consensus 39 ~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~l-----p~Ks~~ecv~~YY~~K 93 (114)
-..|...-....||.||-....+....|+-.|..|+... +.||+.++.+-||.--
T Consensus 21 ~eeY~~~L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 21 EQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 345554445589999999999999999999999999988 5899999998888643
No 48
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.26 E-value=0.028 Score=40.64 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=37.2
Q ss_pred hhCCCCCHHHHHHHHHHHhhcC---CChHHHHh--hcCCCChHHHHhHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQ---KNFGLIAS--FLERRTPSDCVEYYYL 91 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~---K~F~~Ia~--~lp~Ks~~ecv~~YY~ 91 (114)
..+..||+.|...|..++..|| ..+..|+. .|..||..++-.||-.
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~ 55 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGEL 55 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4578899999999999999999 46788864 4889999998887754
No 49
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.25 E-value=0.082 Score=42.47 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=52.5
Q ss_pred ecCCCCCcCcHHHHHhc---hhCCCCCHHHHHHHHHHHhhcCCC-hHHHHhhcC-CCChHHHHhHhh-hcccc
Q psy639 29 INNNGRVTDYEAEMRDR---AQAKMWTQQEREVFRDKYIHHQKN-FGLIASFLE-RRTPSDCVEYYY-LSKKR 95 (114)
Q Consensus 29 ~d~N~lv~dp~~~~~~~---~~~~~WTeeE~~~F~~~~~~~~K~-F~~Ia~~lp-~Ks~~ecv~~YY-~~Kk~ 95 (114)
+|+...+++.....+.. ..-..||--|=..|..+...||.+ +..||..|+ +||..|+..|+= .|++-
T Consensus 101 id~~~~LTeEE~~EKe~LL~eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 101 VNNSQPLTEEEEKMKADWESEGFTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp HTCCSSSCHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred ccccCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 34444455555555544 677799999999999999999995 999999998 999999998883 36654
No 50
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.67 E-value=0.36 Score=31.57 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=44.4
Q ss_pred HHHHHhchhCCCCCHHHHHHHHHHHhhcCCChHHHHhhc-----CCCChHHHHhHhhhc
Q psy639 39 EAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFL-----ERRTPSDCVEYYYLS 92 (114)
Q Consensus 39 ~~~~~~~~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~l-----p~Ks~~ecv~~YY~~ 92 (114)
-..|...-..+.||.||-....+.-..|.--|..|+... +.||+.|+.+-||.-
T Consensus 21 ~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 21 EQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp HHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 345554444578999999999999999999999998865 379999999988863
No 51
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.48 E-value=0.17 Score=33.20 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=39.9
Q ss_pred chhCCCCCHHHHHHHHHHHhhc---CCChHHHHhhcCCCChHHHHhHhhh
Q psy639 45 RAQAKMWTQQEREVFRDKYIHH---QKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 45 ~~~~~~WTeeE~~~F~~~~~~~---~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
...+..||.+|=......+.+- ++-|..||+.|++||..|+-+-+|.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH
Confidence 3667899999998998888887 5599999999999999999865553
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.35 E-value=0.28 Score=29.98 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=31.8
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCC---hHHHHhhc--CCCChHHHHhH
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKN---FGLIASFL--ERRTPSDCVEY 88 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~---F~~Ia~~l--p~Ks~~ecv~~ 88 (114)
...-.||+|.++.|.+++.+.|-+ ...|.+.| ++.|..++-.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSH 52 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH 52 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHH
Confidence 345689999999999999999966 35676664 45666655433
No 53
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=84.12 E-value=0.22 Score=31.01 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=34.3
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCC---ChHHHHhhcCCCChHHHHh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQK---NFGLIASFLERRTPSDCVE 87 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K---~F~~Ia~~lp~Ks~~ecv~ 87 (114)
..+..||.||=+.....+.+-|- -|..||..| +||..|+-+
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~ 55 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSE 55 (70)
Confidence 56789999998888888876555 999999999 899998754
No 54
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=77.96 E-value=3.1 Score=24.45 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhc--------C-CChHHHHh-hcCCCChHHHHhHhh
Q psy639 48 AKMWTQQEREVFRDKYIHH--------Q-KNFGLIAS-FLERRTPSDCVEYYY 90 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~--------~-K~F~~Ia~-~lp~Ks~~ecv~~YY 90 (114)
...||+||=.+-.+-+..| | +-|..++. .+|..|..+|.+-|-
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~ 54 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYL 54 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHH
Confidence 4689999999999888888 4 34566788 799999999988773
No 55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=77.74 E-value=1.2 Score=27.66 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----------ChHHHHhhcC----CCChHHHHh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK----------NFGLIASFLE----RRTPSDCVE 87 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K----------~F~~Ia~~lp----~Ks~~ecv~ 87 (114)
...||++|..++.+.+...-. -|..||..|. .+|..||-.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~ 57 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTD 57 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 468999999999998875333 4667877653 799999975
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=76.67 E-value=4.7 Score=30.77 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---ChHHHHh--hcCCCChHHHHhHhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQK---NFGLIAS--FLERRTPSDCVEYYY 90 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K---~F~~Ia~--~lp~Ks~~ecv~~YY 90 (114)
...||+.|+..|..+|..||- -+..|+. .|+.|+..++...|=
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 457999999999999999994 6778853 599999998887774
No 57
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=50.81 E-value=5.4 Score=25.70 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=40.7
Q ss_pred hhCCCCCHHHHHHHHH--HHhhcCCChHHH-HhhcCCCChHHHHhHhhhccccchHHhhhhhhhh
Q psy639 46 AQAKMWTQQEREVFRD--KYIHHQKNFGLI-ASFLERRTPSDCVEYYYLSKKRENYKRAIPTNNM 107 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~--~~~~~~K~F~~I-a~~lp~Ks~~ecv~~YY~~Kk~~~~k~l~~~~~~ 107 (114)
..+..||.+|+..+.+ +|.+|-..|..| ...|..-|..+...+-..-+....-+.++.+-+.
T Consensus 15 ~~v~~Ws~edV~~WL~~~Gl~~Y~~~F~~IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~ 79 (97)
T 2d8c_A 15 KEVVYWSPKKVADWLLENAMPEYCEPLEHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIET 79 (97)
T ss_dssp SCCSSCCTTHHHHHHHHTTCTTTTTTTTTCCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHHHcCCHHHHHHHHcCCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 5567899999999998 466788888546 5667777777777743333333444444444333
No 58
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=47.60 E-value=29 Score=20.71 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=30.7
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
......|+.|+++|.- + ..|.....||..++- |.+-+-.+..
T Consensus 17 ~~~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~ 58 (82)
T 1je8_A 17 RDVNQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVK 58 (82)
T ss_dssp CCGGGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHH
Confidence 4456799999999988 4 789999999998863 4444444433
No 59
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.65 E-value=48 Score=18.90 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
.+..|+.|+++|.- + ..|.....||..++- |.+-+-.+.+.
T Consensus 14 l~~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r 54 (79)
T 1x3u_A 14 LQTLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRAN 54 (79)
T ss_dssp HHHHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 34579999999987 5 789999999998864 44444444444
No 60
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.49 E-value=46 Score=18.61 Aligned_cols=41 Identities=27% Similarity=0.185 Sum_probs=29.9
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYY 89 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~Y 89 (114)
......|+.|.++|.- + ..|.....||..++- |.+-+-.+.
T Consensus 7 ~~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~ 47 (74)
T 1fse_A 7 QSKPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHI 47 (74)
T ss_dssp -CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHH
Confidence 4467899999999987 4 788999999998764 444443333
No 61
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.74 E-value=50 Score=20.18 Aligned_cols=43 Identities=16% Similarity=0.014 Sum_probs=30.0
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
......|+.|+++|.- + ..|.....||..|+- |.+-+-.+.+.
T Consensus 23 ~~l~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r 65 (95)
T 3c57_A 23 DPLSGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSR 65 (95)
T ss_dssp ----CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 4567899999999998 4 899999999998865 44444444443
No 62
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=38.19 E-value=51 Score=18.18 Aligned_cols=43 Identities=9% Similarity=-0.098 Sum_probs=32.0
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
...+.+++.++++|.-.| ..|..+..||..++- |.+.+-...+
T Consensus 11 ~~l~~L~~~~r~il~l~~-~~g~s~~eIA~~lgi-s~~tv~~~~~ 53 (70)
T 2o8x_A 11 TMIADLTTDQREALLLTQ-LLGLSYADAAAVCGC-PVGTIRSRVA 53 (70)
T ss_dssp TTTTSSCHHHHHHHHHHH-TSCCCHHHHHHHHTS-CHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH-HcCCCHHHHHHHHCc-CHHHHHHHHH
Confidence 556789999999998766 578999999998864 5544444333
No 63
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=37.74 E-value=45 Score=22.94 Aligned_cols=43 Identities=7% Similarity=-0.008 Sum_probs=34.8
Q ss_pred CCCHHH-HHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 50 MWTQQE-REVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 50 ~WTeeE-~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
.+|.-. +..|...+...|-+-..|+..++|.+.....+.|-..
T Consensus 183 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~~Y~~~ 226 (244)
T 3nkh_A 183 EVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHV 226 (244)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred CceeecchHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Confidence 566654 5578888889999999999999999998776777653
No 64
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=35.07 E-value=17 Score=21.67 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=29.3
Q ss_pred hCCCCCHHHHHHHHHHH----hhcCCChHH--H-HhhcCCCChHHHH
Q psy639 47 QAKMWTQQEREVFRDKY----IHHQKNFGL--I-ASFLERRTPSDCV 86 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~----~~~~K~F~~--I-a~~lp~Ks~~ecv 86 (114)
.+..||.++...+.+.+ .+|-..|.. | ...|..-|..+..
T Consensus 2 ~v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~ 48 (78)
T 3bs7_A 2 AVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ 48 (78)
T ss_dssp CGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHH
T ss_pred ChhhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHh
Confidence 35689999999999874 567777743 4 5667777777665
No 65
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=32.14 E-value=35 Score=20.55 Aligned_cols=43 Identities=19% Similarity=-0.049 Sum_probs=31.5
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
......|+.|+++|.- + ..|.....||..|+- |.+-+-.+.+.
T Consensus 25 ~~l~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r 67 (91)
T 2rnj_A 25 ELYEMLTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSN 67 (91)
T ss_dssp CTGGGCCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 4556789999999987 4 789999999998864 44444444443
No 66
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.60 E-value=78 Score=17.97 Aligned_cols=42 Identities=7% Similarity=0.065 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCChHHHHhhcCCCChHHHHhHhh
Q psy639 48 AKMWTQQEREVFRDKYIH---HQKNFGLIASFLERRTPSDCVEYYY 90 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~---~~K~F~~Ia~~lp~Ks~~ecv~~YY 90 (114)
.+.-++.|+++|.-.|.. .|..+..||..++- |.+-+-...+
T Consensus 8 l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ 52 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIEN 52 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHH
Confidence 455699999999998863 78999999998763 4444433333
No 67
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=29.36 E-value=38 Score=26.20 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----ChHHHHh------------hcCCCChHHHH
Q psy639 48 AKMWTQQEREVFRDKYIHHQK----NFGLIAS------------FLERRTPSDCV 86 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~K----~F~~Ia~------------~lp~Ks~~ecv 86 (114)
...||++|-..+.-++..||- +|..|.. ++-++|..++-
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~ 266 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQ 266 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 357999999999999999997 5777852 45677777653
No 68
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=27.88 E-value=27 Score=21.99 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=18.9
Q ss_pred hhCCCCCHHHHHHHHHHH----hhcCCChH
Q psy639 46 AQAKMWTQQEREVFRDKY----IHHQKNFG 71 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~----~~~~K~F~ 71 (114)
..+..||++++..+.+++ .+| .|.
T Consensus 9 ~~v~~Wt~~~V~~WL~~l~~~l~~Y--~F~ 36 (91)
T 1wwv_A 9 EPVETWTPGKVATWLRGLDDSLQDY--PFE 36 (91)
T ss_dssp CCTTTCCTTTHHHHHHHHCHHHHTS--CHH
T ss_pred CccccCCHHHHHHHHHhcCCccccc--cHH
Confidence 456789999999999954 567 683
No 69
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.23 E-value=73 Score=17.84 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHh---hcCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 49 KMWTQQEREVFRDKYI---HHQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 49 ~~WTeeE~~~F~~~~~---~~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
+.-++.|+++|.-.|. ..|..+..||..++- |.+-+-...+.
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgi-s~~tV~~~~~r 48 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV-TRERIRQIEAK 48 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 4568999999998884 479999999998763 44444444444
No 70
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.45 E-value=1.2e+02 Score=18.30 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=23.2
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCChHHHHhhcC
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNFGLIASFLE 78 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp 78 (114)
.....-|+.|+++|.-.. .|.....||..|+
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~ 55 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE--KGFTNQEIADALH 55 (90)
T ss_dssp ----CCCHHHHHHHHHHH--TTCCHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHH--cCCCHHHHHHHHC
Confidence 556778999999997644 8999999998876
No 71
>2p64_A F-BOX/WD repeat protein 1A; right handed super-helical bundle, ligase; 2.50A {Homo sapiens}
Probab=24.10 E-value=76 Score=18.28 Aligned_cols=25 Identities=12% Similarity=0.396 Sum_probs=19.4
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCCh
Q psy639 46 AQAKMWTQQEREVFRDKYIHHQKNF 70 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~~~~~K~F 70 (114)
.....|++.|..-|.+.+...=-.|
T Consensus 14 ~~f~~Wse~eQvdfv~~L~~rm~hy 38 (52)
T 2p64_A 14 KYFEQWSESDQVEFVEHLISQMCHY 38 (52)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTSCHH
T ss_pred HHHHhccchHHHHHHHHHHHHhhHH
Confidence 5678999999999999887654433
No 72
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=23.85 E-value=29 Score=24.57 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=44.6
Q ss_pred CeeecCC-C--CCcCcHHHHHhc---------hhCCCCCHHHHHHHHHHHhhcCCChHHH-HhhcCCCChHHHHhHhhhc
Q psy639 26 PRFINNN-G--RVTDYEAEMRDR---------AQAKMWTQQEREVFRDKYIHHQKNFGLI-ASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 26 ~~f~d~N-~--lv~dp~~~~~~~---------~~~~~WTeeE~~~F~~~~~~~~K~F~~I-a~~lp~Ks~~ecv~~YY~~ 92 (114)
..|...| | +|.++..+|... -.++.||++|.+.+...--.. +..+ .+..+... .+..+|..
T Consensus 33 P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~---an~~~e~~g~~~~---~p~~KY~s 106 (163)
T 3sub_A 33 PDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKK---CQTYLENYGISDF---IPERKYRT 106 (163)
T ss_dssp CCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHH---HHHHHHHTTCTTS---CHHHHTTB
T ss_pred CCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHH---HHHHHHHcCCccc---ChhhcCCC
Confidence 4566655 2 455677777642 356789999998764321111 1111 22222222 24578999
Q ss_pred cccchHHhhhhhhh
Q psy639 93 KKRENYKRAIPTNN 106 (114)
Q Consensus 93 Kk~~~~k~l~~~~~ 106 (114)
+-...|+..|++.-
T Consensus 107 ~aA~~Yr~~L~~~v 120 (163)
T 3sub_A 107 KAADHYRKILRSIV 120 (163)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98888998887653
No 73
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=23.52 E-value=72 Score=22.26 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHhhcC-CChHHHHh
Q psy639 48 AKMWTQQEREVFRDKYIHHQ-KNFGLIAS 75 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~~~-K~F~~Ia~ 75 (114)
...||++|=.....++..|| .+|..|..
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44699999999999999999 88998854
No 74
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=22.31 E-value=1.3e+02 Score=19.26 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=31.3
Q ss_pred CCCHHH-HHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 50 MWTQQE-REVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 50 ~WTeeE-~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
.+|... +..|...+...|-+-..|+..++|++..-.- .|...
T Consensus 109 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~-~Y~~~ 151 (170)
T 1aih_A 109 GQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTM-RYAHF 151 (170)
T ss_dssp TCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHG-GGGGG
T ss_pred CCcchHhHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHH-HHHhC
Confidence 455444 6678888888999999999999999977544 55443
No 75
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.03 E-value=81 Score=19.89 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=32.2
Q ss_pred hhCC-CCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 46 AQAK-MWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 46 ~~~~-~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
..+. .=++.++.+|. +...|..+.-||..++- |.+.+-...+.-
T Consensus 104 ~~l~~~L~~~~r~v~~--~~~~g~s~~EIA~~lgi-s~~tV~~~~~ra 148 (164)
T 3mzy_A 104 KFSENNFSKFEKEVLT--YLIRGYSYREIATILSK-NLKSIDNTIQRI 148 (164)
T ss_dssp HHHHHHSCHHHHHHHH--HHTTTCCHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHH--HHHcCCCHHHHHHHHCC-CHHHHHHHHHHH
Confidence 3444 77899999998 46789999999999873 566555554443
No 76
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=21.71 E-value=1e+02 Score=18.24 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCChHHHHhhcCCCChHHHHhHhhh
Q psy639 48 AKMWTQQEREVFRDKYIH---HQKNFGLIASFLERRTPSDCVEYYYL 91 (114)
Q Consensus 48 ~~~WTeeE~~~F~~~~~~---~~K~F~~Ia~~lp~Ks~~ecv~~YY~ 91 (114)
.+.=++.|+++|.-.|.. .|..+.-||..++ -|.+-+-...+.
T Consensus 16 l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lg-is~~tV~~~~~r 61 (87)
T 1tty_A 16 LKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFN-VTRERIRQIEVK 61 (87)
T ss_dssp HTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHT-CCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHC-CCHHHHHHHHHH
Confidence 345689999999998864 7899999999875 344444444443
No 77
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=21.60 E-value=18 Score=21.71 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=27.7
Q ss_pred hCCCCCHHHHHHHHHHH----hhcCCChHH--H-HhhcCCCChHHHH
Q psy639 47 QAKMWTQQEREVFRDKY----IHHQKNFGL--I-ASFLERRTPSDCV 86 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~----~~~~K~F~~--I-a~~lp~Ks~~ecv 86 (114)
.+..||.++...+.+++ .+|-..|.. | ...|..-|..+..
T Consensus 3 ~v~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~ 49 (80)
T 3bs5_B 3 PVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE 49 (80)
T ss_dssp CGGGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHH
T ss_pred ccccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHH
Confidence 35689999999999875 466767733 4 4555566666654
No 78
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.84 E-value=1.4e+02 Score=18.56 Aligned_cols=43 Identities=21% Similarity=0.064 Sum_probs=30.8
Q ss_pred hCCCCCHHHHHHHHHHHhhcCCChHHHHhhcCCCChHHHHhHhhhc
Q psy639 47 QAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLS 92 (114)
Q Consensus 47 ~~~~WTeeE~~~F~~~~~~~~K~F~~Ia~~lp~Ks~~ecv~~YY~~ 92 (114)
....-|+.|+++|.- ...|.....||..|+- |.+-+-.+.+.-
T Consensus 31 ~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~i-S~~TV~~~l~ri 73 (99)
T 1p4w_A 31 GDKRLSPKESEVLRL--FAEGFLVTEIAKKLNR-SIKTISSQKKSA 73 (99)
T ss_dssp SSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 356789999999965 3589999999998865 554444444443
No 79
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=20.79 E-value=30 Score=21.66 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=30.9
Q ss_pred hhCCCCCHHHHHHHHHHH----hhcCCChHH--H-HhhcCCCChHHHHhHh
Q psy639 46 AQAKMWTQQEREVFRDKY----IHHQKNFGL--I-ASFLERRTPSDCVEYY 89 (114)
Q Consensus 46 ~~~~~WTeeE~~~F~~~~----~~~~K~F~~--I-a~~lp~Ks~~ecv~~Y 89 (114)
..+..||.+|+..|.+.+ ..|...|.. | ...|..-|-.+++.+.
T Consensus 12 ~~v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~m 62 (89)
T 1pk1_B 12 SQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYM 62 (89)
T ss_dssp CCGGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHS
T ss_pred CCchhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHcc
Confidence 456689999999999876 357777743 5 5555566666666543
Done!