RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy639
(114 letters)
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 63.0 bits (153), Expect = 2e-15
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 32 NGRVTDYEAEMRDRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYL 91
NG + D +DR MW++QE+E FR+K++ H KNFGLIASFLER+T ++CV YYYL
Sbjct: 1 NGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 60
Query: 92 SKKRENYK 99
+KK ENYK
Sbjct: 61 TKKNENYK 68
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 58.3 bits (141), Expect = 1e-13
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIAS-FLERRTPSDCVEYYYLSKKRENYKR 100
W+ E +F + + K+F I FL ++ + +EYYY+ K + Y +
Sbjct: 4 WSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQ 54
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 47.5 bits (113), Expect = 2e-09
Identities = 7/52 (13%), Positives = 22/52 (42%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKRAI 102
WT +E+ + + ++F I+ + ++ ++ ++R N +
Sbjct: 8 WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVL 59
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 38.3 bits (89), Expect = 9e-06
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYK 99
WT +E+E+F + + I+ + RT Y K +
Sbjct: 5 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 47
Score = 32.9 bits (75), Expect = 7e-04
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 51 WTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKK 94
WT++E + + + IA L RT + ++ + +
Sbjct: 4 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 30.8 bits (69), Expect = 0.006
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 43 RDRAQAKMWTQQEREVFRDKYIHHQK----NFGLIASFLERRTPSDCVEYYYL 91
R R+ + WTQ ++++ + + + IA + ++ DC+ Y L
Sbjct: 7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 59
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 29.3 bits (66), Expect = 0.015
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 51 WTQQEREVFRDKY-IHHQKNFGLIASFLERRTPSDCVEYYY 90
WT++E + + K + +IA L+ R C E ++
Sbjct: 6 WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 86
Score = 29.5 bits (66), Expect = 0.030
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 51 WTQQEREVFRDKYIHH------QKNFGLIASFLERRTPSDCVEYY--YLSKK 94
+T +E E D + + I+ ++ T + + YLSK+
Sbjct: 4 FTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 28.7 bits (64), Expect = 0.065
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 48 AKMWTQQEREVFRDKYIH---HQKNFGLIASFLERRTPSDC 85
+WT++ V F +I+ L +TP +
Sbjct: 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEV 73
>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 205
Score = 26.1 bits (57), Expect = 0.89
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 5 RRHSLSVIPPIICDPRHPFTGPRFINNNG 33
++ P++ P T FI +
Sbjct: 22 HEEIFPLLYPMLLLPSKVRT---FIRSGR 47
>d1xdpa2 d.322.1.2 (A:107-314) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 208
Score = 24.9 bits (54), Expect = 2.5
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 5 RRHSLSVIPPIICDPRHPFTGPRFINNNG 33
+++ I PI+ +P +F+ ++
Sbjct: 22 KQYLRQHITPILINPDTDL--VQFLKDDY 48
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 511
Score = 24.3 bits (52), Expect = 4.6
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 44 DRAQAKMWTQQEREVFRDKYIHHQKNFGLIASFLERRTPSDCVEYYYLSKKRENYKR--- 100
D Q + +F DK + + N G + S R + Y+Y + N K
Sbjct: 214 DNCQDIVK-----AIFGDKEFNSKHNVGAVNSINWARILAQMTYYFYSFFQATNGKDSKK 268
Query: 101 ---AIPTNNMLM 109
+P+ N
Sbjct: 269 VKFVVPSGNFGD 280
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,018
Number of extensions: 19720
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 14
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)