BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6392
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F84|A Chain A, Structure Of Fusion Complex Of Major Pilin Cfab And Major
           Pilin Cfab Of CfaI PILUS FROM ETEC E. COLI
 pdb|3F84|B Chain B, Structure Of Fusion Complex Of Major Pilin Cfab And Major
           Pilin Cfab Of CfaI PILUS FROM ETEC E. COLI
          Length = 312

 Score = 27.7 bits (60), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 72  GADNFKAKINIEVQWTSEPVIAAIERNGEAIP 103
           G+DN + + NI V  + +PVI  ++ +G A+P
Sbjct: 133 GSDNKQVEKNITVTASVDPVIELLQADGNALP 164


>pdb|3F85|A Chain A, Structure Of Fusion Complex Of Homo Trimeric Major Pilin
           Subunits Cfab Of CfaI FIMBIRAE FROM ETEC E. COLI
          Length = 463

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 72  GADNFKAKINIEVQWTSEPVIAAIERNGEAIP 103
           G+DN + + NI V  + +PVI  ++ +G A+P
Sbjct: 133 GSDNKQVEKNITVTASVDPVIDLLQADGNALP 164



 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 72  GADNFKAKINIEVQWTSEPVIAAIERNGEAIP 103
           G+DN + + NI V  + +PVI  ++ +G A+P
Sbjct: 284 GSDNKQVEKNITVTASVDPVIDLLQADGNALP 315


>pdb|2G0T|A Chain A, Crystal Structure Of A Putative Nucleotide Binding Protein
           (Tm0796) From Thermotoga Maritima At 2.67 A Resolution
 pdb|2G0T|B Chain B, Crystal Structure Of A Putative Nucleotide Binding Protein
           (Tm0796) From Thermotoga Maritima At 2.67 A Resolution
          Length = 350

 Score = 27.3 bits (59), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 10/45 (22%)

Query: 112 AILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEIEKDPDFE 156
            +LY SNP+    + DP +  ++ F          PEI K PDFE
Sbjct: 267 GLLYGSNPDVVFLVHDPSRDHFESF----------PEIPKKPDFE 301


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,905,639
Number of Sequences: 62578
Number of extensions: 295935
Number of successful extensions: 714
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 9
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)