Query psy6392
Match_columns 198
No_of_seqs 253 out of 1168
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 16:42:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_L 50S ribosomal protein L 99.8 5.6E-22 1.9E-26 159.4 3.7 84 4-102 58-141 (143)
2 3v2d_P 50S ribosomal protein L 99.8 2E-21 6.9E-26 157.2 6.7 83 4-102 60-145 (150)
3 2zjr_I 50S ribosomal protein L 99.8 1.2E-20 4E-25 153.4 1.0 82 5-102 59-140 (156)
4 1vq8_L 50S ribosomal protein L 99.8 5.4E-20 1.8E-24 150.7 4.9 88 6-102 47-141 (165)
5 3j21_L 50S ribosomal protein L 99.8 4.9E-19 1.7E-23 142.7 7.0 83 4-101 56-143 (147)
6 3bbo_N Ribosomal protein L15; 99.7 3E-19 1E-23 155.2 -4.2 92 5-102 124-217 (257)
7 2zkr_l 60S ribosomal protein L 99.6 3.4E-17 1.1E-21 131.6 2.7 88 5-102 52-144 (148)
8 3j21_P 50S ribosomal protein L 99.6 8.7E-17 3E-21 125.6 -0.3 69 5-102 32-100 (120)
9 4a17_K L29, RPL27A, 60S riboso 99.4 5.5E-14 1.9E-18 113.4 4.2 85 4-101 53-144 (149)
10 1vq8_O 50S ribosomal protein L 99.4 9.3E-14 3.2E-18 107.8 2.5 66 5-99 29-94 (116)
11 2zkr_o 60S ribosomal protein L 99.3 5E-13 1.7E-17 111.5 0.2 73 5-102 46-120 (188)
12 3jyw_O 60S ribosomal protein L 99.2 8.6E-13 2.9E-17 103.3 -1.1 73 4-102 26-101 (121)
13 3o58_Y 60S ribosomal protein L 99.1 7.3E-12 2.5E-16 101.1 0.4 90 4-102 51-145 (149)
14 3iz5_O 60S ribosomal protein L 98.9 2.4E-12 8.2E-17 103.4 -9.3 84 5-102 52-140 (144)
15 3izc_R 60S ribosomal protein R 98.9 5E-10 1.7E-14 93.2 2.9 70 5-99 47-118 (186)
16 3iz5_R 60S ribosomal protein L 98.8 5.3E-10 1.8E-14 93.2 1.5 69 5-99 47-117 (188)
17 4a17_N RPL18, 60S ribosomal pr 98.8 4E-10 1.4E-14 93.5 -0.0 68 5-101 48-120 (181)
18 3pys_P 30S ribosomal protein S 58.3 8.4 0.00029 27.8 3.2 38 5-43 32-69 (83)
19 1wjn_A Tubulin-folding protein 34.3 25 0.00086 24.6 2.6 53 128-182 32-92 (97)
20 2fip_A Late genes activator; p 30.7 6.8 0.00023 29.5 -1.0 16 111-126 65-80 (115)
21 2kpa_A ARNO(375-400); hydrolas 26.0 18 0.00063 20.7 0.5 15 149-163 1-15 (26)
22 1yfb_A Transition state regula 22.1 43 0.0015 22.2 1.8 22 169-190 34-58 (59)
23 1z1a_A Regulatory protein SIR1 21.9 39 0.0013 25.6 1.7 31 162-195 21-51 (142)
24 3r8n_P 30S ribosomal protein S 21.3 36 0.0012 24.3 1.4 31 7-37 34-65 (82)
25 3bn0_A 30S ribosomal protein S 20.7 26 0.00088 26.6 0.5 47 6-57 34-81 (112)
No 1
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=99.84 E-value=5.6e-22 Score=159.35 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=75.1
Q ss_pred cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEE
Q psy6392 4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIE 83 (198)
Q Consensus 4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Ie 83 (198)
.||||+||+ |.++++|.+|||++||.| + +++||+++|+++|+|+. ..++|||||+| +|+++|+|+
T Consensus 58 rRlPK~GF~--~~~~~~y~~VNL~~L~~~------~-~~~I~~~~L~~~glv~~----~~~~VKVLg~G--el~~~l~V~ 122 (143)
T 3r8s_L 58 RRLPKFGFT--SRKAAITAEIRLSDLAKV------E-GGVVDLNTLKAANIIGI----QIEFAKVILAG--EVTTPVTVR 122 (143)
T ss_dssp HHSCCCCCC--CSTGGGEEECCSSSSSCS------S-SSEEEHHHHGGGTSSCT----TCCEEECCCCS--CCCSCCEEE
T ss_pred EEccccccC--CcccceeEEEEHHHhhhc------c-CCeecHHHHHHcCcccc----CCCceEEeeCC--cccccEEEE
Confidence 379999999 667899999999999965 2 26899999999999986 34589999999 999999999
Q ss_pred EeecCHHHHHHHHHcCCCC
Q psy6392 84 VQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 84 v~~aS~sAieaIE~aG~pi 102 (198)
|++||++|++|||+||+.+
T Consensus 123 a~~~SksA~ekIEaAGG~v 141 (143)
T 3r8s_L 123 GLRVTKGARAAIEAAGGKI 141 (143)
T ss_dssp SSCCCHHHHHHHHTTTCEE
T ss_pred EEecCHHHHHHHHHcCCEE
Confidence 9999999999999999654
No 2
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=99.84 E-value=2e-21 Score=157.23 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=74.6
Q ss_pred cccCCCCCCC---CCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeE
Q psy6392 4 FLYLSQPLFT---GADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKI 80 (198)
Q Consensus 4 ~RlPKrGF~~---~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI 80 (198)
.||||+||++ +++++++|.+|||++||. ++ | +||+++|+++|+|+. .++|||||+| +++ +|
T Consensus 60 rRlPK~GF~~~~~~~~~~~~y~~VNL~~L~~-~~-G------~I~~~~L~~~glv~~-----~~~VKvLg~G--~l~-~v 123 (150)
T 3v2d_P 60 MRLPKRGMQGQVPGEIKRPRYQGVNLKDLAR-FE-G------EVTPELLVRAGLLKK-----GYRLKILGEG--EAK-PL 123 (150)
T ss_dssp TTSCCCSCCCCTTCCCCCCCEEEEEHHHHTT-CC-S------EECHHHHHTTTSSCT-----TCEEEEECSS--CCC-SC
T ss_pred EEcCccCccCccccccccceEEEEEHHHHhh-cC-C------cccHHHHHHCCCccc-----ccceEEEecC--Ccc-cE
Confidence 4899999995 337899999999999997 65 5 899999999999975 3599999999 999 99
Q ss_pred EEEEeecCHHHHHHHHHcCCCC
Q psy6392 81 NIEVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 81 ~Iev~~aS~sAieaIE~aG~pi 102 (198)
+|+|++||++|+++||+||+.+
T Consensus 124 ~V~a~~~S~~A~~kIe~aGG~v 145 (150)
T 3v2d_P 124 KVVAHAFSKSALEKLKAAGGEP 145 (150)
T ss_dssp EECBSCBCHHHHHHHHHTTCBC
T ss_pred EEEEEEcCHHHHHHHHHcCCEE
Confidence 9999999999999999999654
No 3
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=99.79 E-value=1.2e-20 Score=153.45 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=73.4
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV 84 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev 84 (198)
||||+||+ | ++++|.+|||++|+.|++. . ||+++|+++|+|+. ..++|||||+| +|+.||+|+|
T Consensus 59 rlPK~GF~--n-~~~~~~~VNL~~L~~l~~~------~-i~~~~L~~~gli~~----~~~~vKVLG~G--~l~~~l~Vka 122 (156)
T 2zjr_I 59 RLPKRGFN--N-VGTTYEVVKLSQLQDLEDT------T-FDRDTLEAYRLVRR----KNRPVKLLASG--EISRAVTVHV 122 (156)
T ss_dssp TSCCCCCC--C-CCCCCCEECHHHHTTSCCC------C-CCTTTTHHHHHCCC----CSSCCEECCCC--CCCCCCCCCC
T ss_pred ecCCCCCc--C-CceEEEeechhHHHhhhcC------C-cCHHHHHhCCcEec----cccceEEeeCC--ccCcCeEEEE
Confidence 79999999 5 7889999999999976543 3 88999999999986 35689999999 9999999999
Q ss_pred eecCHHHHHHHHHcCCCC
Q psy6392 85 QWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 85 ~~aS~sAieaIE~aG~pi 102 (198)
++||++|+++||+||+.+
T Consensus 123 ~~fSk~A~ekIEaAGG~v 140 (156)
T 2zjr_I 123 DAASAAAIKAVEAAGGRV 140 (156)
T ss_dssp SEECHHHHHHHGGGSCCC
T ss_pred EecCHHHHHHHHHcCCEE
Confidence 999999999999999665
No 4
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.79 E-value=5.4e-20 Score=150.68 Aligned_cols=88 Identities=8% Similarity=0.104 Sum_probs=75.4
Q ss_pred cCCCCCCCCCCCCcccceeehhhHHhHHh----hCCCC--CC-CccCHHHHHHCCCCcCCCCCCCcceEEecccccccce
Q psy6392 6 YLSQPLFTGADQRRQYPPLSLLQLQKFID----TNRID--PS-KPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKA 78 (198)
Q Consensus 6 lPKrGF~~~~~~r~~y~~INL~~Lq~~id----~Grid--~~-~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~ 78 (198)
|||+||++.+.++.+|.+|||++|+.|++ .|+++ .+ .+||+++|+++|+|. .+|||||+| +|++
T Consensus 47 lPK~GF~~~~~~r~~~~~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~-------~~vKVLG~G--~l~k 117 (165)
T 1vq8_L 47 LGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDA-------DYVKVLGAG--QVRH 117 (165)
T ss_dssp SCCCCCCCCGGGCCCEEEEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTS-------SEEEEECCS--CCCS
T ss_pred CCCCCCccCCcccceeeeEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccC-------CceEEecCC--ccCC
Confidence 99999996444458899999999999984 67773 34 379999999999983 479999999 9999
Q ss_pred eEEEEEeecCHHHHHHHHHcCCCC
Q psy6392 79 KINIEVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 79 kI~Iev~~aS~sAieaIE~aG~pi 102 (198)
||+|+|++||++|+++||+||+.+
T Consensus 118 ~l~Vka~~fSk~A~ekIeaAGG~v 141 (165)
T 1vq8_L 118 ELTLIADDFSEGAREKVEGAGGSV 141 (165)
T ss_dssp CCEEEESEECHHHHHHHHHTTCEE
T ss_pred CEEEEEEecCHHHHHHHHHcCCEE
Confidence 999999999999999999999543
No 5
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.76 E-value=4.9e-19 Score=142.69 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=69.6
Q ss_pred cccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCC-----CCCCCcceEEecccccccce
Q psy6392 4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFE-----PFHNHYGVNLTDEGADNFKA 78 (198)
Q Consensus 4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~-----~~~~k~gVKLLg~G~~~l~~ 78 (198)
.+|||+||++.++++++|.+|||++||.+++ +|+++|+++.. ++..++||||||+| +|++
T Consensus 56 ~~~pK~GF~n~~~~~~~~~~VNL~~L~~l~~-------------~L~~~gli~~~~~~~vid~~~~GvKVLG~G--~l~~ 120 (147)
T 3j21_L 56 DHLGKRGFSRPPEVQREVRVVNLKFIDEHLD-------------ELMQMGIAYEEGGKIIVDVTQFADKVLGTG--KLTR 120 (147)
T ss_dssp CCSCCCSCCCCTTTCCCCCEEEHHHHHHTTT-------------TTTTSCCCSSSSBSEEEEGGGGCCEEECCS--CCSS
T ss_pred CcCCcCCCCccccccceeEEEEHHHHHHHHH-------------HHHHcCcccccCCcceecccccCcEEecCC--ccCc
Confidence 4899999996555688999999999999875 27888888652 11134469999999 9999
Q ss_pred eEEEEEeecCHHHHHHHHHcCCC
Q psy6392 79 KINIEVQWTSEPVIAAIERNGEA 101 (198)
Q Consensus 79 kI~Iev~~aS~sAieaIE~aG~p 101 (198)
||+|+|+.||++|+++||+||+.
T Consensus 121 ~v~Vka~~fS~~A~ekIeaaGG~ 143 (147)
T 3j21_L 121 PLVIKARAFSPKAEEKIKAAGGE 143 (147)
T ss_dssp CEEEEESEECHHHHHHHHHTTCE
T ss_pred CEEEEEEecCHHHHHHHHHcCCE
Confidence 99999999999999999999964
No 6
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.69 E-value=3e-19 Score=155.18 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=76.9
Q ss_pred ccCC-CCCCCCCC-CCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEE
Q psy6392 5 LYLS-QPLFTGAD-QRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINI 82 (198)
Q Consensus 5 RlPK-rGF~~~~~-~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~I 82 (198)
|||| +||+++++ ++++|.+|||++|+.+ +++++++||+++|+++|+|+.......++|||||+| +|+.+|+|
T Consensus 124 RlPK~rGF~n~~~~~r~~y~~VNL~kL~~l----r~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~G--eLtkkLtV 197 (257)
T 3bbo_N 124 RLPKLRGIAGGMHAGLPKYVNVNLTDIENA----GFQDGEEVSLETLKAKRVINPSGRERKLPLKILADG--ELSKKLTI 197 (257)
T ss_dssp CCCCCSSCCCCCSSCCSSSSCSCSSCCSCS----STTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSS--CCCSSCCC
T ss_pred hcccccccCCccccCcceeeeEeHHHHhhc----ccCCCCEeCHHHHHhCCcccccccccCccEEEEeCC--ccCCCeEE
Confidence 7999 89996543 5779999999999865 355667899999999999975100124589999999 99999999
Q ss_pred EEeecCHHHHHHHHHcCCCC
Q psy6392 83 EVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 83 ev~~aS~sAieaIE~aG~pi 102 (198)
+|++||++|+++||+||+.+
T Consensus 198 kA~~fSksA~eKIEaAGG~v 217 (257)
T 3bbo_N 198 KAGAFSTSAKEKLEYAGCSL 217 (257)
T ss_dssp CSSCCTGGGTTSSTTTTCCE
T ss_pred EEEecCHHHHHHHHHcCCEE
Confidence 99999999999999999554
No 7
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.64 E-value=3.4e-17 Score=131.64 Aligned_cols=88 Identities=10% Similarity=0.111 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCCCc-cc-ceeehhhHHhHHhhCCCCCCCccCHHH-H-HHCCCCcCCCCCCCcceEEecccccccce-e
Q psy6392 5 LYLSQPLFTGADQRR-QY-PPLSLLQLQKFIDTNRIDPSKPIDLAA-L-CNTGLYTFEPFHNHYGVNLTDEGADNFKA-K 79 (198)
Q Consensus 5 RlPKrGF~~~~~~r~-~y-~~INL~~Lq~~id~Grid~~~~Idl~~-L-~~~Gli~~~~~~~k~gVKLLg~G~~~l~~-k 79 (198)
.|||+||++.+..+. .| .+|||++|+.|++.+. .+|+.. | .++++|... ...+|||||+| ++++ |
T Consensus 52 ~lpK~GF~~~~~~~~~~~~~~VNl~~L~~l~~~~~-----~~~~~~~l~~~~~vI~~~---~~~~vKVLG~G--el~k~~ 121 (148)
T 2zkr_l 52 YFGKVGMKHYHLKRNQSFCPTVNLDKPWTLVSEQT-----RVNAAKNKTGVAPIIDVV---RSGYYKVLGKG--KLPKQP 121 (148)
T ss_dssp ----------------CCCCEEETHHHHHHTTTTT-----SSCTTTTEEEHHHHSTTC---SSSCCEEECCS--CCCSSC
T ss_pred cCCCCCcCCCCccccceecceEEHHHHHhhhhcCc-----EEehhhhccccCCeEecc---ccCceEEecCC--ccccCC
Confidence 499999994332223 45 8999999999887652 344432 2 466777641 23359999999 9998 9
Q ss_pred EEEEEeecCHHHHHHHHHcCCCC
Q psy6392 80 INIEVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 80 I~Iev~~aS~sAieaIE~aG~pi 102 (198)
|+|+|+.||++|+++||+||+.+
T Consensus 122 l~Vka~~fSk~A~ekIeaAGG~v 144 (148)
T 2zkr_l 122 VIVKAKFFSRRAEEKIKSVGGAC 144 (148)
T ss_dssp CEEEESEECHHHHHHHHHTTCEE
T ss_pred EEEEEEecCHHHHHHHHHcCCEE
Confidence 99999999999999999999643
No 8
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.59 E-value=8.7e-17 Score=125.64 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=59.9
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV 84 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev 84 (198)
|+|||||+ + +++|.+|||++||++++.| ++|| .++||||+| +++.+++|+|
T Consensus 32 rlpKrgF~--~--r~~~~~VnL~~L~~~~~~g-----~~i~------------------~~vKVLg~G--~l~~kl~V~a 82 (120)
T 3j21_P 32 DVAWRLER--P--RRQRAEVNVSKINRYANDG-----EMIV------------------VPGSVLGAG--KLEKKVIVAA 82 (120)
T ss_dssp HHHHHHHS--C--TTSSEEEEHHHHTTSSCTT-----CEEE------------------EEEEEECSS--CCCSCCEEEE
T ss_pred HHHhhcCC--C--CCcceeEEHHHHHHHHhcC-----CEEE------------------EEEEEcCCC--eecCCEEEEE
Confidence 79999999 4 7889999999999887654 2333 268999999 9999999999
Q ss_pred eecCHHHHHHHHHcCCCC
Q psy6392 85 QWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 85 ~~aS~sAieaIE~aG~pi 102 (198)
++||++|+++||+||+.+
T Consensus 83 ~~fS~~A~ekIe~AGG~v 100 (120)
T 3j21_P 83 WKFSETARRKIIEAGGEA 100 (120)
T ss_dssp EEECHHHHHHHTTTSSCE
T ss_pred eccCHHHHHHHHHcCCEE
Confidence 999999999999999654
No 9
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=99.43 E-value=5.5e-14 Score=113.43 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=62.2
Q ss_pred cccCCCCCCCCCCC--CcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCC---CCcCCCCCCCc-ceEEeccccccc-
Q psy6392 4 FLYLSQPLFTGADQ--RRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTG---LYTFEPFHNHY-GVNLTDEGADNF- 76 (198)
Q Consensus 4 ~RlPKrGF~~~~~~--r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~G---li~~~~~~~k~-gVKLLg~G~~~l- 76 (198)
.+|||+||++++.. +..+++|||++|+.+++.+. .++... +.+ +|.. .+. .|||||+| +|
T Consensus 53 ~~fGK~Gfr~~h~~~n~~~~~~VNLdkL~~l~~~~~-----~~~~~~--~~~~~~vId~----~~~g~~KvLG~G--~l~ 119 (149)
T 4a17_K 53 GYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDAT-----RQKYAE--DKKKVPVIDV----TKAGFFKVLGKG--RLP 119 (149)
T ss_dssp TCSSCCSCCCSSCCCGGGCCCEEEGGGHHHHSCHHH-----HHHHHH--CCSSCCEEEH----HHHTCCEEECCS--CCC
T ss_pred CcCCCCCccCCCccCCcceeeEEEHHHHHHHhhhhc-----chhhhh--hcCCceEEEe----ccCCeEEEecCC--ccC
Confidence 47999999964433 45678999999999875531 122222 222 3321 112 49999999 99
Q ss_pred ceeEEEEEeecCHHHHHHHHHcCCC
Q psy6392 77 KAKINIEVQWTSEPVIAAIERNGEA 101 (198)
Q Consensus 77 ~~kI~Iev~~aS~sAieaIE~aG~p 101 (198)
+.||+|+|..||++|+++||+||+.
T Consensus 120 ~~~v~v~a~~fS~~A~~kIe~aGG~ 144 (149)
T 4a17_K 120 NQPVVVKAKYFSKTAERRIVAVGGA 144 (149)
T ss_dssp SSCCEEEESEECHHHHHHHHHTTCE
T ss_pred CCCEEEEEeecCHHHHHHHHHcCCE
Confidence 8999999999999999999999954
No 10
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=99.38 E-value=9.3e-14 Score=107.84 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=56.5
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccceeEEEEE
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKAKINIEV 84 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~kI~Iev 84 (198)
|+|||| + .++++|.+|||++|+.+++.| ++| + + ++||||+| +++.+++|+|
T Consensus 29 RlPKrG-~---~~~~~~~~VnL~~L~~~~~~g-----~~i---------l-------v--~vKVLg~G--~l~k~l~V~a 79 (116)
T 1vq8_O 29 DVAERL-E---KPRRTHAEVNLGRIERYAQED-----ETV---------V-------V--PGKVLGSG--VLQKDVTVAA 79 (116)
T ss_dssp HHHHHH-T---SCTTTSEEEEHHHHHHHCCTT-----SEE---------E-------E--EEEEECCS--CCCSCCEEEE
T ss_pred hcccCC-C---CCCceeeeEeHHHHHHHccCC-----CEE---------E-------E--EEEEeeCC--eecCCEEEEE
Confidence 799999 3 357899999999999887655 233 1 1 68999999 9999999999
Q ss_pred eecCHHHHHHHHHcC
Q psy6392 85 QWTSEPVIAAIERNG 99 (198)
Q Consensus 85 ~~aS~sAieaIE~aG 99 (198)
++||++|+++||+||
T Consensus 80 ~~fSk~A~ekIeaAG 94 (116)
T 1vq8_O 80 VDFSGTAETKIDQVG 94 (116)
T ss_dssp EEECHHHHHHHHHHS
T ss_pred EecCHHHHHHHHHcC
Confidence 999999999999995
No 11
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.26 E-value=5e-13 Score=111.51 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=57.3
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccce--eEEE
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFKA--KINI 82 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~~--kI~I 82 (198)
|+|||||+ + +++|.+|||++|+.+... +++.. +++ ...+||||+| +++. +++|
T Consensus 46 rlpKRgF~--s--r~~y~~VNLs~L~~~~~~----~g~~~--------~ii-------v~~~KVLg~G--eL~kvpkLtV 100 (188)
T 2zkr_o 46 VVLKRLFM--S--RTNRPPLSLSRMIRKMKL----PGREN--------KTA-------VVVGTVTDDV--RILEVPKLKV 100 (188)
T ss_dssp HHHHHHHS--C--TTTSCEEEHHHHHSCSSS----CCSTT--------SEE-------EEEEEEECSS--CCCCCSSCCE
T ss_pred HHHHhhCC--C--ccceeeeeHHHHHHHhhh----cCCCC--------cEE-------EeecEEECCc--eecccCCeEE
Confidence 79999999 5 689999999999975410 01111 111 1357999999 9999 9999
Q ss_pred EEeecCHHHHHHHHHcCCCC
Q psy6392 83 EVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 83 ev~~aS~sAieaIE~aG~pi 102 (198)
.|.+||++|+++||+||+.+
T Consensus 101 ~A~~fSksArekIEaAGG~v 120 (188)
T 2zkr_o 101 CALRVSSRARSRILKAGGKI 120 (188)
T ss_dssp EEEEECHHHHHHHHHHSSCE
T ss_pred EEeecCHHHHHHHHHcCCEE
Confidence 99999999999999999543
No 12
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=99.21 E-value=8.6e-13 Score=103.28 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=58.5
Q ss_pred cccCCCCCCCCCCCCcccceeehhhHHhHHh-hCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccc--eeE
Q psy6392 4 FLYLSQPLFTGADQRRQYPPLSLLQLQKFID-TNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK--AKI 80 (198)
Q Consensus 4 ~RlPKrGF~~~~~~r~~y~~INL~~Lq~~id-~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~--~kI 80 (198)
.|+|||||+ + +.+|.+|||++|+.+.+ .|+ +++++ ...+||||+| +++ .++
T Consensus 26 rrvpKRgF~--s--r~~~~~VnLs~L~~~~~~~g~--~g~~v------------------vv~~KVlg~G--~l~~~~kl 79 (121)
T 3jyw_O 26 KVVLKALFL--S--KINRPPVSVSRIARALKQEGA--ANKTV------------------VVVGTVTDDA--RIFEFPKT 79 (121)
T ss_dssp HHHHHTTTS--C--STTSCCBCHHHHHHHTTTTSC--SSSEE------------------EESSCBCCCS--CCCSSSCC
T ss_pred HHHHHHHCC--C--CCccceEEHHHHHHHhhccCC--CCCEE------------------EEEEEEcCCc--eEcccCCE
Confidence 378999999 4 57999999999998765 221 11222 1256899999 998 799
Q ss_pred EEEEeecCHHHHHHHHHcCCCC
Q psy6392 81 NIEVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 81 ~Iev~~aS~sAieaIE~aG~pi 102 (198)
+|.+.+||++|+++||+||+.+
T Consensus 80 ~V~a~~fS~~A~~kIe~AGG~~ 101 (121)
T 3jyw_O 80 TVAALRFTAGARAKIVKAGGEC 101 (121)
T ss_dssp CEECSSBCTTTTTHHHHHTCCB
T ss_pred EEEEEecCHHHHHHHHHcCCEE
Confidence 9999999999999999999654
No 13
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=99.12 E-value=7.3e-12 Score=101.14 Aligned_cols=90 Identities=12% Similarity=0.045 Sum_probs=60.3
Q ss_pred cccCCCCCCCCCCCC--cccceeehhhHHhHHhhCCCCCCCccCHHHHH-HCCCCcCCCCCCCc-ceEEeccccccc-ce
Q psy6392 4 FLYLSQPLFTGADQR--RQYPPLSLLQLQKFIDTNRIDPSKPIDLAALC-NTGLYTFEPFHNHY-GVNLTDEGADNF-KA 78 (198)
Q Consensus 4 ~RlPKrGF~~~~~~r--~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~-~~Gli~~~~~~~k~-gVKLLg~G~~~l-~~ 78 (198)
..++|+||++++..+ ...++|||++|..+++...-. +..+.- +.+..- ++..+. .|||||+| +| +.
T Consensus 51 ~~fGK~G~r~~h~~~n~~~~~~INldkL~~lv~~~~~~-----~~a~~~~~~~~~v--ID~~~~g~vKVLG~G--~l~~~ 121 (149)
T 3o58_Y 51 GYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRD-----QYLKSASKETAPV--IDTLAAGYGKILGKG--RIPNV 121 (149)
T ss_dssp SSSSCCSCCCCCCCCCCCCCCSTTTTHHHHCSSCCSCS-----SCTTSSTTSSCCB--CCCSSSCSCCCCCCC--CCCSC
T ss_pred CccCCCCcccCcccccccccceEEHHHHHHHhHHHHhh-----hhhhhccCCCCcE--EEEecccceEEEcCC--ccCCC
Confidence 358999999654433 224689999999988654211 000000 001100 112233 49999999 99 99
Q ss_pred eEEEEEeecCHHHHHHHHHcCCCC
Q psy6392 79 KINIEVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 79 kI~Iev~~aS~sAieaIE~aG~pi 102 (198)
||+|+|..||++|+++||+||+.+
T Consensus 122 ~v~Vka~~fS~~A~ekIe~aGG~~ 145 (149)
T 3o58_Y 122 PVIVKARFVSKLAEEKIRAAGGVV 145 (149)
T ss_dssp CEEECSSCCTTTTHHHHGGGSCEE
T ss_pred CEEEEEeecCHHHHHHHHHcCCEE
Confidence 999999999999999999999643
No 14
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=98.93 E-value=2.4e-12 Score=103.43 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=59.7
Q ss_pred ccCCCCCCCCCCCC--cccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcc-eEEeccccccc--cee
Q psy6392 5 LYLSQPLFTGADQR--RQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYG-VNLTDEGADNF--KAK 79 (198)
Q Consensus 5 RlPKrGF~~~~~~r--~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~g-VKLLg~G~~~l--~~k 79 (198)
.++|+||++++..+ ...++|||++|..+++.+.. .+.+-+.. ++..+.| +||||+| ++ +.|
T Consensus 52 ~fGK~G~r~~h~~~n~~~~~~VNl~kL~~lv~~~~a-----------~~~~~~~v-IDl~~~G~~KvLG~G--~l~~~~~ 117 (144)
T 3iz5_O 52 YFGKVGMRYFHRLSNRFHCPAVNVERLWSMVPAEAG-----------AGAGKAPV-IDVTQFGYTKVLGKG--MLPPERP 117 (144)
T ss_dssp HTSTTCTTSCCCSSCTTSCEEEGGGTSTTCTTSSEE-----------EEECCSCC-CSCCEEEESEECHHH--HSTTCTT
T ss_pred ccCCCCccCCCccccccccceEEHHHHHHHhHHhhh-----------ccCCCceE-EEeeccCcEEEeCCC--ccCCccC
Confidence 47999999655443 23469999999988765421 01111100 1112334 9999999 88 899
Q ss_pred EEEEEeecCHHHHHHHHHcCCCC
Q psy6392 80 INIEVQWTSEPVIAAIERNGEAI 102 (198)
Q Consensus 80 I~Iev~~aS~sAieaIE~aG~pi 102 (198)
|+|+|..||++|+++||+||+.+
T Consensus 118 v~Vka~~fS~~A~ekIe~aGG~v 140 (144)
T 3iz5_O 118 IVVKAKLISKVAEKKIKAAGGAV 140 (144)
T ss_dssp CCCEECGGGSSCSCCCSSCCCCC
T ss_pred EEEEEeecCHHHHHHHHHcCCEE
Confidence 99999999999999999999654
No 15
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=98.89 E-value=5e-10 Score=93.24 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=57.1
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccc--eeEEE
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK--AKINI 82 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~--~kI~I 82 (198)
++|||+|. + +.+|.+|||++|+.+.+.+-+ +++++ -..+||||+| +++ .+++|
T Consensus 47 ~V~KRLf~--s--r~~r~~VnLsrI~r~~k~~g~-~g~~v------------------Vv~gKVLg~G--~L~~v~kl~V 101 (186)
T 3izc_R 47 VVLKALFL--S--KINRPPVSVSRIARALKQEGA-ANKTV------------------VVVGTVTDDA--RIFEFPKTTV 101 (186)
T ss_dssp HHHHHHHS--C--TTTCCEEEHHHHHHHTTTTSS-SSCEE------------------EESSEEECCC--CSSCCCCEEE
T ss_pred HHHHHHhC--C--CcccCcccHHHHHHHhhccCC-CCCEE------------------EEEeEEecCc--eEcccCCEEE
Confidence 57899999 4 579999999999988765321 12222 1257999999 998 79999
Q ss_pred EEeecCHHHHHHHHHcC
Q psy6392 83 EVQWTSEPVIAAIERNG 99 (198)
Q Consensus 83 ev~~aS~sAieaIE~aG 99 (198)
.+.+||++|+++||+||
T Consensus 102 ~A~~fS~sA~ekIe~AG 118 (186)
T 3izc_R 102 AALRFTAGARAKIVKAG 118 (186)
T ss_dssp EESCCCHHHHHHHHHHS
T ss_pred EEEecCHHHHHHHHHcC
Confidence 99999999999999999
No 16
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=98.85 E-value=5.3e-10 Score=93.21 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=55.2
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccc--eeEEE
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK--AKINI 82 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~--~kI~I 82 (198)
++|||+|. + +.+|.+|||++|+.+++. + +.+++| -..+||||+| +++ .+++|
T Consensus 47 ~V~KRLf~--s--r~~r~pVnLsrL~r~~k~-~-e~gk~V------------------Vv~gKVLg~G--~L~~v~kl~V 100 (188)
T 3iz5_R 47 VILKRLFM--S--KTNRPPLSMRRLSNFMKG-K-EEKNIA------------------VVVGTITDDM--RIQEVPAMKV 100 (188)
T ss_dssp HHHHHHHS--C--TTTCCEEEHHHHHTTSCS-S-STTCEE------------------EEEEEEECCC--CSSCCSSEEE
T ss_pred HHHHHHcC--C--ccccCcccHHHHHHHhcc-c-cCCCEE------------------EEEEEEcCCc--eEcccCCEEE
Confidence 57899999 4 579999999999977642 0 002222 1257999999 998 68999
Q ss_pred EEeecCHHHHHHHHHcC
Q psy6392 83 EVQWTSEPVIAAIERNG 99 (198)
Q Consensus 83 ev~~aS~sAieaIE~aG 99 (198)
.+.+||++|+++||+||
T Consensus 101 ~A~~fS~sA~ekIe~AG 117 (188)
T 3iz5_R 101 TALRFTETARARIINAG 117 (188)
T ss_dssp EEEECCHHHHHHHHTTS
T ss_pred EEeecCHHHHHHHHHcC
Confidence 99999999999999999
No 17
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=98.82 E-value=4e-10 Score=93.49 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=55.8
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhh---CCCCCCCccCHHHHHHCCCCcCCCCCCCcceEEecccccccc--ee
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDT---NRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGADNFK--AK 79 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~---Grid~~~~Idl~~L~~~Gli~~~~~~~k~gVKLLg~G~~~l~--~k 79 (198)
++|||+|. + +.+|.+|||++|+.+++. |. +| -..+||||+| +++ .+
T Consensus 48 ~V~KRLf~--s--r~nr~pVnLsrI~r~~~~~e~gk-----~v------------------Vv~gKVLg~G--~l~~v~k 98 (181)
T 4a17_N 48 NILKRLSS--S--RLNKFPLSLSRIVKNLNETNKEQ-----VI------------------VSTSTVTNDE--RLLTVPK 98 (181)
T ss_dssp HHHHHHSC--C--GGGSCCEEHHHHHHSCCHHHHHS-----EE------------------EESSEEECCT--TCCSCCC
T ss_pred HHHHHHcC--C--ccccCcccHHHHHHHhccccCCC-----EE------------------EEEEEEcCCc--eEcccCC
Confidence 57899999 4 679999999999987643 31 11 1256999999 998 78
Q ss_pred EEEEEeecCHHHHHHHHHcCCC
Q psy6392 80 INIEVQWTSEPVIAAIERNGEA 101 (198)
Q Consensus 80 I~Iev~~aS~sAieaIE~aG~p 101 (198)
++|.+.+||++|+++||+||+.
T Consensus 99 l~V~A~~fS~sA~ekIe~AGG~ 120 (181)
T 4a17_N 99 LTVCALKFTETARKRILAAGGK 120 (181)
T ss_dssp CEEECSEECHHHHHHHHTTTCE
T ss_pred EEEEEeecCHHHHHHHHHcCCE
Confidence 9999999999999999999943
No 18
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=58.31 E-value=8.4 Score=27.77 Aligned_cols=38 Identities=3% Similarity=0.141 Sum_probs=25.7
Q ss_pred ccCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCc
Q psy6392 5 LYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKP 43 (198)
Q Consensus 5 RlPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~ 43 (198)
-+-+-||.+|.........||++++++|+..|- .|+++
T Consensus 32 ~IE~lG~YnP~~~~~~~i~l~~eri~~Wl~~GA-qptdt 69 (83)
T 3pys_P 32 YIEKIGYYDPRKTTPDWLKVDVERARYWLSVGA-QPTDT 69 (83)
T ss_dssp CSEECCCBCSSCCSTTCBCCCHHHHHHHHHTCC-CBCST
T ss_pred ceeeeeEEcCCCCCCceEEEchHHHHHHHHCCC-cCCHH
Confidence 344578986544233456799999999999984 34443
No 19
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.27 E-value=25 Score=24.59 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=32.0
Q ss_pred ccchhHHHHHHHHHcCCCCCCCCCchhHH-------hhhccCCCcc-cccCCCCcceeecCcc
Q psy6392 128 PEQISWQRFALAQKYGYTLPEIEKDPDFE-------MLSMRKDPRQ-VFYGLEPGWVVNVIDK 182 (198)
Q Consensus 128 ~~~i~~~r~~~a~k~gy~lp~~~~~~~~~-------~l~~~k~p~q-~f~gl~pg~vv~l~d~ 182 (198)
...|.+.+..+++..| +|.....-.|. .....+|-+. -|||+.+|..|-+.|.
T Consensus 32 ~~TV~~LK~~i~~~~g--ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 32 SMTVQKVKGLLSRLLK--VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp TSBHHHHHHHHHTTTT--CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHHC--CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 3478888888888887 33333222221 1111244333 3999999998888774
No 20
>2fip_A Late genes activator; protein-DNA complex, N-HOOK DNA-binding motif, transcription regulation; 2.00A {Bacillus phage PHI29} PDB: 2fio_A*
Probab=30.75 E-value=6.8 Score=29.48 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=14.4
Q ss_pred cccccccCcCCCCccC
Q psy6392 111 DAILYYSNPESRGYLA 126 (198)
Q Consensus 111 d~i~yY~~~~~RGYLa 126 (198)
.+|.||++-++||++|
T Consensus 65 aDI~fYs~VEKRGF~~ 80 (115)
T 2fip_A 65 ADITFYSEVEKRGFHA 80 (115)
T ss_dssp HHHHHHHHHCSSCCCE
T ss_pred HHHHHHHHhhhcceee
Confidence 3599999999999987
No 21
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=26.03 E-value=18 Score=20.70 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=11.8
Q ss_pred CCCchhHHhhhccCC
Q psy6392 149 IEKDPDFEMLSMRKD 163 (198)
Q Consensus 149 ~~~~~~~~~l~~~k~ 163 (198)
|+-||-|+||+.||-
T Consensus 1 Is~dPFYdml~~RKk 15 (26)
T 2kpa_A 1 VSVDPFYEMLAARKK 15 (26)
T ss_dssp CCSHHHHHHHTCTHH
T ss_pred CCcchHHHHHHHHHH
Confidence 456888999998874
No 22
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=22.07 E-value=43 Score=22.16 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=15.7
Q ss_pred cCCCCcceee---cCcceeecCCCh
Q psy6392 169 YGLEPGWVVN---VIDKMILKPKDP 190 (198)
Q Consensus 169 ~gl~pg~vv~---l~d~~~~~p~~~ 190 (198)
+||.||..|. -.|+.+|+|.++
T Consensus 34 Lgi~~Gd~l~i~~~~~~IiL~p~~p 58 (59)
T 1yfb_A 34 LGIAEKDALEIYVDDEKIILKKYKP 58 (59)
T ss_dssp TTCCTTCEEEEEEETTEEEEEECCC
T ss_pred cCCCCCCEEEEEEECCEEEEEECCC
Confidence 6899997433 357788888775
No 23
>1z1a_A Regulatory protein SIR1; novel fold, transcription; HET: MSE; 2.50A {Saccharomyces cerevisiae} SCOP: d.339.1.1 PDB: 1zhi_B 1zbx_B
Probab=21.94 E-value=39 Score=25.63 Aligned_cols=31 Identities=26% Similarity=0.698 Sum_probs=25.8
Q ss_pred CCCcccccCCCCcceeecCcceeecCCChhhhhh
Q psy6392 162 KDPRQVFYGLEPGWVVNVIDKMILKPKDPELIEY 195 (198)
Q Consensus 162 k~p~q~f~gl~pg~vv~l~d~~~~~p~~~~~~~~ 195 (198)
-.|| |=.+-|.+|.|++.+-+-|+||.|+..
T Consensus 21 vspr---flvadgflidlaeekpinpkdprlltl 51 (142)
T 1z1a_A 21 VSPR---FLVADGFLIDLAEEKPINPKDPRLLTL 51 (142)
T ss_dssp SSSS---EEEETTEEEETTTTEEECTTCTTHHHH
T ss_pred cCcc---eEeecceeeehhhcCCCCCCChhHHHH
Confidence 4577 456789999999999999999998753
No 24
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=21.35 E-value=36 Score=24.34 Aligned_cols=31 Identities=10% Similarity=0.157 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCC-cccceeehhhHHhHHhhCC
Q psy6392 7 LSQPLFTGADQR-RQYPPLSLLQLQKFIDTNR 37 (198)
Q Consensus 7 PKrGF~~~~~~r-~~y~~INL~~Lq~~id~Gr 37 (198)
-.-||.+|.... .+-..||++++++|+..|-
T Consensus 34 E~lG~YnP~~~~~~~~v~l~~eri~~Wl~~GA 65 (82)
T 3r8n_P 34 ERVGFFNPIASEKEEGTRLDLDRIAHWVGQGA 65 (82)
T ss_dssp EEEEEECTTCCSSSCCCCCCHHHHHHHHHHTC
T ss_pred eeeeEEcCCCCCCcceEEEcHHHHHHHHHCCC
Confidence 345787544321 1246799999999999983
No 25
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=20.72 E-value=26 Score=26.60 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=29.9
Q ss_pred cCCCCCCCCCCCCcccceeehhhHHhHHhhCCCCCCCccCHHH-HHHCCCCcC
Q psy6392 6 YLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAA-LCNTGLYTF 57 (198)
Q Consensus 6 lPKrGF~~~~~~r~~y~~INL~~Lq~~id~Grid~~~~Idl~~-L~~~Gli~~ 57 (198)
+-+-||.+|. ......||+++++.|+..|- .|++ +... |..+|++..
T Consensus 34 IE~lG~YnP~--~~~~v~ld~eri~~WL~~GA-QPTd--tV~~LL~~ag~~~~ 81 (112)
T 3bn0_A 34 IDILGTYDPK--RKVLINVYPEKVKEWVLKGV-ELSH--RAKAILWNHGILKE 81 (112)
T ss_dssp SEEEEEEETT--TTEEEEECHHHHHHHHHTTC-EEEH--HHHHHHHHTTHHHH
T ss_pred EeEeeeccCC--CcceEEEcHHHHHHHHHcCC-ccCH--HHHHHHHHcCCccc
Confidence 3346888543 44567899999999999984 2332 3333 445676543
Done!