RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6392
         (198 letters)



>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 8/86 (9%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 18  RRQYPPLSLLQLQKFIDT----NRIDPSKPIDLAALCNTGLYTFEPFHNHYGVNLTDEGA 73
           + +   + + ++ + +      +  +         + +            Y   L   GA
Sbjct: 58  QEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEE---ADDADYVKVL---GA 111

Query: 74  DNFKAKINIEVQWTSEPVIAAIERNG 99
              + ++ +     SE     +E  G
Sbjct: 112 GQVRHELTLIADDFSEGAREKVEGAG 137


>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 14/96 (14%)

Query: 5   LYLSQPLFTGAD-QRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFHNH 63
           LY   P F     +      + L  L K            +DL  L    +         
Sbjct: 54  LYRRLPKFGFTSRKAAITAEIRLSDLAKVEG-------GVVDLNTLKAANIIG----IQI 102

Query: 64  YGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNG 99
               +    A      + +     ++   AAIE  G
Sbjct: 103 EFAKVI--LAGEVTTPVTVRGLRVTKGARAAIEAAG 136


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 11/78 (14%)

Query: 31  KFIDTNRIDPSKPIDLAALCNTGLYTFEPF---------HNHYGVNLTDEGADNFKAKIN 81
           K    N     + + L+ L +    TF+             +  V L   G       + 
Sbjct: 59  KRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASG--EISRAVT 116

Query: 82  IEVQWTSEPVIAAIERNG 99
           + V   S   I A+E  G
Sbjct: 117 VHVDAASAAAIKAVEAAG 134


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score = 30.4 bits (68), Expect = 0.076
 Identities = 8/98 (8%), Positives = 23/98 (23%), Gaps = 4/98 (4%)

Query: 2   KGFLYLSQPLFTGADQRRQYPPLSLLQLQKFIDTNRIDPSKPIDLAALCNTGLYTFEPFH 61
           + F            +R     +     +       +      +   +    L       
Sbjct: 45  RRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLARFE-GEVTPELLVRAGLLK 103

Query: 62  NHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNG 99
             Y + +  EG       + +     S+  +  ++  G
Sbjct: 104 KGYRLKILGEGEAK---PLKVVAHAFSKSALEKLKAAG 138


>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 267

 Score = 27.9 bits (61), Expect = 0.69
 Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 4/51 (7%)

Query: 99  GEAIPLRFQPPQDAILYYSNPESRGYLADPEQISWQRFALAQKYGYTLPEI 149
           G  IP+ F       +Y  +     + A P+  +W     A          
Sbjct: 15  GRDIPVAFLAGGPHAVYLLD----AFNAGPDVSNWVTAGNAMNTLAGKGIS 61


>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
           10760]}
          Length = 882

 Score = 26.3 bits (57), Expect = 3.2
 Identities = 9/72 (12%), Positives = 12/72 (16%)

Query: 127 DPEQISWQRFALAQKYGYTLPEIEKDPDFEMLSMRKDPRQVFYGLEPGWVVNVIDKMILK 186
             E   W +   A   G       +   F   +           LE  W           
Sbjct: 452 GKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFL 511

Query: 187 PKDPELIEYYKS 198
               E       
Sbjct: 512 AFCFEYAGVQHH 523


>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 102

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 7/15 (46%), Positives = 7/15 (46%)

Query: 138 LAQKYGYTLPEIEKD 152
           LA K G  L   E D
Sbjct: 88  LAAKAGVDLSVYELD 102


>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus),
           pcc7942 [TaxId: 1129]}
          Length = 98

 Score = 23.9 bits (52), Expect = 8.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 157 MLSMRKDPRQVFYGLEPGWVVNVIDKMI 184
           ++S RK  R V+Y L+   +V +    +
Sbjct: 65  LVSYRKQGRHVYYQLQDHHIVALYQNAL 92


>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 137

 Score = 23.9 bits (51), Expect = 9.7
 Identities = 7/74 (9%), Positives = 14/74 (18%), Gaps = 4/74 (5%)

Query: 61  HNHYGVNLTDEGADNFKAKINIEVQWTSEPVIAAIERNGEAIPLRFQPPQDAILYYSNPE 120
                 +             +I +   S+     +            P            
Sbjct: 62  FALMASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPTFWA----A 117

Query: 121 SRGYLADPEQISWQ 134
           S G   D   ++W 
Sbjct: 118 SFGMFTDRFGVAWM 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 830,866
Number of extensions: 40845
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 13
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)